Query 044604
Match_columns 476
No_of_seqs 290 out of 2045
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:57:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03046 D-glycerate 3-kinase; 100.0 2.9E-91 6.2E-96 724.5 32.0 394 74-476 62-457 (460)
2 PLN02796 D-glycerate 3-kinase 100.0 1.5E-76 3.3E-81 603.8 30.2 342 132-476 2-345 (347)
3 KOG2878 Predicted kinase [Gene 100.0 9.5E-57 2.1E-61 427.6 22.6 246 228-476 28-279 (282)
4 COG4240 Predicted kinase [Gene 100.0 3.8E-49 8.3E-54 381.4 20.5 237 229-475 48-294 (300)
5 PRK05439 pantothenate kinase; 100.0 1.2E-44 2.5E-49 366.3 20.6 271 154-475 5-303 (311)
6 TIGR00554 panK_bact pantothena 100.0 6E-42 1.3E-46 343.7 19.0 256 180-475 9-283 (290)
7 COG1072 CoaA Panthothenate kin 100.0 8.1E-40 1.8E-44 323.9 14.3 252 156-458 3-282 (283)
8 cd02025 PanK Pantothenate kina 100.0 1.7E-31 3.6E-36 257.7 19.1 200 233-475 1-215 (220)
9 COG0572 Udk Uridine kinase [Nu 100.0 6.5E-32 1.4E-36 260.9 14.6 187 229-473 6-193 (218)
10 PF00485 PRK: Phosphoribulokin 100.0 1.7E-30 3.8E-35 243.8 13.6 187 233-473 1-191 (194)
11 PTZ00301 uridine kinase; Provi 100.0 7.1E-30 1.5E-34 245.6 13.9 186 231-472 3-191 (210)
12 PLN02348 phosphoribulokinase 99.9 1.5E-27 3.3E-32 247.6 16.1 185 204-452 34-234 (395)
13 cd02029 PRK_like Phosphoribulo 99.9 2E-27 4.4E-32 236.4 15.5 181 233-453 1-193 (277)
14 PRK15453 phosphoribulokinase; 99.9 7.4E-27 1.6E-31 233.8 16.4 188 229-453 3-199 (290)
15 cd02028 UMPK_like Uridine mono 99.9 7.1E-26 1.5E-30 211.7 12.0 166 233-450 1-167 (179)
16 PRK05480 uridine/cytidine kina 99.9 1.2E-23 2.5E-28 199.0 14.6 185 229-471 4-189 (209)
17 PRK06696 uridine kinase; Valid 99.9 2.5E-23 5.4E-28 199.8 16.6 195 228-475 19-215 (223)
18 PLN02318 phosphoribulokinase/u 99.9 1.7E-23 3.7E-28 226.1 14.4 166 229-452 63-229 (656)
19 cd02024 NRK1 Nicotinamide ribo 99.9 2.6E-24 5.6E-29 204.1 6.6 177 233-454 1-186 (187)
20 TIGR00235 udk uridine kinase. 99.9 2.6E-22 5.5E-27 190.3 15.4 188 229-474 4-192 (207)
21 cd02023 UMPK Uridine monophosp 99.9 5.6E-22 1.2E-26 185.7 15.1 183 233-473 1-184 (198)
22 PRK07429 phosphoribulokinase; 99.9 6.3E-22 1.4E-26 202.1 15.9 171 228-452 5-176 (327)
23 PRK07667 uridine kinase; Provi 99.9 1.1E-21 2.4E-26 185.0 15.0 176 230-467 16-192 (193)
24 PRK09270 nucleoside triphospha 99.9 5.3E-21 1.2E-25 184.4 18.1 190 229-472 31-223 (229)
25 cd02026 PRK Phosphoribulokinas 99.9 2.3E-21 5.1E-26 193.2 15.7 166 233-452 1-167 (273)
26 PRK06547 hypothetical protein; 99.7 4.6E-17 1E-21 152.3 12.9 154 229-468 13-171 (172)
27 KOG4203 Armadillo/beta-Catenin 99.6 8E-16 1.7E-20 164.2 10.9 180 228-454 41-228 (473)
28 KOG2702 Predicted panthothenat 99.6 2.9E-15 6.3E-20 146.6 12.2 164 231-433 119-292 (323)
29 KOG3308 Uncharacterized protei 99.5 4.9E-15 1.1E-19 142.2 4.2 166 230-453 3-176 (225)
30 PRK08233 hypothetical protein; 99.4 3.6E-12 7.7E-17 116.4 11.3 146 230-450 2-149 (182)
31 COG3954 PrkB Phosphoribulokina 99.3 9.3E-12 2E-16 119.7 12.6 189 232-453 6-199 (289)
32 cd02020 CMPK Cytidine monophos 98.6 3.2E-07 7E-12 80.6 10.0 33 233-270 1-33 (147)
33 PRK06762 hypothetical protein; 98.6 4.5E-07 9.7E-12 82.6 10.2 38 231-271 2-39 (166)
34 cd02022 DPCK Dephospho-coenzym 98.4 6.6E-08 1.4E-12 90.2 1.4 108 233-361 1-114 (179)
35 PRK13477 bifunctional pantoate 98.4 4.2E-07 9.1E-12 98.7 6.5 85 229-331 282-370 (512)
36 TIGR02173 cyt_kin_arch cytidyl 98.4 3E-06 6.5E-11 76.7 10.6 36 232-272 1-36 (171)
37 PF13207 AAA_17: AAA domain; P 98.3 4.2E-07 9.1E-12 78.0 3.6 34 233-271 1-34 (121)
38 PF00448 SRP54: SRP54-type pro 98.1 4.5E-06 9.8E-11 80.0 6.1 52 231-282 1-53 (196)
39 TIGR00017 cmk cytidylate kinas 98.1 8.7E-06 1.9E-10 79.2 8.1 38 231-273 2-39 (217)
40 PRK00081 coaE dephospho-CoA ki 98.1 3E-06 6.4E-11 80.4 4.2 36 231-272 2-37 (194)
41 PRK09435 membrane ATPase/prote 98.1 8.2E-06 1.8E-10 84.4 7.4 56 204-270 40-95 (332)
42 PRK07261 topology modulation p 98.0 2.3E-05 5E-10 73.1 9.3 35 233-272 2-36 (171)
43 PRK14734 coaE dephospho-CoA ki 98.0 3.7E-06 8E-11 80.5 4.0 67 232-308 2-73 (200)
44 PRK04182 cytidylate kinase; Pr 98.0 1.2E-05 2.6E-10 73.2 7.0 37 232-273 1-37 (180)
45 PRK04040 adenylate kinase; Pro 98.0 0.00017 3.8E-09 68.5 14.8 40 231-273 2-41 (188)
46 PRK14730 coaE dephospho-CoA ki 97.9 8E-06 1.7E-10 77.9 3.9 36 232-272 2-37 (195)
47 PRK13808 adenylate kinase; Pro 97.9 4.6E-05 9.9E-10 79.1 9.3 34 234-272 3-36 (333)
48 PF01121 CoaE: Dephospho-CoA k 97.9 1.4E-05 3E-10 75.9 4.6 154 232-445 1-163 (180)
49 PRK14733 coaE dephospho-CoA ki 97.8 1.2E-05 2.7E-10 77.8 3.7 70 229-308 4-77 (204)
50 TIGR03499 FlhF flagellar biosy 97.8 6.8E-05 1.5E-09 75.5 9.0 46 230-275 193-240 (282)
51 PRK10751 molybdopterin-guanine 97.8 3.3E-05 7.1E-10 73.2 5.9 40 229-268 4-43 (173)
52 TIGR00152 dephospho-CoA kinase 97.8 1.3E-05 2.8E-10 75.1 3.0 34 233-271 1-34 (188)
53 PF01583 APS_kinase: Adenylyls 97.8 2.7E-05 5.9E-10 72.7 5.0 42 230-271 1-42 (156)
54 PF03308 ArgK: ArgK protein; 97.8 3.2E-05 6.9E-10 77.8 5.4 40 229-268 27-66 (266)
55 PRK05541 adenylylsulfate kinas 97.7 3.2E-05 7E-10 71.3 4.8 42 229-270 5-46 (176)
56 PRK06217 hypothetical protein; 97.7 2.5E-05 5.5E-10 72.9 4.0 36 233-273 3-38 (183)
57 TIGR01425 SRP54_euk signal rec 97.7 5.3E-05 1.2E-09 80.9 6.9 48 229-276 98-145 (429)
58 COG1102 Cmk Cytidylate kinase 97.7 0.00021 4.5E-09 67.7 10.0 37 232-273 1-37 (179)
59 PRK00889 adenylylsulfate kinas 97.7 5.3E-05 1.2E-09 69.8 5.6 41 230-270 3-43 (175)
60 PRK03846 adenylylsulfate kinas 97.7 5.4E-05 1.2E-09 71.7 5.7 44 228-271 21-64 (198)
61 cd02019 NK Nucleoside/nucleoti 97.7 5.1E-05 1.1E-09 60.7 4.6 41 233-275 1-45 (69)
62 TIGR00064 ftsY signal recognit 97.7 8E-05 1.7E-09 74.9 6.8 46 229-274 70-115 (272)
63 COG1703 ArgK Putative periplas 97.7 5.3E-05 1.1E-09 77.5 5.3 40 229-268 49-88 (323)
64 PRK14732 coaE dephospho-CoA ki 97.7 2.4E-05 5.1E-10 75.0 2.6 66 233-308 1-71 (196)
65 PRK14528 adenylate kinase; Pro 97.6 0.00032 7E-09 66.1 9.9 35 233-272 3-37 (186)
66 PRK11860 bifunctional 3-phosph 97.6 0.00018 4E-09 80.4 9.6 42 229-275 440-481 (661)
67 TIGR00455 apsK adenylylsulfate 97.6 9E-05 2E-09 69.0 5.5 43 229-271 16-58 (184)
68 PF13671 AAA_33: AAA domain; P 97.6 3.9E-05 8.5E-10 67.4 2.9 35 233-272 1-35 (143)
69 TIGR01313 therm_gnt_kin carboh 97.6 0.00019 4.1E-09 65.2 7.4 35 234-273 1-35 (163)
70 cd03115 SRP The signal recogni 97.6 9.4E-05 2E-09 67.9 5.5 41 232-272 1-41 (173)
71 PRK10416 signal recognition pa 97.6 0.0001 2.2E-09 75.9 6.1 45 229-273 112-156 (318)
72 PRK03333 coaE dephospho-CoA ki 97.6 9.4E-05 2E-09 78.0 6.1 67 232-308 2-73 (395)
73 TIGR03575 selen_PSTK_euk L-ser 97.6 6.8E-05 1.5E-09 78.0 4.5 42 233-274 1-43 (340)
74 TIGR00750 lao LAO/AO transport 97.6 0.00012 2.5E-09 74.2 6.0 43 229-271 32-74 (300)
75 PRK14737 gmk guanylate kinase; 97.6 0.00038 8.2E-09 66.1 9.1 27 229-255 2-28 (186)
76 PF03205 MobB: Molybdopterin g 97.5 0.00012 2.6E-09 66.7 5.1 36 233-268 2-38 (140)
77 PRK10867 signal recognition pa 97.5 0.00014 3E-09 77.9 6.1 54 229-282 98-153 (433)
78 PRK08118 topology modulation p 97.5 7.5E-05 1.6E-09 69.5 3.6 35 233-272 3-37 (167)
79 COG1763 MobB Molybdopterin-gua 97.5 0.0001 2.3E-09 69.2 4.5 36 231-266 2-37 (161)
80 COG0529 CysC Adenylylsulfate k 97.5 0.00015 3.1E-09 69.7 5.3 42 229-270 21-62 (197)
81 PRK14974 cell division protein 97.5 0.00019 4.1E-09 74.6 6.5 46 229-274 138-183 (336)
82 cd00227 CPT Chloramphenicol (C 97.5 9E-05 1.9E-09 68.7 3.6 39 232-273 3-41 (175)
83 COG0378 HypB Ni2+-binding GTPa 97.5 0.00022 4.8E-09 69.1 6.4 50 229-279 10-60 (202)
84 PRK09518 bifunctional cytidyla 97.5 0.0017 3.6E-08 73.4 14.4 38 233-275 3-40 (712)
85 cd02021 GntK Gluconate kinase 97.5 0.00011 2.3E-09 65.8 3.9 36 233-273 1-36 (150)
86 PRK11889 flhF flagellar biosyn 97.5 0.00016 3.5E-09 77.0 5.8 75 229-312 239-316 (436)
87 COG0541 Ffh Signal recognition 97.5 0.00023 4.9E-09 76.0 6.9 124 228-366 97-230 (451)
88 cd01672 TMPK Thymidine monopho 97.5 0.00016 3.5E-09 66.3 5.0 37 232-268 1-37 (200)
89 PRK12726 flagellar biosynthesi 97.4 0.00098 2.1E-08 70.7 11.2 75 229-312 204-281 (407)
90 PRK00771 signal recognition pa 97.4 0.00018 4E-09 77.1 5.9 54 229-282 93-147 (437)
91 TIGR00176 mobB molybdopterin-g 97.4 0.00017 3.8E-09 66.6 4.8 36 233-268 1-36 (155)
92 PRK04220 2-phosphoglycerate ki 97.4 0.00017 3.8E-09 73.8 5.0 39 229-271 90-128 (301)
93 cd03116 MobB Molybdenum is an 97.4 0.00027 5.9E-09 65.8 5.7 38 232-269 2-39 (159)
94 TIGR00959 ffh signal recogniti 97.4 0.00024 5.2E-09 76.0 6.1 44 229-272 97-141 (428)
95 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00014 3E-09 67.1 3.7 35 233-272 1-35 (183)
96 cd02027 APSK Adenosine 5'-phos 97.4 0.00018 3.8E-09 65.6 4.3 39 233-271 1-39 (149)
97 PF13238 AAA_18: AAA domain; P 97.4 0.00013 2.8E-09 62.3 3.2 22 234-255 1-22 (129)
98 PRK14731 coaE dephospho-CoA ki 97.4 0.0002 4.3E-09 68.8 4.7 36 229-270 3-38 (208)
99 PRK03839 putative kinase; Prov 97.4 0.00018 4E-09 66.6 4.1 35 233-272 2-36 (180)
100 PRK13768 GTPase; Provisional 97.3 0.00028 6.2E-09 69.9 5.7 38 231-268 2-39 (253)
101 PRK00131 aroK shikimate kinase 97.3 0.00016 3.5E-09 65.2 3.6 37 230-271 3-39 (175)
102 TIGR03574 selen_PSTK L-seryl-t 97.3 0.00019 4.1E-09 70.2 4.3 38 233-270 1-38 (249)
103 TIGR01360 aden_kin_iso1 adenyl 97.3 0.00015 3.2E-09 66.7 3.1 36 232-272 4-39 (188)
104 PLN02200 adenylate kinase fami 97.3 0.00024 5.3E-09 69.8 4.7 40 228-272 40-79 (234)
105 PF03029 ATP_bind_1: Conserved 97.3 0.00016 3.5E-09 71.4 3.4 33 236-268 1-33 (238)
106 PF01591 6PF2K: 6-phosphofruct 97.3 0.0067 1.5E-07 59.8 14.7 42 229-270 10-51 (222)
107 PLN02422 dephospho-CoA kinase 97.3 0.0002 4.3E-09 70.9 3.9 66 233-308 3-73 (232)
108 COG0563 Adk Adenylate kinase a 97.3 0.00017 3.6E-09 68.4 3.2 37 233-274 2-38 (178)
109 cd03114 ArgK-like The function 97.3 0.00031 6.8E-09 64.3 4.7 36 233-268 1-36 (148)
110 PF06414 Zeta_toxin: Zeta toxi 97.3 0.00028 6E-09 66.9 4.3 43 228-272 12-54 (199)
111 TIGR00101 ureG urease accessor 97.3 0.00045 9.8E-09 66.2 5.8 42 231-273 1-42 (199)
112 smart00382 AAA ATPases associa 97.3 0.00025 5.4E-09 59.1 3.6 42 232-273 3-44 (148)
113 PRK00091 miaA tRNA delta(2)-is 97.2 0.00029 6.3E-09 72.3 4.5 38 230-272 3-42 (307)
114 PRK14490 putative bifunctional 97.2 0.00041 9E-09 72.3 5.4 37 230-267 4-40 (369)
115 PRK12723 flagellar biosynthesi 97.2 0.00053 1.1E-08 72.6 6.2 48 229-276 172-223 (388)
116 PRK14493 putative bifunctional 97.2 0.0005 1.1E-08 69.5 5.5 36 233-269 3-38 (274)
117 KOG3354 Gluconate kinase [Carb 97.2 0.0018 3.9E-08 61.3 8.5 53 229-287 10-62 (191)
118 COG1419 FlhF Flagellar GTP-bin 97.1 0.0014 3E-08 69.7 8.2 73 231-312 203-280 (407)
119 PRK12338 hypothetical protein; 97.1 0.00046 1E-08 71.3 4.4 37 230-271 3-39 (319)
120 cd01120 RecA-like_NTPases RecA 97.1 0.00063 1.4E-08 59.6 4.7 39 233-271 1-39 (165)
121 TIGR00041 DTMP_kinase thymidyl 97.1 0.00086 1.9E-08 62.4 5.8 38 231-268 3-40 (195)
122 PRK01184 hypothetical protein; 97.1 0.00038 8.3E-09 64.5 3.5 35 232-272 2-36 (184)
123 PRK12724 flagellar biosynthesi 97.1 0.00062 1.3E-08 72.9 5.4 45 229-273 221-266 (432)
124 PRK14527 adenylate kinase; Pro 97.1 0.00036 7.8E-09 65.5 3.2 39 230-273 5-43 (191)
125 PRK09825 idnK D-gluconate kina 97.1 0.00073 1.6E-08 63.5 5.3 38 232-274 4-41 (176)
126 COG0237 CoaE Dephospho-CoA kin 97.1 0.00043 9.4E-09 67.0 3.8 36 231-272 2-37 (201)
127 PLN02840 tRNA dimethylallyltra 97.1 0.0011 2.4E-08 70.8 7.2 67 229-305 19-96 (421)
128 cd01983 Fer4_NifH The Fer4_Nif 97.1 0.00077 1.7E-08 53.9 4.6 34 233-266 1-34 (99)
129 PRK00698 tmk thymidylate kinas 97.1 0.00087 1.9E-08 62.5 5.6 35 231-265 3-37 (205)
130 PRK14530 adenylate kinase; Pro 97.1 0.00055 1.2E-08 65.6 4.2 36 233-273 5-40 (215)
131 COG0283 Cmk Cytidylate kinase 97.0 0.00051 1.1E-08 67.5 3.6 38 231-273 4-41 (222)
132 PRK14489 putative bifunctional 97.0 0.00087 1.9E-08 69.9 5.6 40 230-269 204-243 (366)
133 PRK12727 flagellar biosynthesi 97.0 0.0028 6E-08 69.8 9.6 47 231-277 350-398 (559)
134 cd01428 ADK Adenylate kinase ( 97.0 0.0006 1.3E-08 63.1 3.9 34 234-272 2-35 (194)
135 PRK06995 flhF flagellar biosyn 97.0 0.0011 2.5E-08 71.9 6.5 46 230-275 255-302 (484)
136 PTZ00088 adenylate kinase 1; P 97.0 0.00075 1.6E-08 66.4 4.5 40 229-273 4-43 (229)
137 PRK08356 hypothetical protein; 97.0 0.0009 1.9E-08 63.3 4.8 36 231-272 5-40 (195)
138 PRK05703 flhF flagellar biosyn 97.0 0.00088 1.9E-08 71.5 5.3 41 231-271 221-263 (424)
139 PRK00023 cmk cytidylate kinase 97.0 0.00061 1.3E-08 66.5 3.5 39 231-274 4-42 (225)
140 cd00464 SK Shikimate kinase (S 97.0 0.00074 1.6E-08 60.0 3.7 33 234-271 2-34 (154)
141 PHA02530 pseT polynucleotide k 96.9 0.00071 1.5E-08 67.4 3.8 37 231-271 2-38 (300)
142 PF07931 CPT: Chloramphenicol 96.9 0.00057 1.2E-08 64.8 2.9 38 232-272 2-39 (174)
143 PRK14531 adenylate kinase; Pro 96.9 0.00089 1.9E-08 62.7 4.1 37 232-273 3-39 (183)
144 PRK14722 flhF flagellar biosyn 96.9 0.0017 3.6E-08 68.6 6.6 47 230-276 136-184 (374)
145 PRK14494 putative molybdopteri 96.9 0.0013 2.8E-08 65.1 5.3 35 232-266 2-36 (229)
146 PRK14495 putative molybdopteri 96.9 0.0011 2.4E-08 71.2 5.2 36 233-268 3-38 (452)
147 COG1136 SalX ABC-type antimicr 96.9 0.001 2.2E-08 65.8 4.4 51 233-283 33-83 (226)
148 cd02034 CooC The accessory pro 96.9 0.0016 3.6E-08 57.5 5.3 36 234-269 2-37 (116)
149 PRK06731 flhF flagellar biosyn 96.9 0.0035 7.5E-08 63.4 8.2 74 230-312 74-150 (270)
150 TIGR02322 phosphon_PhnN phosph 96.9 0.00087 1.9E-08 61.8 3.4 24 233-256 3-26 (179)
151 cd00009 AAA The AAA+ (ATPases 96.8 0.0018 3.8E-08 54.8 4.9 41 232-272 20-60 (151)
152 KOG1533 Predicted GTPase [Gene 96.8 0.001 2.2E-08 66.5 3.7 38 231-268 2-39 (290)
153 PRK12339 2-phosphoglycerate ki 96.8 0.0014 2.9E-08 63.2 4.3 37 230-270 2-38 (197)
154 PRK14532 adenylate kinase; Pro 96.8 0.0012 2.6E-08 61.4 3.9 35 234-273 3-37 (188)
155 PRK00300 gmk guanylate kinase; 96.8 0.00097 2.1E-08 62.7 3.2 25 231-255 5-29 (205)
156 TIGR01351 adk adenylate kinase 96.8 0.00097 2.1E-08 63.6 3.3 34 234-272 2-35 (210)
157 PLN02748 tRNA dimethylallyltra 96.8 0.0029 6.3E-08 68.5 7.2 67 229-305 20-97 (468)
158 KOG0780 Signal recognition par 96.8 0.0082 1.8E-07 63.8 10.1 80 229-312 99-180 (483)
159 COG4088 Predicted nucleotide k 96.8 0.0011 2.4E-08 65.3 3.5 35 233-267 3-37 (261)
160 PF08433 KTI12: Chromatin asso 96.7 0.0014 3.1E-08 66.0 4.3 39 233-271 3-41 (270)
161 PRK12269 bifunctional cytidyla 96.7 0.0013 2.8E-08 76.0 4.0 41 230-275 33-73 (863)
162 PRK02496 adk adenylate kinase; 96.7 0.0017 3.8E-08 60.3 4.0 35 233-272 3-37 (184)
163 PTZ00451 dephospho-CoA kinase; 96.7 0.0019 4.2E-08 64.3 4.5 68 232-308 2-74 (244)
164 COG1618 Predicted nucleotide k 96.7 0.0028 6.1E-08 60.2 5.3 35 229-263 3-37 (179)
165 PLN02165 adenylate isopentenyl 96.7 0.0016 3.4E-08 67.8 4.0 36 230-270 42-77 (334)
166 PLN02924 thymidylate kinase 96.6 0.0032 7E-08 61.5 5.8 39 228-266 13-51 (220)
167 COG1124 DppF ABC-type dipeptid 96.6 0.0014 3.1E-08 65.5 3.4 25 233-257 35-59 (252)
168 PRK06761 hypothetical protein; 96.6 0.0022 4.7E-08 65.3 4.7 34 232-265 4-37 (282)
169 PRK00279 adk adenylate kinase; 96.6 0.0022 4.8E-08 61.4 4.4 35 233-272 2-36 (215)
170 PRK07933 thymidylate kinase; V 96.6 0.0026 5.7E-08 61.5 5.0 36 233-268 2-37 (213)
171 TIGR02237 recomb_radB DNA repa 96.6 0.0077 1.7E-07 56.9 8.0 40 230-269 11-50 (209)
172 cd01394 radB RadB. The archaea 96.6 0.0032 7E-08 59.9 5.5 42 230-271 18-59 (218)
173 PRK13949 shikimate kinase; Pro 96.6 0.0015 3.3E-08 60.9 3.1 34 233-271 3-36 (169)
174 PRK14491 putative bifunctional 96.6 0.003 6.6E-08 70.2 5.9 39 230-268 9-47 (597)
175 PRK14723 flhF flagellar biosyn 96.6 0.011 2.3E-07 67.7 10.2 73 230-311 184-261 (767)
176 PF00004 AAA: ATPase family as 96.5 0.0024 5.2E-08 54.7 3.8 34 234-270 1-34 (132)
177 PRK05537 bifunctional sulfate 96.5 0.003 6.5E-08 69.9 5.4 42 229-270 390-432 (568)
178 PRK05506 bifunctional sulfate 96.5 0.0028 6.1E-08 70.6 5.3 44 229-272 458-501 (632)
179 PRK13947 shikimate kinase; Pro 96.5 0.0024 5.1E-08 58.2 3.9 33 234-271 4-36 (171)
180 TIGR00073 hypB hydrogenase acc 96.5 0.0039 8.4E-08 59.5 5.5 41 229-270 20-60 (207)
181 PRK11176 lipid transporter ATP 96.5 0.0043 9.3E-08 67.7 6.5 67 233-310 371-456 (582)
182 cd02040 NifH NifH gene encodes 96.5 0.0034 7.4E-08 61.3 5.2 37 233-269 3-39 (270)
183 TIGR01287 nifH nitrogenase iro 96.5 0.0034 7.4E-08 62.0 5.2 36 233-268 2-37 (275)
184 PRK05057 aroK shikimate kinase 96.5 0.0028 6.2E-08 59.1 4.2 34 232-270 5-38 (172)
185 TIGR03263 guanyl_kin guanylate 96.5 0.0016 3.5E-08 59.8 2.4 24 232-255 2-25 (180)
186 PRK10078 ribose 1,5-bisphospho 96.5 0.0017 3.8E-08 60.7 2.7 24 232-255 3-26 (186)
187 cd02117 NifH_like This family 96.5 0.0044 9.5E-08 59.1 5.5 36 233-268 2-37 (212)
188 COG0324 MiaA tRNA delta(2)-iso 96.5 0.007 1.5E-07 62.4 7.2 79 230-318 2-92 (308)
189 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0028 6.2E-08 66.6 4.3 54 229-283 76-144 (361)
190 cd01124 KaiC KaiC is a circadi 96.5 0.0042 9E-08 57.0 5.0 37 233-269 1-37 (187)
191 TIGR00174 miaA tRNA isopenteny 96.4 0.0022 4.8E-08 65.4 3.4 64 233-306 1-75 (287)
192 PF13521 AAA_28: AAA domain; P 96.4 0.0026 5.6E-08 58.0 3.4 21 234-254 2-22 (163)
193 COG2074 2-phosphoglycerate kin 96.4 0.0031 6.7E-08 63.7 4.1 39 228-270 86-124 (299)
194 COG0552 FtsY Signal recognitio 96.4 0.0043 9.3E-08 64.5 5.2 57 228-284 136-193 (340)
195 cd02032 Bchl_like This family 96.4 0.0044 9.6E-08 61.0 5.2 37 232-268 1-37 (267)
196 PRK14738 gmk guanylate kinase; 96.4 0.0032 6.9E-08 60.4 4.0 27 228-254 10-36 (206)
197 cd01131 PilT Pilus retraction 96.4 0.0049 1.1E-07 58.7 5.3 25 233-257 3-27 (198)
198 COG2274 SunT ABC-type bacterio 96.4 0.0023 4.9E-08 72.6 3.4 25 233-257 501-525 (709)
199 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.4 0.0029 6.2E-08 60.2 3.6 25 232-256 31-55 (218)
200 cd00071 GMPK Guanosine monopho 96.4 0.0021 4.5E-08 58.0 2.4 24 233-256 1-24 (137)
201 PRK13973 thymidylate kinase; P 96.3 0.006 1.3E-07 58.7 5.6 35 231-265 3-37 (213)
202 PF01656 CbiA: CobQ/CobB/MinD/ 96.3 0.0068 1.5E-07 55.6 5.5 39 233-271 1-39 (195)
203 PRK14721 flhF flagellar biosyn 96.3 0.0073 1.6E-07 64.7 6.5 49 230-278 190-240 (420)
204 PRK00625 shikimate kinase; Pro 96.3 0.0034 7.4E-08 59.2 3.5 34 233-271 2-35 (173)
205 smart00072 GuKc Guanylate kina 96.3 0.0081 1.7E-07 56.3 6.0 24 232-255 3-26 (184)
206 TIGR00960 3a0501s02 Type II (G 96.3 0.0034 7.3E-08 59.7 3.5 25 232-256 30-54 (216)
207 cd03224 ABC_TM1139_LivF_branch 96.3 0.003 6.5E-08 60.1 3.1 25 232-256 27-51 (222)
208 PRK09361 radB DNA repair and r 96.3 0.018 3.9E-07 55.2 8.5 41 230-270 22-62 (225)
209 PRK13185 chlL protochlorophyll 96.3 0.0068 1.5E-07 59.7 5.6 37 232-268 3-39 (270)
210 PRK03731 aroL shikimate kinase 96.3 0.0041 8.9E-08 56.9 3.8 34 233-271 4-37 (171)
211 cd03292 ABC_FtsE_transporter F 96.2 0.0038 8.2E-08 59.1 3.6 25 232-256 28-52 (214)
212 PRK13230 nitrogenase reductase 96.2 0.0062 1.3E-07 60.5 5.2 36 233-268 3-38 (279)
213 PHA00729 NTP-binding motif con 96.2 0.0062 1.3E-07 60.3 5.1 26 231-256 17-42 (226)
214 TIGR01281 DPOR_bchL light-inde 96.2 0.0062 1.3E-07 59.9 5.1 36 233-268 2-37 (268)
215 cd01122 GP4d_helicase GP4d_hel 96.2 0.029 6.3E-07 55.1 9.8 38 232-269 31-69 (271)
216 PF13191 AAA_16: AAA ATPase do 96.2 0.0069 1.5E-07 55.0 4.8 42 229-270 22-63 (185)
217 PF13555 AAA_29: P-loop contai 96.2 0.0058 1.2E-07 49.0 3.7 23 233-255 25-47 (62)
218 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.0065 1.4E-07 57.6 4.8 41 231-271 38-78 (226)
219 cd03225 ABC_cobalt_CbiO_domain 96.2 0.0034 7.4E-08 59.3 2.8 25 232-256 28-52 (211)
220 cd03259 ABC_Carb_Solutes_like 96.2 0.0045 9.8E-08 58.7 3.6 25 232-256 27-51 (213)
221 cd00820 PEPCK_HprK Phosphoenol 96.2 0.004 8.6E-08 55.0 2.9 21 232-252 16-36 (107)
222 PRK13975 thymidylate kinase; P 96.1 0.0053 1.2E-07 57.2 3.9 25 232-256 3-27 (196)
223 cd03261 ABC_Org_Solvent_Resist 96.1 0.0044 9.5E-08 59.8 3.4 25 232-256 27-51 (235)
224 PRK13946 shikimate kinase; Pro 96.1 0.005 1.1E-07 57.8 3.7 34 231-269 10-43 (184)
225 PRK13232 nifH nitrogenase redu 96.1 0.0083 1.8E-07 59.4 5.4 37 233-269 3-39 (273)
226 cd03256 ABC_PhnC_transporter A 96.1 0.0036 7.8E-08 60.3 2.7 25 232-256 28-52 (241)
227 PF07693 KAP_NTPase: KAP famil 96.1 0.015 3.3E-07 58.2 7.2 46 229-274 18-64 (325)
228 TIGR01166 cbiO cobalt transpor 96.1 0.0033 7.2E-08 58.7 2.4 25 232-256 19-43 (190)
229 cd03269 ABC_putative_ATPase Th 96.1 0.0047 1E-07 58.5 3.4 25 232-256 27-51 (210)
230 cd03263 ABC_subfamily_A The AB 96.1 0.0047 1E-07 58.8 3.4 25 232-256 29-53 (220)
231 cd03301 ABC_MalK_N The N-termi 96.1 0.0049 1.1E-07 58.4 3.5 25 232-256 27-51 (213)
232 TIGR02673 FtsE cell division A 96.1 0.0035 7.6E-08 59.4 2.5 25 232-256 29-53 (214)
233 COG1341 Predicted GTPase or GT 96.1 0.008 1.7E-07 63.8 5.3 40 229-268 71-110 (398)
234 COG1116 TauB ABC-type nitrate/ 96.1 0.0036 7.9E-08 62.7 2.6 43 233-275 31-87 (248)
235 cd03293 ABC_NrtD_SsuB_transpor 96.1 0.0049 1.1E-07 58.8 3.5 25 232-256 31-55 (220)
236 cd03226 ABC_cobalt_CbiO_domain 96.1 0.005 1.1E-07 58.2 3.5 25 232-256 27-51 (205)
237 PRK08727 hypothetical protein; 96.1 0.0072 1.6E-07 59.1 4.7 40 233-272 43-82 (233)
238 TIGR03608 L_ocin_972_ABC putat 96.1 0.0053 1.2E-07 57.7 3.6 25 232-256 25-49 (206)
239 COG1126 GlnQ ABC-type polar am 96.1 0.0036 7.9E-08 61.9 2.6 36 232-270 29-64 (240)
240 PRK11629 lolD lipoprotein tran 96.1 0.0051 1.1E-07 59.3 3.6 25 232-256 36-60 (233)
241 PRK14269 phosphate ABC transpo 96.1 0.0053 1.2E-07 59.8 3.7 25 232-256 29-53 (246)
242 TIGR03864 PQQ_ABC_ATP ABC tran 96.1 0.0052 1.1E-07 59.4 3.6 25 232-256 28-52 (236)
243 PF02374 ArsA_ATPase: Anion-tr 96.1 0.0083 1.8E-07 61.4 5.2 39 233-271 3-41 (305)
244 cd01130 VirB11-like_ATPase Typ 96.1 0.0052 1.1E-07 57.7 3.5 25 232-256 26-50 (186)
245 PRK13948 shikimate kinase; Pro 96.1 0.0061 1.3E-07 58.0 3.9 38 229-271 8-45 (182)
246 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.016 3.5E-07 55.4 6.9 40 230-269 18-63 (235)
247 COG1123 ATPase components of v 96.1 0.0045 9.7E-08 68.1 3.4 26 232-257 318-343 (539)
248 PRK08533 flagellar accessory p 96.0 0.01 2.2E-07 58.1 5.6 38 232-269 25-62 (230)
249 cd03260 ABC_PstB_phosphate_tra 96.0 0.0051 1.1E-07 58.9 3.3 24 232-255 27-50 (227)
250 PRK12377 putative replication 96.0 0.0072 1.6E-07 60.3 4.5 39 233-271 103-141 (248)
251 TIGR02315 ABC_phnC phosphonate 96.0 0.0041 8.9E-08 60.1 2.7 25 232-256 29-53 (243)
252 cd02042 ParA ParA and ParB of 96.0 0.01 2.2E-07 49.8 4.8 37 234-270 2-39 (104)
253 PF00005 ABC_tran: ABC transpo 96.0 0.0047 1E-07 54.0 2.8 36 232-270 12-47 (137)
254 cd03264 ABC_drug_resistance_li 96.0 0.0036 7.8E-08 59.3 2.2 25 233-257 27-51 (211)
255 cd03296 ABC_CysA_sulfate_impor 96.0 0.0056 1.2E-07 59.3 3.5 25 232-256 29-53 (239)
256 cd03258 ABC_MetN_methionine_tr 96.0 0.0044 9.6E-08 59.6 2.7 26 232-257 32-57 (233)
257 PRK08903 DnaA regulatory inact 96.0 0.01 2.2E-07 57.0 5.1 39 233-271 44-82 (227)
258 PRK10584 putative ABC transpor 96.0 0.006 1.3E-07 58.5 3.6 25 232-256 37-61 (228)
259 PRK11545 gntK gluconate kinase 96.0 0.0065 1.4E-07 56.3 3.6 30 237-271 1-30 (163)
260 COG4608 AppF ABC-type oligopep 96.0 0.0054 1.2E-07 62.1 3.3 26 232-257 40-65 (268)
261 PRK13235 nifH nitrogenase redu 96.0 0.011 2.4E-07 58.6 5.5 36 233-268 3-38 (274)
262 PRK14238 phosphate transporter 96.0 0.0072 1.6E-07 60.1 4.2 25 232-256 51-75 (271)
263 cd03265 ABC_DrrA DrrA is the A 96.0 0.0062 1.3E-07 58.2 3.6 25 232-256 27-51 (220)
264 PF07728 AAA_5: AAA domain (dy 96.0 0.0093 2E-07 52.6 4.4 35 234-271 2-36 (139)
265 PRK14250 phosphate ABC transpo 96.0 0.0057 1.2E-07 59.5 3.3 25 232-256 30-54 (241)
266 PHA02518 ParA-like protein; Pr 96.0 0.012 2.6E-07 55.0 5.3 39 233-271 2-41 (211)
267 COG0194 Gmk Guanylate kinase [ 96.0 0.026 5.6E-07 54.7 7.6 26 230-255 3-28 (191)
268 cd03235 ABC_Metallic_Cations A 95.9 0.004 8.8E-08 59.0 2.2 25 232-256 26-50 (213)
269 cd03219 ABC_Mj1267_LivG_branch 95.9 0.0042 9.1E-08 59.8 2.3 25 232-256 27-51 (236)
270 cd03229 ABC_Class3 This class 95.9 0.0045 9.7E-08 57.5 2.4 37 232-271 27-63 (178)
271 cd03222 ABC_RNaseL_inhibitor T 95.9 0.0047 1E-07 58.5 2.5 26 232-257 26-51 (177)
272 cd03262 ABC_HisP_GlnQ_permease 95.9 0.0048 1E-07 58.3 2.6 25 232-256 27-51 (213)
273 PRK10463 hydrogenase nickel in 95.9 0.01 2.2E-07 60.9 4.9 39 229-268 102-140 (290)
274 PRK11124 artP arginine transpo 95.9 0.0067 1.5E-07 58.8 3.5 25 232-256 29-53 (242)
275 cd03234 ABCG_White The White s 95.9 0.0068 1.5E-07 58.2 3.6 25 232-256 34-58 (226)
276 cd03233 ABC_PDR_domain1 The pl 95.9 0.0061 1.3E-07 57.9 3.2 40 232-271 34-73 (202)
277 PRK11022 dppD dipeptide transp 95.9 0.0061 1.3E-07 62.7 3.4 25 232-256 34-58 (326)
278 PRK05642 DNA replication initi 95.9 0.0092 2E-07 58.5 4.4 41 233-273 47-87 (234)
279 TIGR03797 NHPM_micro_ABC2 NHPM 95.9 0.013 2.8E-07 65.6 6.1 26 232-257 480-505 (686)
280 PRK12337 2-phosphoglycerate ki 95.9 0.0085 1.8E-07 65.0 4.5 39 229-271 253-291 (475)
281 TIGR02211 LolD_lipo_ex lipopro 95.9 0.005 1.1E-07 58.6 2.5 25 232-256 32-56 (221)
