Query 044604
Match_columns 476
No_of_seqs 290 out of 2045
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 08:16:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1odf_A YGR205W, hypothetical 3 100.0 8.1E-40 2.8E-44 325.0 21.6 238 228-475 28-281 (290)
2 3tqc_A Pantothenate kinase; bi 100.0 2.5E-38 8.4E-43 319.7 11.5 274 155-475 12-313 (321)
3 3aez_A Pantothenate kinase; tr 100.0 1.9E-29 6.5E-34 252.9 12.2 267 155-475 6-304 (312)
4 1sq5_A Pantothenate kinase; P- 99.9 2E-27 6.9E-32 236.0 16.9 269 156-475 1-301 (308)
5 2ga8_A Hypothetical 39.9 kDa p 99.9 1.4E-23 4.8E-28 215.1 9.4 169 261-474 155-355 (359)
6 1a7j_A Phosphoribulokinase; tr 99.8 2.5E-21 8.7E-26 191.6 10.7 188 230-453 4-200 (290)
7 3c8u_A Fructokinase; YP_612366 99.8 1.3E-19 4.4E-24 168.7 14.6 178 229-452 20-198 (208)
8 1uj2_A Uridine-cytidine kinase 99.8 8.8E-19 3E-23 167.8 15.2 178 228-453 19-204 (252)
9 1rz3_A Hypothetical protein rb 99.7 3.8E-18 1.3E-22 158.1 3.8 167 229-451 20-187 (201)
10 3asz_A Uridine kinase; cytidin 99.6 4.8E-15 1.6E-19 136.5 14.3 184 229-471 4-188 (211)
11 2jeo_A Uridine-cytidine kinase 99.6 3.9E-14 1.3E-18 135.0 16.5 176 229-453 23-206 (245)
12 2qt1_A Nicotinamide riboside k 99.2 1.5E-12 5.2E-17 119.9 2.1 158 229-452 19-177 (207)
13 2f6r_A COA synthase, bifunctio 98.9 1.8E-10 6E-15 112.9 1.0 38 228-271 72-109 (281)
14 3d3q_A TRNA delta(2)-isopenten 98.9 1.6E-10 5.6E-15 117.7 -0.5 151 231-449 7-162 (340)
15 2grj_A Dephospho-COA kinase; T 98.6 1.1E-08 3.8E-13 95.6 1.8 110 229-361 10-122 (192)
16 1tev_A UMP-CMP kinase; ploop, 98.4 3.9E-06 1.3E-10 74.8 13.7 38 230-272 2-39 (196)
17 1vht_A Dephospho-COA kinase; s 98.3 3.5E-07 1.2E-11 84.6 4.9 37 230-272 3-39 (218)
18 1qf9_A UMP/CMP kinase, protein 98.2 1.6E-05 5.4E-10 70.7 13.7 38 230-272 5-42 (194)
19 1q3t_A Cytidylate kinase; nucl 98.2 2.1E-06 7.2E-11 80.9 8.2 43 226-273 11-53 (236)
20 3r20_A Cytidylate kinase; stru 98.2 5.3E-06 1.8E-10 80.1 11.0 42 229-275 7-48 (233)
21 4i1u_A Dephospho-COA kinase; s 98.0 4.1E-06 1.4E-10 79.9 4.3 155 230-444 8-171 (210)
22 2axn_A 6-phosphofructo-2-kinas 98.0 0.0002 6.9E-09 76.3 17.6 43 228-270 32-74 (520)
23 1kht_A Adenylate kinase; phosp 97.9 5.3E-06 1.8E-10 73.8 4.2 42 231-272 3-44 (192)
24 3t61_A Gluconokinase; PSI-biol 97.9 9E-06 3.1E-10 74.2 4.2 39 230-273 17-55 (202)
25 1nks_A Adenylate kinase; therm 97.9 9.6E-06 3.3E-10 72.1 4.3 40 232-271 2-41 (194)
26 1cke_A CK, MSSA, protein (cyti 97.8 9.4E-06 3.2E-10 74.8 4.0 39 231-274 5-43 (227)
27 1uf9_A TT1252 protein; P-loop, 97.8 6.8E-06 2.3E-10 74.1 3.0 39 229-273 6-44 (203)
28 1qhx_A CPT, protein (chloramph 97.8 9.7E-06 3.3E-10 71.9 3.7 38 231-271 3-40 (178)
29 1xjc_A MOBB protein homolog; s 97.8 2E-05 6.7E-10 72.8 5.6 40 230-269 3-42 (169)
30 2bwj_A Adenylate kinase 5; pho 97.8 1.2E-05 4E-10 72.3 3.4 38 230-272 11-48 (199)
31 1ukz_A Uridylate kinase; trans 97.8 1.4E-05 4.8E-10 72.6 3.8 40 228-272 12-51 (203)
32 3uie_A Adenylyl-sulfate kinase 97.7 2.4E-05 8.4E-10 71.6 5.3 43 229-271 23-65 (200)
33 3kb2_A SPBC2 prophage-derived 97.7 1.9E-05 6.5E-10 69.0 4.3 35 233-272 3-37 (173)
34 3lw7_A Adenylate kinase relate 97.7 1.3E-05 4.5E-10 69.3 3.0 35 232-272 2-36 (179)
35 2yvu_A Probable adenylyl-sulfa 97.7 3E-05 1E-09 69.8 5.5 42 229-270 11-52 (186)
36 3a4m_A L-seryl-tRNA(SEC) kinas 97.7 2.6E-05 9E-10 74.9 5.2 41 230-270 3-43 (260)
37 2c95_A Adenylate kinase 1; tra 97.7 1.7E-05 5.9E-10 71.0 3.6 39 230-273 8-46 (196)
38 3ake_A Cytidylate kinase; CMP 97.7 1.9E-05 6.6E-10 71.3 3.6 37 233-274 4-40 (208)
39 1ly1_A Polynucleotide kinase; 97.7 1.7E-05 5.7E-10 69.9 3.0 36 231-270 2-37 (181)
40 1jjv_A Dephospho-COA kinase; P 97.7 1.3E-05 4.6E-10 73.1 2.5 36 231-272 2-37 (206)
41 2cdn_A Adenylate kinase; phosp 97.7 2.4E-05 8.1E-10 71.3 3.9 42 226-272 15-56 (201)
42 2if2_A Dephospho-COA kinase; a 97.7 1.6E-05 5.6E-10 72.3 2.6 35 232-272 2-36 (204)
43 1nn5_A Similar to deoxythymidy 97.6 4.3E-05 1.5E-09 69.4 5.2 36 230-265 8-43 (215)
44 1knq_A Gluconate kinase; ALFA/ 97.6 5.7E-05 1.9E-09 67.0 5.8 38 230-272 7-44 (175)
45 2iyv_A Shikimate kinase, SK; t 97.6 1.8E-05 6E-10 70.9 2.5 36 232-272 3-38 (184)