282 PRK09183 transposase/IS protei 95.9 0.009 2E-07 59.6 4.4 35 233-267 104-138 (259)
283 PRK11701 phnK phosphonate C-P 95.9 0.0063 1.4E-07 59.7 3.2 26 232-257 33-58 (258)
284 PRK13540 cytochrome c biogenes 95.9 0.0074 1.6E-07 57.0 3.5 25 232-256 28-52 (200)
285 cd03257 ABC_NikE_OppD_transpor 95.9 0.0049 1.1E-07 58.7 2.4 25 232-256 32-56 (228)
286 PF00406 ADK: Adenylate kinase 95.9 0.0065 1.4E-07 54.7 3.0 32 236-272 1-32 (151)
287 PRK11174 cysteine/glutathione 95.9 0.012 2.5E-07 64.5 5.5 24 232-255 377-400 (588)
288 PRK13541 cytochrome c biogenes 95.8 0.0075 1.6E-07 56.7 3.5 25 232-256 27-51 (195)
289 TIGR03410 urea_trans_UrtE urea 95.8 0.0051 1.1E-07 59.0 2.5 26 232-257 27-52 (230)
290 PRK04296 thymidine kinase; Pro 95.8 0.015 3.2E-07 55.2 5.5 34 232-265 3-36 (190)
291 PRK11264 putative amino-acid A 95.8 0.0077 1.7E-07 58.5 3.7 25 232-256 30-54 (250)
292 PRK08084 DNA replication initi 95.8 0.011 2.4E-07 57.9 4.8 38 233-270 47-84 (235)
293 cd03218 ABC_YhbG The ABC trans 95.8 0.0055 1.2E-07 58.8 2.6 25 232-256 27-51 (232)
294 PRK14526 adenylate kinase; Pro 95.8 0.0091 2E-07 58.0 4.1 34 234-272 3-36 (211)
295 PF13245 AAA_19: Part of AAA d 95.8 0.016 3.5E-07 47.7 4.9 35 233-267 12-50 (76)
296 PLN02674 adenylate kinase 95.8 0.0077 1.7E-07 60.2 3.6 38 231-273 31-68 (244)
297 PRK13695 putative NTPase; Prov 95.8 0.012 2.5E-07 54.4 4.6 30 233-262 2-31 (174)
298 PRK10744 pstB phosphate transp 95.8 0.0088 1.9E-07 58.9 3.9 25 232-256 40-64 (260)
299 cd03297 ABC_ModC_molybdenum_tr 95.8 0.0057 1.2E-07 58.2 2.5 25 232-256 24-48 (214)
300 PRK13648 cbiO cobalt transport 95.8 0.0078 1.7E-07 59.6 3.6 25 232-256 36-60 (269)
301 cd03252 ABCC_Hemolysin The ABC 95.8 0.0064 1.4E-07 58.6 2.9 25 232-256 29-53 (237)
302 PF13173 AAA_14: AAA domain 95.8 0.013 2.8E-07 51.7 4.5 40 232-272 3-42 (128)
303 TIGR02203 MsbA_lipidA lipid A 95.8 0.019 4.2E-07 62.3 6.9 26 232-257 359-384 (571)
304 cd03251 ABCC_MsbA MsbA is an e 95.8 0.0068 1.5E-07 58.2 3.0 25 232-256 29-53 (234)
305 cd00550 ArsA_ATPase Oxyanion-t 95.8 0.014 3E-07 57.9 5.2 38 233-270 2-39 (254)
306 COG1127 Ttg2A ABC-type transpo 95.8 0.011 2.3E-07 59.5 4.4 51 232-282 35-85 (263)
307 cd03266 ABC_NatA_sodium_export 95.8 0.0063 1.4E-07 57.8 2.7 25 232-256 32-56 (218)
308 TIGR02782 TrbB_P P-type conjug 95.8 0.012 2.6E-07 60.1 4.9 37 233-269 134-170 (299)
309 TIGR00972 3a0107s01c2 phosphat 95.8 0.0088 1.9E-07 58.2 3.8 25 232-256 28-52 (247)
310 PRK09493 glnQ glutamine ABC tr 95.8 0.0085 1.8E-07 58.0 3.6 25 232-256 28-52 (240)
311 TIGR00150 HI0065_YjeE ATPase, 95.8 0.0089 1.9E-07 54.6 3.5 25 232-256 23-47 (133)
312 PRK10908 cell division protein 95.8 0.0083 1.8E-07 57.4 3.5 25 232-256 29-53 (222)
313 PF06309 Torsin: Torsin; Inte 95.8 0.025 5.4E-07 51.5 6.3 36 226-261 48-83 (127)
314 cd03268 ABC_BcrA_bacitracin_re 95.7 0.0089 1.9E-07 56.5 3.6 25 232-256 27-51 (208)
315 cd03246 ABCC_Protease_Secretio 95.7 0.0083 1.8E-07 55.5 3.3 26 232-257 29-54 (173)
316 PRK13646 cbiO cobalt transport 95.7 0.0081 1.8E-07 60.2 3.5 25 232-256 34-58 (286)
317 PRK11300 livG leucine/isoleuci 95.7 0.0081 1.7E-07 58.6 3.4 25 232-256 32-56 (255)
318 TIGR02525 plasmid_TraJ plasmid 95.7 0.014 3E-07 61.7 5.3 37 233-269 151-187 (372)
319 COG4618 ArpD ABC-type protease 95.7 0.0066 1.4E-07 66.3 3.0 48 233-283 364-411 (580)
320 TIGR02324 CP_lyasePhnL phospho 95.7 0.0066 1.4E-07 58.0 2.7 26 232-257 35-60 (224)
321 PRK13233 nifH nitrogenase redu 95.7 0.014 3.1E-07 57.6 5.1 39 232-270 3-42 (275)
322 cd03247 ABCC_cytochrome_bd The 95.7 0.0088 1.9E-07 55.5 3.4 25 232-256 29-53 (178)
323 PRK11248 tauB taurine transpor 95.7 0.0061 1.3E-07 60.1 2.5 26 232-257 28-53 (255)
324 TIGR03375 type_I_sec_LssB type 95.7 0.016 3.4E-07 64.9 6.1 25 233-257 493-517 (694)
325 cd03295 ABC_OpuCA_Osmoprotecti 95.7 0.0067 1.4E-07 58.9 2.7 25 232-256 28-52 (242)
326 TIGR01184 ntrCD nitrate transp 95.7 0.0063 1.4E-07 58.9 2.5 25 232-256 12-36 (230)
327 TIGR03005 ectoine_ehuA ectoine 95.7 0.0084 1.8E-07 58.5 3.4 25 232-256 27-51 (252)
328 COG1120 FepC ABC-type cobalami 95.7 0.0087 1.9E-07 60.3 3.6 26 232-257 29-54 (258)
329 PRK10247 putative ABC transpor 95.7 0.0077 1.7E-07 58.0 3.1 25 232-256 34-58 (225)
330 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.009 1.9E-07 54.1 3.3 25 232-256 27-51 (144)
331 PRK15056 manganese/iron transp 95.7 0.0084 1.8E-07 59.6 3.4 25 232-256 34-58 (272)
332 PRK14247 phosphate ABC transpo 95.7 0.0065 1.4E-07 59.1 2.6 25 232-256 30-54 (250)
333 COG3265 GntK Gluconate kinase 95.7 0.013 2.9E-07 54.9 4.5 38 238-281 2-39 (161)
334 PRK10895 lipopolysaccharide AB 95.7 0.0065 1.4E-07 58.8 2.5 25 232-256 30-54 (241)
335 PRK09473 oppD oligopeptide tra 95.7 0.0079 1.7E-07 62.0 3.3 25 232-256 43-67 (330)
336 TIGR01277 thiQ thiamine ABC tr 95.7 0.0067 1.5E-07 57.7 2.6 26 232-257 25-50 (213)
337 cd04163 Era Era subfamily. Er 95.7 0.0097 2.1E-07 51.6 3.4 22 231-252 3-24 (168)
338 cd03214 ABC_Iron-Siderophores_ 95.7 0.0069 1.5E-07 56.4 2.6 26 232-257 26-51 (180)
339 PRK14242 phosphate transporter 95.7 0.0083 1.8E-07 58.5 3.3 25 232-256 33-57 (253)
340 cd03215 ABC_Carb_Monos_II This 95.7 0.0083 1.8E-07 55.9 3.1 35 232-269 27-61 (182)
341 PRK06067 flagellar accessory p 95.7 0.02 4.3E-07 55.4 5.9 42 229-270 23-64 (234)
342 cd03294 ABC_Pro_Gly_Bertaine T 95.7 0.0088 1.9E-07 59.4 3.5 25 232-256 51-75 (269)
343 COG1936 Predicted nucleotide k 95.7 0.008 1.7E-07 57.5 3.0 27 233-263 2-28 (180)
344 KOG1534 Putative transcription 95.7 0.012 2.6E-07 58.3 4.3 37 232-268 4-40 (273)
345 cd01129 PulE-GspE PulE/GspE Th 95.7 0.011 2.4E-07 59.2 4.2 35 233-269 82-116 (264)
346 cd02035 ArsA ArsA ATPase funct 95.7 0.015 3.2E-07 56.0 4.9 39 233-271 1-39 (217)
347 PRK13231 nitrogenase reductase 95.7 0.0093 2E-07 58.6 3.6 36 232-268 3-38 (264)
348 cd03248 ABCC_TAP TAP, the Tran 95.7 0.0078 1.7E-07 57.6 3.0 25 232-256 41-65 (226)
349 PF13401 AAA_22: AAA domain; P 95.7 0.011 2.4E-07 50.9 3.7 27 231-257 4-30 (131)
350 cd02033 BchX Chlorophyllide re 95.7 0.02 4.4E-07 59.5 6.1 42 229-270 29-70 (329)
351 PRK15093 antimicrobial peptide 95.7 0.0087 1.9E-07 61.5 3.5 25 232-256 34-58 (330)
352 PRK14274 phosphate ABC transpo 95.7 0.009 2E-07 58.6 3.4 25 232-256 39-63 (259)
353 cd03245 ABCC_bacteriocin_expor 95.7 0.0079 1.7E-07 57.2 2.9 25 232-256 31-55 (220)
354 TIGR01193 bacteriocin_ABC ABC- 95.7 0.023 4.9E-07 63.9 7.0 47 233-279 502-567 (708)
355 cd02036 MinD Bacterial cell di 95.7 0.019 4.1E-07 52.1 5.2 37 234-270 3-39 (179)
356 KOG0635 Adenosine 5'-phosphosu 95.6 0.015 3.2E-07 55.2 4.5 41 232-272 32-72 (207)
357 KOG1532 GTPase XAB1, interacts 95.6 0.014 3.1E-07 59.7 4.8 43 226-268 14-56 (366)
358 TIGR02323 CP_lyasePhnK phospho 95.6 0.0085 1.8E-07 58.4 3.1 25 232-256 30-54 (253)
359 TIGR02881 spore_V_K stage V sp 95.6 0.018 3.9E-07 56.9 5.5 31 229-259 40-70 (261)
360 cd03254 ABCC_Glucan_exporter_l 95.6 0.0078 1.7E-07 57.6 2.8 25 232-256 30-54 (229)
361 TIGR02868 CydC thiol reductant 95.6 0.0084 1.8E-07 64.7 3.4 48 232-279 362-427 (529)
362 TIGR03878 thermo_KaiC_2 KaiC d 95.6 0.018 3.8E-07 57.4 5.4 39 230-268 35-73 (259)
363 PRK13638 cbiO cobalt transport 95.6 0.0085 1.8E-07 59.4 3.1 25 232-256 28-52 (271)
364 PRK13647 cbiO cobalt transport 95.6 0.0097 2.1E-07 59.3 3.6 25 232-256 32-56 (274)
365 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.018 3.9E-07 55.2 5.3 40 230-269 19-58 (229)
366 PRK13632 cbiO cobalt transport 95.6 0.0098 2.1E-07 59.0 3.6 25 232-256 36-60 (271)
367 PRK13538 cytochrome c biogenes 95.6 0.0071 1.5E-07 57.3 2.4 26 232-257 28-53 (204)
368 COG1428 Deoxynucleoside kinase 95.6 0.0088 1.9E-07 58.8 3.1 26 231-256 4-29 (216)
369 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.6 0.0079 1.7E-07 58.0 2.8 26 232-257 30-55 (238)
370 TIGR01978 sufC FeS assembly AT 95.6 0.0089 1.9E-07 57.6 3.2 24 232-255 27-50 (243)
371 PRK14260 phosphate ABC transpo 95.6 0.012 2.6E-07 57.8 4.2 25 232-256 34-58 (259)
372 cd00984 DnaB_C DnaB helicase C 95.6 0.018 3.9E-07 55.4 5.3 39 231-269 13-52 (242)
373 PRK11308 dppF dipeptide transp 95.6 0.0092 2E-07 61.4 3.4 25 232-256 42-66 (327)
374 PRK14241 phosphate transporter 95.6 0.0075 1.6E-07 59.2 2.6 25 232-256 31-55 (258)
375 PRK13640 cbiO cobalt transport 95.6 0.0095 2.1E-07 59.6 3.4 26 232-257 34-59 (282)
376 COG0003 ArsA Predicted ATPase 95.6 0.019 4.1E-07 59.6 5.6 41 232-272 3-43 (322)
377 PLN02459 probable adenylate ki 95.6 0.012 2.6E-07 59.4 4.1 39 230-273 28-66 (261)
378 PF03266 NTPase_1: NTPase; In 95.6 0.017 3.6E-07 54.3 4.8 28 234-261 2-29 (168)
379 PRK10771 thiQ thiamine transpo 95.6 0.0074 1.6E-07 58.2 2.5 26 232-257 26-51 (232)
380 PRK13649 cbiO cobalt transport 95.6 0.0096 2.1E-07 59.2 3.4 25 232-256 34-58 (280)
381 PRK14267 phosphate ABC transpo 95.6 0.0074 1.6E-07 58.9 2.5 25 232-256 31-55 (253)
382 TIGR02769 nickel_nikE nickel i 95.6 0.0094 2E-07 58.9 3.3 25 232-256 38-62 (265)
383 cd03230 ABC_DR_subfamily_A Thi 95.6 0.0099 2.2E-07 55.0 3.2 25 232-256 27-51 (173)
384 cd03298 ABC_ThiQ_thiamine_tran 95.6 0.0073 1.6E-07 57.2 2.4 25 232-256 25-49 (211)
385 cd03238 ABC_UvrA The excision 95.6 0.0096 2.1E-07 56.3 3.1 20 232-251 22-41 (176)
386 PRK14256 phosphate ABC transpo 95.6 0.0086 1.9E-07 58.5 2.9 25 232-256 31-55 (252)
387 PRK11831 putative ABC transpor 95.6 0.0094 2E-07 59.1 3.2 25 232-256 34-58 (269)
388 PRK10619 histidine/lysine/argi 95.6 0.011 2.4E-07 58.0 3.6 25 232-256 32-56 (257)
389 PRK06893 DNA replication initi 95.6 0.017 3.6E-07 56.3 4.8 37 233-269 41-77 (229)
390 PRK09984 phosphonate/organopho 95.6 0.01 2.2E-07 58.4 3.4 25 232-256 31-55 (262)
391 cd03223 ABCD_peroxisomal_ALDP 95.6 0.0088 1.9E-07 55.2 2.7 26 232-257 28-53 (166)
392 TIGR00968 3a0106s01 sulfate AB 95.5 0.011 2.5E-07 57.3 3.6 25 232-256 27-51 (237)
393 PRK13643 cbiO cobalt transport 95.5 0.01 2.2E-07 59.6 3.4 26 232-257 33-58 (288)
394 PRK14240 phosphate transporter 95.5 0.012 2.7E-07 57.2 3.9 25 232-256 30-54 (250)
395 CHL00072 chlL photochlorophyll 95.5 0.018 3.9E-07 58.3 5.2 35 234-268 3-37 (290)
396 CHL00175 minD septum-site dete 95.5 0.024 5.1E-07 56.3 5.9 41 230-270 14-55 (281)
397 PRK11614 livF leucine/isoleuci 95.5 0.0071 1.5E-07 58.4 2.1 25 232-256 32-56 (237)
398 cd03267 ABC_NatA_like Similar 95.5 0.011 2.4E-07 57.4 3.5 25 232-256 48-72 (236)
399 PRK13645 cbiO cobalt transport 95.5 0.0083 1.8E-07 60.1 2.7 26 232-257 38-63 (289)
400 TIGR01188 drrA daunorubicin re 95.5 0.01 2.3E-07 59.9 3.4 25 232-256 20-44 (302)
401 TIGR03771 anch_rpt_ABC anchore 95.5 0.0083 1.8E-07 57.8 2.6 25 232-256 7-31 (223)
402 TIGR02524 dot_icm_DotB Dot/Icm 95.5 0.019 4E-07 60.3 5.3 26 232-257 135-160 (358)
403 cd03253 ABCC_ATM1_transporter 95.5 0.0095 2E-07 57.3 3.0 25 232-256 28-52 (236)
404 PRK14251 phosphate ABC transpo 95.5 0.009 1.9E-07 58.2 2.8 25 232-256 31-55 (251)
405 cd03244 ABCC_MRP_domain2 Domai 95.5 0.0094 2E-07 56.8 2.9 25 232-256 31-55 (221)
406 PRK10575 iron-hydroxamate tran 95.5 0.0074 1.6E-07 59.6 2.3 25 232-256 38-62 (265)
407 PRK01077 cobyrinic acid a,c-di 95.5 0.096 2.1E-06 56.3 10.8 35 234-268 6-41 (451)
408 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.5 0.011 2.4E-07 57.0 3.4 25 232-256 49-73 (224)
409 PRK13234 nifH nitrogenase redu 95.5 0.02 4.3E-07 58.0 5.4 38 232-269 5-42 (295)
410 PRK13543 cytochrome c biogenes 95.5 0.011 2.4E-07 56.4 3.4 25 232-256 38-62 (214)
411 COG3640 CooC CO dehydrogenase 95.5 0.017 3.8E-07 57.7 4.8 37 233-269 2-39 (255)
412 COG4619 ABC-type uncharacteriz 95.5 0.0099 2.2E-07 57.3 2.9 24 233-256 31-54 (223)
413 cd03228 ABCC_MRP_Like The MRP 95.5 0.0098 2.1E-07 54.9 2.8 26 232-257 29-54 (171)
414 cd01673 dNK Deoxyribonucleosid 95.5 0.011 2.3E-07 55.2 3.1 23 233-255 1-23 (193)
415 PRK13650 cbiO cobalt transport 95.5 0.011 2.5E-07 59.0 3.5 25 232-256 34-58 (279)
416 PRK15177 Vi polysaccharide exp 95.5 0.011 2.3E-07 56.9 3.2 26 232-257 14-39 (213)
417 PF05729 NACHT: NACHT domain 95.5 0.016 3.4E-07 51.3 4.0 27 233-259 2-28 (166)
418 PRK11247 ssuB aliphatic sulfon 95.5 0.0083 1.8E-07 59.6 2.5 25 232-256 39-63 (257)
419 cd03273 ABC_SMC2_euk Eukaryoti 95.5 0.012 2.7E-07 57.6 3.7 27 230-256 24-50 (251)
420 cd03216 ABC_Carb_Monos_I This 95.5 0.0085 1.8E-07 55.1 2.3 25 232-256 27-51 (163)
421 PRK14248 phosphate ABC transpo 95.5 0.011 2.3E-07 58.5 3.2 24 232-255 48-71 (268)
422 cd03369 ABCC_NFT1 Domain 2 of 95.5 0.011 2.4E-07 55.9 3.1 25 232-256 35-59 (207)
423 PRK14262 phosphate ABC transpo 95.5 0.0096 2.1E-07 58.0 2.8 25 232-256 30-54 (250)
424 PRK14235 phosphate transporter 95.5 0.011 2.5E-07 58.5 3.3 25 232-256 46-70 (267)
425 TIGR01189 ccmA heme ABC export 95.5 0.012 2.6E-07 55.4 3.3 25 232-256 27-51 (198)
426 PRK14253 phosphate ABC transpo 95.5 0.011 2.5E-07 57.4 3.3 25 232-256 30-54 (249)
427 PRK13652 cbiO cobalt transport 95.5 0.012 2.7E-07 58.6 3.6 25 232-256 31-55 (277)
428 cd03232 ABC_PDR_domain2 The pl 95.4 0.012 2.5E-07 55.5 3.2 24 232-255 34-57 (192)
429 PRK14244 phosphate ABC transpo 95.4 0.012 2.6E-07 57.4 3.4 25 232-256 32-56 (251)
430 PRK13539 cytochrome c biogenes 95.4 0.012 2.6E-07 56.0 3.2 25 232-256 29-53 (207)
431 PRK11153 metN DL-methionine tr 95.4 0.012 2.6E-07 60.9 3.5 25 232-256 32-56 (343)
432 TIGR01663 PNK-3'Pase polynucle 95.4 0.014 3E-07 64.2 4.2 38 228-270 366-403 (526)
433 cd03237 ABC_RNaseL_inhibitor_d 95.4 0.0095 2.1E-07 58.8 2.7 26 232-257 26-51 (246)
434 cd02030 NDUO42 NADH:Ubiquinone 95.4 0.012 2.5E-07 57.0 3.2 24 233-256 1-24 (219)
435 TIGR02770 nickel_nikD nickel i 95.4 0.0084 1.8E-07 57.8 2.2 25 232-256 13-37 (230)
436 PRK14273 phosphate ABC transpo 95.4 0.01 2.2E-07 58.1 2.8 25 232-256 34-58 (254)
437 PF00437 T2SE: Type II/IV secr 95.4 0.013 2.9E-07 57.7 3.6 34 232-265 128-161 (270)
438 PRK13637 cbiO cobalt transport 95.4 0.012 2.7E-07 59.0 3.5 25 232-256 34-58 (287)
439 TIGR00958 3a01208 Conjugate Tr 95.4 0.029 6.4E-07 63.3 6.8 26 232-257 508-533 (711)
440 COG3839 MalK ABC-type sugar tr 95.4 0.012 2.5E-07 61.6 3.3 24 233-256 31-54 (338)
441 PF06745 KaiC: KaiC; InterPro 95.4 0.022 4.7E-07 54.6 5.0 40 230-269 18-58 (226)
442 COG0125 Tmk Thymidylate kinase 95.4 0.026 5.6E-07 55.1 5.5 37 230-266 2-38 (208)
443 TIGR03411 urea_trans_UrtD urea 95.4 0.012 2.6E-07 56.9 3.2 25 232-256 29-53 (242)
444 PRK06526 transposase; Provisio 95.4 0.01 2.2E-07 59.3 2.7 38 232-269 99-136 (254)
445 PRK13639 cbiO cobalt transport 95.4 0.012 2.7E-07 58.5 3.3 25 232-256 29-53 (275)
446 cd01393 recA_like RecA is a b 95.4 0.021 4.5E-07 54.4 4.8 41 230-270 18-64 (226)
447 PRK14245 phosphate ABC transpo 95.4 0.013 2.7E-07 57.2 3.3 23 232-254 30-52 (250)
448 PRK14239 phosphate transporter 95.4 0.012 2.7E-07 57.2 3.2 24 232-255 32-55 (252)
449 PF01695 IstB_IS21: IstB-like 95.4 0.015 3.3E-07 54.9 3.7 40 232-271 48-87 (178)
450 cd03231 ABC_CcmA_heme_exporter 95.4 0.0099 2.1E-07 56.3 2.5 25 232-256 27-51 (201)
451 PF04665 Pox_A32: Poxvirus A32 95.4 0.02 4.2E-07 57.3 4.6 28 229-256 11-38 (241)
452 PF12846 AAA_10: AAA-like doma 95.4 0.022 4.9E-07 55.2 5.0 32 234-265 4-35 (304)
453 PRK13833 conjugal transfer pro 95.4 0.021 4.5E-07 59.3 5.0 37 233-269 146-182 (323)
454 PRK13548 hmuV hemin importer A 95.4 0.01 2.2E-07 58.5 2.5 25 232-256 29-53 (258)
455 cd02037 MRP-like MRP (Multiple 95.4 0.026 5.7E-07 51.8 5.1 36 235-270 4-39 (169)
456 COG4181 Predicted ABC-type tra 95.3 0.015 3.3E-07 56.3 3.6 51 233-283 38-88 (228)
457 COG1132 MdlB ABC-type multidru 95.3 0.012 2.5E-07 64.4 3.2 26 232-257 356-381 (567)
458 PRK14270 phosphate ABC transpo 95.3 0.012 2.5E-07 57.5 2.9 25 232-256 31-55 (251)
459 PF13614 AAA_31: AAA domain; P 95.3 0.032 7E-07 49.8 5.5 41 233-273 2-43 (157)
460 cd03300 ABC_PotA_N PotA is an 95.3 0.015 3.3E-07 56.1 3.7 26 232-257 27-52 (232)
461 PRK05800 cobU adenosylcobinami 95.3 0.018 3.9E-07 54.1 4.0 23 233-255 3-25 (170)
462 PRK07952 DNA replication prote 95.3 0.018 4E-07 57.3 4.3 39 233-271 101-139 (244)
463 cd03290 ABCC_SUR1_N The SUR do 95.3 0.012 2.6E-07 56.1 2.9 25 232-256 28-52 (218)
464 PRK15079 oligopeptide ABC tran 95.3 0.013 2.8E-07 60.5 3.3 25 232-256 48-72 (331)
465 PRK14249 phosphate ABC transpo 95.3 0.011 2.3E-07 57.8 2.6 25 232-256 31-55 (251)
466 TIGR02016 BchX chlorophyllide 95.3 0.025 5.5E-07 57.5 5.4 36 233-268 2-37 (296)
467 PF07724 AAA_2: AAA domain (Cd 95.3 0.025 5.5E-07 53.2 5.0 40 232-271 4-44 (171)
468 PRK05973 replicative DNA helic 95.3 0.025 5.4E-07 56.3 5.2 39 231-269 64-102 (237)
469 PF13086 AAA_11: AAA domain; P 95.3 0.023 4.9E-07 52.9 4.6 24 232-255 18-41 (236)
470 PRK10419 nikE nickel transport 95.3 0.014 2.9E-07 58.0 3.3 25 232-256 39-63 (268)
471 TIGR03371 cellulose_yhjQ cellu 95.3 0.028 6E-07 54.0 5.4 37 233-269 3-40 (246)
472 CHL00181 cbbX CbbX; Provisiona 95.3 0.024 5.1E-07 57.6 5.1 42 229-270 57-102 (287)
473 PRK14261 phosphate ABC transpo 95.3 0.013 2.9E-07 57.2 3.2 24 232-255 33-56 (253)
474 TIGR02982 heterocyst_DevA ABC 95.3 0.015 3.3E-07 55.6 3.5 25 232-256 32-56 (220)
475 PRK14237 phosphate transporter 95.3 0.012 2.7E-07 58.2 3.0 25 232-256 47-71 (267)
476 PRK14255 phosphate ABC transpo 95.3 0.014 3E-07 56.9 3.2 24 232-255 32-55 (252)
477 CHL00131 ycf16 sulfate ABC tra 95.3 0.013 2.7E-07 57.1 2.9 23 232-254 34-56 (252)
478 TIGR03873 F420-0_ABC_ATP propo 95.3 0.012 2.7E-07 57.6 2.9 25 232-256 28-52 (256)
479 TIGR02314 ABC_MetN D-methionin 95.3 0.014 3.1E-07 60.7 3.5 26 232-257 32-57 (343)
480 PRK08099 bifunctional DNA-bind 95.3 0.013 2.9E-07 62.2 3.3 27 230-256 218-244 (399)
481 PRK11432 fbpC ferric transport 95.3 0.015 3.1E-07 60.7 3.5 25 232-256 33-57 (351)
482 PRK13635 cbiO cobalt transport 95.3 0.015 3.2E-07 58.3 3.4 25 232-256 34-58 (279)
483 PRK14243 phosphate transporter 95.3 0.015 3.2E-07 57.5 3.4 25 232-256 37-61 (264)
484 PRK13894 conjugal transfer ATP 95.3 0.024 5.1E-07 58.6 5.0 37 233-269 150-186 (319)
485 cd03250 ABCC_MRP_domain1 Domai 95.2 0.013 2.8E-07 55.3 2.8 26 232-257 32-57 (204)
486 PRK09544 znuC high-affinity zi 95.2 0.011 2.3E-07 58.4 2.3 26 232-257 31-56 (251)
487 TIGR03015 pepcterm_ATPase puta 95.2 0.015 3.2E-07 56.7 3.2 26 231-256 43-68 (269)
488 PRK10253 iron-enterobactin tra 95.2 0.014 3E-07 57.7 3.0 25 232-256 34-58 (265)
489 PRK13634 cbiO cobalt transport 95.2 0.015 3.3E-07 58.4 3.4 25 232-256 34-58 (290)
490 cd00267 ABC_ATPase ABC (ATP-bi 95.2 0.017 3.6E-07 52.3 3.4 25 232-256 26-50 (157)
491 PRK13851 type IV secretion sys 95.2 0.015 3.2E-07 60.8 3.4 25 232-256 163-187 (344)
492 PRK13641 cbiO cobalt transport 95.2 0.015 3.3E-07 58.3 3.4 37 232-271 34-70 (287)
493 PF13479 AAA_24: AAA domain 95.2 0.022 4.7E-07 54.9 4.3 34 229-270 1-34 (213)
494 TIGR03740 galliderm_ABC gallid 95.2 0.012 2.6E-07 56.3 2.5 25 232-256 27-51 (223)
495 PRK14268 phosphate ABC transpo 95.2 0.015 3.3E-07 57.1 3.2 25 232-256 39-63 (258)
496 PF10662 PduV-EutP: Ethanolami 95.2 0.012 2.6E-07 54.5 2.3 42 233-274 3-44 (143)
497 PRK11231 fecE iron-dicitrate t 95.2 0.012 2.6E-07 57.6 2.5 25 232-256 29-53 (255)
498 PRK13631 cbiO cobalt transport 95.2 0.013 2.7E-07 60.3 2.7 26 232-257 53-78 (320)
499 PRK11144 modC molybdate transp 95.2 0.016 3.4E-07 60.2 3.4 25 232-256 25-49 (352)
500 cd03213 ABCG_EPDR ABCG transpo 95.2 0.014 3E-07 55.1 2.8 37 232-271 36-74 (194)
No 1
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=100.00 E-value=2.9e-91 Score=724.52 Aligned_cols=394 Identities=69% Similarity=1.115 Sum_probs=362.4
Q ss_pred cchhcccCCCCCCCcccCCCCccccccccCCCCccccccCcccccCCCCCCCCCCccccCCCCCCCCCCchhhHHHhhcc
Q 044604 74 SSLFVQTKSNPSHKFSHMPTHLSKSEALSAGTGCSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERAQVSSVQDLFAFICS 153 (476)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (476)
+..-.-.++++++|+|+++||+|++ |+||||||++||+++++++ +..+++++++++++||+||||+|||||||+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (460)
T PLN03046 62 DRVAASCSSYPSSKLSSRKTHLSCP-----GCGCSWIQDNSMVHDYATT-AATSKRCSSLPTSSPALVSSVQDLYEFICS 135 (460)
T ss_pred ccccccccccccccccccccccccC-----Ccccchhccccccchhhhh-cccCCccccCCCCCccccccHHHHHHHHhc
Confidence 3444457789999999999999999 9999999999999999866 557899999999999999999999999999
Q ss_pred CCCCCccccchhhhcccHHHHHHHHHHHHHHhcCCCCCCCccccce--eeeeeHHHHHHHHHhhhhcCCccccccCCCCc
Q 044604 154 GPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKVG--FFTTTYLFSCGVKIKFLSMCPSLRMEKIYLPW 231 (476)
Q Consensus 154 ~~l~~~~~f~~e~~~~~i~~w~~l~~~l~~l~~lne~~l~~~~~~r--~~ylPL~~~l~~~v~~~~~~~~~~~~~~~~~P 231 (476)
|||+++++++.|+|+++||+|+.+|.+||++++||+..|++..+.+ .+|+||+.||..++.+ |+++.+++..++|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ylPl~~w~~~~i~~---h~~~~~~~~~~~P 212 (460)
T PLN03046 136 GPLVDKIGYTPEKIAQSIDKWLLYGSQLCRLFQLNELKLTEPQKARIYHYYIPVFIWCEDQIAE---HRSKFKDGDDIPP 212 (460)
T ss_pred CccchhccCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999998877765543 4566999999888887 5544333345689
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHHHHh
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAI 311 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~L 311 (476)
+||||+|+||||||||++.|..+|+..|.++.+|++||||++.+++.++++.+|.|+|+.+||.|++||+.++.++|.+|
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e~L~~L 292 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNAGSHDLQFSVETLEAL 292 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchhhcccCCCccccHhhHHHHHHHH
Confidence 99999999999999999999999987788899999999999999999999999999999999999999999999999998
Q ss_pred hhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhhhhh
Q 044604 312 SKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAW 391 (476)
Q Consensus 312 k~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~Dlw 391 (476)
.+.+++|+.|.+|+|||++|+|+|||.+++.|..+.+|.|||||||||+|+.|...+.++..|++++.||++|++|+++|
T Consensus 293 ~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~l~~VN~~L~~Y~~~w 372 (460)
T PLN03046 293 SKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEAYYDAW 372 (460)
T ss_pred HHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChhHHHHHHHHHHHHHHH
Confidence 65446889999999999999999999999889999899999999999999999998888888999999999999999999
Q ss_pred hhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEEEeCC
Q 044604 392 DKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIEIDD 471 (476)
Q Consensus 392 ~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl~id~ 471 (476)
..++|.||+|+++|++++++||+|||++||+.++.|||+|||.+|+++|||+|+.|++.+++.+|.+++++++|+|+||+
T Consensus 373 ~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~FV~~YmPaY~~y~~~L~~~~~~~~~~~~~L~i~Id~ 452 (460)
T PLN03046 373 DKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFVSRYLPAYKAYLPTLYAEGPSGSDPDHVLVIDIDE 452 (460)
T ss_pred HHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhhhHHHHHHHHHhccCCcccCCCceEEEEECC
Confidence 99999999999999999999999999999988888999999999999999999999999999988877778899999999
Q ss_pred CCCCC
Q 044604 472 GRNPI 476 (476)
Q Consensus 472 ~r~v~ 476 (476)
+|+||
T Consensus 453 ~R~~~ 457 (460)
T PLN03046 453 ERNPI 457 (460)
T ss_pred CCCcc
Confidence 99986
No 2
>PLN02796 D-glycerate 3-kinase
Probab=100.00 E-value=1.5e-76 Score=603.85 Aligned_cols=342 Identities=66% Similarity=1.092 Sum_probs=314.8
Q ss_pred cCCCCCCCCCCchhhHHHhhccCCCCCccccchhhhcccHHHHHHHHHHHHHHhcCCCCCCCccccc--eeeeeeHHHHH
Q 044604 132 SAIPTERAQVSSVQDLFAFICSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKV--GFFTTTYLFSC 209 (476)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~e~~~~~i~~w~~l~~~l~~l~~lne~~l~~~~~~--r~~ylPL~~~l 209 (476)
+.++++||+||||+|||||||+|||++++++++|+|++.|++|+.++.+||+++++++.++++..+. ..+|+|++.||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~P~~~~i 81 (347)
T PLN02796 2 SLFPSTPPDVSDVADLREFICSGPLISKLGLTAEDVAESIDEWIAHGLRLCRLLQFDELSLSASQKARVYHYYLPVYLWC 81 (347)
T ss_pred CCCCCCCCCcccHHHHHHHHhcCcchhhhCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHcCcHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999887654433 35677999999
Q ss_pred HHHHhhhhcCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCcc
Q 044604 210 GVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNAL 289 (476)
Q Consensus 210 ~~~v~~~~~~~~~~~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npL 289 (476)
...+.. |+++++++..++|++|||+|++|||||||++.|..+|...|.++..|++||||++..++.+++..+|.|+|
T Consensus 82 l~~l~~---~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~L 158 (347)
T PLN02796 82 EDQLEA---HRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNAL 158 (347)
T ss_pred HHHHHH---HHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhh
Confidence 999888 55544445556899999999999999999999999998767789999999999999999999989999999
Q ss_pred ccccCCCCCccHHHHHHHHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchh
Q 044604 290 LEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEV 369 (476)
Q Consensus 290 l~~rG~P~t~D~~lL~e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~ 369 (476)
+.+||.|+|||++++.++|++|+++.+.|+.|.+|+|||+.|+|+|||.+++.|..+.+|.|||||||||+|+.|...+.
T Consensus 159 l~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~ 238 (347)
T PLN02796 159 LELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDA 238 (347)
T ss_pred hhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHH
Confidence 99999999999999999999997532268899999999999999999999888999989999999999999999999888
Q ss_pred hhccCchhhHHhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhh
Q 044604 370 VKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLP 449 (476)
Q Consensus 370 ~~~~d~~l~~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~ 449 (476)
+...|+++..||++|++|++.|..++|.||+|+++|++++++||+|||++||+.++.|||+|||.+|+++|||+|+.|++
T Consensus 239 l~~~~~~l~~vN~~L~~y~~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~FV~~~mP~y~~y~~ 318 (347)
T PLN02796 239 VKAVDPQLEVVNKNLEAYYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVADFVSRYMPAYKAYLP 318 (347)
T ss_pred hhccChhHHHHHHHHHHHHHHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999889999999999999999999999999999888999999999999999999999999
Q ss_pred hhhhcCCCCCCCCceEEEEeCCCCCCC
Q 044604 450 TLYSEGPNGSDPEHTLIIEIDDGRNPI 476 (476)
Q Consensus 450 ~l~~~~P~~a~~~~~Lvl~id~~r~v~ 476 (476)
.+++.+|.++.+.++|+|+||++|+|+
T Consensus 319 ~l~~~~~~~~~~~~~L~i~id~~R~~~ 345 (347)
T PLN02796 319 GLYAEGPGGSDPDNVLVIEIDENRNPL 345 (347)
T ss_pred HHhcCCCCCCCCCCceEEEECCCCCcc
Confidence 999988877666889999999999985
No 3
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=100.00 E-value=9.5e-57 Score=427.61 Aligned_cols=246 Identities=66% Similarity=1.107 Sum_probs=228.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc---CCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHH
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVT---GRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLS 304 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~---G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL 304 (476)
.+-|+|||++||||||||||+.+|...|.+. ...++.+|+||||++++++.++++.+|.|+|+++||.|||||+.++
T Consensus 28 ~~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll 107 (282)
T KOG2878|consen 28 DDVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLL 107 (282)
T ss_pred CcCcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHH
Confidence 3569999999999999999999999877543 2478999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCc---hhhHHh
Q 044604 305 VETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDP---QLETVN 381 (476)
Q Consensus 305 ~e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~---~l~~vn 381 (476)
.++|.+|-+.++.|..|.+|+||++.+.|.|||.+.++|+.+. |.+|||+||||+++.|.+.+..+..|+ +|..||
T Consensus 108 ~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~-P~~~~ifEGWmlGF~Pl~~~~v~a~d~l~Gdl~~VN 186 (282)
T KOG2878|consen 108 VEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVE-PLSVIIFEGWMLGFKPLPADVVKAVDPLQGDLEVVN 186 (282)
T ss_pred HHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccC-ceeEEEEecccccccccchhheeccCcccccHHHHh
Confidence 9999999765556678999999999999999999999999994 899999999999999998887777775 589999
Q ss_pred HHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhhcCCCCCCC
Q 044604 382 KNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDP 461 (476)
Q Consensus 382 ~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~~P~~a~~ 461 (476)
+.|.+|+|+|..|||+||+|++++...|++||+|||++||+....|||+|||.+|++||||+|+.|++.++..+|.++
T Consensus 187 ~kL~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~~~~kGMsDEeV~~FV~rYmP~Yk~YL~tl~~~~~lgs-- 264 (282)
T KOG2878|consen 187 KKLEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQDGQKGMSDEEVNDFVSRYMPAYKAYLPTLYAEGPLGS-- 264 (282)
T ss_pred hHHHHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHHhhccCCCHHHHHHHHHhhhhHHHhhhhhhhhcCCCCC--
Confidence 999999999989999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred CceEEEEeCCCCCCC
Q 044604 462 EHTLIIEIDDGRNPI 476 (476)
Q Consensus 462 ~~~Lvl~id~~r~v~ 476 (476)
.+.|.|.||++|.++
T Consensus 265 ~~~L~i~iDenRyp~ 279 (282)
T KOG2878|consen 265 DRVLAIDIDENRYPI 279 (282)
T ss_pred CeEEEEeecCCcccc
Confidence 589999999999875
No 4
>COG4240 Predicted kinase [General function prediction only]
Probab=100.00 E-value=3.8e-49 Score=381.37 Aligned_cols=237 Identities=36% Similarity=0.610 Sum_probs=210.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcC-CCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTG-RKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVET 307 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G-~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~ 307 (476)
++|+||||+|||||||||++..|..+|.+.| .+++.+|+||||+++++|.++++++ |||+++||.|||||+.++.++
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~--npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQV--NPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhc--CchhcccCCCCCCchHHHHHH
Confidence 5699999999999999999999999998887 5999999999999999999999874 899999999999999999999
Q ss_pred HHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhc---------cCchhh
Q 044604 308 LTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKA---------VDPQLE 378 (476)
Q Consensus 308 L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~---------~d~~l~ 378 (476)
|++|. +.|..|.+|+|||+.+.|.|||.+..+|+.. ++||+|+||||++++|.+...+.. ..+.+.
T Consensus 126 Lnai~---~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~--~vdivIlEGWfvGfrPidp~ll~~p~n~l~~~ed~a~~~ 200 (300)
T COG4240 126 LNAIA---RGGPTVPLPRFDKSAFAGAGDRAPQTQWIKF--EVDIVILEGWFVGFRPIDPELLAAPVNALEAAEDGAWRA 200 (300)
T ss_pred HHHHh---cCCCCcccccccchhccCCCCCCCcccceec--ceeEEEEeeeeeecccCCHHHhCCCCccchhhccccHHH
Confidence 99996 3556799999999999999999998888765 589999999999999997765541 124568
Q ss_pred HHhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhhcCCCC
Q 044604 379 TVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNG 458 (476)
Q Consensus 379 ~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~~P~~ 458 (476)
++|..|..|.++|.. ||.+|.|.++|..+++.||+|||++|+++...|||+|||..|+++|||.|+.|+..+.+-.-..
T Consensus 201 dvN~kLa~Y~pL~~r-IdsLillta~din~vy~WRlQqEhkliAr~~kgmsdeqv~efvn~ymrsl~lylq~ls~~~al~ 279 (300)
T COG4240 201 DVNDKLAPYRPLFDR-IDSLILLTAPDINTVYAWRLQQEHKLIARLAKGMSDEQVSEFVNAYMRSLELYLQRLSEWIALD 279 (300)
T ss_pred HHHhhhhhhHHHHHH-hhheeEecccchHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999998655 8999999999999999999999999999999999999999999999999999999988641111
Q ss_pred CCCCceEEEEeCCCCCC
Q 044604 459 SDPEHTLIIEIDDGRNP 475 (476)
Q Consensus 459 a~~~~~Lvl~id~~r~v 475 (476)
..+.|.|.+|.+|++
T Consensus 280 --~~a~leI~~d~nr~~ 294 (300)
T COG4240 280 --LPAILEIAVDLNRRR 294 (300)
T ss_pred --CcceeEEeecccccc
Confidence 235588888888864
No 5
>PRK05439 pantothenate kinase; Provisional
Probab=100.00 E-value=1.2e-44 Score=366.26 Aligned_cols=271 Identities=18% Similarity=0.223 Sum_probs=221.8
Q ss_pred CCCCCccccchhhhcccHHHHHHHHH---------HHHHHhcCCC-CCCCccccceeeeeeHHHHHHHHHhhhh-c--CC
Q 044604 154 GPLIDKMGFSKEKIGDSIDKWIAYNS---------YLCRLFQLNE-LYLTFPQKVGFFTTTYLFSCGVKIKFLS-M--CP 220 (476)
Q Consensus 154 ~~l~~~~~f~~e~~~~~i~~w~~l~~---------~l~~l~~lne-~~l~~~~~~r~~ylPL~~~l~~~v~~~~-~--~~ 220 (476)
..+++|..|+|++ |++|+. +|.++.|+|+ .++++++ ++|+||+++|+.++.+.. . ..
T Consensus 5 ~~~~~~~~~~r~~-------w~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~v~---~iy~plarli~~~~~~~~~~~~~~ 74 (311)
T PRK05439 5 NEFSPYLEFSREQ-------WAALRDSTPLTLTEEELERLRGLNDPISLEEVA---EIYLPLSRLLNLYVAANQRLQAAL 74 (311)
T ss_pred cCCCCceeECHHH-------HHHHHhcCCCCCCHHHHHHhhcCCCCCCHHHHH---HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4578999999999 999974 9999999997 4788887 999999999999987731 1 11
Q ss_pred ccc-cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc--CCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCC
Q 044604 221 SLR-MEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVT--GRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAG 297 (476)
Q Consensus 221 ~~~-~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~--G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~ 297 (476)
..| +....+.|+||||+|++||||||+|+.|+.+|+.+ |.+|.+|++||||++++++.+ +++++++|+|+
T Consensus 75 ~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~-------~~l~~~kg~Pe 147 (311)
T PRK05439 75 EQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEE-------RGLMKRKGFPE 147 (311)
T ss_pred HHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhh-------hhccccCCCcc
Confidence 122 33456789999999999999999999999999875 678999999999999987754 15788889999
Q ss_pred CccHHHHHHHHHHhhhhhcCCce-EEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCch
Q 044604 298 SHDLQLSVETLTAISKLTKEGTK-MKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQ 376 (476)
Q Consensus 298 t~D~~lL~e~L~~Lk~~~k~G~~-v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~ 376 (476)
|||+++|.++|..|+ +|+. +.+|+|||.+++ +.+++ ...+ .+.+|||||||++++.+..+
T Consensus 148 s~D~~~l~~~L~~Lk----~G~~~v~~P~Yd~~~~d----~~~~~-~~~v-~~~dIvIVEGi~~L~~~~~~--------- 208 (311)
T PRK05439 148 SYDMRALLRFLSDVK----SGKPNVTAPVYSHLIYD----IVPGE-KQTV-DQPDILIVEGLNVLQTGQNH--------- 208 (311)
T ss_pred cccHHHHHHHHHHHH----cCCCeEEeeeEEeecCC----cCCCc-eEEe-CCCCEEEEcCchhccCcccc---------
Confidence 999999999999994 7875 999999999865 55443 2345 56699999999999865420
Q ss_pred hhHHhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHHhHHh
Q 044604 377 LETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAG----------NPGMSDEEVKDFVSRYLPAYHA 446 (476)
Q Consensus 377 l~~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~----------~~GmS~EeV~~Fv~r~~Paye~ 446 (476)
....+++++|+ ++|||+ +.+.+++|+++|+.++|++. ++||+++++.+++..+|.. .
T Consensus 209 ---~~~~l~d~~D~-~IfVda-------~~~~~~~w~i~R~~~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~--~ 275 (311)
T PRK05439 209 ---HRLFVSDFFDF-SIYVDA-------DEDLIEKWYIERFLKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDE--I 275 (311)
T ss_pred ---cchhhHHhCCE-EEEEEC-------CHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHh--c
Confidence 12457899998 888888 88999999999999887653 3799999999999987665 4
Q ss_pred hhhhhhhc-CCCCCCCCceEEEEeCCCCCC
Q 044604 447 YLPTLYSE-GPNGSDPEHTLIIEIDDGRNP 475 (476)
Q Consensus 447 Y~~~l~~~-~P~~a~~~~~Lvl~id~~r~v 475 (476)
..+++.+. .|++ .+|++||.++.+|.|
T Consensus 276 ~~pn~~~~I~Ptk--~~ADlIi~~~~~h~i 303 (311)
T PRK05439 276 NLPNLEENILPTR--ERADLILHKGADHSI 303 (311)
T ss_pred chhhHHHhccCCC--cCCCEEEeCCCCCce
Confidence 45555454 7888 789999999999986
No 6
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=100.00 E-value=6e-42 Score=343.70 Aligned_cols=256 Identities=17% Similarity=0.153 Sum_probs=202.1
Q ss_pred HHHHHhcCCC-CCCCccccceeeeeeHHHHHHHHHhhhhc---CCccc-cccCCCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 044604 180 YLCRLFQLNE-LYLTFPQKVGFFTTTYLFSCGVKIKFLSM---CPSLR-MEKIYLPWWYIGFSAPQGCGKTTLAFALDYL 254 (476)
Q Consensus 180 ~l~~l~~lne-~~l~~~~~~r~~ylPL~~~l~~~v~~~~~---~~~~~-~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~l 254 (476)
+|.++.|+|| .++++++ +||+||+++|+.++.+.+. ....| +....+.|+||||+|++||||||||+.|..+
T Consensus 9 ~~~~~~~~~~~~~~~~v~---~iy~pl~~~~~~~~~~~~~~~~~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 9 EIKRLKGINEDLSLEEVA---TIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred HHHHhhCCCCCcCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 7889999997 4788877 9999999999999998321 11122 2333578999999999999999999999999
Q ss_pred HHHc--CCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHHHHhhhhhcCCce-EEeeccccccc
Q 044604 255 FRVT--GRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTK-MKLPRYDKSAY 331 (476)
Q Consensus 255 L~~~--G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~Lk~~~k~G~~-v~iP~YD~s~~ 331 (476)
++++ +.+|.++++|+||++++++.+. ++++.+|+|++||++++.++|..|+ +|+. +.+|+|||.++
T Consensus 86 l~~~~~~g~V~vi~~D~f~~~~~~l~~~-------g~~~~~g~P~s~D~~~l~~~L~~Lk----~g~~~v~~P~Yd~~~~ 154 (290)
T TIGR00554 86 LSRWPEHRKVELITTDGFLHPNQVLKER-------NLMKKKGFPESYDMHRLVKFLSDLK----SGKPNVTAPVYSHLTY 154 (290)
T ss_pred HhhcCCCCceEEEecccccccHHHHHHc-------CCccccCCChhccHHHHHHHHHHHH----CCCCceecCccccccC
Confidence 9865 4579999999999998876541 3567889999999999999999994 7874 99999999987
Q ss_pred cCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhhhhhhhccceEEEEecCCCchhHH
Q 044604 332 NGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYE 411 (476)
Q Consensus 332 ~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~ 411 (476)
+ +.++. +..+ .|.|||||||||+++.|..... | .-+..+++++|+ ++|||+ |.+++++
T Consensus 155 d----~~~~~-~~~v-~~~dIiIvEGi~vL~~~~~~~~----~----~~~~~~~d~~D~-~IyvDa-------~~d~~~~ 212 (290)
T TIGR00554 155 D----VIPDG-FKVV-VQPDILILEGLNVLQSGMDYPH----D----PHHVFVSDFVDF-SIYVDA-------EEDLLQT 212 (290)
T ss_pred C----cCCCC-eEEc-CCCCEEEECCchHhCCchhccc----c----cchHHHHHhCCE-EEEEEC-------CHHHHHH
Confidence 5 55543 3444 6779999999999987652100 0 012357888888 888887 7899999
Q ss_pred HHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHHhHHhhhhhhhhc-CCCCCCCCceEEEEeCCCCCC
Q 044604 412 WRLQAEIAMREAG----------NPGMSDEEVKDFVSRYLPAYHAYLPTLYSE-GPNGSDPEHTLIIEIDDGRNP 475 (476)
Q Consensus 412 WRleRE~~Lr~~~----------~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~-~P~~a~~~~~Lvl~id~~r~v 475 (476)
|+++|++.+|+++ ++||+++|+.+++..+|.. ...+++.++ +|++ .+|++||+++.+|.|
T Consensus 213 w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~--~~~~nl~~~I~Ptr--~rAdlIl~~~~~h~i 283 (290)
T TIGR00554 213 WYINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKE--INWLNLKQNILPTR--ERASLILTKGANHAV 283 (290)
T ss_pred HHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHH--cchhhHHhhCCCCc--ccccEEEecCCCCcE
Confidence 9999999888763 4689998887766666443 445555555 8988 789999999999986
No 7
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=100.00 E-value=8.1e-40 Score=323.85 Aligned_cols=252 Identities=19% Similarity=0.192 Sum_probs=204.4
Q ss_pred CCCccccchhhhcccHHHHHHHHH---------HHHHHhcCCC-CCCCccccceeeeeeHHHHHHHHHhhhh-cCCcc--
Q 044604 156 LIDKMGFSKEKIGDSIDKWIAYNS---------YLCRLFQLNE-LYLTFPQKVGFFTTTYLFSCGVKIKFLS-MCPSL-- 222 (476)
Q Consensus 156 l~~~~~f~~e~~~~~i~~w~~l~~---------~l~~l~~lne-~~l~~~~~~r~~ylPL~~~l~~~v~~~~-~~~~~-- 222 (476)
..+|+.|+|++ |++++. ++..+.|||| .++.+++ .+|+||.++++.++++.. .+...
T Consensus 3 ~~~~~~~~~~~-------w~~~~~~~~~~lt~~e~~~~~~ln~~~~l~eV~---~iylpL~~l~~~~~~~~~~~~~~~~~ 72 (283)
T COG1072 3 YSPYLIFSREQ-------WAALRASTPLTLTEEELKRLRGLNEPISLDEVE---DIYLPLSRLLQLYVEARERLFAELLR 72 (283)
T ss_pred CcccEEechhh-------hhhhhhcCccccCHHHHHHhccCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999 999975 9999999998 4888887 999999999999998842 11111
Q ss_pred c-cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCC--CeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCc
Q 044604 223 R-MEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGR--KSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSH 299 (476)
Q Consensus 223 ~-~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~--~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~ 299 (476)
+ +......|+||||+|++|+||||+|+.|+.++++++. +|.+|.||||+++++.+++ + +|+.+||+|+||
T Consensus 73 ~l~~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~---~----glm~rKGfPeSy 145 (283)
T COG1072 73 FLGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDE---R----GLMARKGFPESY 145 (283)
T ss_pred HhccCCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhh---c----cccccCCCCccc
Confidence 2 3345678999999999999999999999999999854 5999999999999998875 2 589999999999
Q ss_pred cHHHHHHHHHHhhhhhcCCc-eEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhh
Q 044604 300 DLQLSVETLTAISKLTKEGT-KMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLE 378 (476)
Q Consensus 300 D~~lL~e~L~~Lk~~~k~G~-~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~ 378 (476)
|+..|.++|+.+| +|+ .|.+|+|||..|+ ++|+. ...+ ...||||+||+++|+.+.+
T Consensus 146 D~~~ll~fl~~vK----~~~~~v~aPvysh~~yD----~vpd~-~~v~-~~pdIlI~EG~nvLq~~~p------------ 203 (283)
T COG1072 146 DVAALLRFLSDVK----AGKPDVFAPVYSHLIYD----PVPDA-FQVV-PQPDILIVEGNNVLQDGEP------------ 203 (283)
T ss_pred cHHHHHHHHHHHh----cCCCccccccccccccc----cCCCc-eeec-CCCCEEEEechhhhcCCCc------------
Confidence 9999999999995 564 5999999999986 66654 3444 5559999999999987652
Q ss_pred HHhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHh----------CCCCCCHHHHHHHHHHHHHhHHhhh
Q 044604 379 TVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREA----------GNPGMSDEEVKDFVSRYLPAYHAYL 448 (476)
Q Consensus 379 ~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~----------~~~GmS~EeV~~Fv~r~~Paye~Y~ 448 (476)
+..++++||+ ++|||+ +.+.+.+|+++|...++.. ...-|++.++..+....|-. .+.
T Consensus 204 --~~~~sdffDf-SIyvDa-------~~~~le~wyi~Rfl~~g~~a~~~~~~~~~~~~~~~~~~a~~~a~~~w~~--in~ 271 (283)
T COG1072 204 --WLFLSDFFDF-SIYVDA-------DEELLEERYIERFLKFGLTAFEDPASYFHNYAPLSEREAIESARAIWDN--INL 271 (283)
T ss_pred --cccccccceE-EEEecC-------CHHHHHHHHHHHHHhcccchhhChhhHhhccCcchHHHHHHhhhhccee--ehh
Confidence 2358999999 999999 9999999999999876543 24445666666666666654 556
Q ss_pred hhhhhc-CCCC
Q 044604 449 PTLYSE-GPNG 458 (476)
Q Consensus 449 ~~l~~~-~P~~ 458 (476)
.++.++ .||+
T Consensus 272 ~nl~~~i~ptr 282 (283)
T COG1072 272 LNLRENILPTR 282 (283)
T ss_pred hhhhhccCcCC
Confidence 666665 5654
No 8
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.98 E-value=1.7e-31 Score=257.67 Aligned_cols=200 Identities=20% Similarity=0.288 Sum_probs=157.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH--cCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRV--TGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTA 310 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~--~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~ 310 (476)
||||+|++||||||||+.|..+|+. .+.++.+|++||||+++.++.+. ++++.+|+|+++|++++.+.|..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~-------~~~~~~g~p~~~d~~~l~~~L~~ 73 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIER-------GLMDRKGFPESYDMEALLKFLKD 73 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHh-------hhhhcCCCcccCCHHHHHHHHHH
Confidence 6999999999999999999999975 46689999999999998866542 34567799999999999999999
Q ss_pred hhhhhcC-CceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhhh
Q 044604 311 ISKLTKE-GTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFD 389 (476)
Q Consensus 311 Lk~~~k~-G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~D 389 (476)
|+ . ++.+.+|.|||..++ +.++. ...+ .+.+|||||||++++.+... +..+++++|
T Consensus 74 l~----~g~~~v~~P~yd~~~~~----~~~~~-~~~~-~~~~vvIvEG~~~l~~~~~~-------------~~~l~~~~D 130 (220)
T cd02025 74 IK----SGKKNVKIPVYSHLTYD----VIPGE-KQTV-DQPDILIIEGLNVLQTGQNP-------------RLFVSDFFD 130 (220)
T ss_pred HH----CCCCcEEccccceeccc----cCCCC-ceec-CCCCEEEECCchhcCCcccc-------------hhhHHHhCC
Confidence 95 5 578999999999864 55543 2224 67799999999999864321 334888888
Q ss_pred hhhhccceEEEEecCCCchhHHHHHHHHHHHHHh----------CCCCCCHHHHHHHHHHHHHhHHhhhhhhhhc--CCC
Q 044604 390 AWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREA----------GNPGMSDEEVKDFVSRYLPAYHAYLPTLYSE--GPN 457 (476)
Q Consensus 390 lw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~----------~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~--~P~ 457 (476)
+ ++|||+ +.+.+++|+++|...+++. .++||+.+++.+|+... |+....+.... .|+
T Consensus 131 ~-~ifvd~-------~~~~~~~rl~~R~~r~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~i~p~ 199 (220)
T cd02025 131 F-SIYVDA-------DEDDIEKWYIKRFLKLRETAFSDPDSYFHRYAKMSEEEAIAFAREV---WKNINLKNLRENILPT 199 (220)
T ss_pred e-EEEEEC-------CHHHHHHHHHHHHHHHHHHHHhCchhhhhcccCCCHHHHHHHHHHH---HHHcCHHHHhhhccCC
Confidence 8 788887 7799999999998765322 14799999999999885 23344444422 576
Q ss_pred CCCCCceEEEEeCCCCCC
Q 044604 458 GSDPEHTLIIEIDDGRNP 475 (476)
Q Consensus 458 ~a~~~~~Lvl~id~~r~v 475 (476)
+ ..|++||..+.+|++
T Consensus 200 ~--~~AD~ii~~~~~~~~ 215 (220)
T cd02025 200 R--NRADLILEKGADHSI 215 (220)
T ss_pred c--cceEEEEEeCCCCcE
Confidence 6 578899999999986
No 9
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.97 E-value=6.5e-32 Score=260.94 Aligned_cols=187 Identities=26% Similarity=0.382 Sum_probs=154.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL 308 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L 308 (476)
.+++||||+|+|||||||+|+.|...|+. ..+++|++||||+..+++... +++.. .+++|+++|+++|.+.|
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~--~~~~~I~~D~YYk~~~~~~~~-~~~~~-----n~d~p~A~D~dLl~~~L 77 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV--EKVVVISLDDYYKDQSHLPFE-ERNKI-----NYDHPEAFDLDLLIEHL 77 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCc--CcceEeeccccccchhhcCHh-hcCCc-----CccChhhhcHHHHHHHH
Confidence 45799999999999999999999999964 388999999999987765542 22222 24899999999999999
Q ss_pred HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604 309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF 388 (476)
Q Consensus 309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~ 388 (476)
..| ++|+.|.+|.||+.++. |.++. ....|.+||||||++++. ++.|++++
T Consensus 78 ~~L----~~g~~v~~P~yd~~~~~----r~~~~---i~~~p~~VVIvEGi~~l~------------------d~~lr~~~ 128 (218)
T COG0572 78 KDL----KQGKPVDLPVYDYKTHT----REPET---IKVEPNDVVIVEGILLLY------------------DERLRDLM 128 (218)
T ss_pred HHH----HcCCcccccccchhccc----ccCCc---cccCCCcEEEEecccccc------------------cHHHHhhc
Confidence 999 58999999999999865 54332 233788999999999996 56899999
Q ss_pred hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEE
Q 044604 389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLII 467 (476)
Q Consensus 389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl 467 (476)
|+ ++|||+ |.+.+..||++|+.. ++|.+.+.| .+|...++|+|+.|+++... -|++++
T Consensus 129 d~-kIfvdt-------d~D~RliRri~RD~~-----~rg~~~e~vi~qy~~~vkp~~~~fIeptk~--------~ADiii 187 (218)
T COG0572 129 DL-KIFVDT-------DADVRLIRRIKRDVQ-----ERGRDLESVIEQYVKTVRPMYEQFIEPTKK--------YADIII 187 (218)
T ss_pred CE-EEEEeC-------CccHHHHHHHHHHHH-----HhCCCHHHHHHHHHHhhChhhhhccCcccc--------cceEEe
Confidence 99 999998 899999999999873 689999999 99999999999999985543 455666
Q ss_pred EeCCCC
Q 044604 468 EIDDGR 473 (476)
Q Consensus 468 ~id~~r 473 (476)
--...+
T Consensus 188 p~~~~n 193 (218)
T COG0572 188 PSGGKN 193 (218)
T ss_pred ecCCcc
Confidence 555433
No 10
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.97 E-value=1.7e-30 Score=243.76 Aligned_cols=187 Identities=29% Similarity=0.446 Sum_probs=147.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCC----eEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRK----SATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL 308 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~----v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L 308 (476)
||||+|+|||||||||+.|...|++.|.. +.++++|+||.+.....+.... +..+. ++.|+++|++++.+.|
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~-~~~p~a~d~~~l~~~l 76 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRG---ENRYN-FDHPDAFDFDLLKEDL 76 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHC---TTTSS-TTSGGGBSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhcc---ccccC-CCCccccCHHHHHHHH
Confidence 79999999999999999999999987766 7889999999876654443221 11223 3789999999999999
Q ss_pred HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604 309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF 388 (476)
Q Consensus 309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~ 388 (476)
..|+ +|+.+.+|.|||.+++ +.+ |..+..|.+||||||+|+++. +.+++++
T Consensus 77 ~~L~----~g~~i~~p~yd~~~~~----~~~---~~~~~~~~~ivIvEG~~~l~~------------------~~l~~l~ 127 (194)
T PF00485_consen 77 KALK----NGGSIEIPIYDFSTGD----RDP---WIIIISPSDIVIVEGIYALYD------------------EELRDLF 127 (194)
T ss_dssp HHHH----TTSCEEEEEEETTTTE----EEE---EEEEEES-SEEEEEETTTTSS------------------HCHGGG-
T ss_pred HHHh----CCCccccccccccccc----cee---eeeecCCCCEEEEcccceeee------------------eeecccc
Confidence 9994 7889999999998854 332 456667889999999999963 3488999
Q ss_pred hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEEE
Q 044604 389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIE 468 (476)
Q Consensus 389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl~ 468 (476)
|+ ++|||+ +.+..+.||++|+.. .+|.+.|++.+...+++|.|+.|+.+.... |++||.
T Consensus 128 D~-~ifld~-------~~~~~l~Rri~RD~~-----~rG~~~~~~~~~~~~~~~~~~~~I~p~~~~--------ADivi~ 186 (194)
T PF00485_consen 128 DL-KIFLDA-------DEDLRLERRIQRDVA-----ERGRSPEEVIAQYERVRPGYERYIEPQKER--------ADIVIP 186 (194)
T ss_dssp SE-EEEEEE--------HHHHHHHHHHHHHH-----HS-S-HHHHHHHHHTHHHHHHHCTGGGGGG---------SEEEE
T ss_pred ee-EEEecc-------cHHHHHHHHhhhhcc-----ccCCcceeEEEEeecCChhhhhheeccccc--------cEEEEC
Confidence 98 888887 889999999999974 579999999777779999999999887643 458888
Q ss_pred eCCCC
Q 044604 469 IDDGR 473 (476)
Q Consensus 469 id~~r 473 (476)
.....
T Consensus 187 ~~~~~ 191 (194)
T PF00485_consen 187 SGPTN 191 (194)
T ss_dssp SCTSS
T ss_pred CCCCc
Confidence 76654
No 11
>PTZ00301 uridine kinase; Provisional
Probab=99.96 E-value=7.1e-30 Score=245.62 Aligned_cols=186 Identities=22% Similarity=0.286 Sum_probs=146.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCC-eEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRV-TGRK-SATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL 308 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~-~G~~-v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L 308 (476)
.++|||+|+|||||||||+.|...|.. .|.. +.++++|+||++..+...... +. ..+|.|+|+|+++|.+.|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~-----~~-~~~d~p~a~D~~~l~~~l 76 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESER-----AY-TNYDHPKSLEHDLLTTHL 76 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHh-----cC-CCCCChhhhCHHHHHHHH
Confidence 489999999999999999999877743 4554 568999999998754433211 12 345999999999999999
Q ss_pred HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604 309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF 388 (476)
Q Consensus 309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~ 388 (476)
..| ++|+.+.+|.||+..++ +.... ..+ .|.+||||||+++++ +++|++++
T Consensus 77 ~~L----~~g~~i~~P~yd~~~~~----~~~~~--~~i-~p~~ViIvEGi~~l~------------------~~~l~~l~ 127 (210)
T PTZ00301 77 REL----KSGKTVQIPQYDYVHHT----RSDTA--VTM-TPKSVLIVEGILLFT------------------NAELRNEM 127 (210)
T ss_pred HHH----HcCCcccCCCcccccCC----cCCce--EEe-CCCcEEEEechhhhC------------------CHHHHHhC
Confidence 999 47889999999998864 33321 344 567999999999985 35689999
Q ss_pred hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEE
Q 044604 389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVK-DFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLII 467 (476)
Q Consensus 389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~-~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl 467 (476)
|+ ++|||+ +.++.+.||++|+.+ .+|.+.+++. .|.+++.|.+..|+++... .|++||
T Consensus 128 D~-~ifvd~-------~~d~~~~Rr~~Rd~~-----~rG~~~e~v~~~~~~~v~~~~~~~I~p~k~--------~ADiIi 186 (210)
T PTZ00301 128 DC-LIFVDT-------PLDICLIRRAKRDMR-----ERGRTFESVIEQYEATVRPMYYAYVEPSKV--------YADIIV 186 (210)
T ss_pred CE-EEEEeC-------ChhHHHHHHHhhhHH-----hcCCCHHHHHHHHHHhhcccHHHHcCcccc--------CCcEEE
Confidence 99 888887 889999999999873 4799999995 5888899999999887653 455887
Q ss_pred EeCCC
Q 044604 468 EIDDG 472 (476)
Q Consensus 468 ~id~~ 472 (476)
.-+.+
T Consensus 187 ~~~~~ 191 (210)
T PTZ00301 187 PSWKD 191 (210)
T ss_pred cCCCc
Confidence 64443
No 12
>PLN02348 phosphoribulokinase
Probab=99.95 E-value=1.5e-27 Score=247.58 Aligned_cols=185 Identities=21% Similarity=0.327 Sum_probs=145.6
Q ss_pred eHHHHHHHHHhhhhcCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcC---------------CCeEEEecc
Q 044604 204 TYLFSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTG---------------RKSATISID 268 (476)
Q Consensus 204 PL~~~l~~~v~~~~~~~~~~~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G---------------~~v~vISlD 268 (476)
|+..|+...... ..+|+||||+|+|||||||||+.|..+|+..+ ..+.+|++|
T Consensus 34 ~~~~~~~~~~~~------------~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lD 101 (395)
T PLN02348 34 PAASSVVVALAA------------DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLD 101 (395)
T ss_pred chhHHHHHhhcc------------CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcc
Confidence 888777665222 35789999999999999999999999997532 368899999
Q ss_pred ccccCH-HHHHHHHHcccCCccccccCCCCCccHHHHHHHHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceec
Q 044604 269 DFYLTA-EGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIE 347 (476)
Q Consensus 269 DFYl~~-~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~ 347 (476)
|||+.. ..+.. ...+ . ..|+++|+++|.+.|.+| ++|+.+.+|+|||.+. +..+ +..|
T Consensus 102 DYh~~dr~~r~~----~g~t----~-ldP~a~dfDll~~~L~~L----k~G~~I~~PiYDh~tg----~~~~---~e~I- 160 (395)
T PLN02348 102 DYHSLDRTGRKE----KGVT----A-LDPRANNFDLMYEQVKAL----KEGKAVEKPIYNHVTG----LLDP---PELI- 160 (395)
T ss_pred cccCCChhhHhh----cCCc----c-CCcccccHHHHHHHHHHH----HCCCcEEeeccccCCC----CcCC---cEEc-
Confidence 999753 33222 1111 1 358999999999999999 4899999999999873 2333 2345
Q ss_pred CCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCC
Q 044604 348 GPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPG 427 (476)
Q Consensus 348 ~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~G 427 (476)
.|.+||||||+++++. +.+++++|+ ++|||+ +.+..+.||++|+.+ .+|
T Consensus 161 ~p~~VVIVEGlh~L~~------------------e~lr~l~D~-~IyVd~-------~~dvrl~RRI~RD~~-----eRG 209 (395)
T PLN02348 161 EPPKILVIEGLHPMYD------------------ERVRDLLDF-SIYLDI-------SDDVKFAWKIQRDMA-----ERG 209 (395)
T ss_pred CCCcEEEEechhhccC------------------ccccccCcE-EEEEEC-------CHHHHHHHHHHhhHh-----hcC
Confidence 6789999999999863 347788888 777776 789999999999863 479
Q ss_pred CCHHHHHHHHHHHHHhHHhhhhhhh
Q 044604 428 MSDEEVKDFVSRYLPAYHAYLPTLY 452 (476)
Q Consensus 428 mS~EeV~~Fv~r~~Paye~Y~~~l~ 452 (476)
++.|+|.+.++..+|.|+.|+.+..