46 1aky_A Adenylate kinase; ATP:A 97.6 2.8E-05 9.7E-10 71.9 3.9 39 229-272 2-40 (220)
47 3cm0_A Adenylate kinase; ATP-b 97.6 3.2E-05 1.1E-09 69.0 4.1 38 230-272 3-40 (186)
48 2rhm_A Putative kinase; P-loop 97.6 2.9E-05 1E-09 69.4 3.7 37 230-271 4-40 (193)
49 1kag_A SKI, shikimate kinase I 97.6 2.1E-05 7.3E-10 69.3 2.8 36 231-271 4-39 (173)
50 3kl4_A SRP54, signal recogniti 97.6 0.00011 3.8E-09 77.0 8.7 44 229-272 95-138 (433)
51 4eun_A Thermoresistant glucoki 97.6 6E-05 2.1E-09 69.0 5.7 39 230-273 28-66 (200)
52 2wwf_A Thymidilate kinase, put 97.6 5.2E-05 1.8E-09 68.8 4.9 37 230-266 9-45 (212)
53 3tlx_A Adenylate kinase 2; str 97.6 3.9E-05 1.3E-09 73.0 4.1 39 229-272 27-65 (243)
54 2z0h_A DTMP kinase, thymidylat 97.6 6.7E-05 2.3E-09 67.2 5.1 31 233-263 2-32 (197)
55 2ze6_A Isopentenyl transferase 97.5 5.7E-05 2E-09 72.6 4.9 35 232-271 2-36 (253)
56 3e70_C DPA, signal recognition 97.5 0.00015 5.1E-09 73.1 8.0 48 229-276 127-174 (328)
57 1vma_A Cell division protein F 97.5 9.5E-05 3.3E-09 73.8 6.5 43 229-271 102-144 (306)
58 2pez_A Bifunctional 3'-phospho 97.5 8.2E-05 2.8E-09 66.5 5.2 36 230-265 4-39 (179)
59 3dm5_A SRP54, signal recogniti 97.5 0.0001 3.5E-09 77.5 6.7 43 230-272 99-141 (443)
60 1gtv_A TMK, thymidylate kinase 97.5 2.1E-05 7E-10 71.7 1.2 39 233-271 2-40 (214)
61 3trf_A Shikimate kinase, SK; a 97.5 4.6E-05 1.6E-09 68.1 3.4 36 231-271 5-40 (185)
62 1e6c_A Shikimate kinase; phosp 97.5 4.6E-05 1.6E-09 67.0 3.4 35 232-271 3-37 (173)
63 3exa_A TRNA delta(2)-isopenten 97.5 0.00016 5.3E-09 73.4 7.6 67 231-307 3-80 (322)
64 1m7g_A Adenylylsulfate kinase; 97.5 8E-05 2.7E-09 68.7 4.8 42 229-270 23-65 (211)
65 3vaa_A Shikimate kinase, SK; s 97.5 5.1E-05 1.8E-09 69.4 3.5 36 231-271 25-60 (199)
66 3fb4_A Adenylate kinase; psych 97.5 4.8E-05 1.6E-09 69.8 3.2 36 233-273 2-37 (216)
67 1zp6_A Hypothetical protein AT 97.5 5.4E-05 1.8E-09 67.8 3.5 39 230-271 8-46 (191)
68 2pbr_A DTMP kinase, thymidylat 97.5 0.00011 3.9E-09 65.3 5.2 35 233-269 2-36 (195)
69 1zd8_A GTP:AMP phosphotransfer 97.4 4.5E-05 1.5E-09 71.1 2.7 39 230-273 6-44 (227)
70 2pt5_A Shikimate kinase, SK; a 97.4 6.6E-05 2.3E-09 65.9 3.5 34 233-271 2-35 (168)
71 2px0_A Flagellar biosynthesis 97.4 0.00012 4.2E-09 72.5 5.7 45 230-274 104-149 (296)
72 1zuh_A Shikimate kinase; alpha 97.4 6.9E-05 2.4E-09 66.2 3.5 35 232-271 8-42 (168)
73 1via_A Shikimate kinase; struc 97.4 6.4E-05 2.2E-09 66.9 3.3 35 233-272 6-40 (175)
74 2f1r_A Molybdopterin-guanine d 97.4 7.7E-05 2.6E-09 68.4 3.8 40 232-271 3-42 (171)
75 3iij_A Coilin-interacting nucl 97.4 6.8E-05 2.3E-09 66.9 3.4 38 230-272 10-47 (180)
76 1gvn_B Zeta; postsegregational 97.4 7.2E-05 2.4E-09 73.5 3.8 42 229-273 31-72 (287)
77 1y63_A LMAJ004144AAA protein; 97.4 8.1E-05 2.8E-09 67.4 3.8 37 230-271 9-46 (184)
78 1np6_A Molybdopterin-guanine d 97.4 0.00016 5.5E-09 66.5 5.8 39 231-269 6-44 (174)
79 1rj9_A FTSY, signal recognitio 97.4 0.00014 4.7E-09 72.5 5.7 44 230-273 101-144 (304)
80 2p5t_B PEZT; postsegregational 97.4 8.6E-05 2.9E-09 70.9 4.0 42 228-272 29-70 (253)
81 3dl0_A Adenylate kinase; phosp 97.4 5E-05 1.7E-09 69.8 2.3 36 233-273 2-37 (216)
82 3b9q_A Chloroplast SRP recepto 97.4 0.00017 5.9E-09 71.6 6.2 44 229-272 98-141 (302)
83 2plr_A DTMP kinase, probable t 97.4 0.00014 4.9E-09 65.5 5.2 30 230-259 3-32 (213)
84 3foz_A TRNA delta(2)-isopenten 97.4 0.00065 2.2E-08 68.7 10.4 69 229-307 8-87 (316)
85 3fdi_A Uncharacterized protein 97.3 0.00022 7.6E-09 66.4 6.0 25 231-255 6-30 (201)
86 2h92_A Cytidylate kinase; ross 97.3 8E-05 2.7E-09 68.4 2.7 38 231-273 3-40 (219)
87 1zak_A Adenylate kinase; ATP:A 97.3 7.8E-05 2.7E-09 69.0 2.4 39 230-273 4-42 (222)
88 2og2_A Putative signal recogni 97.3 0.00025 8.5E-09 72.5 6.2 43 229-271 155-197 (359)
89 3eph_A TRNA isopentenyltransfe 97.3 0.0002 7E-09 74.6 5.6 79 231-319 2-92 (409)
90 1zu4_A FTSY; GTPase, signal re 97.3 0.00028 9.5E-09 70.8 6.4 43 229-271 103-145 (320)
91 3be4_A Adenylate kinase; malar 97.3 0.00011 3.9E-09 68.1 3.1 37 231-272 5-41 (217)
92 1ak2_A Adenylate kinase isoenz 97.2 0.00017 5.7E-09 67.7 4.1 39 229-272 14-52 (233)
93 2xxa_A Signal recognition part 97.2 0.00032 1.1E-08 73.3 6.5 45 229-273 98-143 (433)