T Consensus 210 ~S~EeV~~~i~ar~pd~~~yI~pqk 234 (395)
T PLN02348 210 HSLESIKASIEARKPDFDAYIDPQK 234 (395)
T ss_pred CCHHHHHHHHHhcCcchhhhccccc
Confidence 9999998888889999999997655
No 13
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.95 E-value=2e-27 Score=236.40 Aligned_cols=181 Identities=20% Similarity=0.264 Sum_probs=143.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc-CHHHHHHH---HHcccCCccccccCC--CCCccHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL-TAEGQAKL---REANRGNALLEFRGN--AGSHDLQLSVE 306 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl-~~~er~~l---a~~~p~npLl~~rG~--P~t~D~~lL~e 306 (476)
||||+|+|||||||+++.|...|+..|.++++|++|+||+ ++.++++. ++....| | ++ |+++|+++|.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~n--f---dHf~PeAnd~dlL~~ 75 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRN--F---SHFGPEANLFDLLEE 75 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCC--C---CCCCcccccHHHHHH
Confidence 6999999999999999999999988888999999999998 44343321 1111122 2 55 99999999999
Q ss_pred HHHHhhhhhcCCceEEeeccccc-----cccC-CCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHH
Q 044604 307 TLTAISKLTKEGTKMKLPRYDKS-----AYNG-RGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETV 380 (476)
Q Consensus 307 ~L~~Lk~~~k~G~~v~iP~YD~s-----~~~G-~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~v 380 (476)
.|++| ++|+.++.|+|||. .|+. .|.+. .|..+..|.||||+||++.++.- .
T Consensus 76 ~l~~L----~~g~~i~~p~Y~h~~~~~~~~~~~~gtft---~~~~~~~p~dvIivEGLhg~~~~---------------~ 133 (277)
T cd02029 76 LFRTY----GETGRGRSRYYLHSDEEAAPFNQEPGTFT---PWEDLPEDTDLLFYEGLHGGVVT---------------E 133 (277)
T ss_pred HHHHH----HcCCCcccceeeccccccccccCCCCccC---CcccccCCCcEEEECCCCccccc---------------c
Confidence 99999 58999999999984 2321 12232 36665588999999999976421 2
Q ss_pred hHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhh
Q 044604 381 NKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYS 453 (476)
Q Consensus 381 n~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~ 453 (476)
+++|++++|+ ++|||. +.+..+.||++|+.+ .||+|.|+|.+-+.+.+|.|..|+.+.+.
T Consensus 134 ~~~lr~~~Dl-kIfVd~-------~~dlr~irRI~RD~~-----ERGrs~EsVi~qilrrmpdy~~yI~PQ~~ 193 (277)
T cd02029 134 GYNVAQHADL-LVGVVP-------IINLEWIQKIHRDTA-----ERGYSAEAVMDTILRRMPDYINYICPQFS 193 (277)
T ss_pred cHHHHHhCCe-EEEecC-------cHHHHHHHHHHhhhH-----hhCCCHHHHHHHHHHhCchHHhhCCcccc
Confidence 4679999999 999987 788999999999973 68999999977777777999999988873
No 14
>PRK15453 phosphoribulokinase; Provisional
Probab=99.94 E-value=7.4e-27 Score=233.80 Aligned_cols=188 Identities=19% Similarity=0.237 Sum_probs=145.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc-CHHHHHHH---HHcccCCccccccCCCCCccHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL-TAEGQAKL---REANRGNALLEFRGNAGSHDLQLS 304 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl-~~~er~~l---a~~~p~npLl~~rG~P~t~D~~lL 304 (476)
+++.+|||+|+|||||||+|+.|..+|+..+.++++|++|+||. ++.++... +++...| |+..| |+++|+++|
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~n--fdhf~-PdAnd~dlL 79 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRH--FSHFG-PEANLFDEL 79 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCC--CCCCC-CCcccHHHH
Confidence 46789999999999999999999999987788899999999996 66665331 1121112 32222 999999999
Q ss_pred HHHHHHhhhhhcCCceEEeeccccc-----cccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhH
Q 044604 305 VETLTAISKLTKEGTKMKLPRYDKS-----AYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLET 379 (476)
Q Consensus 305 ~e~L~~Lk~~~k~G~~v~iP~YD~s-----~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~ 379 (476)
.+.|++|+ +|+.++.|.|+|+ .|+..... -..|..+..|.||||+||++.++..
T Consensus 80 ~~~l~~l~----~~~~g~~~~Y~h~f~~a~~~~~~~gt--ft~~e~i~~p~dvIivEGLh~~~~~--------------- 138 (290)
T PRK15453 80 EQLFREYG----ETGTGKTRKYLHTDDEAVPYNQVPGT--FTPWEPLPEGTDLLFYEGLHGGVVT--------------- 138 (290)
T ss_pred HHHHHHHh----cCCCcceeeccccccccccCCCCCCc--cCCceEecCCCcEEEEecccccccc---------------
Confidence 99999994 7778888999753 24322111 1237788778999999999998531
Q ss_pred HhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhh
Q 044604 380 VNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYS 453 (476)
Q Consensus 380 vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~ 453 (476)
...+|++++|+ ++|||. +.+..+.||++|+.+ +||+|.|+|.+-+.+.+|.|..|+.+.+.
T Consensus 139 ~~~~lr~~~Dl-kIfVdp-------~~dlr~irRI~RD~~-----ERGrs~EsVi~qilrrmPdy~~yI~PQ~~ 199 (290)
T PRK15453 139 DQVDVAQHVDL-LIGVVP-------IVNLEWIQKIHRDTS-----ERGYSREAVMDTILRRMPDYINYITPQFS 199 (290)
T ss_pred ccHHHHHhCCe-eEeeCC-------cHhHHHHHHHHhhhH-----hhCCCHHHHHHHHHHhCChHhhhCCCCcc
Confidence 13568999999 888887 778888999999973 68999999977777778999999988773
No 15
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.93 E-value=7.1e-26 Score=211.71 Aligned_cols=166 Identities=24% Similarity=0.281 Sum_probs=129.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHHHHhh
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAIS 312 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~Lk 312 (476)
||||+|++||||||||+.|+..|...|.++.+|++||||++.. ... .. ....+.|..+|++++.+.|..|
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~--~~~--~~-----~g~~d~~~~~d~~~l~~~l~~l- 70 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRK--TPR--DE-----DGNYDFESILDLDLLNKNLHDL- 70 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcc--ccc--cc-----CCCCCCCccccHHHHHHHHHHH-
Confidence 6999999999999999999999988889999999999999871 111 11 1123677789999999999999
Q ss_pred hhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhhhhhh
Q 044604 313 KLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWD 392 (476)
Q Consensus 313 ~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~Dlw~ 392 (476)
++|+.+.+|.||+.++. +.... .....|.+||||||+++++ ++|++++|+ +
T Consensus 71 ---~~~~~~~~p~yd~~~~~----~~~~~--~~~~~~~~vIIvEG~~~l~-------------------~~l~~~~d~-~ 121 (179)
T cd02028 71 ---LNGKEVELPIYDFRTGK----RRGYR--KLKLPPSGVVILEGIYALN-------------------ERLRSLLDI-R 121 (179)
T ss_pred ---HCCCeeecccceeECCc----cCCCc--eEEeCCCCEEEEecHHhcC-------------------HhHHhhcCE-E
Confidence 47889999999998854 33211 2233678999999999984 458888888 7
Q ss_pred hccceEEEEecCCCch-hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhh
Q 044604 393 KFIKAWIVIKIKDPSC-VYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPT 450 (476)
Q Consensus 393 ifVDa~I~L~~~d~d~-v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~ 450 (476)
+|||+ +.+. .+.||+.|+. ..+|.+.+++... ..+.|+++.++.+
T Consensus 122 I~vd~-------~~~~~rl~rri~RD~-----~~rg~~~~~~i~~-~~~~~~~~~~~~~ 167 (179)
T cd02028 122 VAVSG-------GVHLNRLLRRVVRDI-----QFRGYSAELTILM-WPSVPSGEEFIIP 167 (179)
T ss_pred EEEeC-------CccHHHHHHHHHHhH-----HhhCCCHHHHhhh-cccccCchhhcCC
Confidence 77776 6776 8999999987 3679999999665 3467777766644
No 16
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.91 E-value=1.2e-23 Score=198.97 Aligned_cols=185 Identities=23% Similarity=0.298 Sum_probs=139.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL 308 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L 308 (476)
.+|++|||+|++|||||||++.|...|. +..+.+|++|+||.+..+.... ... .+ .++.|+++|++.+.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~~~~~~~~~~~~-~~~----~~-~~~~~~~~~~~~l~~~l 75 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDSYYKDQSHLSFE-ERV----KT-NYDHPDAFDHDLLIEHL 75 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCccccCcccCCHH-Hhc----cc-CccCcccccHHHHHHHH
Confidence 5789999999999999999999999883 4578999999999876432111 110 01 23789999999999999
Q ss_pred HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604 309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF 388 (476)
Q Consensus 309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~ 388 (476)
..| +.|+.+.+|.||+.++. +.+.. ..+ .+.++||+||++++.. +.+.+++
T Consensus 76 ~~l----~~~~~v~~p~~d~~~~~----~~~~~--~~~-~~~~~vivEg~~l~~~------------------~~~~~~~ 126 (209)
T PRK05480 76 KAL----KAGKAIEIPVYDYTEHT----RSKET--IRV-EPKDVIILEGILLLED------------------ERLRDLM 126 (209)
T ss_pred HHH----HcCCccccCcccccccc----cCCCe--EEe-CCCCEEEEEeehhcCc------------------hhHhhhh
Confidence 999 47889999999998854 33221 233 5669999999999852 3466777
Q ss_pred hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEE
Q 044604 389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLII 467 (476)
Q Consensus 389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl 467 (476)
|+ .+|||+ +.+...+|+++|+. ..+|.+.+++ ..|.....|.|+.|+++... .|++||
T Consensus 127 d~-~I~v~~-------~~~~~~~R~~~Rd~-----~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~--------~AD~vI 185 (209)
T PRK05480 127 DI-KIFVDT-------PLDIRLIRRLKRDV-----NERGRSLESVINQYLSTVRPMHLQFIEPSKR--------YADIII 185 (209)
T ss_pred ce-eEEEeC-------ChhHHHHHHHhhcc-----hhcCCCHHHHHHHHHHhhhhhHHhhccHhhc--------ceeEEe
Confidence 76 666665 67888888998875 3578999888 66777788999988776542 356888
Q ss_pred EeCC
Q 044604 468 EIDD 471 (476)
Q Consensus 468 ~id~ 471 (476)
..+.
T Consensus 186 ~~~~ 189 (209)
T PRK05480 186 PEGG 189 (209)
T ss_pred cCCC
Confidence 7653
No 17
>PRK06696 uridine kinase; Validated
Probab=99.90 E-value=2.5e-23 Score=199.75 Aligned_cols=195 Identities=20% Similarity=0.203 Sum_probs=141.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCC-CCCccHHHHHH
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGN-AGSHDLQLSVE 306 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~-P~t~D~~lL~e 306 (476)
...|++|||+|++||||||||+.|+..|...|..++++++||||++..++.+.... ...|+ ++++|+++|.+
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~-------~~~g~~~~~~d~~~L~~ 91 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRE-------SAEGYYEDAYDYTALRR 91 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCC-------ChhhcCccccCHHHHHH
Confidence 35799999999999999999999999998888889999999999998877653211 12232 48999999998
Q ss_pred HHHHhhhhhcCC-ceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHh
Q 044604 307 TLTAISKLTKEG-TKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLE 385 (476)
Q Consensus 307 ~L~~Lk~~~k~G-~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~ 385 (476)
.|..+.. ..| ..+..|.||+.... +... .+..+ ++.+|||+||.+++. ..+.
T Consensus 92 ~l~~~l~--~~~~~~~~~~~~d~~~~~----~~~~-~~~~~-~~~~vviveg~~l~~-------------------~~~~ 144 (223)
T PRK06696 92 LLLDPLG--PNGDRQYRTASHDLKTDI----PVHN-PPLLA-APNAVLIVDGTFLLR-------------------PELR 144 (223)
T ss_pred HHHhhcc--CCCceeEeeeeeccccCc----ccCC-Cceec-CCCCEEEEecHHHhh-------------------hhHH
Confidence 8765321 123 36888899997632 2211 12233 566899999999863 3466
Q ss_pred hhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhhcCCCCCCCCceE
Q 044604 386 AYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTL 465 (476)
Q Consensus 386 dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~L 465 (476)
+++|+ .+||++ +.+...+|+.+|+.. .+|..++....|.++|+|+++.|+.... | + ..|++
T Consensus 145 ~~~d~-~i~v~~-------~~e~~~~R~~~Rd~~-----~~g~~~~~~~~~~~r~~~~~~~y~~~~~---p-~--~~ADi 205 (223)
T PRK06696 145 DLWDY-KIFLDT-------DFEVSRRRGAKRDTE-----AFGSYEEAEKMYLARYHPAQKLYIAEAN---P-K--ERADV 205 (223)
T ss_pred hhCCE-EEEEEC-------CHHHHHHHHHHhhhh-----hhCCchHHHHHHHHHHhHHHHHHHhhcC---h-H--hhCeE
Confidence 77776 566665 678888888888753 3454556669999999999998886553 4 2 45779
Q ss_pred EEEeCCCCCC
Q 044604 466 IIEIDDGRNP 475 (476)
Q Consensus 466 vl~id~~r~v 475 (476)
||.-+..++|
T Consensus 206 vi~n~~~~~p 215 (223)
T PRK06696 206 VIDNSDPANP 215 (223)
T ss_pred EEECCCCCCC
Confidence 9877775554
No 18
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.90 E-value=1.7e-23 Score=226.12 Aligned_cols=166 Identities=19% Similarity=0.282 Sum_probs=133.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL 308 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L 308 (476)
.+++||||+|++||||||||+.|...+ ..+.+|++|||+..... . . .| .+.|+++|++.+.+.|
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL----p~vgvIsmDdy~~~~~~---i--~--~n-----fD~P~a~D~d~L~enL 126 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVISMDNYNDSSRI---I--D--GN-----FDDPRLTDYDTLLDNI 126 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC----CCcEEEEEcceecchhh---h--C--cc-----CCChhhcchhHHHHHH
Confidence 468999999999999999999999886 25789999999854321 1 1 11 2679999999999999
Q ss_pred HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604 309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF 388 (476)
Q Consensus 309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~ 388 (476)
..| ++|+.+.+|.||+.+++ +.... .....|.+||||||+|++. +.|++++
T Consensus 127 ~~L----r~GksV~iPiYDf~t~~----r~~~~--~i~v~p~~VVIVEGIyaL~-------------------~~Lr~Ll 177 (656)
T PLN02318 127 HDL----KAGKSVQVPIYDFKSSS----RVGYR--TLEVPSSRIVIIEGIYALS-------------------EKLRPLL 177 (656)
T ss_pred HHH----hCCCceecCccccccCc----ccCCc--eeecCCCcEEEEechhhcc-------------------HhHHhhC
Confidence 999 58999999999998754 43221 1223678999999999984 4689999
Q ss_pred hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhh
Q 044604 389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLY 452 (476)
Q Consensus 389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~ 452 (476)
|+ ++|||+ +.+..+.||+.|+.. .+|.+.+++ .+|...++|+|+.|+++..
T Consensus 178 Dl-kIFVDt-------dvDirL~RRI~RD~~-----eRGrs~EsVi~q~~~~VkP~y~~FIeP~k 229 (656)
T PLN02318 178 DL-RVSVTG-------GVHFDLVKRVLRDIQ-----RAGQEPEEIIHQISETVYPMYKAFIEPDL 229 (656)
T ss_pred CE-EEEEcC-------CccHHHHHHHHHHHH-----HhCCCHHHHHHHHHHhhcchHHHHhCcch
Confidence 98 888886 677888899999873 468899988 7888999999999998754
No 19
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.90 E-value=2.6e-24 Score=204.08 Aligned_cols=177 Identities=18% Similarity=0.180 Sum_probs=131.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHHHHhh
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAIS 312 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~Lk 312 (476)
||||+|++||||||+|+.|+..+. .+.+|++||||++..++.... . + +..+|.|+++|+++|.+.|..|+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf~~~~~~~~~~~-~----~-~~~~d~p~a~D~~~l~~~L~~l~ 70 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQDDFFKPEDEIPVDE-N----G-FKQWDVLEALDMEAMMSTLDYWR 70 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC----CCeEEccccccCCcccCChHh-h----c-CCCCCCcccccHHHHHHHHHHHH
Confidence 699999999999999999999873 478999999999887554321 1 1 33569999999999999999995
Q ss_pred hhhcCCceEEeeccccccccCCCCC---------CCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHH
Q 044604 313 KLTKEGTKMKLPRYDKSAYNGRGDR---------ADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKN 383 (476)
Q Consensus 313 ~~~k~G~~v~iP~YD~s~~~G~gDr---------~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~ 383 (476)
+|+.+..|.+++...+..... ... . ..+..+.+||||||.+++.. +.
T Consensus 71 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~iViVEG~~l~~~------------------~~ 126 (187)
T cd02024 71 ----ETGHFPKFLRSHGNENDPEKEFIEDAQIEETKA-D-LLGAEDLHILIVDGFLLYNY------------------KP 126 (187)
T ss_pred ----cCCCccCcccCccccccccccccchhhhhhccc-c-ccccCCCcEEEEechHhcCC------------------HH
Confidence 666666666665443210000 000 0 12336779999999998753 45
Q ss_pred HhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhhc
Q 044604 384 LEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSE 454 (476)
Q Consensus 384 L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~ 454 (476)
+++++|+ ++|||+ +.+.+.+||++|+... -..|...+-...|.+.+||+|..++..++++
T Consensus 127 l~~l~D~-~Ifvd~-------~~d~~~~Rr~~R~~~~---~~~~~w~Dp~~yf~~~v~p~y~~~~~~~~~~ 186 (187)
T cd02024 127 LVDLFDI-RYFLRV-------PYETCKRRREARTGYV---TLEGFWPDPPGYFDGHVWPMYLKHHAEMFEN 186 (187)
T ss_pred HHhhcCc-eeEecC-------CHHHHHHHHHHcCCcc---ccCcccCCCCcccccccchhHHHHHHHHhhc
Confidence 8889898 888887 8899999999886421 1234445566889999999999999999875
No 20
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.89 E-value=2.6e-22 Score=190.32 Aligned_cols=188 Identities=23% Similarity=0.290 Sum_probs=139.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL 308 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L 308 (476)
++..+|||+|++|||||||++.|..++.. ..+.++++|+||.+..++.... .. + + ..+.|+++|.+++.+.|
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~~~~~~~~~~~~-~~--~--~-~~~~~~~~~~~~l~~~l 75 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNYYKDQSHLEMAE-RK--K--T-NFDHPDAFDNDLLYEHL 75 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEecccccccChhhCCHHH-hc--C--C-CCCCccHhHHHHHHHHH
Confidence 56789999999999999999999998863 4678999999998765443221 11 1 1 23679999999999999
Q ss_pred HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604 309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF 388 (476)
Q Consensus 309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~ 388 (476)
..| +.|+.+.+|.||+.+++ +..+ ...+ .+.+++|+||+++++. +.+.+++
T Consensus 76 ~~l----~~g~~v~~p~yd~~~~~----~~~~--~~~~-~~~~~vIieG~~~~~~------------------~~~~~~~ 126 (207)
T TIGR00235 76 KNL----KNGSPIDVPVYDYVNHT----RPKE--TVHI-EPKDVVILEGIMPLFD------------------ERLRDLM 126 (207)
T ss_pred HHH----HCCCCEecccceeecCC----CCCc--eEEe-CCCCEEEEEehhhhch------------------HhHHHhC
Confidence 999 47889999999998754 3222 2334 5679999999999852 3456666
Q ss_pred hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEE
Q 044604 389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLII 467 (476)
Q Consensus 389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl 467 (476)
|+ .+|||+ +.+..+.|+++|+.. .+|.+.+++ ..|....+|.|..|+.+.. ..|++||
T Consensus 127 d~-~I~v~~-------~~~~~l~R~~~R~~~-----~rg~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~Ad~vi 185 (207)
T TIGR00235 127 DL-KIFVDT-------PLDIRLIRRIERDIN-----ERGRSLDSVIDQYRKTVRPMYEQFVEPTK--------QYADLII 185 (207)
T ss_pred CE-EEEEEC-------ChhHHHHHHHHHHHH-----hhCCCHHHHHHHHHHhhhhhHHHhCcccc--------cccEEEE
Confidence 65 455555 678888889988753 357787776 6677777888887765443 3566999
Q ss_pred EeCCCCC
Q 044604 468 EIDDGRN 474 (476)
Q Consensus 468 ~id~~r~ 474 (476)
..+.+|.
T Consensus 186 ~~~~~~~ 192 (207)
T TIGR00235 186 PEGGRNE 192 (207)
T ss_pred cCCCCch
Confidence 8777764
No 21
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.88 E-value=5.6e-22 Score=185.74 Aligned_cols=183 Identities=21% Similarity=0.329 Sum_probs=135.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHHHHhh
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAIS 312 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~Lk 312 (476)
||||+|++|||||||++.|..+| .+.++.++++|+||.+.......... ...+++|+++|++++.+.|..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~l- 71 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDLSHEELEERK------NNNYDHPDAFDFDLLISHLQDL- 71 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccccccccccHHHhc------cCCCCCCCcccHHHHHHHHHHH-
Confidence 69999999999999999999998 35689999999999765433322111 1234789999999999999999
Q ss_pred hhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhhhhhh
Q 044604 313 KLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWD 392 (476)
Q Consensus 313 ~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~Dlw~ 392 (476)
+.|+.+.+|.||++++. +.... ..+ .+.+++|+||++++.. +.+.+++|+ .
T Consensus 72 ---~~~~~~~~p~~d~~~~~----~~~~~--~~i-~~~~~vI~eg~~~~~~------------------~~~~~~~d~-~ 122 (198)
T cd02023 72 ---KNGKSVEIPVYDFKTHS----RLKET--VTV-YPADVIILEGILALYD------------------KELRDLMDL-K 122 (198)
T ss_pred ---HCCCCEeccccccccCc----ccCCc--eec-CCCCEEEEechhhccc------------------hhHHhhcCe-E
Confidence 47888999999998854 33322 233 5669999999999853 235566666 5
Q ss_pred hccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEEEeCC
Q 044604 393 KFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIEIDD 471 (476)
Q Consensus 393 ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl~id~ 471 (476)
+|||+ +.+..++||++|+.. .+|++.+++ ..|..+..|.|..|+.+.. ..+++||..+.
T Consensus 123 i~v~~-------~~~~~~~R~~~Rd~~-----~rg~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~aD~ii~~~~ 182 (198)
T cd02023 123 IFVDT-------DADVRLIRRIERDIV-----ERGRDLESVINQYLKFVKPMHEQFIEPTK--------RYADVIIPRGG 182 (198)
T ss_pred EEEEC-------ChhHHHHHHHHHHhh-----hcCCCHHHHHHHHHHhhhhhHHHhCccch--------hceeEEECCCC
Confidence 55555 677888999998752 478888877 7777888899888876532 34568887655
Q ss_pred CC
Q 044604 472 GR 473 (476)
Q Consensus 472 ~r 473 (476)
+.
T Consensus 183 ~~ 184 (198)
T cd02023 183 DN 184 (198)
T ss_pred Cc
Confidence 43
No 22
>PRK07429 phosphoribulokinase; Provisional
Probab=99.88 E-value=6.3e-22 Score=202.10 Aligned_cols=171 Identities=20% Similarity=0.302 Sum_probs=133.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC-HHHHHHHHHcccCCccccccCCCCCccHHHHHH
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT-AEGQAKLREANRGNALLEFRGNAGSHDLQLSVE 306 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~-~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e 306 (476)
..+|++|||+|++|||||||++.|..+|... .+.++++||||.. ..++.. .+..+ -.|+++|++++.+
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~--~~~vi~~Dd~~~~~~~~r~~----~g~~~-----l~p~~~~~d~l~~ 73 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEE--LVTVICTDDYHSYDRKQRKE----LGITA-----LDPRANNLDIMYE 73 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccC--ceEEEEecccccCCHHHHHh----cCCcc-----cCccchHHHHHHH
Confidence 3578999999999999999999999998532 4678999999854 233222 11111 1488999999999
Q ss_pred HHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhh
Q 044604 307 TLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEA 386 (476)
Q Consensus 307 ~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~d 386 (476)
.|..| +.|+.+..|.||+.+. ...+ +..+ .|.+||||||+++++. +.+++
T Consensus 74 ~l~~L----~~g~~I~~P~yd~~~g----~~~~---~~~i-~p~~iVIvEG~~~l~~------------------~~lr~ 123 (327)
T PRK07429 74 HLKAL----KTGQPILKPIYNHETG----TFDP---PEYI-EPNKIVVVEGLHPLYD------------------ERVRE 123 (327)
T ss_pred HHHHH----HCCCceecceeecCCC----CcCC---cEec-CCCcEEEEechhhcCc------------------HhHHh
Confidence 99999 4899999999999862 2222 2344 5679999999998753 34778
Q ss_pred hhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhh
Q 044604 387 YFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLY 452 (476)
Q Consensus 387 y~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~ 452 (476)
++|+ ++|||+ +.+....||++|+.+ .+|++.|++.+.+...+|.++.|+.+..
T Consensus 124 ~~D~-~I~Vda-------~~evr~~Rri~Rd~~-----rrG~s~eei~~~i~~r~pd~~~yI~P~k 176 (327)
T PRK07429 124 LYDF-KVYLDP-------PEEVKIAWKIKRDMA-----KRGHTYEQVLAEIEAREPDFEAYIRPQR 176 (327)
T ss_pred hCCE-EEEEEC-------CHHHHHHHHHHHHHh-----hcCCCHHHHHHHHHHhCccHhhhhcccc
Confidence 8888 777776 889999999999863 4689999999999999999999988754
No 23
>PRK07667 uridine kinase; Provisional
Probab=99.87 E-value=1.1e-21 Score=185.00 Aligned_cols=176 Identities=19% Similarity=0.276 Sum_probs=123.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHH-H
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVET-L 308 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~-L 308 (476)
.+++|||+|++||||||+|+.|...|+..|.++.++++||||.+...+... .++ +.... +..++|++.|.+. +
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~--~~~--~~~~~--~~~~~d~~~L~~~v~ 89 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHT--GFE--EWYEY--YYLQWDIEWLRQKFF 89 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhc--CCC--chhhh--hhhhhhHHHHHHHHH
Confidence 459999999999999999999999998889999999999999876643221 110 01111 1235788888754 5
Q ss_pred HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604 309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF 388 (476)
Q Consensus 309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~ 388 (476)
..| +.|+.+..|.||+.... +.. .+..+ ++.+||||||++++. ..+.+++
T Consensus 90 ~~L----~~~~~i~~P~~d~~~~~----~~~--~~~~~-~~~~vvIvEG~~l~~-------------------~~~~~~~ 139 (193)
T PRK07667 90 RKL----QNETKLTLPFYHDETDT----CEM--KKVQI-PIVGVIVIEGVFLQR-------------------KEWRDFF 139 (193)
T ss_pred Hhh----cCCCeEEEeeecccccc----ccc--cceec-CCCCEEEEEehhhhh-------------------hhHHhhc
Confidence 878 47889999999998632 222 12234 567999999999652 3466666
Q ss_pred hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEE
Q 044604 389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLII 467 (476)
Q Consensus 389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl 467 (476)
|+ .+|||+ +++..++|.++|+ .+...+|..+|+|+++.|+.... | . ..|++||
T Consensus 140 d~-~v~V~~-------~~~~~~~R~~~r~------------~~~~~~~~~r~~~a~~~y~~~~~---~-~--~~ad~i~ 192 (193)
T PRK07667 140 HY-MVYLDC-------PRETRFLRESEET------------QKNLSKFKNRYWKAEDYYLETES---P-K--DRADLVI 192 (193)
T ss_pred eE-EEEEEC-------CHHHHHHHHhccc------------HhHHHHHHHHhHHHHHHHHhhcC---h-H--hhCcEEe
Confidence 66 556665 5666655555432 33457899999999999987654 3 2 3456776
No 24
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.87 E-value=5.3e-21 Score=184.36 Aligned_cols=190 Identities=21% Similarity=0.277 Sum_probs=136.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEE-EeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSAT-ISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVET 307 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~v-ISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~ 307 (476)
.+|++|||+|++|||||||++.|..++...+..+.+ |++|+||.+...+... +.+..+|.|+++|++.+.++
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~-------g~~~~~~~~~~~d~~~~~~~ 103 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAH-------GLRPRKGAPETFDVAGLAAL 103 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhc-------ccccccCCCCCCCHHHHHHH
Confidence 578999999999999999999999999887777777 9999999998755431 34455789999999999999
Q ss_pred HHHhhhhhcCCc-eEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhh
Q 044604 308 LTAISKLTKEGT-KMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEA 386 (476)
Q Consensus 308 L~~Lk~~~k~G~-~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~d 386 (476)
|..|+ .|+ .+.+|.||+.... ...+ +..+.++.+|||+||.++++... ....+.+
T Consensus 104 l~~l~----~~~~~i~~P~yD~~~~~----~~~~--~~~~~~~~~ivIvEG~~~l~~~~--------------~~~~l~~ 159 (229)
T PRK09270 104 LRRLR----AGDDEVYWPVFDRSLED----PVAD--AIVVPPTARLVIVEGNYLLLDEE--------------PWRRLAG 159 (229)
T ss_pred HHHHH----cCCCceecccCCcccCC----CCCC--ceEecCCCCEEEEcCcceeeccc--------------cHHHHHh
Confidence 99995 565 8999999998743 2222 23444456899999999986421 1133555
Q ss_pred hhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHhHHhhhhhhhhcCCCCCCCCceE
Q 044604 387 YFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVS-RYLPAYHAYLPTLYSEGPNGSDPEHTL 465 (476)
Q Consensus 387 y~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~-r~~Paye~Y~~~l~~~~P~~a~~~~~L 465 (476)
++|+ .+||| + +.+...+|..+|.. ..|++++++.+.+. +.+|.++ |+.+. + ..+++
T Consensus 160 ~~D~-vi~v~------~-~~~~~~~R~~~R~~------~~g~s~~~~~~~~~~~~~~~~~-~i~~~------~--~~ad~ 216 (229)
T PRK09270 160 LFDF-TIFLD------A-PAEVLRERLVARKL------AGGLSPEAAEAFVLRNDGPNAR-LVLET------S--RPADL 216 (229)
T ss_pred hCCE-EEEEE------C-CHHHHHHHHHHHHH------hcCCCHHHHHHHHHhcChHHHH-HHHhc------C--CCCCE
Confidence 5555 44444 4 55666666666642 36999999976665 5677653 44332 2 34568
Q ss_pred EEEeCCC
Q 044604 466 IIEIDDG 472 (476)
Q Consensus 466 vl~id~~ 472 (476)
||+.+..
T Consensus 217 vI~n~~~ 223 (229)
T PRK09270 217 VLEMTAT 223 (229)
T ss_pred EEEecCC
Confidence 8887643
No 25
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.87 E-value=2.3e-21 Score=193.20 Aligned_cols=166 Identities=24% Similarity=0.402 Sum_probs=129.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC-HHHHHHHHHcccCCccccccCCCCCccHHHHHHHHHHh
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT-AEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAI 311 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~-~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~L 311 (476)
||||+|++|||||||++.|..+|... .+.+|++||||.. ..++...+ ..+ -.|++++++++.+.|+.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~--~~~vi~~Dd~~~~~~~~r~~~g----~~~-----~~p~~~~~d~l~~~l~~L 69 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSD--LVTVICLDDYHSLDRKGRKETG----ITA-----LDPRANNFDLMYEQLKAL 69 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCC--ceEEEECcccccCCHHHHHHhh----ccc-----ccccchhHHHHHHHHHHH
Confidence 69999999999999999999998543 4678999999964 33332211 111 148899999999999999
Q ss_pred hhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhhhhh
Q 044604 312 SKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAW 391 (476)
Q Consensus 312 k~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~Dlw 391 (476)
+.|+.+..|.||+.+.. ..+ +..+ .|.+||||||+++++. +.+++++|+
T Consensus 70 ----k~g~~i~~P~y~~~~~~----~~~---~~~i-~~~~ivIvEG~~~l~~------------------~~l~~~~D~- 118 (273)
T cd02026 70 ----KEGQAIEKPIYNHVTGL----IDP---PELI-KPTKIVVIEGLHPLYD------------------ERVRELLDF- 118 (273)
T ss_pred ----HCCCCcccccccccCCC----cCC---cEEc-CCCCEEEEeeehhhCc------------------hhhhhhccE-
Confidence 47999999999998732 222 2234 5679999999998863 357888888
Q ss_pred hhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhh
Q 044604 392 DKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLY 452 (476)
Q Consensus 392 ~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~ 452 (476)
++|||+ +.+..++||++|+.+ .+|++.|++.+.+...+|.++.|+++..
T Consensus 119 ~I~vd~-------~~e~r~~r~i~Rd~~-----rrG~s~e~v~~~i~~r~~~~~~~I~P~~ 167 (273)
T cd02026 119 SVYLDI-------SDEVKFAWKIQRDMA-----ERGHSLEDVLASIEARKPDFEAYIDPQK 167 (273)
T ss_pred EEEEEC-------ChhHHHHHHHHHHHH-----HhCCCHHHHHHHHHhhchhHHHHhcccc
Confidence 777777 789999999999874 3689999998888778999999988754
No 26
>PRK06547 hypothetical protein; Provisional
Probab=99.72 E-value=4.6e-17 Score=152.29 Aligned_cols=154 Identities=17% Similarity=0.108 Sum_probs=109.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL 308 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L 308 (476)
.+|.+|+|+|++||||||+|+.|++.+ .+.++++|+||.+..++ + .+.+.+.+.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~-----~~~~~~~d~~~~~~~~~------------------~--~~~~~l~~~~ 67 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART-----GFQLVHLDDLYPGWHGL------------------A--AASEHVAEAV 67 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh-----CCCeecccceecccccC------------------C--hHHHHHHHHH
Confidence 568999999999999999999999876 46789999999654321 1 1233333333
Q ss_pred HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604 309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF 388 (476)
Q Consensus 309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~ 388 (476)
. ..|+...+| ||+.+.. + . .|..+ .|.++||+||.+++. +.+++++
T Consensus 68 l------~~g~~~~~~-yd~~~~~----~-~--~~~~l-~~~~vVIvEG~~al~-------------------~~~r~~~ 113 (172)
T PRK06547 68 L------DEGRPGRWR-WDWANNR----P-G--DWVSV-EPGRRLIIEGVGSLT-------------------AANVALA 113 (172)
T ss_pred H------hCCCCceec-CCCCCCC----C-C--CcEEe-CCCCeEEEEehhhcc-------------------HHHHHHh
Confidence 2 246667778 9998632 1 1 23445 566899999999974 3467777
Q ss_pred h-----hhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhhcCCCCCCCCc
Q 044604 389 D-----AWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEH 463 (476)
Q Consensus 389 D-----lw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~ 463 (476)
| + .+|||+ +.+.+++|+++|+.. ...|.++|+|+++.|+.... | + ++|
T Consensus 114 d~~g~v~-~I~ld~-------~~~vr~~R~~~Rd~~-------------~~~~~~~w~~~e~~~~~~~~---~-~--~~a 166 (172)
T PRK06547 114 SLLGEVL-TVWLDG-------PEALRKERALARDPD-------------YAPHWEMWAAQEERHFARYD---P-R--DVA 166 (172)
T ss_pred ccCCCEE-EEEEEC-------CHHHHHHHHHhcCch-------------hhHHHHHHHHHHHHHHhcCC---C-h--hcc
Confidence 6 5 666666 778888888877631 57899999999998887763 2 3 567
Q ss_pred eEEEE
Q 044604 464 TLIIE 468 (476)
Q Consensus 464 ~Lvl~ 468 (476)
++++.