94 2j41_A Guanylate kinase; GMP, 97.2 0.00011 3.9E-09 66.2 2.7 26 230-255 5-30 (207)
95 3crm_A TRNA delta(2)-isopenten 97.2 0.00025 8.4E-09 71.8 5.1 37 230-271 4-40 (323)
96 3tr0_A Guanylate kinase, GMP k 97.2 0.00019 6.3E-09 64.8 3.8 25 231-255 7-31 (205)
97 2yhs_A FTSY, cell division pro 97.2 0.00033 1.1E-08 74.8 6.3 43 229-271 291-333 (503)
98 4e22_A Cytidylate kinase; P-lo 97.2 0.00016 5.6E-09 69.1 3.5 36 231-271 27-62 (252)
99 3p32_A Probable GTPase RV1496/ 97.2 0.0004 1.4E-08 69.8 6.3 40 229-268 77-116 (355)
100 2j37_W Signal recognition part 97.2 0.00037 1.3E-08 74.3 6.3 43 229-271 99-141 (504)
101 2bdt_A BH3686; alpha-beta prot 97.2 0.00017 5.7E-09 64.9 3.0 36 232-271 3-38 (189)
102 3a00_A Guanylate kinase, GMP k 97.2 0.00013 4.4E-09 66.1 2.3 25 232-256 2-26 (186)
103 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00042 1.4E-08 62.9 5.6 38 232-269 24-61 (235)
104 2v3c_C SRP54, signal recogniti 97.2 0.00017 5.7E-09 75.4 3.3 43 229-271 97-139 (432)
105 3ec2_A DNA replication protein 97.2 0.00024 8.1E-09 63.5 3.9 40 231-270 38-78 (180)
106 2xb4_A Adenylate kinase; ATP-b 97.2 0.00021 7.3E-09 66.8 3.7 35 233-272 2-36 (223)
107 1kgd_A CASK, peripheral plasma 97.1 0.0002 6.8E-09 64.7 3.2 26 231-256 5-30 (180)
108 1yrb_A ATP(GTP)binding protein 97.1 0.00061 2.1E-08 63.9 6.6 40 229-269 12-51 (262)
109 1e4v_A Adenylate kinase; trans 97.1 0.00019 6.4E-09 66.2 2.9 35 233-272 2-36 (214)
110 2v54_A DTMP kinase, thymidylat 97.1 0.00024 8.3E-09 64.0 3.5 26 230-255 3-28 (204)
111 1ltq_A Polynucleotide kinase; 97.1 0.00025 8.7E-09 68.3 3.7 37 231-271 2-38 (301)
112 2qor_A Guanylate kinase; phosp 97.1 0.0002 6.8E-09 65.7 2.7 27 229-255 10-36 (204)
113 2vli_A Antibiotic resistance p 97.1 0.00015 5.1E-09 64.3 1.7 26 230-255 4-29 (183)
114 1ls1_A Signal recognition part 97.1 0.00063 2.2E-08 67.1 6.2 42 230-271 97-138 (295)
115 3tau_A Guanylate kinase, GMP k 97.0 0.00023 8E-09 65.8 2.8 27 230-256 7-33 (208)
116 2kjq_A DNAA-related protein; s 97.0 0.00047 1.6E-08 61.2 4.4 41 232-272 37-77 (149)
117 2ehv_A Hypothetical protein PH 97.0 0.00077 2.6E-08 62.3 5.7 39 231-269 30-69 (251)
118 2jaq_A Deoxyguanosine kinase; 97.0 0.00043 1.5E-08 62.0 3.9 24 233-256 2-25 (205)
119 2ffh_A Protein (FFH); SRP54, s 97.0 0.00074 2.5E-08 70.6 6.1 43 230-273 97-139 (425)
120 1j8m_F SRP54, signal recogniti 97.0 0.00059 2E-08 67.6 5.1 41 231-271 98-138 (297)
121 2bbw_A Adenylate kinase 4, AK4 97.0 0.00042 1.4E-08 65.3 3.9 38 230-272 26-63 (246)
122 3a8t_A Adenylate isopentenyltr 96.9 0.00047 1.6E-08 70.3 4.1 37 230-271 39-75 (339)
123 3bos_A Putative DNA replicatio 96.9 0.00094 3.2E-08 60.7 5.6 41 232-272 53-93 (242)
124 3umf_A Adenylate kinase; rossm 96.9 0.00072 2.5E-08 64.4 4.6 41 227-272 25-65 (217)
125 1znw_A Guanylate kinase, GMP k 96.9 0.00046 1.6E-08 63.5 3.1 26 231-256 20-45 (207)
126 1lvg_A Guanylate kinase, GMP k 96.9 0.00047 1.6E-08 63.4 3.1 25 232-256 5-29 (198)
127 3zvl_A Bifunctional polynucleo 96.9 0.00041 1.4E-08 71.5 2.9 38 228-270 255-292 (416)
128 1m8p_A Sulfate adenylyltransfe 96.8 0.00088 3E-08 72.3 5.3 42 229-270 394-436 (573)
129 2qm8_A GTPase/ATPase; G protei 96.8 0.0014 4.7E-08 65.9 6.3 40 230-269 54-93 (337)
130 2www_A Methylmalonic aciduria 96.8 0.0014 4.7E-08 66.1 6.3 41 230-270 73-113 (349)
131 2p67_A LAO/AO transport system 96.8 0.0012 4.2E-08 66.0 5.9 42 229-270 54-95 (341)
132 4eaq_A DTMP kinase, thymidylat 96.8 0.0013 4.3E-08 62.4 5.6 34 229-263 24-57 (229)
133 2w58_A DNAI, primosome compone 96.8 0.00089 3.1E-08 60.6 4.4 39 232-270 55-93 (202)
134 2i3b_A HCR-ntpase, human cance 96.8 0.00063 2.2E-08 63.1 3.4 35 233-272 3-37 (189)
135 2dr3_A UPF0273 protein PH0284; 96.8 0.0013 4.5E-08 60.5 5.5 38 232-269 24-61 (247)
136 1cr0_A DNA primase/helicase; R 96.8 0.0013 4.3E-08 63.6 5.4 38 232-269 36-74 (296)
137 2cvh_A DNA repair and recombin 96.7 0.0012 4E-08 60.0 4.7 36 231-269 20-55 (220)
138 3lnc_A Guanylate kinase, GMP k 96.7 0.00047 1.6E-08 64.3 2.1 25 231-255 27-52 (231)
139 2gks_A Bifunctional SAT/APS ki 96.7 0.00098 3.4E-08 71.5 4.9 42 229-270 370-411 (546)
140 4edh_A DTMP kinase, thymidylat 96.7 0.0016 5.5E-08 61.4 5.6 36 230-265 5-40 (213)
141 4gp7_A Metallophosphoesterase; 96.7 0.0012 4E-08 59.3 4.2 21 231-251 9-29 (171)
142 3end_A Light-independent proto 96.7 0.0019 6.6E-08 62.7 6.1 41 229-269 39-79 (307)
143 1ye8_A Protein THEP1, hypothet 96.7 0.001 3.5E-08 60.8 3.9 24 233-256 2-25 (178)
144 3lv8_A DTMP kinase, thymidylat 96.7 0.0015 5.1E-08 63.0 5.1 34 229-262 25-58 (236)
145 1z6g_A Guanylate kinase; struc 96.7 0.00066 2.3E-08 63.5 2.5 25 231-255 23-47 (218)
146 2eyu_A Twitching motility prot 96.6 0.0017 5.8E-08 63.0 5.2 27 232-258 26-52 (261)
147 2vp4_A Deoxynucleoside kinase; 96.6 0.001 3.5E-08 62.3 3.6 36 229-268 18-53 (230)
148 4a74_A DNA repair and recombin 96.6 0.0012 4.2E-08 60.1 3.9 26 231-256 25-50 (231)
149 3kjh_A CO dehydrogenase/acetyl 96.6 0.0014 4.6E-08 60.4 4.1 37 233-269 2-38 (254)
150 3nwj_A ATSK2; P loop, shikimat 96.6 0.001 3.5E-08 64.5 3.3 35 232-271 49-83 (250)
151 3ld9_A DTMP kinase, thymidylat 96.6 0.002 6.9E-08 61.6 5.2 37 228-264 18-55 (223)
152 1s96_A Guanylate kinase, GMP k 96.5 0.0011 3.8E-08 62.7 3.2 26 231-256 16-41 (219)
153 3tif_A Uncharacterized ABC tra 96.5 0.0011 3.7E-08 63.3 3.0 35 232-269 32-66 (235)
154 1htw_A HI0065; nucleotide-bind 96.5 0.0014 4.7E-08 59.2 3.3 24 232-255 34-57 (158)
155 3fwy_A Light-independent proto 96.5 0.0032 1.1E-07 62.9 6.1 39 230-268 47-85 (314)
156 1cp2_A CP2, nitrogenase iron p 96.4 0.003 1E-07 59.6 5.4 38 232-269 2-39 (269)
157 3sr0_A Adenylate kinase; phosp 96.4 0.0016 5.4E-08 61.3 3.4 35 233-272 2-36 (206)
158 3hjn_A DTMP kinase, thymidylat 96.4 0.0032 1.1E-07 58.4 5.4 33 233-265 2-34 (197)
159 2pcj_A ABC transporter, lipopr 96.4 0.0013 4.5E-08 62.1 2.7 34 233-269 32-65 (224)
160 1bif_A 6-phosphofructo-2-kinas 96.4 0.0027 9.3E-08 66.1 5.2 41 229-269 37-77 (469)
161 2wsm_A Hydrogenase expression/ 96.4 0.0033 1.1E-07 57.2 5.1 39 230-269 29-67 (221)
162 3gfo_A Cobalt import ATP-bindi 96.3 0.0016 5.4E-08 64.0 3.1 34 233-269 36-69 (275)
163 1x6v_B Bifunctional 3'-phospho 96.3 0.0029 9.9E-08 69.3 5.4 40 229-268 50-89 (630)
164 2onk_A Molybdate/tungstate ABC 96.3 0.0019 6.7E-08 61.9 3.6 25 232-256 25-49 (240)
165 2ocp_A DGK, deoxyguanosine kin 96.3 0.0018 6E-08 60.9 3.1 27 230-256 1-27 (241)
166 3ney_A 55 kDa erythrocyte memb 96.3 0.0023 8E-08 60.2 3.9 27 230-256 18-44 (197)
167 3jvv_A Twitching mobility prot 96.3 0.0031 1.1E-07 64.1 4.8 27 232-258 124-150 (356)
168 3gmt_A Adenylate kinase; ssgci 96.3 0.0019 6.5E-08 62.4 3.0 38 231-273 8-45 (230)
169 4dzz_A Plasmid partitioning pr 96.3 0.0052 1.8E-07 55.2 5.7 36 233-268 3-39 (206)
170 2ff7_A Alpha-hemolysin translo 96.3 0.0019 6.6E-08 62.1 3.0 35 232-269 36-70 (247)
171 3v9p_A DTMP kinase, thymidylat 96.3 0.003 1E-07 60.4 4.4 37 229-265 23-63 (227)
172 1jbk_A CLPB protein; beta barr 96.2 0.0033 1.1E-07 54.3 4.3 26 232-257 44-69 (195)
173 1b0u_A Histidine permease; ABC 96.2 0.002 6.8E-08 62.5 3.1 25 232-256 33-57 (262)
174 2afh_E Nitrogenase iron protei 96.2 0.0046 1.6E-07 59.4 5.6 38 232-269 3-40 (289)
175 3t15_A Ribulose bisphosphate c 96.2 0.003 1E-07 61.7 4.3 42 227-271 32-73 (293)
176 1g6h_A High-affinity branched- 96.2 0.0021 7.1E-08 62.0 3.0 24 233-256 35-58 (257)
177 4g1u_C Hemin import ATP-bindin 96.2 0.0017 5.7E-08 63.3 2.3 25 232-256 38-62 (266)
178 3cr8_A Sulfate adenylyltranfer 96.2 0.0022 7.6E-08 69.0 3.5 41 230-270 368-409 (552)
179 1n0w_A DNA repair protein RAD5 96.2 0.0028 9.5E-08 58.3 3.7 38 232-269 25-68 (243)
180 1l8q_A Chromosomal replication 96.2 0.0035 1.2E-07 61.2 4.5 39 233-271 39-77 (324)
181 1ji0_A ABC transporter; ATP bi 96.2 0.0022 7.6E-08 61.2 3.0 25 232-256 33-57 (240)
182 4tmk_A Protein (thymidylate ki 96.2 0.0045 1.5E-07 58.5 5.1 32 231-262 3-35 (213)
183 4fcw_A Chaperone protein CLPB; 96.2 0.0047 1.6E-07 59.2 5.3 40 232-271 48-87 (311)
184 2olj_A Amino acid ABC transpor 96.2 0.0023 7.9E-08 62.4 3.1 25 232-256 51-75 (263)
185 2ixe_A Antigen peptide transpo 96.1 0.0024 8.1E-08 62.3 3.0 35 232-269 46-80 (271)
186 2r8r_A Sensor protein; KDPD, P 96.1 0.0075 2.6E-07 58.3 6.5 39 231-269 6-44 (228)
187 2pze_A Cystic fibrosis transme 96.1 0.0026 9E-08 60.3 3.1 41 233-273 36-82 (229)