T Consensus 167 d~~~~ 171 (172)
T PRK06547 167 DWLGS 171 (172)
T ss_pred EEEec
Confidence 78763
No 27
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.63 E-value=8e-16 Score=164.24 Aligned_cols=180 Identities=21% Similarity=0.331 Sum_probs=144.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc---C--CCeEEEeccccccC--HHHHHHHHHcccCCccccccCCCCCcc
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVT---G--RKSATISIDDFYLT--AEGQAKLREANRGNALLEFRGNAGSHD 300 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~---G--~~v~vISlDDFYl~--~~er~~la~~~p~npLl~~rG~P~t~D 300 (476)
...|++||++|+++|||||.+..+...|.+. | ..+++++.|-||.. ..++.. +..+ .+.+ ++|+++|
T Consensus 41 ~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~-a~~~----~~~f-~~pda~~ 114 (473)
T KOG4203|consen 41 GKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAK-AQEG----KYNF-DHPDAFD 114 (473)
T ss_pred CcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHH-hhhc----cccc-cCCCCcc
Confidence 4689999999999999999988888777521 2 36888999999963 333322 3332 2333 6899999
Q ss_pred HHHHHHHHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHH
Q 044604 301 LQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETV 380 (476)
Q Consensus 301 ~~lL~e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~v 380 (476)
.+++...++.+ ++|..|.+|.||+.+++ +.++ .+..+ .|.+++|+||+++++
T Consensus 115 ~~l~~~~~~~~----~kg~~v~ip~y~~~~~~----~~~~-~~~~l-~~~~~~ilegil~~y------------------ 166 (473)
T KOG4203|consen 115 FELLYLTLKNL----KKGKAVEIPVYDFVTHS----RDEE-KTIVV-YPADVIILEGILAFY------------------ 166 (473)
T ss_pred hhhHHHHHhcc----cccceeeceeeeeeccc----CCCC-ceEEe-cCCCceeehhHHHHh------------------
Confidence 99999999999 58999999999999976 3333 23455 566999999999996
Q ss_pred hHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhhhc
Q 044604 381 NKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLYSE 454 (476)
Q Consensus 381 n~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~~~ 454 (476)
+++++++++. ++|+|+ |.+....||+.|+. ..+|++.+.+ .++.+++.|+|..|+++....
T Consensus 167 d~~~~~l~~~-k~fvd~-------~~d~rla~ri~r~~-----~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ 228 (473)
T KOG4203|consen 167 DERVRDLFTM-KLFVDT-------DADVRLARRILRDI-----VERGRDLESILTQYSTFVKPAFEEFILPTKKY 228 (473)
T ss_pred HHHHHHHhcc-eEEEec-------CcchhhHHHHhcch-----hhhcccHHHHHHHHHhhcCchHHHHhhHHHHh
Confidence 4678888888 999998 89999999999886 3578999988 899999999999999987753
No 28
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.62 E-value=2.9e-15 Score=146.64 Aligned_cols=164 Identities=19% Similarity=0.203 Sum_probs=119.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH-------cCCCe-EEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRV-------TGRKS-ATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQ 302 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~-------~G~~v-~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~ 302 (476)
...+|++|+.|+||||++.++...... .-.++ .+|.||+|++.++++... ++|.. --.+||.|.|||-.
T Consensus 119 ~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f--~dP~~-AharRGapwTFD~~ 195 (323)
T KOG2702|consen 119 EELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLF--KDPQT-AHARRGAPWTFDSN 195 (323)
T ss_pred hheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhh--cChHH-HHhhcCCCcccCHH
Confidence 458999999999999999988874321 12344 448999999999887764 33321 23678999999999
Q ss_pred HHHHHHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhH
Q 044604 303 LSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNK 382 (476)
Q Consensus 303 lL~e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~ 382 (476)
++.+.++-||+. .-..+.+|.|||.. ||++++. .-|.....|||+||.|++.+..+ ++
T Consensus 196 lfl~l~k~lkk~--t~~~iyvPsFdHa~----gDPv~Dd--icVs~~~rIvI~EGnYlLl~~~~--------------Wk 253 (323)
T KOG2702|consen 196 LFLQLCKILKKT--TIPDIYVPSFDHAL----GDPVPDD--ICVSKFTRIVILEGNYLLLDQEN--------------WK 253 (323)
T ss_pred HHHHHHHHHhhc--CCCceecccccccc----CCCCccc--eeecccceEEEEeccEEEecCcc--------------HH
Confidence 999999999642 34589999999976 6777764 34556679999999999986442 56
Q ss_pred HHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCC--CCHHHH
Q 044604 383 NLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPG--MSDEEV 433 (476)
Q Consensus 383 ~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~G--mS~EeV 433 (476)
.+.+.||. +-|||. +.+...++-..|.. ..| -+.+|+
T Consensus 254 di~k~~d~-k~~idV-------~~~~a~~RVa~RHl------~sGl~~t~~ea 292 (323)
T KOG2702|consen 254 DIYKTLDD-KYKIDV-------DYEAAEERVAKRHL------QSGLVTTIAEA 292 (323)
T ss_pred HHHHHhhh-heeccc-------cHHHHHHHHHHHhh------cccccCCHHHH
Confidence 67777777 556776 66666665554443 356 456665
No 29
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.53 E-value=4.9e-15 Score=142.20 Aligned_cols=166 Identities=19% Similarity=0.208 Sum_probs=108.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLT 309 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~ 309 (476)
+.+||||+|.+.|||||||+.|++.|. .+.+|++||||+|.+|..... |. +..++.+++.|++.+.+.+.
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~----~~~lIhqDDFyKp~~Ei~v~~-----~n-~~~wd~~esLdm~~fl~~ia 72 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFP----GCSLIHQDDFYKPENEIEVDY-----NN-IDNWDLLESLDMEKFLEKIA 72 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHcc----CCeeeccccccCchhhhhccc-----CC-cchhcchhhhhHHHHHHHHH
Confidence 468999999999999999999999995 577999999999988655421 11 33458999999999999886
Q ss_pred HhhhhhcCCceE--------EeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHh
Q 044604 310 AISKLTKEGTKM--------KLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVN 381 (476)
Q Consensus 310 ~Lk~~~k~G~~v--------~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn 381 (476)
..- ++...+ ..-.++|-.- ..+.-.-...|||+||.++.. +
T Consensus 73 ~~l---~~~~~~~~ar~~~v~~~~~~~~~~----------~~q~~~~~~~iviidGfmiy~------------------y 121 (225)
T KOG3308|consen 73 TWL---DSRHNAPEAREHLVSYANFEHYAQ----------QFQIKAYKNHIVIIDGFMIYN------------------Y 121 (225)
T ss_pred HHh---cCccccchHhhhhhhhhHHHHHhh----------hcCcccccCcEEEEecceEEe------------------c
Confidence 541 121111 1112222110 011111345799999999984 4
Q ss_pred HHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhh
Q 044604 382 KNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYS 453 (476)
Q Consensus 382 ~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~ 453 (476)
+.+.+.+|. + |++.+ +++.+.++|-.| .|....+--.|.-.+||.|+.+......
T Consensus 122 ~p~~~~~d~-~------im~~~-~y~~~krRr~~R---------t~y~p~~tgyfd~~~~P~Y~~~~~~~~d 176 (225)
T KOG3308|consen 122 KPQVDLFDR-I------IMLTL-DYETCKRRREAR---------TYYPPDDTGYFDPVVWPHYEKNFEEARD 176 (225)
T ss_pred chhhhhhhh-h------eeeec-cHHHHHHhhccc---------ccCCCCCCccccCccchHHHHHHHHHHh
Confidence 556666665 3 44444 666666555322 3443333355677789998888776654
No 30
>PRK08233 hypothetical protein; Provisional
Probab=99.37 E-value=3.6e-12 Score=116.45 Aligned_cols=146 Identities=16% Similarity=0.205 Sum_probs=89.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH--HHHHHHHcccCCccccccCCCCCccHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE--GQAKLREANRGNALLEFRGNAGSHDLQLSVET 307 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~--er~~la~~~p~npLl~~rG~P~t~D~~lL~e~ 307 (476)
+++||+|+|++||||||+|+.|...|. .+.++++|+|+.+.. +.... +......+.++++.+.+.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~----~~~~~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 68 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK----NSKALYFDRYDFDNCPEDICKW---------IDKGANYSEWVLTPLIKD 68 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC----CCceEEECCEEcccCchhhhhh---------hhccCChhhhhhHHHHHH
Confidence 468999999999999999999998873 346789999986532 11111 111112256677777666
Q ss_pred HHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhh
Q 044604 308 LTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAY 387 (476)
Q Consensus 308 L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy 387 (476)
|..+. ++ ...++||+||.+... ++.+.+.
T Consensus 69 l~~~~----~~-----------------------------~~~~~vivd~~~~~~------------------~~~~~~~ 97 (182)
T PRK08233 69 IQELI----AK-----------------------------SNVDYIIVDYPFAYL------------------NSEMRQF 97 (182)
T ss_pred HHHHH----cC-----------------------------CCceEEEEeeehhhc------------------cHHHHHH
Confidence 65552 11 012788999876643 2345566
Q ss_pred hhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhh
Q 044604 388 FDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPT 450 (476)
Q Consensus 388 ~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~ 450 (476)
+|+ .+|||+ +++..++|+++|...- ....--.+....|..+.+|.|.....+
T Consensus 98 ~d~-~i~l~~-------~~~~~~~R~~~R~~~~---~~~~~~~~~~~~~~~~~~~~y~~~~~~ 149 (182)
T PRK08233 98 IDV-TIFIDT-------PLDIAMARRILRDFKE---DTGNEIHNDLKHYLNYARPLYLEALHT 149 (182)
T ss_pred cCE-EEEEcC-------CHHHHHHHHHHHHhhh---ccccchhhHHHHHHHHHHHHHHHHhhc
Confidence 665 555555 6788888888876421 001111234567777777776655444
No 31
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=99.34 E-value=9.3e-12 Score=119.68 Aligned_cols=189 Identities=23% Similarity=0.363 Sum_probs=136.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc-CHHHHH-HHHHcccCCccccccCCCCCccHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL-TAEGQA-KLREANRGNALLEFRGNAGSHDLQLSVETLT 309 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl-~~~er~-~la~~~p~npLl~~rG~P~t~D~~lL~e~L~ 309 (476)
.||+|.|+||+|.||+..+..++|++..++++-|..|.|+. ++.+.. +++++......+.+.| |++.|+..|.+++.
T Consensus 6 PiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFg-peANdf~~LE~~f~ 84 (289)
T COG3954 6 PVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFG-PEANDFGLLEQTFI 84 (289)
T ss_pred ceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecC-ccccchHHHHHHHH
Confidence 48999999999999999999999999999999999999995 444322 2222222223366666 99999999999999
Q ss_pred HhhhhhcCC--c-eEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhh
Q 044604 310 AISKLTKEG--T-KMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEA 386 (476)
Q Consensus 310 ~Lk~~~k~G--~-~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~d 386 (476)
+.. +.| + .-.+..||....-++ ++..-..|+....|.||+..||++-+..... + ++..
T Consensus 85 eYg---~~G~Gr~R~YlHt~dEAvp~nq-~PGTFTpW~~lpe~sDvLFYEGLHGgvVt~~-------------~--nvAq 145 (289)
T COG3954 85 EYG---QSGKGRSRKYLHTYDEAVPWNQ-VPGTFTPWQPLPEPTDVLFYEGLHGGVVTPQ-------------H--NVAQ 145 (289)
T ss_pred Hhc---ccCCcchhhhhhchhhcCccCC-CCCCCCCcccCCCccceeeeeccccceecCc-------------c--cHhh
Confidence 886 344 2 244566776543332 2333446999988999999999998853221 2 2555
Q ss_pred hhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhh
Q 044604 387 YFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYS 453 (476)
Q Consensus 387 y~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~ 453 (476)
..|+ +|.+ -+-+-++|-.+- .|+++.+|.|.|.|.+-+-|-||.|-.|+.+.++
T Consensus 146 HvDl-------liGv---VPivNLEWIQK~---~RDt~~RGhSrEAVmDsivRsMdDYinyItPQFS 199 (289)
T COG3954 146 HVDL-------LVGV---VPIVNLEWIQKL---IRDTSERGHSREAVMDSVVRSMDDYINYITPQFS 199 (289)
T ss_pred hhce-------eeee---eeEeeHHHHHHH---HhcccccCccHHHHHHHHHHhhhhHHhhcCcccc
Confidence 5555 4433 234556776432 3566789999999999999999999999988774
No 32
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.59 E-value=3.2e-07 Score=80.64 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=28.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
||.|+|++||||||+|+.|...+ ....++.|+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~-----~~~~~~~~~i 33 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL-----GLPYLDTGGI 33 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-----CCceeccccC
Confidence 68999999999999999999887 3456888854
No 33
>PRK06762 hypothetical protein; Provisional
Probab=98.55 E-value=4.5e-07 Score=82.63 Aligned_cols=38 Identities=32% Similarity=0.274 Sum_probs=32.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
|.+|+|+|++||||||+|+.|+..+ |..+.+++.|.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHHHH
Confidence 6799999999999999999999887 4467788877665
No 34
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.43 E-value=6.6e-08 Score=90.22 Aligned_cols=108 Identities=22% Similarity=0.169 Sum_probs=59.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH-----HHHHHHHHcccCCccccccCCCCCccHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA-----EGQAKLREANRGNALLEFRGNAGSHDLQLSVET 307 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~-----~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~ 307 (476)
+|||+|+.||||||+++.|.. + .+.+|++|.+.... ....++....+. ..+ ...+..|...|.+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~-----g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~-~~~---~~~g~idr~~L~~~ 70 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L-----GIPVIDADKIAHEVYEPGGPALQAIVEAFGP-DIL---LEDGELDRKKLGEI 70 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C-----CCCEEecCHHHHhhhhcccHHHHHHHHHcCc-cee---CCCCcCCHHHHHHH
Confidence 599999999999999999987 3 35679999987532 112222222110 011 12367888766665
Q ss_pred H-HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccc
Q 044604 308 L-TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLG 361 (476)
Q Consensus 308 L-~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll 361 (476)
+ ..-.. ++.-+.+..|.+...... .. ... ....++|+|+-.++
T Consensus 71 vf~~~~~-~~~l~~i~hp~i~~~~~~----~~-----~~~-~~~~~vive~plL~ 114 (179)
T cd02022 71 VFADPEK-RKKLEAITHPLIRKEIEE----QL-----AEA-RKEKVVVLDIPLLF 114 (179)
T ss_pred HhCCHHH-HHHHHHHHHHHHHHHHHH----HH-----HHc-cCCCEEEEEehHhh
Confidence 4 21100 012235566765443210 01 011 12368999977765
No 35
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.39 E-value=4.2e-07 Score=98.71 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=55.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL 308 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L 308 (476)
.++.+|+|+|++||||||+|+.|+..| ....+++|+||+....... . . |.+ .-|...+...+
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l-----~~~~~d~g~~YR~~a~~~l-~-~----------~~~-~~~~~~l~~l~ 343 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKL-----GLLYLDTGAMYRAVTWLVL-Q-E----------GID-PQDEEALAELL 343 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc-----CCeEecCCceehHHHHHHH-H-c----------CcC-CcCHHHHHHHH
Confidence 367899999999999999999999998 3688999999986543221 1 1 111 11233334444
Q ss_pred HHhhhhh----cCCceEEeeccccccc
Q 044604 309 TAISKLT----KEGTKMKLPRYDKSAY 331 (476)
Q Consensus 309 ~~Lk~~~----k~G~~v~iP~YD~s~~ 331 (476)
..++-.. ..|..|.+|.||...+
T Consensus 344 ~~l~~~~~~~~~~~~~i~~~~~dv~~~ 370 (512)
T PRK13477 344 SDLKIELKPSSGSPQRVWINGEDVTEA 370 (512)
T ss_pred hcCCeeeccCCCCCceEEeCCcchHhh
Confidence 4443211 1335688999987654
No 36
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.37 E-value=3e-06 Score=76.69 Aligned_cols=36 Identities=36% Similarity=0.420 Sum_probs=30.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.+|+|+|++||||||+|+.|+..| ...+++.|+++.
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~l-----g~~~~~~~~~~~ 36 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKL-----SLKLISAGDIFR 36 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc-----CCceecHHHHHH
Confidence 379999999999999999998877 345788887664
No 37
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.32 E-value=4.2e-07 Score=78.01 Aligned_cols=34 Identities=41% Similarity=0.488 Sum_probs=30.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
||+|+|++||||||+|+.|++.+ ...+|++|+|+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~-----~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL-----GFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-----TCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-----CCeEEEecceE
Confidence 69999999999999999999988 46789999954
No 38
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.11 E-value=4.5e-06 Score=79.96 Aligned_cols=52 Identities=31% Similarity=0.353 Sum_probs=42.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH-HHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE-GQAKLRE 282 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~-er~~la~ 282 (476)
|.||.+.||+|+||||++..|+..+...|.+|.+|++|.|.-..- +++.+++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~ 53 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAE 53 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHH
Confidence 789999999999999999999999987799999999999987543 4444444
No 39
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.11 E-value=8.7e-06 Score=79.17 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=32.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
+++|+|.|++||||||+++.|+..| ....+..|++|..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~-----~~~~~~~g~~~r~ 39 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKL-----GYAYLDSGAMYRA 39 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-----CCceeeCchHHHH
Confidence 4789999999999999999999887 3456788888853
No 40
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.08 E-value=3e-06 Score=80.42 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=30.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
+++|||+|+.||||||+++.|.. + .+.+|..|.+.+
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~-----g~~~i~~D~~~~ 37 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-L-----GAPVIDADAIAH 37 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-c-----CCEEEEecHHHH
Confidence 46899999999999999999887 4 357899999864
No 41
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.06 E-value=8.2e-06 Score=84.43 Aligned_cols=56 Identities=21% Similarity=0.130 Sum_probs=45.9
Q ss_pred eHHHHHHHHHhhhhcCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 204 TYLFSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 204 PL~~~l~~~v~~~~~~~~~~~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
|+..+|-..+.. + .++|++|||.|++|||||||+..|...+...|.+|.+|++|.-
T Consensus 40 ~~~~~l~~~~~~---~--------~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~ 95 (332)
T PRK09435 40 ALAQELLDALLP---H--------TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS 95 (332)
T ss_pred HHHHHHHHHHhh---c--------CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence 666666555322 1 2468999999999999999999999999888999999999973
No 42
>PRK07261 topology modulation protein; Provisional
Probab=98.04 E-value=2.3e-05 Score=73.06 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=29.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.|+|.|++||||||||+.|...+ ....+++|+++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-----~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-----NCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-----CCCeEecCCEEe
Confidence 48999999999999999998776 345789999875
No 43
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.04 E-value=3.7e-06 Score=80.50 Aligned_cols=67 Identities=25% Similarity=0.248 Sum_probs=42.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc----ccCH-HHHHHHHHcccCCccccccCCCCCccHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF----YLTA-EGQAKLREANRGNALLEFRGNAGSHDLQLSVE 306 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF----Yl~~-~er~~la~~~p~npLl~~rG~P~t~D~~lL~e 306 (476)
++|||+|+.||||||+++.|.. + .+.+|..|.. |.+. ...+++.+.. ....+ ...|++|...|.+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~-----g~~vid~D~i~~~~~~~~~~~~~~l~~~f-g~~~~---~~~g~idR~~L~~ 71 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-E-----GFLIVDADQVARDIVEPGQPALAELAEAF-GDDIL---NPDGTLDRAGLAA 71 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-----CCeEEeCcHHHHHHHhcCCHHHHHHHHHh-Ccccc---CCCChhhHHHHHH
Confidence 4799999999999999999985 2 3578999964 4432 2233333321 11122 2347888877655
Q ss_pred HH
Q 044604 307 TL 308 (476)
Q Consensus 307 ~L 308 (476)
.+
T Consensus 72 ~v 73 (200)
T PRK14734 72 KA 73 (200)
T ss_pred HH
Confidence 43
No 44
>PRK04182 cytidylate kinase; Provisional
Probab=98.03 E-value=1.2e-05 Score=73.23 Aligned_cols=37 Identities=32% Similarity=0.446 Sum_probs=30.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
++|+|+|.+||||||+|+.|+..| | ..++.+|+++..
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~l---g--~~~id~~~~~~~ 37 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKL---G--LKHVSAGEIFRE 37 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc---C--CcEecHHHHHHH
Confidence 379999999999999999999887 3 456777777643
No 45
>PRK04040 adenylate kinase; Provisional
Probab=98.01 E-value=0.00017 Score=68.55 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=33.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
|.+|+|.|.+||||||+++.|...|. .....++.|+|+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~---~~~~~~~~g~~~~~ 41 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK---EDYKIVNFGDVMLE 41 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc---cCCeEEecchHHHH
Confidence 67999999999999999999998884 23567888998754
No 46
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.92 E-value=8e-06 Score=77.91 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=31.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.+|||+|+.||||||+|+.|...+ .+.+|+.|++.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~-----g~~~i~~D~~~~ 37 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK-----GIPILDADIYAR 37 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh-----CCeEeeCcHHHH
Confidence 379999999999999999999876 357789998864
No 47
>PRK13808 adenylate kinase; Provisional
Probab=97.90 E-value=4.6e-05 Score=79.05 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=29.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
|.|.|++||||||+|..|...+ .+..|++||.+.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y-----gl~~is~gdlLR 36 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY-----GIVQLSTGDMLR 36 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----CCceecccHHHH
Confidence 6689999999999999999877 457899999884
No 48
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.87 E-value=1.4e-05 Score=75.89 Aligned_cols=154 Identities=22% Similarity=0.246 Sum_probs=81.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc----cCH-HHHHHHHHcccCCccccccCCCCCccHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY----LTA-EGQAKLREANRGNALLEFRGNAGSHDLQLSVE 306 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY----l~~-~er~~la~~~p~npLl~~rG~P~t~D~~lL~e 306 (476)
++|||+|+-||||||+++.|+. + .+.+|..|..- .+. ....++.+..+. .++. .-|+.|...|.+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~-----G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~-~il~---~~g~idR~~L~~ 70 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-L-----GFPVIDADEIAHELYEPGSEGYKALKERFGE-EILD---EDGEIDRKKLAE 70 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-T-----T-EEEEHHHHHHHCTSCTCHHHHHHHHHHGG-GGBE---TTSSB-HHHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-C-----CCCEECccHHHHHHhhcCHHHHHHHHHHcCc-cccC---CCCCChHHHHHH
Confidence 5899999999999999999887 3 56789999654 343 333344333211 1232 236888887766
Q ss_pred HH----HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhH
Q 044604 307 TL----TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNK 382 (476)
Q Consensus 307 ~L----~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~ 382 (476)
.+ ..++. =+.+-.|.--..... + +... ....++++|.=.++-.
T Consensus 71 ~vF~d~~~~~~----L~~iihP~I~~~~~~----~-----~~~~-~~~~~~v~e~pLL~E~------------------- 117 (180)
T PF01121_consen 71 IVFSDPEKLKK----LENIIHPLIREEIEK----F-----IKRN-KSEKVVVVEIPLLFES------------------- 117 (180)
T ss_dssp HHTTSHHHHHH----HHHHHHHHHHHHHHH----H-----HHHC-HSTSEEEEE-TTTTTT-------------------
T ss_pred HHhcCHHHHHH----HHHHHhHHHHHHHHH----H-----HHhc-cCCCEEEEEcchhhhh-------------------
Confidence 54 11211 123344542221110 0 0011 1127888887665521
Q ss_pred HHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHH
Q 044604 383 NLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYH 445 (476)
Q Consensus 383 ~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye 445 (476)
.+ ..++|..|++.+| . +-|++|-.+ + +||+.+++.+.+..=+|..+
T Consensus 118 ~~-------~~~~D~vi~V~a~-~----e~ri~Rl~~---R--~~~~~~~~~~ri~~Q~~~~~ 163 (180)
T PF01121_consen 118 GL-------EKLCDEVIVVYAP-E----EIRIKRLME---R--DGLSEEEAEARIASQMPDEE 163 (180)
T ss_dssp TG-------GGGSSEEEEEE---H----HHHHHHHHH---H--HTSTHHHHHHHHHTS--HHH
T ss_pred hH-------hhhhceEEEEECC-H----HHHHHHHHh---h--CCCcHHHHHHHHHhCCCHHH
Confidence 12 2335666777664 2 333443221 1 38999999888888777643
No 49
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.84 E-value=1.2e-05 Score=77.78 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=45.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc----CHHHHHHHHHcccCCccccccCCCCCccHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL----TAEGQAKLREANRGNALLEFRGNAGSHDLQLS 304 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl----~~~er~~la~~~p~npLl~~rG~P~t~D~~lL 304 (476)
..|++|||+|+.||||||+++.|+..+ | +.++..|.... +.....++.+.. +..++. -+.+|...|
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~l---g--~~vidaD~i~~~l~~~~~~~~~i~~~f-G~~i~~----~g~idR~~L 73 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKL---N--LNVVCADTISREITKKPSVIKKIAEKF-GDEIVM----NKQINRAML 73 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHc---C--CeEEeccHHHHHHHCchHHHHHHHHHh-CHHhcc----CCCcCHHHH
Confidence 458999999999999999999998765 3 45788887753 222223333221 112222 267888777
Q ss_pred HHHH
Q 044604 305 VETL 308 (476)
Q Consensus 305 ~e~L 308 (476)
.+.+
T Consensus 74 ~~~v 77 (204)
T PRK14733 74 RAII 77 (204)
T ss_pred HHHH
Confidence 6654
No 50
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.83 E-value=6.8e-05 Score=75.48 Aligned_cols=46 Identities=33% Similarity=0.394 Sum_probs=39.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHc-C-CCeEEEeccccccCHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVT-G-RKSATISIDDFYLTAE 275 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-G-~~v~vISlDDFYl~~~ 275 (476)
++.+|+|.||+|+||||++..|...+... | .+|.+|++|.|.....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~ 240 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAV 240 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHH
Confidence 57799999999999999999999888765 5 7999999999875443
No 51
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.81 E-value=3.3e-05 Score=73.24 Aligned_cols=40 Identities=25% Similarity=0.140 Sum_probs=35.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
..+.||+|+|++|||||||++.|..+|...|.+|.+|-.|
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~ 43 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 3567999999999999999999999998888888888653
No 52
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.80 E-value=1.3e-05 Score=75.09 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=29.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+|||+|+.||||||+++.|.... ...+++.|.+-
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-----~~~~i~~D~~~ 34 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-----HFPVIDADKIA 34 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCeEEeCCHHH
Confidence 59999999999999999988764 35689999885
No 53
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.79 E-value=2.7e-05 Score=72.69 Aligned_cols=42 Identities=31% Similarity=0.296 Sum_probs=36.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+|++|-|+|.+||||||+|+.|...|...|.++.+|-.|.+-
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 478999999999999999999999999999999999888664
No 54
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.77 E-value=3.2e-05 Score=77.77 Aligned_cols=40 Identities=35% Similarity=0.480 Sum_probs=33.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
.+.++|||+|++|+|||||...|...+.+.|.+|.+|..|
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD 66 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVD 66 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC
Confidence 4578999999999999999999999998889999999999
No 55
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.75 E-value=3.2e-05 Score=71.34 Aligned_cols=42 Identities=24% Similarity=0.209 Sum_probs=35.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
.+|.+|.|.|++||||||+|+.|...|...+..+.++..|++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 467899999999999999999999999766666777766654
No 56
>PRK06217 hypothetical protein; Validated
Probab=97.74 E-value=2.5e-05 Score=72.93 Aligned_cols=36 Identities=28% Similarity=0.437 Sum_probs=31.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
.|.|.|.+||||||+|+.|++.| ....+++|+++..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l-----~~~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL-----DIPHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCcEEEcCceeec
Confidence 48999999999999999999887 3568999999963
No 57
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.74 E-value=5.3e-05 Score=80.95 Aligned_cols=48 Identities=31% Similarity=0.308 Sum_probs=42.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEG 276 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~e 276 (476)
.+|.+|+++|++||||||++..|+..+...|.+|.+|++|-|--...+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~e 145 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFD 145 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHH
Confidence 468999999999999999999999999888999999999988754333
No 58
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.73 E-value=0.00021 Score=67.70 Aligned_cols=37 Identities=32% Similarity=0.364 Sum_probs=29.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
.+|.|+|++||||||+|+.|+..+ |.+ ++|.-.++..
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~---gl~--~vsaG~iFR~ 37 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHL---GLK--LVSAGTIFRE 37 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHh---CCc--eeeccHHHHH
Confidence 379999999999999999999998 444 5666666643
No 59
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.71 E-value=5.3e-05 Score=69.83 Aligned_cols=41 Identities=29% Similarity=0.276 Sum_probs=36.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
++.+|+|.|.+||||||+|+.|...|...|.++.+|..|.+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 35699999999999999999999999877778888888866
No 60
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.71 E-value=5.4e-05 Score=71.70 Aligned_cols=44 Identities=23% Similarity=0.171 Sum_probs=37.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
..+|.+|+|.|.+||||||+++.|...|...|..+..|..|++.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 35689999999999999999999999887667777888777765
No 61
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.70 E-value=5.1e-05 Score=60.68 Aligned_cols=41 Identities=24% Similarity=0.431 Sum_probs=30.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE----eccccccCHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI----SIDDFYLTAE 275 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI----SlDDFYl~~~ 275 (476)
+|+|+|++||||||+++.|+..| .+.++.++ -+|+++....
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~~~I~eg~~~~~~ 45 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDEIVILEGLYASYK 45 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeEEEEecchhhhhh
Confidence 58999999999999999999998 34455444 3455554433
No 62
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.68 E-value=8e-05 Score=74.87 Aligned_cols=46 Identities=26% Similarity=0.182 Sum_probs=40.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA 274 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~ 274 (476)
.+|.+|++.|++|+||||++..|+..+...|.+|.+|.+|-|....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a 115 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAA 115 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHH
Confidence 4678999999999999999999999998889999999999876543
No 63
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.67 E-value=5.3e-05 Score=77.55 Aligned_cols=40 Identities=33% Similarity=0.422 Sum_probs=37.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
..+.+|||.|.+|+|||||...|-..|...|.+|.+|..|
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD 88 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD 88 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC
Confidence 5678999999999999999999999998899999999999
No 64
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.66 E-value=2.4e-05 Score=74.96 Aligned_cols=66 Identities=24% Similarity=0.258 Sum_probs=40.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc----CH-HHHHHHHHcccCCccccccCCCCCccHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL----TA-EGQAKLREANRGNALLEFRGNAGSHDLQLSVET 307 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl----~~-~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~ 307 (476)
+|||+|+.||||||+++.|... .+.+++.|..-+ +. ...+++.+.. +..++. .-|+.|...|.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~------g~~~i~~D~i~~~~~~~~~~~~~~i~~~f-G~~i~~---~~g~idr~~L~~~ 70 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL------GAFGISADRLAKRYTEPDSPILSELVSLL-GPSILD---ENGKPNRKKISEI 70 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC------CCEEEecchHHHHHHhcCcHHHHHHHHHh-ChhhcC---CCCccCHHHHHHH
Confidence 5899999999999999988642 367788897742 22 2233333221 111221 2367888776665
Q ss_pred H
Q 044604 308 L 308 (476)
Q Consensus 308 L 308 (476)
+
T Consensus 71 v 71 (196)
T PRK14732 71 V 71 (196)
T ss_pred H
Confidence 4
No 65
>PRK14528 adenylate kinase; Provisional
Probab=97.64 E-value=0.00032 Score=66.15 Aligned_cols=35 Identities=34% Similarity=0.309 Sum_probs=29.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.|.|.|++||||||+|+.|+..+ .+..|++|+...
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~-----~~~~is~~~~lr 37 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL-----SIPQISTGDILR 37 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCCeeeCCHHHH
Confidence 47899999999999999998877 356788888873
No 66
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.64 E-value=0.00018 Score=80.41 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=34.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE 275 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~ 275 (476)
++..+|.|.||+||||||+|+.|.+.|+ ...+.+|.||+.-.
T Consensus 440 ~~~~~i~i~g~~~~gks~~~~~l~~~~~-----~~~~~~~~~~~~~~ 481 (661)
T PRK11860 440 DRVPVICIDGPTASGKGTVAARVAEALG-----YHYLDSGALYRLTA 481 (661)
T ss_pred cCcceEEeeCCCCCCHHHHHHHHHHHhC-----CeEecHHHhhhHHH
Confidence 3355899999999999999999999983 34699999997643
No 67
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.60 E-value=9e-05 Score=68.96 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=36.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.++.+|+|.|.+||||||+++.|...+...|..+..+..|++-
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 4678999999999999999999999997767777778777653
No 68
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.60 E-value=3.9e-05 Score=67.38 Aligned_cols=35 Identities=34% Similarity=0.408 Sum_probs=30.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
||-++|++||||||+|+.|...+ ...+|+.|.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~-----~~~~i~~D~~~~ 35 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL-----GAVVISQDEIRR 35 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS-----TEEEEEHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHC-----CCEEEeHHHHHH
Confidence 57899999999999999998776 378899999653
No 69
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.60 E-value=0.00019 Score=65.22 Aligned_cols=35 Identities=29% Similarity=0.268 Sum_probs=30.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
|+|.|++||||||+|+.|...+ ....|+.|+|+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l-----~~~~v~~D~~~~~ 35 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL-----GAKFIEGDDLHPA 35 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc-----CCeEEeCccccCh
Confidence 5689999999999999999887 3577899999753
No 70
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.60 E-value=9.4e-05 Score=67.94 Aligned_cols=41 Identities=29% Similarity=0.340 Sum_probs=36.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
++|++.|++|+||||++..+...+.+.|.++.++..|.|..
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 47899999999999999999999888888999999997653
No 71
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.59 E-value=0.0001 Score=75.89 Aligned_cols=45 Identities=24% Similarity=0.209 Sum_probs=40.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
.+|.+|++.|++||||||++..|+..+...|.+|.++..|-|-..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~ 156 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAA 156 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchh
Confidence 467899999999999999999999999888889999999987543
No 72
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.59 E-value=9.4e-05 Score=78.03 Aligned_cols=67 Identities=27% Similarity=0.320 Sum_probs=43.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC----H-HHHHHHHHcccCCccccccCCCCCccHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT----A-EGQAKLREANRGNALLEFRGNAGSHDLQLSVE 306 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~----~-~er~~la~~~p~npLl~~rG~P~t~D~~lL~e 306 (476)
++|||+|+.||||||+++.|+. + .+.+|..|..-.. . ....++.+.. +..++. .-|++|...|.+
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~-----G~~vidaD~i~~~l~~~~~~~~~~i~~~f-G~~il~---~~G~idr~~L~~ 71 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-L-----GAVVVDADVLAREVVEPGTEGLAALVAAF-GDDILL---ADGALDRPALAA 71 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-----CCeEEehHHHHHHHhcCChHHHHHHHHHh-ChHhcC---CCCcCCHHHHHH
Confidence 4699999999999999999986 3 4678999977532 2 2223332221 112222 236899887766
Q ss_pred HH
Q 044604 307 TL 308 (476)
Q Consensus 307 ~L 308 (476)
.+
T Consensus 72 ~v 73 (395)
T PRK03333 72 KA 73 (395)
T ss_pred HH
Confidence 54
No 73
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.57 E-value=6.8e-05 Score=77.96 Aligned_cols=42 Identities=31% Similarity=0.326 Sum_probs=37.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH-HcCCCeEEEeccccccCH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR-VTGRKSATISIDDFYLTA 274 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~-~~G~~v~vISlDDFYl~~ 274 (476)
++.+.|.+||||||+++.|...|. ..|.+|.++++|||+...
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~ 43 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEA 43 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccccc
Confidence 356899999999999999998887 579999999999999643
No 74
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.56 E-value=0.00012 Score=74.24 Aligned_cols=43 Identities=33% Similarity=0.353 Sum_probs=39.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.++.+|||.|++|||||||+..|...+...|.+|.+|..|..+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4578999999999999999999999998889999999999766
No 75
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.55 E-value=0.00038 Score=66.13 Aligned_cols=27 Identities=26% Similarity=0.053 Sum_probs=23.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
.+|.+|.|+|||||||||+++.|...+
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 357899999999999999999886653
No 76
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.53 E-value=0.00012 Score=66.72 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=29.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEE-Eecc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSAT-ISID 268 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~v-ISlD 268 (476)
+|+|+|+++||||||++.|...|...|.++.+ .++|
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~ 38 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTD 38 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-S
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEcc
Confidence 79999999999999999999999888998874 4544
No 77
>PRK10867 signal recognition particle protein; Provisional
Probab=97.51 E-value=0.00014 Score=77.86 Aligned_cols=54 Identities=30% Similarity=0.235 Sum_probs=43.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCCeEEEeccccccCH-HHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVT-GRKSATISIDDFYLTA-EGQAKLRE 282 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-G~~v~vISlDDFYl~~-~er~~la~ 282 (476)
.+|.+|.++|++||||||++..|+..|... |.+|.+|+.|-|--.. +++..+++
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~ 153 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGE 153 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHh
Confidence 468999999999999999999999988877 8999999999865332 23444443
No 78
>PRK08118 topology modulation protein; Reviewed
Probab=97.51 E-value=7.5e-05 Score=69.54 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=30.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
-|.|.|++||||||+|+.|...+ .+.++++|+.+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l-----~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL-----NIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCCceecchhhc
Confidence 48899999999999999999988 456789998764
No 79
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.50 E-value=0.0001 Score=69.17 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=33.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS 266 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS 266 (476)
+.|+||+|.++||||||...|...|++.|.+|.+|-
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence 469999999999999999999999999999999984
No 80
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.00015 Score=69.65 Aligned_cols=42 Identities=26% Similarity=0.229 Sum_probs=38.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
.+|++|=++|.|||||||+|.+|...|.+.|..+.++-.|.-
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 568999999999999999999999999999999988877754
No 81
>PRK14974 cell division protein FtsY; Provisional
Probab=97.48 E-value=0.00019 Score=74.57 Aligned_cols=46 Identities=28% Similarity=0.229 Sum_probs=40.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA 274 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~ 274 (476)
.+|.+|++.|++|+||||++..|...|...|.+|.++..|-|-...
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a 183 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGA 183 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHH
Confidence 4689999999999999999999999998888899999999885544
No 82
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.47 E-value=9e-05 Score=68.66 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=31.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
.+|.++|++||||||+|+.|+..+. .....+..|+|+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~---~~~~~~~~D~~~~~ 41 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA---EPWLHFGVDSFIEA 41 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC---CCccccCccHHHHh
Confidence 3799999999999999999998873 23456789999854
No 83
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.47 E-value=0.00022 Score=69.08 Aligned_cols=50 Identities=24% Similarity=0.183 Sum_probs=41.7
Q ss_pred CCc-EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHH
Q 044604 229 LPW-WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAK 279 (476)
Q Consensus 229 ~~P-~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~ 279 (476)
.+| +.|+|.||+|||||||...+.+.|+.. .++++|.-|=++...+++-.
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~ 60 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLR 60 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHH
Confidence 456 899999999999999998888888654 79999999999876665543
No 84
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.47 E-value=0.0017 Score=73.38 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=33.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE 275 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~ 275 (476)
+|+|+|++||||||+|+.|+..|. ...+.+..+|...+
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~-----~~~~~~g~~~r~~~ 40 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLG-----YAYLDTGAMYRACA 40 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcEeecCcEeHHHH
Confidence 799999999999999999999983 46789999997654
No 85
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.47 E-value=0.00011 Score=65.85 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=31.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
+|.|+|++||||||+|+.|...+ ....++.|.|...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccccH
Confidence 57899999999999999999886 3577899999864
No 86
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00016 Score=76.98 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=53.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH-HHHHHHHHcccCCccccccCCCC--CccHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA-EGQAKLREANRGNALLEFRGNAG--SHDLQLSV 305 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~-~er~~la~~~p~npLl~~rG~P~--t~D~~lL~ 305 (476)
.+|.+|+|.|+.||||||++..|+..|...|.+|.++++|-|-... +++...++.. |.|- ..|-..+.
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~l---------gipv~v~~d~~~L~ 309 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI---------GFEVIAVRDEAAMT 309 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhc---------CCcEEecCCHHHHH
Confidence 3478999999999999999999999888778999999999986432 3333333221 2221 34556666
Q ss_pred HHHHHhh
Q 044604 306 ETLTAIS 312 (476)
Q Consensus 306 e~L~~Lk 312 (476)
+.|..++
T Consensus 310 ~aL~~lk 316 (436)
T PRK11889 310 RALTYFK 316 (436)
T ss_pred HHHHHHH
Confidence 7776663
No 87
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.46 E-value=0.00023 Score=75.98 Aligned_cols=124 Identities=25% Similarity=0.275 Sum_probs=77.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH-HHHHHHHHcccCCccccccCCCCCccH-HHHH
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA-EGQAKLREANRGNALLEFRGNAGSHDL-QLSV 305 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~-~er~~la~~~p~npLl~~rG~P~t~D~-~lL~ 305 (476)
.++|.||-.+|-|||||||+|..|+..|+..|.+|.+++.|=|-... ++++.+++.... | +.+.....|. +...
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v-~---~f~~~~~~~Pv~Iak 172 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV-P---FFGSGTEKDPVEIAK 172 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCC-c---eecCCCCCCHHHHHH
Confidence 46799999999999999999999999999999999999999876543 456667766422 2 2233223333 3456
Q ss_pred HHHHHhhhhhcCCceEEeeccccccccCCCCCCCCC--------CCceecCCCcEEEEcccccccCCCc
Q 044604 306 ETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPS--------TWPEIEGPLTVVLYEGWMLGFKPLP 366 (476)
Q Consensus 306 e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~--------~w~~V~~P~DVVIVEG~~ll~~p~~ 366 (476)
+.|+..+. ++ ..+=..|-. | |..-. .-..+..|..+++|=--+.++.+..
T Consensus 173 ~al~~ak~---~~--~DvvIvDTA-----G-Rl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~ 230 (451)
T COG0541 173 AALEKAKE---EG--YDVVIVDTA-----G-RLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVN 230 (451)
T ss_pred HHHHHHHH---cC--CCEEEEeCC-----C-cccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHH
Confidence 66777652 22 112223321 1 22111 0112236777777777777776543
No 88
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.45 E-value=0.00016 Score=66.27 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=32.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
.+|.|.|+.||||||+++.|+..|...|.++..+.-.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~ 37 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP 37 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 3799999999999999999999998888888776543
No 89
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.00098 Score=70.74 Aligned_cols=75 Identities=19% Similarity=0.137 Sum_probs=54.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH-HHHHHHHHcccCCccccccCCC--CCccHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA-EGQAKLREANRGNALLEFRGNA--GSHDLQLSV 305 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~-~er~~la~~~p~npLl~~rG~P--~t~D~~lL~ 305 (476)
.++.+|+|.|++||||||++..|...+...|.+|.+|++|.|--.. +++...++.. |+| ...|...+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~l---------gvpv~~~~dp~dL~ 274 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKL---------DVELIVATSPAELE 274 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcC---------CCCEEecCCHHHHH
Confidence 4577999999999999999999998887778999999999986543 3444444321 222 245667777
Q ss_pred HHHHHhh
Q 044604 306 ETLTAIS 312 (476)
Q Consensus 306 e~L~~Lk 312 (476)
+.|..++
T Consensus 275 ~al~~l~ 281 (407)
T PRK12726 275 EAVQYMT 281 (407)
T ss_pred HHHHHHH
Confidence 7777663
No 90
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.43 E-value=0.00018 Score=77.07 Aligned_cols=54 Identities=30% Similarity=0.295 Sum_probs=43.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC-HHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT-AEGQAKLRE 282 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~-~~er~~la~ 282 (476)
.+|.+|.++|++|+||||++..|+..|.+.|.+|.+|+.|.|--. .+++..++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~ 147 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAE 147 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999999888999999999987432 233444443
No 91
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.42 E-value=0.00017 Score=66.61 Aligned_cols=36 Identities=33% Similarity=0.415 Sum_probs=33.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
||+|+|++|||||||+..|...|+..|.+|.+|-.|
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 689999999999999999999998889999999766
No 92
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.41 E-value=0.00017 Score=73.84 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=33.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+.|++|.|+|++||||||+|..|+..| |.. .+|++|.|-
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l---~~~-~vi~~D~~r 128 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL---GIR-SVIGTDSIR 128 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh---CCC-EEEechHHH
Confidence 469999999999999999999999888 344 578999886
No 93
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.39 E-value=0.00027 Score=65.83 Aligned_cols=38 Identities=37% Similarity=0.376 Sum_probs=34.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.+|+|+|++|||||||+..|...|...|.+|.+|-.|.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~ 39 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDH 39 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 48999999999999999999999988899998887654
No 94
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.39 E-value=0.00024 Score=75.98 Aligned_cols=44 Identities=30% Similarity=0.308 Sum_probs=38.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCCeEEEecccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFR-VTGRKSATISIDDFYL 272 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~-~~G~~v~vISlDDFYl 272 (476)
.+|.+|.++|++||||||+|..|+..|. +.|.+|.+|++|-|-.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 4689999999999999999999998876 4689999999998543
No 95
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.39 E-value=0.00014 Score=67.05 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=30.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
||.|.|++||||||+|+.|+..+ .+..|++||...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~-----~~~~is~~d~lr 35 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF-----GFTHLSAGDLLR 35 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc-----CCeEEECChHHH
Confidence 58899999999999999999877 468899998875
No 96
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.38 E-value=0.00018 Score=65.62 Aligned_cols=39 Identities=28% Similarity=0.311 Sum_probs=32.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
||.|.|.+||||||+|+.|...+...|.++..+..|.+-
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 578999999999999999999997667777777666543
No 97
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.38 E-value=0.00013 Score=62.31 Aligned_cols=22 Identities=45% Similarity=0.542 Sum_probs=21.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 044604 234 IGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL 255 (476)
|+|+|.+||||||+|+.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999987
No 98
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.37 E-value=0.0002 Score=68.79 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=29.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
..|++|||+|+.||||||+++.|..+ .+.++..|..
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~~------g~~v~d~D~i 38 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAEM------GCELFEADRV 38 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHC------CCeEEeccHH
Confidence 45799999999999999999998863 4567888844
No 99
>PRK03839 putative kinase; Provisional
Probab=97.36 E-value=0.00018 Score=66.57 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=30.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.|.|.|++||||||+++.|++.+ ....+++|+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~-----~~~~id~d~~~~ 36 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL-----GYEYVDLTEFAL 36 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEehhhhhh
Confidence 58899999999999999999988 356799998863
No 100
>PRK13768 GTPase; Provisional
Probab=97.35 E-value=0.00028 Score=69.91 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=35.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
+++|.|.|+.||||||++..+...+...|.+|.+|.+|
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D 39 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLD 39 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECC
Confidence 57899999999999999999999998889999999888
No 101
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.35 E-value=0.00016 Score=65.17 Aligned_cols=37 Identities=22% Similarity=0.107 Sum_probs=31.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.+.+|.|.|++||||||+|+.|+..| ....+..|++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l-----~~~~~d~d~~~ 39 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL-----GYDFIDTDHLI 39 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh-----CCCEEEChHHH
Confidence 35689999999999999999999998 35677888775
No 102
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.34 E-value=0.00019 Score=70.24 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=33.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
+|-++|.+||||||+|+.|+..|...|.++.+++.|.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 47799999999999999999999877888888877764
No 103
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.33 E-value=0.00015 Score=66.66 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=29.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.+|+|.|++||||||+|+.|...+ ....+++|++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~-----g~~~~~~g~~~~ 39 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY-----GFTHLSTGDLLR 39 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHHHHHH
Confidence 478999999999999999999876 346788887653
No 104
>PLN02200 adenylate kinase family protein
Probab=97.32 E-value=0.00024 Score=69.81 Aligned_cols=40 Identities=18% Similarity=0.033 Sum_probs=34.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.+.|++|.|.|++||||||+|+.|+..+ .+..|+++|...
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~-----g~~his~gdllR 79 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETF-----GFKHLSAGDLLR 79 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh-----CCeEEEccHHHH
Confidence 4578999999999999999999998877 356788888874
No 105
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.31 E-value=0.00016 Score=71.39 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=27.1
Q ss_pred EeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 236 FSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 236 IaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
|.||.||||||+++.+++.+...|.++.+|.+|
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 689999999999999999999889999999999
No 106
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.31 E-value=0.0067 Score=59.78 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=34.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
..+++|...|-+|.|||++|+.|.+.|+-.|.++.+++.-+|
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~y 51 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDY 51 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccc
Confidence 567999999999999999999999999977999999987765
No 107
>PLN02422 dephospho-CoA kinase
Probab=97.30 E-value=0.0002 Score=70.87 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=42.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc----CHH-HHHHHHHcccCCccccccCCCCCccHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL----TAE-GQAKLREANRGNALLEFRGNAGSHDLQLSVET 307 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl----~~~-er~~la~~~p~npLl~~rG~P~t~D~~lL~e~ 307 (476)
+|||+|+.||||||+++.|+. + .+.+|+.|+..+ +.. ...++.+.. +...+ ...|+.|-..|.+.
T Consensus 3 ~igltG~igsGKstv~~~l~~-~-----g~~~idaD~~~~~l~~~g~~~~~~l~~~F-G~~il---~~dG~idR~~L~~~ 72 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFKS-S-----GIPVVDADKVARDVLKKGSGGWKRVVAAF-GEDIL---LPDGEVDREKLGQI 72 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHH-C-----CCeEEehhHHHHHHHHhhHHHHHHHHHHh-CHHhc---CCCCcCCHHHHHHH
Confidence 799999999999999999883 2 457899998753 222 123333221 11122 23478898877665
Q ss_pred H
Q 044604 308 L 308 (476)
Q Consensus 308 L 308 (476)
+
T Consensus 73 V 73 (232)
T PLN02422 73 V 73 (232)
T ss_pred H
Confidence 4
No 108
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00017 Score=68.44 Aligned_cols=37 Identities=30% Similarity=0.324 Sum_probs=31.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA 274 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~ 274 (476)
.|.|.|++||||||+|+.|.+.+ ...-|++||++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~-----~i~hlstgd~~r~~ 38 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL-----GLPHLDTGDILRAA 38 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-----CCcEEcHhHHhHhh
Confidence 37799999999999999999886 46678888988754
No 109
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.28 E-value=0.00031 Score=64.30 Aligned_cols=36 Identities=39% Similarity=0.577 Sum_probs=33.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
+|++.|+.||||||++..+...+.+.|.++.++.+|
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 489999999999999999999998889999999999
No 110
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.27 E-value=0.00028 Score=66.93 Aligned_cols=43 Identities=30% Similarity=0.231 Sum_probs=32.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
...|.+|-|+|++||||||++..+...+. +..+++|..|+|-.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQ 54 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGG
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHH
Confidence 36799999999999999999998877764 45788999999864
No 111
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.26 E-value=0.00045 Score=66.22 Aligned_cols=42 Identities=33% Similarity=0.336 Sum_probs=33.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
|+.|||.|+.|||||||.+.+...+.. ..++.++..|-++..
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~-~~~~~~~~~d~~~~~ 42 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQ-KYQLAVITNDIYTQE 42 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCc-CCcEEEEeCCcCChh
Confidence 689999999999999999998888764 345777776665543
No 112
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.26 E-value=0.00025 Score=59.08 Aligned_cols=42 Identities=33% Similarity=0.271 Sum_probs=33.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
..|.|.|++|+||||+++.|...+...+..+..+..+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEE 44 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcccc
Confidence 478999999999999999999888654435777777766543
No 113
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.25 E-value=0.00029 Score=72.28 Aligned_cols=38 Identities=32% Similarity=0.333 Sum_probs=32.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc--ccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD--FYL 272 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD--FYl 272 (476)
.+.+|.|+||+||||||+|..|+..+ .+.+|+.|+ +|+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~-----~~~iis~Ds~Qvy~ 42 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRL-----NGEIISADSMQVYR 42 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhC-----CCcEEeccccceee
Confidence 45799999999999999999998876 467899999 664
No 114
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.22 E-value=0.00041 Score=72.27 Aligned_cols=37 Identities=27% Similarity=0.159 Sum_probs=33.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEec
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISI 267 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISl 267 (476)
+|++|+|+|.+|||||||+..|...|+.. .+|.+|-.
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~ 40 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKH 40 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEe
Confidence 68999999999999999999999999877 88888854
No 115
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.00053 Score=72.56 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=39.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHH----cCCCeEEEeccccccCHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRV----TGRKSATISIDDFYLTAEG 276 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~----~G~~v~vISlDDFYl~~~e 276 (476)
..|.+|.+.|++|+||||++..|+..+.. .|.+|.+|++|.|-....+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~e 223 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKK 223 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHH
Confidence 35789999999999999999999988763 3679999999998654433
No 116
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.19 E-value=0.0005 Score=69.47 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=33.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
+|+|+|.+|||||||+..|...|++.| +|.+|-.|.
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~ 38 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMD 38 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence 799999999999999999999999989 899997775
No 117
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.0018 Score=61.33 Aligned_cols=53 Identities=25% Similarity=0.143 Sum_probs=40.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCC
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGN 287 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~n 287 (476)
.-+.+|-|.|.+||||||.+++|...|+ ..-+-.|||+-+.. +++..+..|.|
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~-----~~F~dgDd~Hp~~N-veKM~~GipLn 62 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELG-----LKFIDGDDLHPPAN-VEKMTQGIPLN 62 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhC-----CcccccccCCCHHH-HHHHhcCCCCC
Confidence 4567999999999999999999999883 56789999986644 44444444433
No 118
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.13 E-value=0.0014 Score=69.66 Aligned_cols=73 Identities=25% Similarity=0.283 Sum_probs=55.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH--HcCCCeEEEeccccccCHHHHHH-HHHcccCCccccccCCC--CCccHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFR--VTGRKSATISIDDFYLTAEGQAK-LREANRGNALLEFRGNA--GSHDLQLSV 305 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~--~~G~~v~vISlDDFYl~~~er~~-la~~~p~npLl~~rG~P--~t~D~~lL~ 305 (476)
..||.+.||.|+||||+...|+..+. ....+|.+|++|.|--...+|-+ .++ +| |.| -.++..-|.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~------im---~vp~~vv~~~~el~ 273 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYAD------IM---GVPLEVVYSPKELA 273 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHH------Hh---CCceEEecCHHHHH
Confidence 56999999999999999999998887 33569999999999987765544 332 22 333 356677777
Q ss_pred HHHHHhh
Q 044604 306 ETLTAIS 312 (476)
Q Consensus 306 e~L~~Lk 312 (476)
+.+..++
T Consensus 274 ~ai~~l~ 280 (407)
T COG1419 274 EAIEALR 280 (407)
T ss_pred HHHHHhh
Confidence 7777773
No 119
>PRK12338 hypothetical protein; Provisional
Probab=97.11 E-value=0.00046 Score=71.30 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=29.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+|.+|.|+|++||||||+|+.|+..+ |. ..+..+|+.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l---~~--~~~~~tD~~ 39 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTL---NI--KHLIETDFI 39 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHC---CC--eEEccChHH
Confidence 58999999999999999999999887 32 345445554
No 120
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.11 E-value=0.00063 Score=59.58 Aligned_cols=39 Identities=33% Similarity=0.431 Sum_probs=33.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
++.|.|++|+||||++..+...+...|.++..++.+.-.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 478999999999999999988887777788888887654
No 121
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.11 E-value=0.00086 Score=62.42 Aligned_cols=38 Identities=26% Similarity=0.216 Sum_probs=32.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
..+|.|.|+.||||||+++.|+..|...|.++.++...
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~ 40 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREP 40 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 36899999999999999999999998888887666544
No 122
>PRK01184 hypothetical protein; Provisional
Probab=97.11 E-value=0.00038 Score=64.54 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=26.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.+|+|+|++||||||+++. ++..| +.++++||...
T Consensus 2 ~~i~l~G~~GsGKsT~a~~----~~~~g--~~~i~~~d~lr 36 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKI----AREMG--IPVVVMGDVIR 36 (184)
T ss_pred cEEEEECCCCCCHHHHHHH----HHHcC--CcEEEhhHHHH
Confidence 4899999999999999873 33334 55688887653
No 123
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.00062 Score=72.88 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=37.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH-HHcCCCeEEEeccccccC
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLF-RVTGRKSATISIDDFYLT 273 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL-~~~G~~v~vISlDDFYl~ 273 (476)
.++.+|+|.|++||||||++..|+..+ ...|.+|.++++|-|--.
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~a 266 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIA 266 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhh
Confidence 357899999999999999999998755 445888999999986543
No 124
>PRK14527 adenylate kinase; Provisional
Probab=97.10 E-value=0.00036 Score=65.53 Aligned_cols=39 Identities=26% Similarity=0.198 Sum_probs=32.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
.|.+|.|.|++||||||+|+.|+..+ .+..+++|+....
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~-----~~~~is~gd~~r~ 43 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL-----GLKKLSTGDILRD 43 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh-----CCCCCCccHHHHH
Confidence 56799999999999999999998877 3567888887743
No 125
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.10 E-value=0.00073 Score=63.53 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=31.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA 274 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~ 274 (476)
-+|+|.|++||||||+++.|..++. ...|..|+++...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~-----~~~i~gd~~~~~~ 41 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS-----AKFIDGDDLHPAK 41 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC-----CEEECCcccCCHh
Confidence 3789999999999999999999873 3578888886543
No 126
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.10 E-value=0.00043 Score=67.03 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.++|||+|+.||||||+|+.++. + .+.+|++|++-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~-----G~~vidaD~v~r 37 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-L-----GFPVIDADDVAR 37 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-c-----CCeEEEccHHHH
Confidence 47999999999999999999887 4 457899998875
No 127
>PLN02840 tRNA dimethylallyltransferase
Probab=97.10 E-value=0.0011 Score=70.85 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=46.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc--c---------CHHHHHHHHHcccCCccccccCCCC
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY--L---------TAEGQAKLREANRGNALLEFRGNAG 297 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY--l---------~~~er~~la~~~p~npLl~~rG~P~ 297 (476)
....+|.|+||+||||||||..|+..+. ..+|+.|.+. . +.+++.. -| |-|++..++-+
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~-----~~iis~Ds~qvYr~~~IgTaKpt~eE~~~----V~-Hhlidil~p~e 88 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLN-----GEIISADSVQVYRGLDVGSAKPSLSERKE----VP-HHLIDILHPSD 88 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCC-----CCeEeccccceecceeEEcCCCCHHHHcC----CC-eEeEeecCCCC
Confidence 3456899999999999999999998873 4689999853 2 1223221 22 23666667777
Q ss_pred CccHHHHH
Q 044604 298 SHDLQLSV 305 (476)
Q Consensus 298 t~D~~lL~ 305 (476)
.|....+.
T Consensus 89 ~ySv~~F~ 96 (421)
T PLN02840 89 DYSVGAFF 96 (421)
T ss_pred ceeHHHHH
Confidence 88876553
No 128
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.08 E-value=0.00077 Score=53.95 Aligned_cols=34 Identities=32% Similarity=0.375 Sum_probs=29.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS 266 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS 266 (476)
+|.+.|..|+||||++..|...|.+.|.++.++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4788999999999999999999988888776554
No 129
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.08 E-value=0.00087 Score=62.50 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=29.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI 265 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI 265 (476)
..+|.|.|+.||||||+++.|.+.|...|..+.+.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~ 37 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT 37 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence 46899999999999999999999998777555443
No 130
>PRK14530 adenylate kinase; Provisional
Probab=97.06 E-value=0.00055 Score=65.57 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=31.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
.|.|.|++||||||+|+.|+..+ .+..|++|++...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~-----~~~~i~~g~~lr~ 40 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF-----GVEHVTTGDALRA 40 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCeEEeccHHHHH
Confidence 58899999999999999999887 3567888888753
No 131
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.00051 Score=67.54 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=30.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
.++|+|.||+||||||+|+.|+..|+ ..-+.+=-+|+.
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg-----~~yldTGamYRa 41 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLG-----FHYLDTGAMYRA 41 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhC-----CCeecccHHHHH
Confidence 48999999999999999999999983 234555566643
No 132
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.02 E-value=0.00087 Score=69.93 Aligned_cols=40 Identities=25% Similarity=0.146 Sum_probs=36.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.+.+|+|+|.+|||||||...|...|++.|.+|.+|-.|.
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~ 243 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSH 243 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence 4679999999999999999999999999999999997664
No 133
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.0028 Score=69.77 Aligned_cols=47 Identities=28% Similarity=0.281 Sum_probs=38.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc--CCCeEEEeccccccCHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVT--GRKSATISIDDFYLTAEGQ 277 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~--G~~v~vISlDDFYl~~~er 277 (476)
.-+|+|.|++|+||||++..|...+... |.+|.+|++|.|.....++
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQ 398 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQ 398 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHH
Confidence 4689999999999999999998877554 4689999999987654433
No 134
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.02 E-value=0.0006 Score=63.05 Aligned_cols=34 Identities=32% Similarity=0.327 Sum_probs=30.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
|.|.|++||||||+|+.|+..+ .+..|++|+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~-----~~~~i~~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY-----GLPHISTGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCeEEECcHHHH
Confidence 7899999999999999999886 467899999874
No 135
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.02 E-value=0.0011 Score=71.90 Aligned_cols=46 Identities=24% Similarity=0.269 Sum_probs=37.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH-HcC-CCeEEEeccccccCHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFR-VTG-RKSATISIDDFYLTAE 275 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~-~~G-~~v~vISlDDFYl~~~ 275 (476)
++.||++.|++|+||||++..|...+. ..| .+|.+|.+|.|...-.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~ 302 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGH 302 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHH
Confidence 457999999999999999999998874 345 4899999998765543
No 136
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.99 E-value=0.00075 Score=66.43 Aligned_cols=40 Identities=20% Similarity=0.080 Sum_probs=34.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
+.|+-|.|.|++||||||+|+.|+..+ .+..|++|+.+..
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~-----g~~~is~gdllr~ 43 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKE-----NLKHINMGNILRE 43 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh-----CCcEEECChHHHH
Confidence 346679999999999999999999887 4788999999853
No 137
>PRK08356 hypothetical protein; Provisional
Probab=96.98 E-value=0.0009 Score=63.26 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=28.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
..+|+|+|++||||||+|+.|+. +|. .+|++.+.++
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~----~g~--~~is~~~~~~ 40 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE----KGF--CRVSCSDPLI 40 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH----CCC--cEEeCCCccc
Confidence 46899999999999999999952 344 3677777654
No 138
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.98 E-value=0.00088 Score=71.52 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=35.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH--HcCCCeEEEeccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFR--VTGRKSATISIDDFY 271 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~--~~G~~v~vISlDDFY 271 (476)
..+|++.||+|+||||++..|...+. ..|.+|.+|++|.|-
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 34899999999999999999988776 347899999999974
No 139
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.96 E-value=0.00061 Score=66.50 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=33.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA 274 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~ 274 (476)
+.+|+|+|++||||||+|+.|+..| ....++.|++|..-
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~-----~~~~~~~~~~~r~~ 42 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKL-----GFHYLDTGAMYRAV 42 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCchhHHHH
Confidence 5799999999999999999999887 35678999999753
No 140
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.96 E-value=0.00074 Score=60.04 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=28.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
|.|.|++||||||+|+.|+..| ....++.|.+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l-----~~~~~~~d~~~ 34 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL-----GLPFVDLDELI 34 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh-----CCCEEEchHHH
Confidence 7899999999999999999888 34578888775
No 141
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.93 E-value=0.00071 Score=67.38 Aligned_cols=37 Identities=24% Similarity=0.166 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+.+|-+.|++||||||+|+.|+..+. ....|+.|++.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r 38 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLR 38 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHH
Confidence 46788999999999999999988772 46788998873
No 142
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=96.92 E-value=0.00057 Score=64.85 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=31.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.||-+.|+|.|||||+|+.|+..|. ..-..+++|+|..
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~---~p~~~l~~D~f~~ 39 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLP---EPWLHLSVDTFVD 39 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSS---S-EEEEEHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCc---CCeEEEecChHHh
Confidence 3899999999999999999999984 2447899999985
No 143
>PRK14531 adenylate kinase; Provisional
Probab=96.92 E-value=0.00089 Score=62.66 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=31.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
..|.|.|++||||||+|+.|+..+ .+..|+++|....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~-----g~~~is~gd~lr~ 39 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH-----GLRHLSTGDLLRS 39 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-----CCCeEecccHHHH
Confidence 358899999999999999999887 3567999888753
No 144
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.0017 Score=68.59 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=37.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH-HcC-CCeEEEeccccccCHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFR-VTG-RKSATISIDDFYLTAEG 276 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~-~~G-~~v~vISlDDFYl~~~e 276 (476)
+.-+|++.||+|+||||++..|...+. ..| .+|.+|++|.|-....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~E 184 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHE 184 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHH
Confidence 346899999999999999999987754 446 58999999998665443
No 145
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=96.90 E-value=0.0013 Score=65.06 Aligned_cols=35 Identities=29% Similarity=0.232 Sum_probs=32.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS 266 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS 266 (476)
.+|+|+|.+||||||++..|...|+..|.+|.+|-
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 48999999999999999999999998899999984
No 146
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=96.90 E-value=0.0011 Score=71.16 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=33.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
||+|+|.+|||||||+..|...|+..|.+|.+|-.|
T Consensus 3 Vi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~ 38 (452)
T PRK14495 3 VYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHS 38 (452)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 899999999999999999999999999999999654
No 147
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.89 E-value=0.001 Score=65.84 Aligned_cols=51 Identities=29% Similarity=0.311 Sum_probs=35.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREA 283 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~ 283 (476)
+|+|.||||||||||-..|..+.+.-+-.+.+-..|-..++..++..++.+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~ 83 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRK 83 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHH
Confidence 899999999999999999988876532233333344455666666665544
No 148
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.89 E-value=0.0016 Score=57.52 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=33.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
|++.|..|+||||++..|...|.+.|.+|.+|.+|-
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 789999999999999999999988899999999998
No 149
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.88 E-value=0.0035 Score=63.40 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=52.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH-HHHHHHHcccCCccccccCCC--CCccHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE-GQAKLREANRGNALLEFRGNA--GSHDLQLSVE 306 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~-er~~la~~~p~npLl~~rG~P--~t~D~~lL~e 306 (476)
++.+|++.|++|+||||++..|...+...|.++.++++|.|..... ++...++. + |+| ...|.+.+.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~------~---~~~~~~~~~~~~l~~ 144 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT------I---GFEVIAVRDEAAMTR 144 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhh------c---CceEEecCCHHHHHH
Confidence 3468999999999999999999988876688999999998874332 22332221 1 222 3456677777
Q ss_pred HHHHhh
Q 044604 307 TLTAIS 312 (476)
Q Consensus 307 ~L~~Lk 312 (476)
.|..++
T Consensus 145 ~l~~l~ 150 (270)
T PRK06731 145 ALTYFK 150 (270)
T ss_pred HHHHHH
Confidence 777774
No 150
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.86 E-value=0.00087 Score=61.79 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=22.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+|.|.|++||||||+++.|...+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 789999999999999999988874
No 151
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.83 E-value=0.0018 Score=54.82 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=32.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
..|.|.|++|+||||+++.+...+...+..+..+..+.++.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE 60 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh
Confidence 36779999999999999999988865566676676666554
No 152
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.82 E-value=0.001 Score=66.53 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=35.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
||-..|.||+||||||.+....+.|++.|+++.+|.+|
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLD 39 (290)
T KOG1533|consen 2 PFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLD 39 (290)
T ss_pred CcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecC
Confidence 45567899999999999999999999999999999999
No 153
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.79 E-value=0.0014 Score=63.17 Aligned_cols=37 Identities=16% Similarity=-0.012 Sum_probs=28.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
.|.+|.|+|.+||||||+|+.|+..+ |.. .+++.|-+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~---~~~-~~~~~D~~ 38 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHR---AID-IVLSGDYL 38 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc---CCe-EEehhHHH
Confidence 46799999999999999999998886 332 34555533
No 154
>PRK14532 adenylate kinase; Provisional
Probab=96.79 E-value=0.0012 Score=61.43 Aligned_cols=35 Identities=23% Similarity=0.133 Sum_probs=30.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
|.|.|++||||||+|+.|+..+ .+..|++||....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~-----g~~~is~~d~lr~ 37 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER-----GMVQLSTGDMLRA 37 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCeEEeCcHHHHH
Confidence 6789999999999999998776 4678999988753
No 155
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.78 E-value=0.00097 Score=62.66 Aligned_cols=25 Identities=40% Similarity=0.311 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
..+|+|.|++|||||||++.|...+
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998876
No 156
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.78 E-value=0.00097 Score=63.65 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=29.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
|.|.|++||||||+|+.|+..+ .+..|+++|.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~-----g~~~is~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY-----GLPHISTGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCCeeehhHHHH
Confidence 6789999999999999998876 467899988874
No 157
>PLN02748 tRNA dimethylallyltransferase
Probab=96.78 E-value=0.0029 Score=68.55 Aligned_cols=67 Identities=21% Similarity=0.141 Sum_probs=48.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc--cccC---------HHHHHHHHHcccCCccccccCCCC
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD--FYLT---------AEGQAKLREANRGNALLEFRGNAG 297 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD--FYl~---------~~er~~la~~~p~npLl~~rG~P~ 297 (476)
..+.+|.|.||+||||||||..|+..+ .+.+|+.|. .|.. .+++. .- .|=|++..+.-+
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~-----~~eii~~DsmQVYrgLdIgTaKpt~eE~~----~V-pHHLid~v~p~e 89 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHF-----PVEIINADSMQVYSGLDVLTNKVPLHEQK----GV-PHHLLGVISPSV 89 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhc-----CeeEEcCchheeeCCcchhcCCCCHHHHc----CC-CCeeEeecCCCC
Confidence 456689999999999999999998887 478999996 7742 22222 12 233677767667
Q ss_pred CccHHHHH
Q 044604 298 SHDLQLSV 305 (476)
Q Consensus 298 t~D~~lL~ 305 (476)
.|+...+.
T Consensus 90 ~ysv~~F~ 97 (468)
T PLN02748 90 EFTAKDFR 97 (468)
T ss_pred cCcHHHHH
Confidence 88886554
No 158
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.0082 Score=63.76 Aligned_cols=80 Identities=25% Similarity=0.265 Sum_probs=57.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHH-HHHHHcccCCccccccCCCCCcc-HHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQ-AKLREANRGNALLEFRGNAGSHD-LQLSVE 306 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er-~~la~~~p~npLl~~rG~P~t~D-~~lL~e 306 (476)
.+|-||-+.|-+||||||+|..|+..+++.|.++.+|+-|-|--..-+| ++.+... .-|.+ |.-.-.| ...+.+
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~-~iP~y---gsyte~dpv~ia~e 174 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKA-RVPFY---GSYTEADPVKIASE 174 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhh-CCeeE---ecccccchHHHHHH
Confidence 5788999999999999999999999999999999999999998766544 3333332 11332 2111122 235566
Q ss_pred HHHHhh
Q 044604 307 TLTAIS 312 (476)
Q Consensus 307 ~L~~Lk 312 (476)
-++..|
T Consensus 175 gv~~fK 180 (483)
T KOG0780|consen 175 GVDRFK 180 (483)
T ss_pred HHHHHH
Confidence 677775
No 159
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.76 E-value=0.0011 Score=65.30 Aligned_cols=35 Identities=26% Similarity=0.212 Sum_probs=30.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEec
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISI 267 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISl 267 (476)
+|-++|.+||||||+|+.|+++|++.+..+..++-
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 45599999999999999999999998888877766
No 160
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.74 E-value=0.0014 Score=66.01 Aligned_cols=39 Identities=28% Similarity=0.233 Sum_probs=29.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+|-|+|-+||||||+|+.|+..|...+..|.+++-|++.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~ 41 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG 41 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 466999999999999999999999888899999866665
No 161
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=96.70 E-value=0.0013 Score=75.95 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=35.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE 275 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~ 275 (476)
..++|+|+|++||||||+|+.|+..|. ...|.+++||+.-+
T Consensus 33 ~~~~i~idG~~gsGKst~~~~la~~l~-----~~~~~~g~~yRa~a 73 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLG-----AQCLNTGSFYRAFT 73 (863)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC-----CcEEeHHHHHHHHH
Confidence 346999999999999999999999983 46799999997544
No 162
>PRK02496 adk adenylate kinase; Provisional
Probab=96.68 E-value=0.0017 Score=60.27 Aligned_cols=35 Identities=31% Similarity=0.360 Sum_probs=29.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.|.|.|++||||||+|+.|+..+ ++..+++|+...
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~-----~~~~i~~~~~~~ 37 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL-----HIPHISTGDILR 37 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEEhHHHHH
Confidence 47889999999999999999887 356788888763
No 163
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=96.67 E-value=0.0019 Score=64.33 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=43.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc----cCHH-HHHHHHHcccCCccccccCCCCCccHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY----LTAE-GQAKLREANRGNALLEFRGNAGSHDLQLSVE 306 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY----l~~~-er~~la~~~p~npLl~~rG~P~t~D~~lL~e 306 (476)
++|||+|+.||||||+++.|...+ ...+|..|-.- .+.. ..+++.+..+ +.++. ..|..|...|.+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~-----G~~viDaD~iar~l~~~~~~~~~~i~~~Fg-~~i~~---~dg~idR~~L~~ 72 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEH-----HIEVIDADLVVRELQAPNMACTRKIAARWP-LCVHP---ETGELNRAELGK 72 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-----CCeEEehHHHHHHHHcCChHHHHHHHHHhc-hhhcC---CCCcCCHHHHHH
Confidence 589999999999999999998764 35678888664 3332 2333333221 11221 136788887766
Q ss_pred HH
Q 044604 307 TL 308 (476)
Q Consensus 307 ~L 308 (476)
.+
T Consensus 73 ~V 74 (244)
T PTZ00451 73 II 74 (244)
T ss_pred HH
Confidence 43
No 164
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.0028 Score=60.19 Aligned_cols=35 Identities=29% Similarity=0.256 Sum_probs=30.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeE
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSA 263 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~ 263 (476)
+.+.-|+|+|++|+||||++..|...|+..|.+|.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg 37 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG 37 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence 34678999999999999999999999988776554
No 165
>PLN02165 adenylate isopentenyltransferase
Probab=96.66 E-value=0.0016 Score=67.82 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=30.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
...+|+|.||+||||||||..|+..++ ..+|+.|..