188 3ug7_A Arsenical pump-driving 96.1 0.0074 2.5E-07 60.7 6.5 41 229-269 24-64 (349)
189 1nlf_A Regulatory protein REPA 96.1 0.0057 1.9E-07 58.7 5.3 38 232-269 31-78 (279)
190 2yz2_A Putative ABC transporte 96.1 0.0027 9.2E-08 61.6 3.0 25 232-256 34-58 (266)
191 2ewv_A Twitching motility prot 96.1 0.0045 1.5E-07 63.0 4.8 27 232-258 137-163 (372)
192 1vpl_A ABC transporter, ATP-bi 96.1 0.0028 9.4E-08 61.5 3.1 25 232-256 42-66 (256)
193 3nh6_A ATP-binding cassette SU 96.0 0.0021 7.3E-08 64.2 2.3 25 232-256 81-105 (306)
194 3sop_A Neuronal-specific septi 96.0 0.0034 1.2E-07 61.2 3.6 26 232-257 3-28 (270)
195 2v9p_A Replication protein E1; 96.0 0.0035 1.2E-07 62.7 3.8 24 232-255 127-150 (305)
196 3syl_A Protein CBBX; photosynt 96.0 0.0074 2.5E-07 57.9 5.9 43 229-271 65-111 (309)
197 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.0074 2.5E-07 56.2 5.7 39 230-271 38-76 (262)
198 3k9g_A PF-32 protein; ssgcid, 96.0 0.0064 2.2E-07 57.5 5.3 40 229-269 25-65 (267)
199 1sgw_A Putative ABC transporte 96.0 0.0026 8.8E-08 60.2 2.5 24 233-256 37-60 (214)
200 1lv7_A FTSH; alpha/beta domain 96.0 0.0071 2.4E-07 56.9 5.6 37 231-270 45-81 (257)
201 1mv5_A LMRA, multidrug resista 96.0 0.0019 6.5E-08 61.7 1.6 25 232-256 29-53 (243)
202 2ihy_A ABC transporter, ATP-bi 96.0 0.003 1E-07 62.0 3.1 24 233-256 49-72 (279)
203 2gza_A Type IV secretion syste 96.0 0.0021 7.3E-08 65.0 1.9 34 233-269 177-210 (361)
204 3q9l_A Septum site-determining 96.0 0.0081 2.8E-07 56.0 5.8 40 232-271 3-43 (260)
205 2cbz_A Multidrug resistance-as 95.9 0.0034 1.2E-07 59.9 3.1 41 232-272 32-78 (237)
206 1p9r_A General secretion pathw 95.9 0.0047 1.6E-07 64.2 4.4 34 232-265 168-201 (418)
207 3bfv_A CAPA1, CAPB2, membrane 95.9 0.0086 2.9E-07 58.1 6.0 40 230-269 81-121 (271)
208 3b85_A Phosphate starvation-in 95.9 0.003 1E-07 59.3 2.7 25 233-258 24-48 (208)
209 1g8f_A Sulfate adenylyltransfe 95.9 0.0053 1.8E-07 65.6 4.7 40 230-269 394-435 (511)
210 3cio_A ETK, tyrosine-protein k 95.9 0.0077 2.6E-07 59.3 5.6 40 230-269 103-143 (299)
211 2p65_A Hypothetical protein PF 95.9 0.0042 1.4E-07 53.9 3.2 25 233-257 45-69 (187)
212 1p5z_B DCK, deoxycytidine kina 95.9 0.0017 5.8E-08 61.8 0.7 28 229-256 22-49 (263)
213 2d2e_A SUFC protein; ABC-ATPas 95.9 0.0041 1.4E-07 59.7 3.3 22 233-254 31-52 (250)
214 3h4m_A Proteasome-activating n 95.9 0.0072 2.5E-07 57.4 5.0 39 230-271 50-88 (285)
215 2hf9_A Probable hydrogenase ni 95.9 0.0078 2.7E-07 54.9 5.0 38 230-268 37-74 (226)
216 3fvq_A Fe(3+) IONS import ATP- 95.8 0.0038 1.3E-07 63.9 3.2 25 232-256 31-55 (359)
217 2zr9_A Protein RECA, recombina 95.8 0.0079 2.7E-07 60.8 5.5 39 232-270 62-100 (349)
218 3zq6_A Putative arsenical pump 95.8 0.0087 3E-07 59.3 5.6 39 231-269 14-52 (324)
219 3tui_C Methionine import ATP-b 95.8 0.0044 1.5E-07 63.6 3.6 25 232-256 55-79 (366)
220 2qi9_C Vitamin B12 import ATP- 95.8 0.0035 1.2E-07 60.6 2.5 24 233-256 28-51 (249)
221 1hyq_A MIND, cell division inh 95.8 0.012 4E-07 55.4 6.0 39 232-270 3-42 (263)
222 2qgz_A Helicase loader, putati 95.8 0.0067 2.3E-07 60.0 4.6 39 232-270 153-192 (308)
223 2x8a_A Nuclear valosin-contain 95.8 0.0059 2E-07 59.3 4.1 22 234-255 47-68 (274)
224 1nij_A Hypothetical protein YJ 95.8 0.0043 1.5E-07 61.5 3.1 34 231-266 4-37 (318)
225 3hr8_A Protein RECA; alpha and 95.8 0.0088 3E-07 61.1 5.5 39 231-269 61-99 (356)
226 2zu0_C Probable ATP-dependent 95.8 0.0048 1.6E-07 59.9 3.4 24 232-255 47-70 (267)
227 1ex7_A Guanylate kinase; subst 95.7 0.0054 1.8E-07 57.0 3.5 22 234-255 4-25 (186)
228 1lw7_A Transcriptional regulat 95.7 0.0047 1.6E-07 62.0 3.3 25 232-256 171-195 (365)
229 3hdt_A Putative kinase; struct 95.7 0.0065 2.2E-07 57.9 4.1 26 230-255 13-38 (223)
230 3iqw_A Tail-anchored protein t 95.7 0.0091 3.1E-07 60.1 5.3 38 231-268 16-53 (334)
231 2chg_A Replication factor C sm 95.7 0.006 2E-07 54.0 3.5 26 234-259 41-66 (226)
232 2woo_A ATPase GET3; tail-ancho 95.7 0.01 3.5E-07 59.1 5.6 40 231-270 19-58 (329)
233 3rlf_A Maltose/maltodextrin im 95.7 0.0053 1.8E-07 63.3 3.6 25 232-256 30-54 (381)
234 2ghi_A Transport protein; mult 95.7 0.0048 1.7E-07 59.7 3.1 25 232-256 47-71 (260)
235 1d2n_A N-ethylmaleimide-sensit 95.7 0.017 5.8E-07 54.9 6.8 39 229-270 62-101 (272)
236 1ihu_A Arsenical pump-driving 95.7 0.01 3.5E-07 63.3 5.8 40 230-269 7-46 (589)
237 2yyz_A Sugar ABC transporter, 95.7 0.0056 1.9E-07 62.5 3.5 25 232-256 30-54 (359)
238 1wcv_1 SOJ, segregation protei 95.7 0.0092 3.1E-07 56.5 4.8 39 231-269 6-45 (257)
239 2it1_A 362AA long hypothetical 95.6 0.0059 2E-07 62.4 3.6 25 232-256 30-54 (362)
240 1z47_A CYSA, putative ABC-tran 95.6 0.006 2E-07 62.3 3.5 24 233-256 43-66 (355)
241 1v43_A Sugar-binding transport 95.6 0.0061 2.1E-07 62.5 3.6 25 232-256 38-62 (372)
242 1g29_1 MALK, maltose transport 95.6 0.0061 2.1E-07 62.5 3.5 24 233-256 31-54 (372)
243 1ixz_A ATP-dependent metallopr 95.6 0.0071 2.4E-07 56.8 3.7 23 234-256 52-74 (254)
244 1in4_A RUVB, holliday junction 95.6 0.0061 2.1E-07 60.4 3.4 26 230-255 50-75 (334)
245 3kta_A Chromosome segregation 95.6 0.006 2E-07 54.2 3.0 24 233-256 28-51 (182)
246 2pt7_A CAG-ALFA; ATPase, prote 95.6 0.0032 1.1E-07 63.1 1.3 24 233-256 173-196 (330)
247 2nq2_C Hypothetical ABC transp 95.6 0.006 2.1E-07 58.9 3.1 39 233-271 33-77 (253)
248 3cwq_A Para family chromosome 95.5 0.013 4.6E-07 54.1 5.3 37 233-270 2-39 (209)
249 3d31_A Sulfate/molybdate ABC t 95.5 0.0055 1.9E-07 62.3 2.9 25 232-256 27-51 (348)
250 1u94_A RECA protein, recombina 95.5 0.015 5E-07 59.2 5.8 39 231-269 63-101 (356)
251 2oze_A ORF delta'; para, walke 95.5 0.0099 3.4E-07 57.1 4.4 38 233-270 36-76 (298)
252 1ofh_A ATP-dependent HSL prote 95.5 0.013 4.6E-07 55.6 5.1 38 231-271 50-87 (310)
253 3la6_A Tyrosine-protein kinase 95.4 0.014 4.7E-07 57.4 5.3 41 230-270 91-132 (286)
254 2npi_A Protein CLP1; CLP1-PCF1 95.4 0.0057 2E-07 64.3 2.7 26 233-258 140-165 (460)
255 4hlc_A DTMP kinase, thymidylat 95.4 0.014 4.8E-07 54.5 5.1 33 232-265 3-35 (205)
256 1fnn_A CDC6P, cell division co 95.4 0.045 1.5E-06 53.5 8.9 34 233-266 46-80 (389)
257 1oxx_K GLCV, glucose, ABC tran 95.4 0.0052 1.8E-07 62.5 2.1 25 232-256 32-56 (353)
258 3ea0_A ATPase, para family; al 95.4 0.019 6.6E-07 52.9 5.8 40 231-270 4-45 (245)
259 1njg_A DNA polymerase III subu 95.4 0.011 3.9E-07 52.6 4.1 27 231-257 45-71 (250)
260 3b9p_A CG5977-PA, isoform A; A 95.3 0.013 4.3E-07 56.1 4.6 38 230-270 53-90 (297)
261 3io3_A DEHA2D07832P; chaperone 95.3 0.016 5.3E-07 58.8 5.5 38 231-268 18-57 (348)
262 2qby_A CDC6 homolog 1, cell di 95.3 0.012 3.9E-07 57.3 4.3 38 230-267 44-84 (386)
263 3cf0_A Transitional endoplasmi 95.3 0.013 4.4E-07 57.1 4.7 26 230-255 48-73 (301)
264 1g3q_A MIND ATPase, cell divis 95.3 0.021 7.2E-07 52.5 5.9 39 232-270 3-42 (237)
265 3fkq_A NTRC-like two-domain pr 95.3 0.031 1.1E-06 56.3 7.6 40 229-268 141-181 (373)
266 2qmh_A HPR kinase/phosphorylas 95.3 0.009 3.1E-07 57.0 3.4 36 231-272 34-69 (205)
267 2zts_A Putative uncharacterize 95.3 0.019 6.7E-07 52.6 5.6 37 232-268 31-68 (251)
268 2r2a_A Uncharacterized protein 95.3 0.013 4.5E-07 54.8 4.5 43 230-272 4-52 (199)
269 2pjz_A Hypothetical protein ST 95.3 0.0082 2.8E-07 58.4 3.2 23 233-255 32-54 (263)
270 2oap_1 GSPE-2, type II secreti 95.3 0.005 1.7E-07 65.6 1.8 25 232-256 261-285 (511)
271 1tf7_A KAIC; homohexamer, hexa 95.3 0.015 5E-07 61.5 5.3 37 232-268 282-318 (525)
272 1svm_A Large T antigen; AAA+ f 95.3 0.01 3.4E-07 61.0 3.9 26 230-255 168-193 (377)
273 3ch4_B Pmkase, phosphomevalona 95.3 0.015 5.2E-07 55.2 4.8 39 229-269 9-47 (202)
274 1oix_A RAS-related protein RAB 95.3 0.01 3.5E-07 53.3 3.4 26 229-254 27-52 (191)
275 2z4s_A Chromosomal replication 95.2 0.011 3.9E-07 61.1 4.2 41 231-271 130-172 (440)
276 1byi_A Dethiobiotin synthase; 95.2 0.02 6.8E-07 52.3 5.3 33 233-265 3-36 (224)
277 1dek_A Deoxynucleoside monopho 95.2 0.011 3.8E-07 57.1 3.8 24 232-255 2-25 (241)
278 3n70_A Transport activator; si 95.2 0.011 3.7E-07 51.4 3.3 36 234-270 27-62 (145)
279 2wjg_A FEOB, ferrous iron tran 95.2 0.015 5E-07 51.0 4.2 25 229-253 5-29 (188)
280 2xj4_A MIPZ; replication, cell 95.2 0.023 7.7E-07 54.9 5.8 39 231-269 4-43 (286)
281 3bh0_A DNAB-like replicative h 95.2 0.018 6.3E-07 56.8 5.2 37 232-268 69-105 (315)
282 2woj_A ATPase GET3; tail-ancho 95.1 0.018 6E-07 58.2 5.1 39 231-269 18-58 (354)