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~-----~eIIsaDs~ 77 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFP-----SEIINSDKM 77 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcC-----CceecCChh
Confidence 344899999999999999999998873 468899876
No 166
>PLN02924 thymidylate kinase
Probab=96.65 E-value=0.0032 Score=61.54 Aligned_cols=39 Identities=15% Similarity=0.012 Sum_probs=33.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS 266 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS 266 (476)
++...+|.|.|.-||||||+++.|++.|...|..|..+.
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ 51 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWR 51 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeee
Confidence 355679999999999999999999999998888875553
No 167
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0014 Score=65.47 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=23.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
++||.|+||||||||++.|..+.+.
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcccCC
Confidence 7999999999999999999988764
No 168
>PRK06761 hypothetical protein; Provisional
Probab=96.63 E-value=0.0022 Score=65.30 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=29.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI 265 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI 265 (476)
.+|.|.|++||||||+++.|...|...|..+.++
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~ 37 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELY 37 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEE
Confidence 4799999999999999999999997667766653
No 169
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.62 E-value=0.0022 Score=61.44 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=30.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.|.|.|++||||||+|+.|+..+ .+..|+++|...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~-----~~~~is~~dl~r 36 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY-----GIPHISTGDMLR 36 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEECCccHH
Confidence 47899999999999999999887 468899988764
No 170
>PRK07933 thymidylate kinase; Validated
Probab=96.62 E-value=0.0026 Score=61.54 Aligned_cols=36 Identities=33% Similarity=0.461 Sum_probs=32.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
+|.|.|.-||||||+++.|+..|+..|.+|.++.--
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 799999999999999999999999889888777543
No 171
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.61 E-value=0.0077 Score=56.88 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=34.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
+--++-|.|++||||||||..+.......|.+|+-|++++
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3468999999999999999888776656688899999988
No 172
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.61 E-value=0.0032 Score=59.91 Aligned_cols=42 Identities=26% Similarity=0.259 Sum_probs=35.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+..++.|.|++||||||||..+...+...|.+|..+++|.-+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLS 59 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 456899999999999999998887776668889889887544
No 173
>PRK13949 shikimate kinase; Provisional
Probab=96.59 E-value=0.0015 Score=60.90 Aligned_cols=34 Identities=35% Similarity=0.300 Sum_probs=29.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
-|.|.|+.||||||+++.|+..+ ....+.+|.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l-----~~~~id~D~~i 36 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL-----GLSFIDLDFFI 36 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCCeecccHHH
Confidence 38899999999999999999988 35678899765
No 174
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=96.59 E-value=0.003 Score=70.23 Aligned_cols=39 Identities=33% Similarity=0.284 Sum_probs=35.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
...||+|+|.+|||||||...|...|++.|.+|.+|-.|
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~ 47 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHA 47 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcC
Confidence 356999999999999999999999999999999999654
No 175
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.011 Score=67.70 Aligned_cols=73 Identities=23% Similarity=0.171 Sum_probs=50.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH-HcC-CCeEEEeccccccCH-HHHHHHHHcccCCccccccCCCC--CccHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFR-VTG-RKSATISIDDFYLTA-EGQAKLREANRGNALLEFRGNAG--SHDLQLS 304 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~-~~G-~~v~vISlDDFYl~~-~er~~la~~~p~npLl~~rG~P~--t~D~~lL 304 (476)
++.||++.|++|+||||++..|...+. ..| .+|.+++.|.|-... ++++..++.. |.|- ..|.+.+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~---------gvpv~~~~~~~~l 254 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRIL---------GVPVHAVKDAADL 254 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhC---------CCCccccCCHHHH
Confidence 357999999999999999999998774 445 488999999876443 3344443321 2222 3466667
Q ss_pred HHHHHHh
Q 044604 305 VETLTAI 311 (476)
Q Consensus 305 ~e~L~~L 311 (476)
.+.|..+
T Consensus 255 ~~al~~~ 261 (767)
T PRK14723 255 RFALAAL 261 (767)
T ss_pred HHHHHHh
Confidence 7777766
No 176
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.55 E-value=0.0024 Score=54.65 Aligned_cols=34 Identities=38% Similarity=0.433 Sum_probs=25.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
|-|.|++|+||||+++.+...+ |..+..+....+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc---cccccccccccc
Confidence 5689999999999999999987 334444444443
No 177
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.55 E-value=0.003 Score=69.92 Aligned_cols=42 Identities=26% Similarity=0.248 Sum_probs=36.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCCeEEEecccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRV-TGRKSATISIDDF 270 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~-~G~~v~vISlDDF 270 (476)
+++.+|.|.|.+||||||+|+.|+..|.. .|..+..+..|..
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 56789999999999999999999999976 5667788877755
No 178
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.54 E-value=0.0028 Score=70.56 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=39.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.+|.+|.+.|.+||||||+|+.|...|...|..+..|..|++..
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~ 501 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH 501 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh
Confidence 45899999999999999999999999987788889999999764
No 179
>PRK13947 shikimate kinase; Provisional
Probab=96.54 E-value=0.0024 Score=58.24 Aligned_cols=33 Identities=24% Similarity=0.164 Sum_probs=27.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
|.|.|++||||||+|+.|+..|. ...+..|.+.
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg-----~~~id~d~~~ 36 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLS-----FGFIDTDKEI 36 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC-----CCEEECchhh
Confidence 78999999999999999999983 3467888753
No 180
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.54 E-value=0.0039 Score=59.49 Aligned_cols=41 Identities=29% Similarity=0.183 Sum_probs=32.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
..+.+|++.|..|||||||...+...+.. +.++.++..|-+
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~~ 60 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDVI 60 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEEEECCCC
Confidence 46899999999999999999887766542 457888887754
No 181
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.54 E-value=0.0043 Score=67.67 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=43.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc-C------------------CCeEEEeccccccCHHHHHHHHHcccCCcccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVT-G------------------RKSATISIDDFYLTAEGQAKLREANRGNALLEFR 293 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~-G------------------~~v~vISlDDFYl~~~er~~la~~~p~npLl~~r 293 (476)
.|||.|++|||||||++.|..++... | ..+..+.+|.|..+..-++.+. .
T Consensus 371 ~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~-----------~ 439 (582)
T PRK11176 371 TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIA-----------Y 439 (582)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHh-----------c
Confidence 69999999999999999999888542 2 1234556666665544333221 1
Q ss_pred CCCCCccHHHHHHHHHH
Q 044604 294 GNAGSHDLQLSVETLTA 310 (476)
Q Consensus 294 G~P~t~D~~lL~e~L~~ 310 (476)
|.|+.+|-+.+.+.++.
T Consensus 440 ~~~~~~~~~~i~~al~~ 456 (582)
T PRK11176 440 ARTEQYSREQIEEAARM 456 (582)
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 44555666666666554
No 182
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.53 E-value=0.0034 Score=61.26 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=34.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
+|+|+|--|+||||+|..|+..|.+.|.+|.+|-+|-
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 6888899999999999999999998999999998883
No 183
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.52 E-value=0.0034 Score=62.04 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=34.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
+|+|.|--|+||||+|..|+..|.+.|.+|.+|-+|
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D 37 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCD 37 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 689999999999999999999999999999999888
No 184
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.50 E-value=0.0028 Score=59.12 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=28.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
..|.|.|++||||||+++.|...+ ....+.+|..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l-----~~~~vd~D~~ 38 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSDQE 38 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc-----CCcEEECCch
Confidence 358999999999999999999887 3557888874
No 185
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.48 E-value=0.0016 Score=59.83 Aligned_cols=24 Identities=42% Similarity=0.350 Sum_probs=21.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
.+|+|.|++||||||+++.|...+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 379999999999999999998765
No 186
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.48 E-value=0.0017 Score=60.75 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
.+|+|.|++||||||+++.|...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999997765
No 187
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.48 E-value=0.0044 Score=59.15 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=34.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
+|+|.|--|+||||++..|+..|.+.|.+|.+|=+|
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D 37 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCD 37 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 689999999999999999999999999999999888
No 188
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.007 Score=62.44 Aligned_cols=79 Identities=25% Similarity=0.251 Sum_probs=55.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc----------cC-HHHHHHHHHcccCCccccccCCCCC
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY----------LT-AEGQAKLREANRGNALLEFRGNAGS 298 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY----------l~-~~er~~la~~~p~npLl~~rG~P~t 298 (476)
.|.+|.|.||+|||||-+|-.|+..+ ...+||.|..- +| .++++ ..| |-|++.+++-++
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~-----~~eIIs~DSmQvYr~mdIGTAKps~~e~~----~vp-HhliDi~~p~e~ 71 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRL-----GGEIISLDSMQVYRGLDIGTAKPSLEELA----GVP-HHLIDIRDPTES 71 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHc-----CCcEEecchhhhcCCCcccCCCCCHHHHc----CCC-EEEecccCcccc
Confidence 46789999999999999999999888 46899999765 22 23332 223 347888888889
Q ss_pred ccHHHHHHHH-HHhhhhhcCC
Q 044604 299 HDLQLSVETL-TAISKLTKEG 318 (476)
Q Consensus 299 ~D~~lL~e~L-~~Lk~~~k~G 318 (476)
|+...+.+.. ..+...+.+|
T Consensus 72 ysa~~f~~~a~~~i~~i~~rg 92 (308)
T COG0324 72 YSAAEFQRDALAAIDDILARG 92 (308)
T ss_pred ccHHHHHHHHHHHHHHHHhCC
Confidence 9987655443 3343322445
No 189
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.45 E-value=0.0028 Score=66.56 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=37.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-----CCCeEEEec--------cccc--cCHHHHHHHHHc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVT-----GRKSATISI--------DDFY--LTAEGQAKLREA 283 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-----G~~v~vISl--------DDFY--l~~~er~~la~~ 283 (476)
.+..+++|+||+||||||||+.|+..|+.. |+ ...+.- |++. .|.+.|..+.++
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~-~Y~~~~~~~~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGR-RYTFKWNGEESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCc-eEEEEecCCCCCCccCCcccCCHHHHHHHHHH
Confidence 346789999999999999999999999763 22 233333 3333 366677766554
No 190
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.45 E-value=0.0042 Score=56.99 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=29.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
++.|.|++|+|||||+..+.....+.|.+|..++++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3679999999999999776655545688898888764
No 191
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.44 E-value=0.0022 Score=65.38 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=44.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc--cccC---------HHHHHHHHHcccCCccccccCCCCCccH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD--FYLT---------AEGQAKLREANRGNALLEFRGNAGSHDL 301 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD--FYl~---------~~er~~la~~~p~npLl~~rG~P~t~D~ 301 (476)
+|.|+||+|||||+||..|...+ ...+||.|+ +|+. .+++.. -| |-|++..+..+.|+.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~-----~~~iis~Ds~qvY~~l~IgTakp~~~e~~~----v~-hhlid~~~~~~~~~v 70 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKL-----NAEIISVDSMQIYKGMDIGTAKPSLQEREG----IP-HHLIDILDPSESYSA 70 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhC-----CCcEEEechhheeeeccccCCCCCHHHHcC----cc-EEEEEEechhheEcH
Confidence 58999999999999999998776 457899998 6642 122221 12 235666666777877
Q ss_pred HHHHH
Q 044604 302 QLSVE 306 (476)
Q Consensus 302 ~lL~e 306 (476)
..+.+
T Consensus 71 ~~f~~ 75 (287)
T TIGR00174 71 ADFQT 75 (287)
T ss_pred HHHHH
Confidence 54443
No 192
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.42 E-value=0.0026 Score=57.97 Aligned_cols=21 Identities=38% Similarity=0.281 Sum_probs=17.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 044604 234 IGFSAPQGCGKTTLAFALDYL 254 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~l 254 (476)
|+|+|+.|+|||||++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 889999999999999999877
No 193
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.41 E-value=0.0031 Score=63.68 Aligned_cols=39 Identities=28% Similarity=0.295 Sum_probs=33.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
.+.|+||.|.|+||+||||+|..|+..| |++ .+|++|..
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rL---gI~-~visTD~I 124 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRL---GIR-SVISTDSI 124 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHc---CCc-eeecchHH
Confidence 3679999999999999999999999888 555 57888854
No 194
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.40 E-value=0.0043 Score=64.54 Aligned_cols=57 Identities=25% Similarity=0.174 Sum_probs=48.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH-HHHHHHHHcc
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA-EGQAKLREAN 284 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~-~er~~la~~~ 284 (476)
.++|+||.+.|-.|+||||+...|+..|.+.|.+|.+.-.|-|--.. ++++.++++.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~ 193 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERL 193 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999999999999998654 3455566553
No 195
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.40 E-value=0.0044 Score=60.98 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=34.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
.+|+|+|--|+||||+|..|+..|.+.|.+|.+|=+|
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 3799999999999999999999999999999999888
No 196
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.40 E-value=0.0032 Score=60.37 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=22.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYL 254 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~l 254 (476)
+..+.+|.|.||+||||||+++.|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 456788999999999999999888643
No 197
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.39 E-value=0.0049 Score=58.70 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
+|.|+||+||||||+...|...+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 6899999999999999987777754
No 198
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.39 E-value=0.0023 Score=72.60 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=23.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
.|||.|.||||||||++.|..++..
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6999999999999999999988764
No 199
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.38 E-value=0.0029 Score=60.16 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 4899999999999999999998874
No 200
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.37 E-value=0.0021 Score=57.96 Aligned_cols=24 Identities=42% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+|+|.||+||||||+++.|.+.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999988763
No 201
>PRK13973 thymidylate kinase; Provisional
Probab=96.34 E-value=0.006 Score=58.71 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI 265 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI 265 (476)
..+|.|-|..||||||.++.|+..|...|.++..+
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 36788999999999999999999999888877655
No 202
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=96.31 E-value=0.0068 Score=55.58 Aligned_cols=39 Identities=31% Similarity=0.291 Sum_probs=33.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
|.-.++..|+||||+|..|+..|.+.|.+|.+|-+|-..
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~ 39 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQA 39 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTS
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCccc
Confidence 345678899999999999999999999999999999655
No 203
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.0073 Score=64.69 Aligned_cols=49 Identities=24% Similarity=0.237 Sum_probs=38.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH-HcC-CCeEEEeccccccCHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFR-VTG-RKSATISIDDFYLTAEGQA 278 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~-~~G-~~v~vISlDDFYl~~~er~ 278 (476)
.+-+|++.|++|+||||+...|...+. ..+ .++.+++.|.|-....++.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL 240 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQL 240 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHH
Confidence 456999999999999999999987543 223 5788899999887655443
No 204
>PRK00625 shikimate kinase; Provisional
Probab=96.29 E-value=0.0034 Score=59.17 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=28.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.|.|.|..||||||+++.|+..+ ....|.+|+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l-----~~~~id~D~~I 35 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL-----SLPFFDTDDLI 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCCEEEhhHHH
Confidence 48899999999999999999888 35568888764
No 205
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.29 E-value=0.0081 Score=56.28 Aligned_cols=24 Identities=38% Similarity=0.328 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
.+|.|.|||||||+|++..|...+
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 468899999999999999887664
No 206
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.29 E-value=0.0034 Score=59.70 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999998764
No 207
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.28 E-value=0.003 Score=60.08 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999987764
No 208
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.28 E-value=0.018 Score=55.15 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=34.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
...++.|.|++|+||||||..+...+...|.+|+.|++++|
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~ 62 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGL 62 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 45699999999999999998888766666889999999854
No 209
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=96.27 E-value=0.0068 Score=59.70 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=34.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
.||+|+|--|+||||+|..|+..|.+.|.+|.+|-+|
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 5889999999999999999999999999999999888
No 210
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.27 E-value=0.0041 Score=56.89 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=28.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.|.|.|.+||||||+++.|+..|. ...+..|.+.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg-----~~~~d~D~~~ 37 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG-----YRFVDTDQWL 37 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-----CCEEEccHHH
Confidence 477899999999999999999882 3567888765
No 211
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.25 E-value=0.0038 Score=59.06 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3899999999999999999998764
No 212
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=96.24 E-value=0.0062 Score=60.54 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=33.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
+|+|+|--|+||||+|..|+..|.+.|.+|.+|-+|
T Consensus 3 ~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~D 38 (279)
T PRK13230 3 KFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCD 38 (279)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 688889999999999999999999999999999777
No 213
>PHA00729 NTP-binding motif containing protein
Probab=96.24 E-value=0.0062 Score=60.27 Aligned_cols=26 Identities=27% Similarity=0.180 Sum_probs=22.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
...|.|.|++|+||||||..|...+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999988763
No 214
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=96.23 E-value=0.0062 Score=59.91 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=33.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
+|+|.|--|+||||+|-.|+..|.+.|.+|.+|=+|
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 688999999999999999999998889999999887
No 215
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.22 E-value=0.029 Score=55.06 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=31.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHc-CCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVT-GRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~-G~~v~vISlDD 269 (476)
-++.|+|++|+|||||+..+...+... |.+|..+|++.
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 378899999999999998887666444 88999999876
No 216
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.19 E-value=0.0069 Score=54.97 Aligned_cols=42 Identities=26% Similarity=0.165 Sum_probs=26.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
..+.+|-|.|++|+|||||.+.+...+...+.-+..+..+.+
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 456789999999999999999888888765333555666666
No 217
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.18 E-value=0.0058 Score=49.05 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
+..|.|++||||||+-.+++.+|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999887
No 218
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.17 E-value=0.0065 Score=57.62 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=32.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+..|.|.|++|+||||+|+.+...+...+..+..++.+++-
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 44677999999999999999988876666677777766664
No 219
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.15 E-value=0.0034 Score=59.35 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999988764
No 220
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.0045 Score=58.72 Aligned_cols=25 Identities=40% Similarity=0.626 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999988764
No 221
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.15 E-value=0.004 Score=54.96 Aligned_cols=21 Identities=33% Similarity=0.333 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~ 252 (476)
-+++|.|+||||||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 589999999999999999875
No 222
>PRK13975 thymidylate kinase; Provisional
Probab=96.13 E-value=0.0053 Score=57.16 Aligned_cols=25 Identities=36% Similarity=0.365 Sum_probs=23.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
.+|.|.|+.||||||+++.|+..|+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999985
No 223
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.0044 Score=59.79 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999998764
No 224
>PRK13946 shikimate kinase; Provisional
Probab=96.13 E-value=0.005 Score=57.75 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=28.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
+..|.+.|.+||||||+++.|+..| | ...+..|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L---g--~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML---G--LPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---C--CCeECcCH
Confidence 4579999999999999999999988 3 34567774
No 225
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=96.11 E-value=0.0083 Score=59.43 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=34.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
+|+|+|--|+||||+|-.|...|.+.|.+|.+|-.|=
T Consensus 3 ~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dp 39 (273)
T PRK13232 3 QIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDP 39 (273)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEeccc
Confidence 7888899999999999999999999999999998874
No 226
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.11 E-value=0.0036 Score=60.29 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3899999999999999999998774
No 227
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.11 E-value=0.015 Score=58.20 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=39.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCCeEEEeccccccCH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVT-GRKSATISIDDFYLTA 274 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-G~~v~vISlDDFYl~~ 274 (476)
..|++|||.|+=||||||+.+.+...|+.. ..+..++..|-+.+..
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~ 64 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDG 64 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCC
Confidence 579999999999999999999999999875 4467788888887653
No 228
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.10 E-value=0.0033 Score=58.67 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999987764
No 229
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.0047 Score=58.46 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999998764
No 230
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.09 E-value=0.0047 Score=58.81 Aligned_cols=25 Identities=32% Similarity=0.294 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999998764
No 231
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.09 E-value=0.0049 Score=58.36 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999998874
No 232
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.09 E-value=0.0035 Score=59.40 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999988764
No 233
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.09 E-value=0.008 Score=63.82 Aligned_cols=40 Identities=30% Similarity=0.255 Sum_probs=36.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
..+-+|.|.||+.||||||+..|...+-+.|.++.+|..|
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaD 110 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDAD 110 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCC
Confidence 4567899999999999999999999988889999999888
No 234
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.08 E-value=0.0036 Score=62.67 Aligned_cols=43 Identities=28% Similarity=0.407 Sum_probs=34.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc--------------CCCeEEEeccccccCHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVT--------------GRKSATISIDDFYLTAE 275 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~--------------G~~v~vISlDDFYl~~~ 275 (476)
+|+|.||||||||||-+.|+.+.+.. +++...+.+++-.+|+.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~ 87 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWL 87 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchh
Confidence 89999999999999999999887642 23566778888888875
No 235
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.0049 Score=58.84 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999988764
No 236
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.08 E-value=0.005 Score=58.16 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3899999999999999999988764
No 237
>PRK08727 hypothetical protein; Validated
Probab=96.08 E-value=0.0072 Score=59.10 Aligned_cols=40 Identities=35% Similarity=0.420 Sum_probs=34.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.|.|.|++|+|||.|+.++...+.+.|.++..++++++-.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~ 82 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG 82 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh
Confidence 3889999999999999999888877788888888877653
No 238
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.08 E-value=0.0053 Score=57.73 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3899999999999999999998774
No 239
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.07 E-value=0.0036 Score=61.95 Aligned_cols=36 Identities=31% Similarity=0.358 Sum_probs=26.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
-||.|.||||||||||-+.|..+=. +..-.|..|+-
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~ 64 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGE 64 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCE
Confidence 4899999999999999998875532 33445666663
No 240
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.07 E-value=0.0051 Score=59.34 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999998764
No 241
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.0053 Score=59.80 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRMND 53 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC
Confidence 3899999999999999999998763
No 242
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.07 E-value=0.0052 Score=59.39 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4899999999999999999987764
No 243
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.06 E-value=0.0083 Score=61.41 Aligned_cols=39 Identities=31% Similarity=0.393 Sum_probs=34.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+|-+.|.-|+||||+|.+++-.+.+.|.+|.++|+|--+
T Consensus 3 ~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 3 ILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred EEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 678999999999999999999999899999999999654
No 244
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.06 E-value=0.0052 Score=57.73 Aligned_cols=25 Identities=40% Similarity=0.272 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
.+|+|+|++|||||||.+.|..++.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4799999999999999999888775
No 245
>PRK13948 shikimate kinase; Provisional
Probab=96.06 E-value=0.0061 Score=58.04 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=31.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.+|..|.+.|..||||||+++.|+..|. ...|.+|.+.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg-----~~~iD~D~~i 45 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM-----LHFIDTDRYI 45 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC-----CCEEECCHHH
Confidence 4567899999999999999999998873 3567888544
No 246
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.06 E-value=0.016 Score=55.44 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=30.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHc------CCCeEEEeccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVT------GRKSATISIDD 269 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~------G~~v~vISlDD 269 (476)
.--++.|.|++||||||||..+....... +.+|..|++++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 44689999999999999998887543221 25677777776
No 247
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.05 E-value=0.0045 Score=68.05 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=23.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|.||||||||++.|..++..
T Consensus 318 E~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 38999999999999999999998865
No 248
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.04 E-value=0.01 Score=58.10 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=28.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
-+++|.|++|+||||||..+...+...|.++..++.+.
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~ 62 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL 62 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 48999999999999998655544434577887777654
No 249
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.03 E-value=0.0051 Score=58.95 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
-++||.|++|||||||.+.|..++
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 489999999999999999999887
No 250
>PRK12377 putative replication protein; Provisional
Probab=96.03 E-value=0.0072 Score=60.33 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=33.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
-+.|.|++|+|||+||.+|...+...|..|..++..++.
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~ 141 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVM 141 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHH
Confidence 577999999999999999999888778888877777654
No 251
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.02 E-value=0.0041 Score=60.08 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3899999999999999999987764
No 252
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.02 E-value=0.01 Score=49.82 Aligned_cols=37 Identities=30% Similarity=0.387 Sum_probs=32.0
Q ss_pred EEEeC-CCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 234 IGFSA-PQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 234 IGIaG-~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
|+|.| ..|+||||+|..|...+.+.|.++.++-+|-.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 55665 66999999999999999888999999999966
No 253
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.01 E-value=0.0047 Score=54.04 Aligned_cols=36 Identities=33% Similarity=0.394 Sum_probs=26.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
-++||.|++|||||||.+.|...+.. ..-.|..|+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~ 47 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGK 47 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTE
T ss_pred CEEEEEccCCCccccceeeecccccc---cccccccccc
Confidence 38999999999999999988877653 2334444443
No 254
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.01 E-value=0.0036 Score=59.28 Aligned_cols=25 Identities=40% Similarity=0.487 Sum_probs=22.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
++||.|++|||||||.+.|..++..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 51 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPP 51 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCC
Confidence 8999999999999999999987753
No 255
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.0056 Score=59.30 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999998764
No 256
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.0044 Score=59.58 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 38999999999999999999988753
No 257
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.98 E-value=0.01 Score=56.97 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=32.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.|.|.|++|+|||+||+++...+...|..+..++..++.
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 467999999999999999998876667788878776653
No 258
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.98 E-value=0.006 Score=58.47 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4899999999999999999998764
No 259
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=95.98 E-value=0.0065 Score=56.26 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=24.9
Q ss_pred eCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 237 SAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 237 aG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.|++||||||+++.|...+. ...|..|.++
T Consensus 1 ~G~sGsGKSTla~~la~~l~-----~~~~~~d~~~ 30 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH-----AAFLDGDFLH 30 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC-----CeEEeCccCC
Confidence 49999999999999998883 4667777775
No 260
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.97 E-value=0.0054 Score=62.10 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|.|||||||+++.|..+++.
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~p 65 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEP 65 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCC
Confidence 38999999999999999999998864
No 261
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.97 E-value=0.011 Score=58.65 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=33.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
+|+|+|--|+||||+|-.|...|.+.|.+|.+|-+|
T Consensus 3 ~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~D 38 (274)
T PRK13235 3 KVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCD 38 (274)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 788999999999999999999999999999999776
No 262
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=95.97 E-value=0.0072 Score=60.06 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=23.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 51 e~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 51 EVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4899999999999999999998874
No 263
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.0062 Score=58.16 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999998764
No 264
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.96 E-value=0.0093 Score=52.61 Aligned_cols=35 Identities=37% Similarity=0.442 Sum_probs=27.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
|-|.|++|+|||++++.|++.+ +.++..+++....
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~ 36 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDT 36 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hcceEEEEecccc
Confidence 5689999999999999999998 5566666665543
No 265
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.95 E-value=0.0057 Score=59.53 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999998764
No 266
>PHA02518 ParA-like protein; Provisional
Probab=95.95 E-value=0.012 Score=55.02 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=33.2
Q ss_pred EEEEeCC-CCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAP-QGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~-sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
||+|.+. -|+||||+|..|...|.+.|.+|.+|-+|--.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 5677755 45999999999999999999999999999543
No 267
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.026 Score=54.65 Aligned_cols=26 Identities=38% Similarity=0.262 Sum_probs=22.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
+..+|.|+||||+||||+++.|....
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 35789999999999999998877665
No 268
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.94 E-value=0.004 Score=59.04 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4899999999999999999988764
No 269
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.94 E-value=0.0042 Score=59.75 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4899999999999999999988764
No 270
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.93 E-value=0.0045 Score=57.52 Aligned_cols=37 Identities=30% Similarity=0.302 Sum_probs=27.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
-++||.|++|||||||.+.|..++.. ..--|..|+..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~ 63 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEEP---DSGSILIDGED 63 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEE
Confidence 48999999999999999999877643 23335555543
No 271
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.93 E-value=0.0047 Score=58.47 Aligned_cols=26 Identities=35% Similarity=0.330 Sum_probs=23.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC
Confidence 48999999999999999999988754
No 272
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.93 E-value=0.0048 Score=58.31 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999998764
No 273
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.90 E-value=0.01 Score=60.85 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=31.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
...++|+|.|++|||||||...+...|... .++++|.-|
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD 140 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGD 140 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCC
Confidence 356899999999999999999888877542 467777665
No 274
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.90 E-value=0.0067 Score=58.77 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999987764
No 275
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.90 E-value=0.0068 Score=58.22 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=23.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 34 QVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred eEEEEECCCCCCHHHHHHHHhCccC
Confidence 5899999999999999999998875
No 276
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.89 E-value=0.0061 Score=57.93 Aligned_cols=40 Identities=18% Similarity=0.022 Sum_probs=28.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
-++||.|++|||||||.+.|..++...++..-.|.+|+.-
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 4899999999999999999998875111223345556643
No 277
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.89 E-value=0.0061 Score=62.68 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=23.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||++.|..++.
T Consensus 34 e~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 34 EVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 3899999999999999999998875
No 278
>PRK05642 DNA replication initiation factor; Validated
Probab=95.89 E-value=0.0092 Score=58.46 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=35.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
.+.|.|++|+|||.|+.++...+...|.+|..++.++|...
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~ 87 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR 87 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh
Confidence 46799999999999999998877766889999999998754
No 279
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=95.88 E-value=0.013 Score=65.59 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-.|||.|++|||||||++.|..++..
T Consensus 480 e~vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 480 EFVAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 37999999999999999999988754
No 280
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.88 E-value=0.0085 Score=65.00 Aligned_cols=39 Identities=26% Similarity=0.236 Sum_probs=32.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
++|.+|.|+|.+||||||+|..|+..+. . ..+|++|.+-
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg---~-~~ii~tD~iR 291 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLG---I-TRIVSTDAVR 291 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC---C-cEEeehhHHH
Confidence 4699999999999999999999998873 3 3478998764
No 281
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.88 E-value=0.005 Score=58.65 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999987764
No 282
>PRK09183 transposase/IS protein; Provisional
Probab=95.87 E-value=0.009 Score=59.62 Aligned_cols=35 Identities=37% Similarity=0.411 Sum_probs=28.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEec
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISI 267 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISl 267 (476)
.|.|.|++|+|||+|+.+|...+...|.+|..++.
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 57799999999999999998776666777765543
No 283
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.87 E-value=0.0063 Score=59.69 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~p 58 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLNALSARLAP 58 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48999999999999999999988743
No 284
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.85 E-value=0.0074 Score=56.98 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999987764
No 285
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.85 E-value=0.0049 Score=58.73 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999998764
No 286
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.85 E-value=0.0065 Score=54.75 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=27.6
Q ss_pred EeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 236 FSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 236 IaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
|.||+||||||+|+.|+..+ ....|+..+...
T Consensus 1 i~G~PgsGK~t~~~~la~~~-----~~~~is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY-----GLVHISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH-----TSEEEEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc-----CcceechHHHHH
Confidence 67999999999999999987 467889888774
No 287
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.85 E-value=0.012 Score=64.49 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=22.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
-.+||.|+||||||||++.|...+
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999998877
No 288
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.85 E-value=0.0075 Score=56.72 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3899999999999999999988764
No 289
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.84 E-value=0.0051 Score=59.02 Aligned_cols=26 Identities=35% Similarity=0.224 Sum_probs=23.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLLPV 52 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48999999999999999999988753
No 290
>PRK04296 thymidine kinase; Provisional
Probab=95.84 E-value=0.015 Score=55.23 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=28.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI 265 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI 265 (476)
.++-|.|+.|+||||++..+...+...|.+|.++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 4788999999999999988777776668888887
No 291
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.84 E-value=0.0077 Score=58.52 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 30 EVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999987764
No 292
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.83 E-value=0.011 Score=57.86 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=32.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
.+.|.||+|+|||+|+.++...+...|.+|..++.|++
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 46799999999999999999887777888888888874
No 293
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.82 E-value=0.0055 Score=58.77 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999998764
No 294
>PRK14526 adenylate kinase; Provisional
Probab=95.82 E-value=0.0091 Score=58.04 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=28.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
|+|.|++||||||+|+.|+..+ ....|++++...
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~-----~~~~is~G~llr 36 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL-----NYYHISTGDLFR 36 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----CCceeecChHHH
Confidence 6799999999999999998876 345688888764
No 295
>PF13245 AAA_19: Part of AAA domain
Probab=95.81 E-value=0.016 Score=47.67 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=24.2
Q ss_pred EEEEeCCCCCcHHHH-HHHHHHHHHHc---CCCeEEEec
Q 044604 233 YIGFSAPQGCGKTTL-AFALDYLFRVT---GRKSATISI 267 (476)
Q Consensus 233 VIGIaG~sGSGKTTL-A~~L~~lL~~~---G~~v~vISl 267 (476)
++.|.|++||||||+ ++.+..++..+ +.++.+++-
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 566899999999955 56677776432 446666654
No 296
>PLN02674 adenylate kinase
Probab=95.81 E-value=0.0077 Score=60.15 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=32.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
+..|.|.|++||||||+|+.|+..+ .+..|+++|....
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~-----~~~his~GdllR~ 68 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRA 68 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc-----CCcEEchhHHHHH
Confidence 4567799999999999999999887 4678999998853
No 297
>PRK13695 putative NTPase; Provisional
Probab=95.80 E-value=0.012 Score=54.43 Aligned_cols=30 Identities=40% Similarity=0.661 Sum_probs=25.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCe
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKS 262 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v 262 (476)
.|+|.|++|||||||++.|...+...|..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 589999999999999999888776666553
No 298
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.80 E-value=0.0088 Score=58.86 Aligned_cols=25 Identities=32% Similarity=0.699 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 40 e~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccc
Confidence 4899999999999999999998764
No 299
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.80 E-value=0.0057 Score=58.19 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999987764
No 300
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.80 E-value=0.0078 Score=59.61 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999998875
No 301
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.80 E-value=0.0064 Score=58.63 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4899999999999999999998874
No 302
>PF13173 AAA_14: AAA domain
Probab=95.79 E-value=0.013 Score=51.69 Aligned_cols=40 Identities=30% Similarity=0.227 Sum_probs=30.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.++.|.|+-||||||+++.+...+. ...++..++.|+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRD 42 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHH
Confidence 4788999999999999988776653 224667777777654
No 303
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=95.78 E-value=0.019 Score=62.28 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-.|+|.|++|||||||.+.|..++..
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl~~~ 384 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRFYEP 384 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC
Confidence 37999999999999999999988753
No 304
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.78 E-value=0.0068 Score=58.24 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccc
Confidence 4899999999999999999998875
No 305
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=95.78 E-value=0.014 Score=57.89 Aligned_cols=38 Identities=34% Similarity=0.425 Sum_probs=35.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
+|.++|..|+||||+|..+...+.+.|.+|.+|++|--
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 67789999999999999999999989999999999974
No 306
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.77 E-value=0.011 Score=59.47 Aligned_cols=51 Identities=22% Similarity=0.121 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLRE 282 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~ 282 (476)
-|.||.||||||||||-+.|..+++...-.+.+...|=--....++.++++
T Consensus 35 ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 35 EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 489999999999999999999888643223333333322234556656553
No 307
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.77 E-value=0.0063 Score=57.82 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4899999999999999999998764
No 308
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.77 E-value=0.012 Score=60.11 Aligned_cols=37 Identities=32% Similarity=0.267 Sum_probs=26.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.|.|+|++||||||++++|...+......-.++++.|
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd 170 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIED 170 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECC
Confidence 4669999999999999999888754322233455555
No 309
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.77 E-value=0.0088 Score=58.21 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 28 QVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 3899999999999999999998774
No 310
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.76 E-value=0.0085 Score=57.97 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999998764
No 311
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.75 E-value=0.0089 Score=54.60 Aligned_cols=25 Identities=28% Similarity=0.178 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
.+|.+.|+.|+|||||++.+...|.