283 1w5s_A Origin recognition comp 95.1 0.019 6.4E-07 56.9 5.1 28 230-257 51-78 (412)
284 2ph1_A Nucleotide-binding prot 95.1 0.029 1E-06 53.2 6.3 40 231-270 18-58 (262)
285 1iy2_A ATP-dependent metallopr 95.1 0.011 3.7E-07 56.6 3.1 23 234-256 76-98 (278)
286 2r6a_A DNAB helicase, replicat 95.1 0.023 7.8E-07 58.9 5.8 39 231-269 203-242 (454)
287 2v1u_A Cell division control p 95.0 0.018 6.3E-07 56.0 4.8 29 230-258 43-71 (387)
288 2bbs_A Cystic fibrosis transme 95.0 0.0096 3.3E-07 58.8 2.8 47 232-278 65-117 (290)
289 3b60_A Lipid A export ATP-bind 95.0 0.01 3.4E-07 63.6 3.1 25 232-256 370-394 (582)
290 3b5x_A Lipid A export ATP-bind 95.0 0.011 3.9E-07 63.2 3.4 26 232-257 370-395 (582)
291 2bjv_A PSP operon transcriptio 95.0 0.015 5.2E-07 54.9 3.8 37 234-270 32-68 (265)
292 1pzn_A RAD51, DNA repair and r 94.9 0.015 5E-07 58.7 3.9 26 230-255 130-155 (349)
293 2qby_B CDC6 homolog 3, cell di 94.9 0.022 7.5E-07 55.9 5.0 29 230-258 44-72 (384)
294 2ged_A SR-beta, signal recogni 94.9 0.021 7.1E-07 50.4 4.4 25 229-253 46-70 (193)
295 2f9l_A RAB11B, member RAS onco 94.9 0.017 5.8E-07 51.8 3.7 24 231-254 5-28 (199)
296 1xp8_A RECA protein, recombina 94.9 0.025 8.7E-07 57.7 5.5 39 232-270 75-113 (366)
297 3m6a_A ATP-dependent protease 94.9 0.02 6.8E-07 61.0 4.9 39 230-271 107-145 (543)
298 3gd7_A Fusion complex of cysti 94.8 0.012 4.2E-07 60.7 2.9 25 232-256 48-72 (390)
299 2orw_A Thymidine kinase; TMTK, 94.8 0.026 8.9E-07 51.6 4.8 34 232-265 4-37 (184)
300 4a1f_A DNAB helicase, replicat 94.8 0.025 8.4E-07 57.4 5.1 37 232-268 47-83 (338)
301 2b8t_A Thymidine kinase; deoxy 94.8 0.035 1.2E-06 53.0 5.8 35 231-265 12-46 (223)
302 1z2a_A RAS-related protein RAB 94.8 0.021 7.3E-07 48.5 3.9 24 229-252 3-26 (168)
303 2wji_A Ferrous iron transport 94.7 0.02 6.7E-07 49.8 3.7 22 231-252 3-24 (165)
304 2hxs_A RAB-26, RAS-related pro 94.7 0.025 8.4E-07 48.9 4.2 24 229-252 4-27 (178)
305 3euj_A Chromosome partition pr 94.7 0.017 6E-07 61.3 3.9 26 232-257 30-55 (483)
306 1pui_A ENGB, probable GTP-bind 94.7 0.01 3.5E-07 53.3 1.8 24 230-253 25-48 (210)
307 4b4t_K 26S protease regulatory 94.7 0.034 1.2E-06 58.1 6.0 40 229-271 204-243 (428)
308 2dpy_A FLII, flagellum-specifi 94.6 0.022 7.4E-07 59.5 4.3 34 233-269 159-192 (438)
309 1tf7_A KAIC; homohexamer, hexa 94.6 0.05 1.7E-06 57.4 7.0 37 232-269 40-78 (525)
310 3tmk_A Thymidylate kinase; pho 94.6 0.02 6.9E-07 54.3 3.6 27 231-257 5-31 (216)
311 1z08_A RAS-related protein RAB 94.6 0.022 7.7E-07 48.6 3.6 24 229-252 4-27 (170)
312 3qf4_B Uncharacterized ABC tra 94.6 0.011 3.9E-07 63.5 2.0 25 232-256 382-406 (598)
313 2z43_A DNA repair and recombin 94.6 0.021 7.3E-07 56.4 3.9 39 232-270 108-152 (324)
314 4ag6_A VIRB4 ATPase, type IV s 94.5 0.035 1.2E-06 55.9 5.4 35 233-267 37-71 (392)
315 4a82_A Cystic fibrosis transme 94.5 0.0097 3.3E-07 63.7 1.5 25 232-256 368-392 (578)
316 1kao_A RAP2A; GTP-binding prot 94.5 0.027 9.1E-07 47.6 3.9 23 230-252 2-24 (167)
317 2yl4_A ATP-binding cassette SU 94.5 0.011 3.8E-07 63.4 1.9 25 232-256 371-395 (595)
318 1u8z_A RAS-related protein RAL 94.5 0.029 9.9E-07 47.4 4.1 23 230-252 3-25 (168)
319 1c9k_A COBU, adenosylcobinamid 94.5 0.017 5.8E-07 53.8 2.8 32 233-268 1-32 (180)
320 1sxj_C Activator 1 40 kDa subu 94.5 0.016 5.3E-07 57.1 2.7 23 234-256 49-71 (340)
321 3d8b_A Fidgetin-like protein 1 94.5 0.029 9.8E-07 56.1 4.6 39 230-271 116-154 (357)
322 3ez2_A Plasmid partition prote 94.5 0.047 1.6E-06 55.1 6.3 41 229-269 106-153 (398)
323 1r2q_A RAS-related protein RAB 94.5 0.019 6.7E-07 48.7 2.9 24 229-252 4-27 (170)
324 1xx6_A Thymidine kinase; NESG, 94.5 0.056 1.9E-06 50.2 6.3 36 231-266 8-43 (191)
325 2r62_A Cell division protease 94.5 0.012 4E-07 55.5 1.6 23 234-256 47-69 (268)
326 2obl_A ESCN; ATPase, hydrolase 94.4 0.026 9E-07 57.1 4.3 24 233-256 73-96 (347)
327 3qf4_A ABC transporter, ATP-bi 94.4 0.012 4.2E-07 63.2 2.0 25 232-256 370-394 (587)
328 1ky3_A GTP-binding protein YPT 94.4 0.028 9.6E-07 48.4 3.9 24 229-252 6-29 (182)
329 2ce2_X GTPase HRAS; signaling 94.4 0.025 8.6E-07 47.5 3.5 22 231-252 3-24 (166)
330 2lkc_A Translation initiation 94.4 0.029 1E-06 48.4 4.0 24 229-252 6-29 (178)