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4899999999999999999998874
No 312
>PRK10908 cell division protein FtsE; Provisional
Probab=95.75 E-value=0.0083 Score=57.37 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999987764
No 313
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.75 E-value=0.025 Score=51.53 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=30.5
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCC
Q 044604 226 KIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRK 261 (476)
Q Consensus 226 ~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~ 261 (476)
..+.+|+|+..-|++|+|||.+++.|++.|=..|.+
T Consensus 48 ~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~ 83 (127)
T PF06309_consen 48 PNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMK 83 (127)
T ss_pred CCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccC
Confidence 357889999999999999999999999886555543
No 314
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.74 E-value=0.0089 Score=56.51 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-+++|.|++|||||||.+.|..++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4899999999999999999987764
No 315
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.74 E-value=0.0083 Score=55.47 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=23.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~ 54 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC
Confidence 38999999999999999999987743
No 316
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.73 E-value=0.0081 Score=60.23 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 34 KYYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3899999999999999999998764
No 317
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.73 E-value=0.0081 Score=58.56 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 32 EIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4899999999999999999998764
No 318
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.73 E-value=0.014 Score=61.68 Aligned_cols=37 Identities=22% Similarity=0.171 Sum_probs=26.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.|.|+|++||||||+.+.|...+........+++++|
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEd 187 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYED 187 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 5779999999999999988877754322233455553
No 319
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.73 E-value=0.0066 Score=66.26 Aligned_cols=48 Identities=27% Similarity=0.374 Sum_probs=34.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREA 283 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~ 283 (476)
.+||.||||||||||++.|..... +..-.|-+|+.-+..-+++++++.
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~e~lG~h 411 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDREQLGRH 411 (580)
T ss_pred eEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCHHHhccc
Confidence 799999999999999999887653 334456777666554455555443
No 320
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.73 E-value=0.0066 Score=58.02 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~~~~ 60 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYANYLP 60 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 38999999999999999999988753
No 321
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.72 E-value=0.014 Score=57.62 Aligned_cols=39 Identities=18% Similarity=0.079 Sum_probs=34.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH-cCCCeEEEecccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV-TGRKSATISIDDF 270 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~-~G~~v~vISlDDF 270 (476)
.+|+|+|--|+||||+|..|...|.+ .|.+|.+|=+|-=
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq 42 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPK 42 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcC
Confidence 48889999999999999999999986 5999999977743
No 322
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.72 E-value=0.0088 Score=55.46 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 4899999999999999999988764
No 323
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.72 E-value=0.0061 Score=60.12 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFVPY 53 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48999999999999999999988753
No 324
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.72 E-value=0.016 Score=64.91 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
.|||.|++|||||||++.|..++..
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl~~p 517 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQP 517 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 7999999999999999999887753
No 325
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.72 E-value=0.0067 Score=58.89 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3899999999999999999988764
No 326
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.72 E-value=0.0063 Score=58.89 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999998775
No 327
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.72 E-value=0.0084 Score=58.55 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 27 EKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999988764
No 328
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.71 E-value=0.0087 Score=60.35 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=23.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-+++|.||.|||||||-+.|..+|+.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCC
Confidence 48999999999999999999999863
No 329
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.71 E-value=0.0077 Score=57.99 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC
Confidence 4899999999999999999988764
No 330
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.71 E-value=0.009 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-+++|.|++|||||||.+.|..++.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4899999999999999999988764
No 331
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.71 E-value=0.0084 Score=59.56 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999988764
No 332
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.71 E-value=0.0065 Score=59.13 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 30 TITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 4899999999999999999998764
No 333
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.70 E-value=0.013 Score=54.91 Aligned_cols=38 Identities=29% Similarity=0.297 Sum_probs=30.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHH
Q 044604 238 APQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLR 281 (476)
Q Consensus 238 G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la 281 (476)
|.+||||||++..|+..| .+.-|-.|||+-+.. .++.+
T Consensus 2 GVsG~GKStvg~~lA~~l-----g~~fidGDdlHp~aN-i~KM~ 39 (161)
T COG3265 2 GVSGSGKSTVGSALAERL-----GAKFIDGDDLHPPAN-IEKMS 39 (161)
T ss_pred CCCccCHHHHHHHHHHHc-----CCceecccccCCHHH-HHHHh
Confidence 889999999999999998 367889999986544 44433
No 334
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.70 E-value=0.0065 Score=58.83 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999998774
No 335
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.70 E-value=0.0079 Score=62.02 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=23.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||++.|..++.
T Consensus 43 e~~~ivG~sGsGKSTL~~~l~Gl~~ 67 (330)
T PRK09473 43 ETLGIVGESGSGKSQTAFALMGLLA 67 (330)
T ss_pred CEEEEECCCCchHHHHHHHHHcCCC
Confidence 3899999999999999999998874
No 336
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.69 E-value=0.0067 Score=57.74 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFIEP 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 48999999999999999999988753
No 337
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.69 E-value=0.0097 Score=51.63 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+.|++.|++|||||||...|.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~ 24 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV 24 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999998875
No 338
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.69 E-value=0.0069 Score=56.37 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=23.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~ 51 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48999999999999999999887643
No 339
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.69 E-value=0.0083 Score=58.52 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 33 QVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4899999999999999999998753
No 340
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.69 E-value=0.0083 Score=55.93 Aligned_cols=35 Identities=34% Similarity=0.312 Sum_probs=26.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
-++||.|++|||||||.+.|..++.. ..--|..|+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g 61 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRPP---ASGEITLDG 61 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECC
Confidence 37999999999999999999988753 223344555
No 341
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.69 E-value=0.02 Score=55.37 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=33.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
.+.-++.|.|++||||||||..+....-+.|.+|..++++.-
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 345689999999999999998876543345889999999753
No 342
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.0088 Score=59.39 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999988774
No 343
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.008 Score=57.53 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=22.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeE
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSA 263 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~ 263 (476)
.|+|+|.+|+||||+|+.|. .| |.+++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l---g~~~i 28 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL---GYKVI 28 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh---CCcee
Confidence 69999999999999999998 54 55543
No 344
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=95.68 E-value=0.012 Score=58.29 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=34.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
+-+.|.||.||||||+|..+.......|+.+.+|.+|
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLD 40 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLD 40 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecC
Confidence 4567899999999999999999998889999999999
No 345
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.68 E-value=0.011 Score=59.22 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=25.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
+|.|+|++||||||+.+.+...+...+. .+++++|
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~--~iitiEd 116 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEK--NIITVED 116 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCC--eEEEECC
Confidence 7899999999999999877666543233 3445443
No 346
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=95.68 E-value=0.015 Score=56.04 Aligned_cols=39 Identities=33% Similarity=0.339 Sum_probs=34.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+|-++|..|+||||++..+...+.+.|.++.+|.+|---
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~ 39 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAH 39 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCc
Confidence 366899999999999999999999899999999988433
No 347
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=95.68 E-value=0.0093 Score=58.63 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=32.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
.+|+|+|-.|+||||+|..|+..|.+.| +|.+|-+|
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~D 38 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCD 38 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEc
Confidence 4788889999999999999999998889 99999887
No 348
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.67 E-value=0.0078 Score=57.61 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 41 e~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4899999999999999999998874
No 349
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.67 E-value=0.011 Score=50.91 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
..++.|.|++|+||||+++.+...+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 347889999999999999998888754
No 350
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=95.67 E-value=0.02 Score=59.49 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=38.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
++..+|+|.|-.|+||||++..|...|.+.|.+|.+|-.|=.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~ 70 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPK 70 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeec
Confidence 467899999999999999999999999988999999999844
No 351
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=95.67 E-value=0.0087 Score=61.51 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||++.|..++.
T Consensus 34 e~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 34 EIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCC
Confidence 3899999999999999999998874
No 352
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.66 E-value=0.009 Score=58.64 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 39 e~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 39 EVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3899999999999999999998764
No 353
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.66 E-value=0.0079 Score=57.23 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4899999999999999999987764
No 354
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.66 E-value=0.023 Score=63.86 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=33.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc-C------------------CCeEEEeccccccCHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVT-G------------------RKSATISIDDFYLTAEGQAK 279 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~-G------------------~~v~vISlDDFYl~~~er~~ 279 (476)
.|||.|++|||||||++.|..++... | ..+..+.+|.+..+..-++.
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN 567 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILEN 567 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHH
Confidence 79999999999999999998887532 2 13456666766665544433
No 355
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=95.66 E-value=0.019 Score=52.07 Aligned_cols=37 Identities=30% Similarity=0.195 Sum_probs=32.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
.-.++-.|+||||+|..|...|.+.|.+|.+|-+|-.
T Consensus 3 ~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~ 39 (179)
T cd02036 3 VVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLG 39 (179)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3356789999999999999999988999999988754
No 356
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=95.65 E-value=0.015 Score=55.16 Aligned_cols=41 Identities=27% Similarity=0.286 Sum_probs=35.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
-+|-|.|-|||||||+|-+|.+.|-+.|.-+.++-.|+.-.
T Consensus 32 cviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRh 72 (207)
T KOG0635|consen 32 CVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRH 72 (207)
T ss_pred cEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccc
Confidence 58999999999999999999999988888777777776543
No 357
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.65 E-value=0.014 Score=59.73 Aligned_cols=43 Identities=21% Similarity=0.132 Sum_probs=37.3
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 226 KIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 226 ~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
+...+|.+|-+.|-.|||||||+..|...+.+.+-...+|.+|
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLD 56 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLD 56 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCC
Confidence 3456789999999999999999999999998776667888888
No 358
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.64 E-value=0.0085 Score=58.44 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999998764
No 359
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.64 E-value=0.018 Score=56.91 Aligned_cols=31 Identities=32% Similarity=0.339 Sum_probs=25.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTG 259 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G 259 (476)
..+.-|.+.||+|+||||+|+.+...+...|
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3445677999999999999999999886544
No 360
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.0078 Score=57.62 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3799999999999999999998774
No 361
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.64 E-value=0.0084 Score=64.71 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=34.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHc-CC-----------------CeEEEeccccccCHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVT-GR-----------------KSATISIDDFYLTAEGQAK 279 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~-G~-----------------~v~vISlDDFYl~~~er~~ 279 (476)
-.|+|.|++|||||||++.|..++... |. .+..+++|.|..+..-++.
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eN 427 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDN 427 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHH
Confidence 379999999999999999998777542 11 3456666766665544443
No 362
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.63 E-value=0.018 Score=57.39 Aligned_cols=39 Identities=10% Similarity=0.185 Sum_probs=31.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
+..++.|+|++|+||||||..+.......|.+|..++++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 456899999999999999987765444458899999987
No 363
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.63 E-value=0.0085 Score=59.38 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 28 PVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4899999999999999999988774
No 364
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.63 E-value=0.0097 Score=59.32 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3899999999999999999998774
No 365
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.63 E-value=0.018 Score=55.24 Aligned_cols=40 Identities=15% Similarity=0.332 Sum_probs=30.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
+.-++.|.|++|+|||||+..+....-..|.++..++.+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 3458999999999999999876543323477888888754
No 366
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.63 E-value=0.0098 Score=59.03 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 36 EYVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3899999999999999999998864
No 367
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.62 E-value=0.0071 Score=57.29 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=23.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~~p 53 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLARP 53 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48999999999999999999887753
No 368
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.0088 Score=58.79 Aligned_cols=26 Identities=35% Similarity=0.253 Sum_probs=23.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-.+|+|+|+-|+||||||+.|+..|+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 35899999999999999999999985
No 369
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.62 E-value=0.0079 Score=58.03 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=23.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~~~~ 55 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERFYDP 55 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCC
Confidence 48999999999999999999988753
No 370
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.62 E-value=0.0089 Score=57.64 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
-++||.|++|||||||.+.|..++
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999998774
No 371
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.62 E-value=0.012 Score=57.81 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 34 KVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4899999999999999999998765
No 372
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.62 E-value=0.018 Score=55.39 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=32.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCCeEEEeccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVT-GRKSATISIDD 269 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~-G~~v~vISlDD 269 (476)
--++.|+|++|+|||||+..+...+... |.+|..+|++.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 3588899999999999998776555444 88999999887
No 373
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=95.62 E-value=0.0092 Score=61.44 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||++.|..++.
T Consensus 42 e~~~IvG~sGsGKSTLl~~l~gl~~ 66 (327)
T PRK11308 42 KTLAVVGESGCGKSTLARLLTMIET 66 (327)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC
Confidence 3899999999999999999988774
No 374
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.61 E-value=0.0075 Score=59.18 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4899999999999999999998874
No 375
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.61 E-value=0.0095 Score=59.64 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=23.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 34 e~~~I~G~nGaGKSTLl~~l~G~~~p 59 (282)
T PRK13640 34 SWTALIGHNGSGKSTISKLINGLLLP 59 (282)
T ss_pred CEEEEECCCCCcHHHHHHHHhcccCC
Confidence 48999999999999999999988743
No 376
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.61 E-value=0.019 Score=59.62 Aligned_cols=41 Identities=29% Similarity=0.302 Sum_probs=37.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.+|.++|-.|+||||+|.+++..+.+.|.++.+||+|-=+.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 58999999999999999999999988898899999997664
No 377
>PLN02459 probable adenylate kinase
Probab=95.60 E-value=0.012 Score=59.45 Aligned_cols=39 Identities=26% Similarity=0.169 Sum_probs=32.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
+|+.|.|.|++||||||+|..|+..+ ....|++.+.+..
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~-----~~~~is~gdllR~ 66 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLL-----GVPHIATGDLVRE 66 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHh-----CCcEEeCcHHHHH
Confidence 45668889999999999999999887 4678999988753
No 378
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.60 E-value=0.017 Score=54.32 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=23.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCC
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRK 261 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~ 261 (476)
|.|+|++|+||||+.+.+...|+..|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~ 29 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLP 29 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGG
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCc
Confidence 7899999999999999999998765544
No 379
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.60 E-value=0.0074 Score=58.20 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~~ 51 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAGFLTP 51 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48999999999999999999887653
No 380
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.60 E-value=0.0096 Score=59.19 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~i~Gl~~ 58 (280)
T PRK13649 34 SYTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999988764
No 381
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.59 E-value=0.0074 Score=58.87 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 31 e~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 31 GVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 3899999999999999999998864
No 382
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=95.59 E-value=0.0094 Score=58.88 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999998764
No 383
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.0099 Score=54.95 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-+++|.|++|||||||.+.|..++.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999987764
No 384
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.0073 Score=57.22 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999988764
No 385
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.58 E-value=0.0096 Score=56.31 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=18.6
Q ss_pred EEEEEeCCCCCcHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFAL 251 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L 251 (476)
-+++|.|++|||||||.+.+
T Consensus 22 ~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999877
No 386
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.58 E-value=0.0086 Score=58.46 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 31 SVTAIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc
Confidence 3899999999999999999998864
No 387
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.58 E-value=0.0094 Score=59.09 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 34 KITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999998764
No 388
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.57 E-value=0.011 Score=57.98 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 32 DVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999998874
No 389
>PRK06893 DNA replication initiation factor; Validated
Probab=95.56 E-value=0.017 Score=56.34 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=31.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.+.|.|++|+|||+|+.++...+.+.|.++..+++++
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 4779999999999999999988877788888787753
No 390
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.56 E-value=0.01 Score=58.37 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 31 EMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3899999999999999999998764
No 391
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.55 E-value=0.0088 Score=55.22 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=23.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-+++|.|++|||||||.+.|..++..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPW 53 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 38999999999999999999887643
No 392
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.55 E-value=0.011 Score=57.26 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3899999999999999999998764
No 393
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.55 E-value=0.01 Score=59.65 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 33 e~v~i~G~nGsGKSTLl~~l~Gl~~p 58 (288)
T PRK13643 33 SYTALIGHTGSGKSTLLQHLNGLLQP 58 (288)
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCC
Confidence 38999999999999999999987743
No 394
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.54 E-value=0.012 Score=57.17 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14240 30 QVTALIGPSGCGKSTFLRTLNRMND 54 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccc
Confidence 4899999999999999999987653
No 395
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=95.54 E-value=0.018 Score=58.34 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=33.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
|+|+|--|+||||+|..|+..|.+.|.+|.+|-+|
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 88999999999999999999999999999999887
No 396
>CHL00175 minD septum-site determining protein; Validated
Probab=95.54 E-value=0.024 Score=56.28 Aligned_cols=41 Identities=27% Similarity=0.149 Sum_probs=34.7
Q ss_pred CcEEEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 230 PWWYIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 230 ~P~VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
...+|+|+ |-.|+||||+|..|...|.+.|.+|.+|-+|--
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~ 55 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIG 55 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 44577776 589999999999999999988999999988853
No 397
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.54 E-value=0.0071 Score=58.43 Aligned_cols=25 Identities=32% Similarity=0.169 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~~ 56 (237)
T PRK11614 32 EIVTLIGANGAGKTTLLGTLCGDPR 56 (237)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4899999999999999999987764
No 398
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.54 E-value=0.011 Score=57.40 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4899999999999999999998764
No 399
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.53 E-value=0.0083 Score=60.10 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 38 e~~~l~G~nGsGKSTLl~~l~Gl~~p 63 (289)
T PRK13645 38 KVTCVIGTTGSGKSTMIQLTNGLIIS 63 (289)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 38999999999999999999988743
No 400
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.53 E-value=0.01 Score=59.90 Aligned_cols=25 Identities=44% Similarity=0.595 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999998875
No 401
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.53 E-value=0.0083 Score=57.77 Aligned_cols=25 Identities=40% Similarity=0.489 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999998764
No 402
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.53 E-value=0.019 Score=60.29 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-+|+|+|++||||||+.+.|...+..
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 38999999999999999998887753
No 403
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.53 E-value=0.0095 Score=57.32 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC
Confidence 4899999999999999999998874
No 404
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.53 E-value=0.009 Score=58.21 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 31 ELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhhccc
Confidence 4899999999999999999998764
No 405
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.53 E-value=0.0094 Score=56.76 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4899999999999999999987754
No 406
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.53 E-value=0.0074 Score=59.62 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4899999999999999999998764
No 407
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=95.52 E-value=0.096 Score=56.33 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=28.7
Q ss_pred EEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 234 IGFS-APQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 234 IGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
|.|+ ..+||||||++..|.+.|++.|.+|..+-.+
T Consensus 6 i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~G 41 (451)
T PRK01077 6 LVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG 41 (451)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecC
Confidence 3444 5699999999999999999999888877543
No 408
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.52 E-value=0.011 Score=57.00 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999998764
No 409
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=95.51 E-value=0.02 Score=57.98 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=34.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.+|+|.|-.|+||||++..|...|.+.|.+|.+|-+|-
T Consensus 5 ~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 5 RQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 47888899999999999999999999999999998874
No 410
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.51 E-value=0.011 Score=56.42 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999988764
No 411
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.51 E-value=0.017 Score=57.75 Aligned_cols=37 Identities=30% Similarity=0.387 Sum_probs=31.5
Q ss_pred EEEEeCCCCCcHHHHHHH-HHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFA-LDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~-L~~lL~~~G~~v~vISlDD 269 (476)
.|+|+|--||||||+|.. +.+++++.|.+|.+|-.|-
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 699999999999999988 6667766668888888884
No 412
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.51 E-value=0.0099 Score=57.33 Aligned_cols=24 Identities=38% Similarity=0.769 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
.|+|.||||||||||-+.++.+..
T Consensus 31 ~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccC
Confidence 699999999999999999988764
No 413
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.50 E-value=0.0098 Score=54.90 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 38999999999999999999988753
No 414
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=95.50 E-value=0.011 Score=55.21 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=21.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
+|.|.|..||||||+++.|++.+
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 415
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.50 E-value=0.011 Score=59.00 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999998874
No 416
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.49 E-value=0.011 Score=56.87 Aligned_cols=26 Identities=42% Similarity=0.272 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~~~ 39 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLDAP 39 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccC
Confidence 48999999999999999999987753
No 417
>PF05729 NACHT: NACHT domain
Probab=95.49 E-value=0.016 Score=51.28 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=23.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTG 259 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G 259 (476)
++.|.|+.|+||||+++.+...+...+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 678999999999999999998887654
No 418
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.49 E-value=0.0083 Score=59.57 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999998774
No 419
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.48 E-value=0.012 Score=57.58 Aligned_cols=27 Identities=15% Similarity=0.264 Sum_probs=24.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
.|-+++|.|++||||||+.++|..+|.
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 356899999999999999999999884
No 420
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.47 E-value=0.0085 Score=55.14 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-+++|.|++|||||||.+.|..++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999987764
No 421
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.47 E-value=0.011 Score=58.51 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=22.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
-++||.|++|||||||.+.|..++
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 48 AVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 389999999999999999998865
No 422
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.46 E-value=0.011 Score=55.88 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC
Confidence 3899999999999999999988764
No 423
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.46 E-value=0.0096 Score=57.96 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 30 QITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccc
Confidence 4899999999999999999997764
No 424
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.46 E-value=0.011 Score=58.47 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 46 e~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 46 TVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4899999999999999999998874
No 425
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.45 E-value=0.012 Score=55.44 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999988764
No 426
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.45 E-value=0.011 Score=57.40 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 30 QVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4899999999999999999998764
No 427
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.45 E-value=0.012 Score=58.57 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999998764
No 428
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.45 E-value=0.012 Score=55.49 Aligned_cols=24 Identities=29% Similarity=0.164 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
-++||.|++|||||||.+.|..++
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998653
No 429
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.44 E-value=0.012 Score=57.42 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..+..
T Consensus 32 e~~~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 32 EVTAFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4899999999999999999988763
No 430
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.44 E-value=0.012 Score=56.00 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999988764
No 431
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=95.44 E-value=0.012 Score=60.93 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4899999999999999999998774
No 432
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.43 E-value=0.014 Score=64.21 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=31.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
...|.+|.+.|.+||||||+|+.+.... ...+|+.|.+
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~-----g~~~vn~D~l 403 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPA-----GYKHVNADTL 403 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHc-----CCeEECcHHH
Confidence 3568899999999999999998877653 3578899875
No 433
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.43 E-value=0.0095 Score=58.78 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=23.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p 51 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 48999999999999999999988753
No 434
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=95.43 E-value=0.012 Score=56.96 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=22.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+|+|.|.-||||||+++.|+..|.
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~ 24 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLG 24 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999884
No 435
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.43 E-value=0.0084 Score=57.83 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=23.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999998875
No 436
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.43 E-value=0.01 Score=58.06 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 34 SITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccc
Confidence 3899999999999999999998875
No 437
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.42 E-value=0.013 Score=57.75 Aligned_cols=34 Identities=38% Similarity=0.294 Sum_probs=26.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI 265 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI 265 (476)
-.|.|+|+.||||||+.+.|...+...+.++++|
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~i 161 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPEDERIVTI 161 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEE
T ss_pred eEEEEECCCccccchHHHHHhhhccccccceEEe
Confidence 4788999999999999998887776543344444
No 438
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.42 E-value=0.012 Score=59.04 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 34 e~~~i~G~nGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13637 34 EFVGLIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3899999999999999999998774
No 439
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.42 E-value=0.029 Score=63.28 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=23.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-+|+|.|++||||||+++.|..++..
T Consensus 508 e~vaIvG~SGsGKSTLl~lL~gl~~p 533 (711)
T TIGR00958 508 EVVALVGPSGSGKSTVAALLQNLYQP 533 (711)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC
Confidence 37999999999999999999988754
No 440
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.42 E-value=0.012 Score=61.57 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
++.|.||||||||||-+.|+.+..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 678999999999999999998875
No 441
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.41 E-value=0.022 Score=54.65 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=29.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHH-HHHHHcCCCeEEEeccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALD-YLFRVTGRKSATISIDD 269 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~-~lL~~~G~~v~vISlDD 269 (476)
+.-++.|.|++|+|||+||..+. +.+.+.|.+|..++++.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 34589999999999999997655 44444388999998764
No 442
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=95.40 E-value=0.026 Score=55.10 Aligned_cols=37 Identities=27% Similarity=0.201 Sum_probs=32.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS 266 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS 266 (476)
...+|.|-|.=||||||.++.|...|...|.+|.+.-
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~tr 38 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTR 38 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3578999999999999999999999999998776653
No 443
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.40 E-value=0.012 Score=56.93 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 29 ELRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999998764
No 444
>PRK06526 transposase; Provisional
Probab=95.39 E-value=0.01 Score=59.35 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=29.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.-|.|.||+|+|||+||..|...+...|.+|..++..+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~ 136 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQ 136 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHH
Confidence 35789999999999999999877766677765544443
No 445
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.39 E-value=0.012 Score=58.52 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (275)
T PRK13639 29 EMVALLGPNGAGKSTLFLHFNGILK 53 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999988764
No 446
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.39 E-value=0.021 Score=54.37 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=31.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcC------CCeEEEecccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTG------RKSATISIDDF 270 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G------~~v~vISlDDF 270 (476)
.--++.|.|++|+||||||..+.......+ .+|.-|++++=
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence 345899999999999999988876654334 56777777663
No 447
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.39 E-value=0.013 Score=57.24 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYL 254 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~l 254 (476)
-++||.|++|||||||.+.|..+
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 30 SVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 48999999999999999999865
No 448
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.38 E-value=0.012 Score=57.19 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
-++||.|++|||||||.+.|..++
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14239 32 EITALIGPSGSGKSTLLRSINRMN 55 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 489999999999999999998763
No 449
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.37 E-value=0.015 Score=54.86 Aligned_cols=40 Identities=28% Similarity=0.266 Sum_probs=30.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.-+.|.|++|+|||.||.++...+-..|..|..++.++++
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~ 87 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLL 87 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCcee
Confidence 3588999999999999999987776678888777766654
No 450
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.37 E-value=0.0099 Score=56.28 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999987764
No 451
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.37 E-value=0.02 Score=57.28 Aligned_cols=28 Identities=32% Similarity=0.352 Sum_probs=23.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
..|+-+.|.|++|||||||...|-..+.
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 5689999999999999999987766554
No 452
>PF12846 AAA_10: AAA-like domain
Probab=95.36 E-value=0.022 Score=55.24 Aligned_cols=32 Identities=25% Similarity=0.163 Sum_probs=27.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATI 265 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI 265 (476)
+.|.|.+||||||++..+...+-..|..+.++
T Consensus 4 ~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~ 35 (304)
T PF12846_consen 4 TLILGKTGSGKTTLLKNLLEQLIRRGPRVVIF 35 (304)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCCEEEE
Confidence 67999999999999988877766678777777
No 453
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.36 E-value=0.021 Score=59.25 Aligned_cols=37 Identities=30% Similarity=0.300 Sum_probs=25.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
-|.|+|++|||||||.++|...+.......-++++.|
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd 182 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILED 182 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecC
Confidence 4679999999999999998877642212233455554
No 454
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.35 E-value=0.01 Score=58.53 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 29 EVVAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999998864
No 455
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.35 E-value=0.026 Score=51.78 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=31.8
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 235 GFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 235 GIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
-.++-.|+||||+|..|+..+.+.|.+|.+|-.|-.
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q 39 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIY 39 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 355788999999999999999988999999999853
No 456
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.35 E-value=0.015 Score=56.26 Aligned_cols=51 Identities=24% Similarity=0.267 Sum_probs=33.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREA 283 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~ 283 (476)
-|||.|+||||||||-..|+.+=..-+-.|.++-++=+-+..+.+..++.+
T Consensus 38 ~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~ 88 (228)
T COG4181 38 TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRAR 88 (228)
T ss_pred eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhcc
Confidence 699999999999999988775532223345555555444555555555443
No 457
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=95.35 E-value=0.012 Score=64.36 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-.|||.|++||||||+++.|.+.+..
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC
Confidence 47999999999999999999988864
No 458
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.35 E-value=0.012 Score=57.52 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~~ 55 (251)
T PRK14270 31 KITALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC
Confidence 4899999999999999999998764
No 459
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=95.34 E-value=0.032 Score=49.76 Aligned_cols=41 Identities=34% Similarity=0.391 Sum_probs=32.9
Q ss_pred EEEEeC-CCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 233 YIGFSA-PQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 233 VIGIaG-~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
+|+|.| ..|+||||+|..|+..|.+.|.+|.+|.+|-+.-.
T Consensus 2 ~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~ 43 (157)
T PF13614_consen 2 VIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPS 43 (157)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-H
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCC
Confidence 788888 66999999999999999999988999999887753
No 460
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.34 E-value=0.015 Score=56.09 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=23.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|...+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 48999999999999999999888753
No 461
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.33 E-value=0.018 Score=54.15 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=20.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
+|.|.|++||||||+|..+...+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68999999999999999887654
No 462
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.33 E-value=0.018 Score=57.33 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=32.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.+.+.|++|+|||+|+.+|...|...|.+|..++..++.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 467899999999999999999887778888877665543
No 463
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.33 E-value=0.012 Score=56.11 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~~ 52 (218)
T cd03290 28 QLTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 4899999999999999999998764
No 464
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=95.32 E-value=0.013 Score=60.54 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||++.|..++.
T Consensus 48 e~~~lvG~sGsGKSTLlk~i~Gl~~ 72 (331)
T PRK15079 48 ETLGVVGESGCGKSTFARAIIGLVK 72 (331)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Confidence 3899999999999999999988774
No 465
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.32 E-value=0.011 Score=57.78 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 31 QITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC
Confidence 3899999999999999999998875
No 466
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=95.32 E-value=0.025 Score=57.52 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=33.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
+|+|.|--|+||||+|-.|...|.+.|.+|.+|=+|
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~D 37 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCD 37 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEec
Confidence 688889999999999999999999899999999887
No 467
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.31 E-value=0.025 Score=53.20 Aligned_cols=40 Identities=30% Similarity=0.361 Sum_probs=28.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH-HcCCCeEEEeccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR-VTGRKSATISIDDFY 271 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~-~~G~~v~vISlDDFY 271 (476)
..+-++||+|+|||.+|+.|.+.|. ........+-+-.|-
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~ 44 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYS 44 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccc
Confidence 4788999999999999999999996 222244444444443
No 468
>PRK05973 replicative DNA helicase; Provisional
Probab=95.31 E-value=0.025 Score=56.31 Aligned_cols=39 Identities=23% Similarity=0.228 Sum_probs=30.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
--++-|+|++|+||||||-.+.......|.+|..++++.
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 347889999999999999776654444588888887654
No 469
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.31 E-value=0.023 Score=52.86 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=17.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
.+..|.||+|+||||+...+...+
T Consensus 18 ~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 18 GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHHHHh
Confidence 378899999999998765555554
No 470
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.31 E-value=0.014 Score=58.03 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 39 e~~~i~G~nGsGKSTLl~~l~Gl~~ 63 (268)
T PRK10419 39 ETVALLGRSGCGKSTLARLLVGLES 63 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999987764
No 471
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.31 E-value=0.028 Score=54.03 Aligned_cols=37 Identities=30% Similarity=0.426 Sum_probs=32.7
Q ss_pred EEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
+|+|. +-.|+||||+|..|...|...|.+|.+|-+|-
T Consensus 3 iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~ 40 (246)
T TIGR03371 3 VIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDP 40 (246)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 56665 47899999999999999998899999999995
No 472
>CHL00181 cbbX CbbX; Provisional
Probab=95.31 E-value=0.024 Score=57.57 Aligned_cols=42 Identities=29% Similarity=0.433 Sum_probs=31.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCC----CeEEEecccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGR----KSATISIDDF 270 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~----~v~vISlDDF 270 (476)
..++.|-+.|++|+||||+|+.+...+...|. .+..++.+++
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 34566889999999999999999998876543 2445555544
No 473
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.31 E-value=0.013 Score=57.17 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
-++||.|++|||||||.+.|..++
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 33 RVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 489999999999999999998765
No 474
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=95.30 E-value=0.015 Score=55.61 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|...+.
T Consensus 32 ~~~~I~G~nGsGKStLl~~l~G~~~ 56 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLTLIGGLRS 56 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999987653
No 475
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.30 E-value=0.012 Score=58.21 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 47 e~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 47 KITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC
Confidence 3899999999999999999998764
No 476
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.29 E-value=0.014 Score=56.94 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
-++||.|++|||||||.+.|..++
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 32 EITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 489999999999999999998765
No 477
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.29 E-value=0.013 Score=57.11 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYL 254 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~l 254 (476)
-++||.|++|||||||.+.|..+
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 34 EIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHcCC
Confidence 48999999999999999999875
No 478
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=95.28 E-value=0.012 Score=57.59 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 28 SLTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4899999999999999999988764
No 479
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=95.28 E-value=0.014 Score=60.71 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..+++.
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~gl~~p 57 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNLLERP 57 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 48999999999999999999887753
No 480
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.28 E-value=0.013 Score=62.22 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=23.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-...|+|.|++|||||||++.|...++
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g 244 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFN 244 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998863
No 481
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.27 E-value=0.015 Score=60.72 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-+++|.|++|||||||.+.|..++.
T Consensus 33 e~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCC
Confidence 3899999999999999999998775
No 482
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.27 E-value=0.015 Score=58.27 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 34 e~~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 34 EWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3899999999999999999998775
No 483
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=95.27 E-value=0.015 Score=57.54 Aligned_cols=25 Identities=32% Similarity=0.584 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 37 e~~~i~G~nGsGKSTLl~~l~Gl~~ 61 (264)
T PRK14243 37 QITAFIGPSGCGKSTILRCFNRLND 61 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4899999999999999999998764
No 484
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.25 E-value=0.024 Score=58.64 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=25.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.|.|+|++|||||||.++|...+........+++++|
T Consensus 150 ~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd 186 (319)
T PRK13894 150 NILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIED 186 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcC
Confidence 5889999999999999988765432222334455554
No 485
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.24 E-value=0.013 Score=55.31 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 48999999999999999999887753
No 486
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.24 E-value=0.011 Score=58.41 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~~p 56 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLVAP 56 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48999999999999999999987753
No 487
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.23 E-value=0.015 Score=56.70 Aligned_cols=26 Identities=31% Similarity=0.212 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+-++.|.|++|+||||+++.+...+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 34688999999999999999988775
No 488
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.23 E-value=0.014 Score=57.74 Aligned_cols=25 Identities=36% Similarity=0.699 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~G~~~ 58 (265)
T PRK10253 34 HFTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3899999999999999999988764
No 489
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.23 E-value=0.015 Score=58.44 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (290)
T PRK13634 34 SYVAIIGHTGSGKSTLLQHLNGLLQ 58 (290)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3899999999999999999988764
No 490
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.017 Score=52.34 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-+++|.|++|||||||.+.|..++.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999987764
No 491
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.22 E-value=0.015 Score=60.80 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
..|.|+|++|||||||.++|...+.
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccC
Confidence 3689999999999999999887764
No 492
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.22 E-value=0.015 Score=58.33 Aligned_cols=37 Identities=27% Similarity=0.475 Sum_probs=28.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
-++||.|++|||||||.+.|..++.. ..-.|..|+..
T Consensus 34 e~~~iiG~NGaGKSTLl~~l~Gl~~p---~~G~i~~~g~~ 70 (287)
T PRK13641 34 SFVALVGHTGSGKSTLMQHFNALLKP---SSGTITIAGYH 70 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEE
Confidence 38999999999999999999887643 23335555543
No 493
>PF13479 AAA_24: AAA domain
Probab=95.21 E-value=0.022 Score=54.90 Aligned_cols=34 Identities=35% Similarity=0.282 Sum_probs=28.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
++++.|.|-|++|+||||||..+ .++.+|.+|+=
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g 34 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASL--------PKPLFIDTENG 34 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCC
Confidence 35789999999999999999877 46788888754
No 494
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.21 E-value=0.012 Score=56.35 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999998774
No 495
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.20 E-value=0.015 Score=57.15 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 39 e~~~i~G~nGsGKSTLl~~i~Gl~~ 63 (258)
T PRK14268 39 SVTALIGPSGCGKSTFIRCLNRMND 63 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999987764
No 496
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.19 E-value=0.012 Score=54.51 Aligned_cols=42 Identities=33% Similarity=0.203 Sum_probs=27.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA 274 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~ 274 (476)
-|.+.|++|||||||+++|...-......=.+...|++--++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~~~~IDTP 44 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYYDNTIDTP 44 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCccceeEecccEEECC
Confidence 377899999999999998875432222222445556665443
No 497
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.19 E-value=0.012 Score=57.61 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (255)
T PRK11231 29 KITALIGPNGCGKSTLLKCFARLLT 53 (255)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4899999999999999999998764
No 498
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.19 E-value=0.013 Score=60.28 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 53 e~~~I~G~nGsGKSTLl~~L~Gl~~p 78 (320)
T PRK13631 53 KIYFIIGNSGSGKSTLVTHFNGLIKS 78 (320)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 38999999999999999999988753
No 499
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=95.18 E-value=0.016 Score=60.22 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl~~ 49 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGLTR 49 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999998764
No 500
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.18 E-value=0.014 Score=55.14 Aligned_cols=37 Identities=27% Similarity=0.157 Sum_probs=28.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH--HHcCCCeEEEeccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF--RVTGRKSATISIDDFY 271 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL--~~~G~~v~vISlDDFY 271 (476)
-++||.|++|||||||.+.|..++ .. ..--|..|+--
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~~~g~~ 74 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVLINGRP 74 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEe
Confidence 489999999999999999998876 43 22335556543
Done!