331 2nzj_A GTP-binding protein REM 94.4 0.03 1E-06 48.1 3.9 23 230-252 3-25 (175)
332 3eie_A Vacuolar protein sortin 94.4 0.031 1E-06 54.9 4.5 37 230-269 50-86 (322)
333 1v5w_A DMC1, meiotic recombina 94.3 0.03 1E-06 56.0 4.4 42 230-271 121-168 (343)
334 4b4t_L 26S protease subunit RP 94.3 0.046 1.6E-06 57.3 5.9 40 229-271 213-252 (437)
335 2fn4_A P23, RAS-related protei 94.3 0.032 1.1E-06 48.0 4.0 25 229-253 7-31 (181)
336 1xwi_A SKD1 protein; VPS4B, AA 94.3 0.035 1.2E-06 54.9 4.8 41 229-271 43-83 (322)
337 3fgn_A Dethiobiotin synthetase 94.3 0.21 7.2E-06 48.4 10.2 34 232-265 27-61 (251)
338 1sxj_E Activator 1 40 kDa subu 94.3 0.024 8.3E-07 55.3 3.5 25 230-255 36-60 (354)
339 3clv_A RAB5 protein, putative; 94.3 0.036 1.2E-06 48.2 4.3 25 229-253 5-29 (208)
340 4b4t_M 26S protease regulatory 94.2 0.053 1.8E-06 56.8 6.2 40 229-271 213-252 (434)
341 1z0j_A RAB-22, RAS-related pro 94.2 0.028 9.7E-07 47.8 3.4 23 230-252 5-27 (170)
342 3lda_A DNA repair protein RAD5 94.2 0.027 9.3E-07 58.2 3.8 38 232-269 179-222 (400)
343 1c1y_A RAS-related protein RAP 94.2 0.035 1.2E-06 47.1 3.9 22 231-252 3-24 (167)
344 3pg5_A Uncharacterized protein 94.1 0.036 1.2E-06 55.8 4.5 37 233-269 3-40 (361)
345 2q6t_A DNAB replication FORK h 94.1 0.048 1.6E-06 56.3 5.5 38 231-268 200-238 (444)
346 1tq4_A IIGP1, interferon-induc 94.1 0.026 8.7E-07 58.7 3.4 27 230-256 68-94 (413)
347 3hws_A ATP-dependent CLP prote 94.1 0.036 1.2E-06 55.1 4.3 36 230-268 50-85 (363)
348 4dsu_A GTPase KRAS, isoform 2B 94.1 0.033 1.1E-06 48.4 3.6 23 230-252 3-25 (189)
349 3bc1_A RAS-related protein RAB 94.0 0.036 1.2E-06 48.1 3.8 25 229-253 9-33 (195)
350 1upt_A ARL1, ADP-ribosylation 94.0 0.039 1.3E-06 47.1 3.9 24 229-252 5-28 (171)
351 2yv5_A YJEQ protein; hydrolase 94.0 0.027 9.3E-07 55.4 3.3 23 232-255 166-188 (302)
352 3bgw_A DNAB-like replicative h 94.0 0.041 1.4E-06 57.3 4.8 39 231-269 197-235 (444)
353 3ozx_A RNAse L inhibitor; ATP 94.0 0.025 8.6E-07 60.5 3.2 26 232-257 295-320 (538)
354 2erx_A GTP-binding protein DI- 94.0 0.038 1.3E-06 46.9 3.7 22 231-252 3-24 (172)
355 1yqt_A RNAse L inhibitor; ATP- 94.0 0.027 9.2E-07 60.1 3.4 25 232-256 48-72 (538)
356 1qhl_A Protein (cell division 93.9 0.0064 2.2E-07 58.2 -1.4 25 233-257 29-53 (227)
357 1um8_A ATP-dependent CLP prote 93.9 0.044 1.5E-06 54.6 4.7 35 232-269 73-107 (376)
358 3con_A GTPase NRAS; structural 93.9 0.035 1.2E-06 48.8 3.5 25 229-253 19-43 (190)
359 1of1_A Thymidine kinase; trans 93.9 0.032 1.1E-06 57.6 3.7 32 228-259 46-77 (376)
360 1hqc_A RUVB; extended AAA-ATPa 93.9 0.034 1.2E-06 53.4 3.7 37 232-271 39-75 (324)
361 3tw8_B RAS-related protein RAB 93.9 0.035 1.2E-06 47.8 3.3 24 229-252 7-30 (181)
362 3te6_A Regulatory protein SIR3 93.8 0.24 8.2E-06 49.7 9.9 43 230-272 44-91 (318)
363 2qp9_X Vacuolar protein sortin 93.8 0.06 2.1E-06 53.9 5.5 37 231-270 84-120 (355)
364 2a9k_A RAS-related protein RAL 93.8 0.043 1.5E-06 47.4 3.9 24 229-252 16-39 (187)
365 3e1s_A Exodeoxyribonuclease V, 93.8 0.058 2E-06 58.1 5.7 35 232-266 205-239 (574)
366 1sxj_A Activator 1 95 kDa subu 93.8 0.078 2.7E-06 55.8 6.6 37 231-270 77-113 (516)
367 3pfi_A Holliday junction ATP-d 93.8 0.05 1.7E-06 52.9 4.7 36 232-270 56-91 (338)
368 1yqt_A RNAse L inhibitor; ATP- 93.8 0.03 1E-06 59.8 3.4 39 232-270 313-357 (538)
369 1wms_A RAB-9, RAB9, RAS-relate 93.8 0.037 1.3E-06 47.6 3.4 23 230-252 6-28 (177)
370 2zej_A Dardarin, leucine-rich 93.8 0.032 1.1E-06 49.3 3.0 22 232-253 3-24 (184)
371 1ek0_A Protein (GTP-binding pr 93.8 0.039 1.3E-06 46.8 3.4 22 231-252 3-24 (170)
372 2oil_A CATX-8, RAS-related pro 93.7 0.044 1.5E-06 48.4 3.8 26 228-253 22-47 (193)
373 2y8e_A RAB-protein 6, GH09086P 93.7 0.034 1.2E-06 47.7 3.0 24 229-252 12-35 (179)
374 3lxx_A GTPase IMAP family memb 93.7 0.041 1.4E-06 51.1 3.7 24 229-252 27-50 (239)
375 1g16_A RAS-related protein SEC 93.7 0.043 1.5E-06 46.7 3.5 22 231-252 3-24 (170)
376 3pxi_A Negative regulator of g 93.6 0.061 2.1E-06 59.1 5.6 44 229-272 518-562 (758)
377 2gj8_A MNME, tRNA modification 93.6 0.038 1.3E-06 48.6 3.2 24 230-253 3-26 (172)
378 3tqf_A HPR(Ser) kinase; transf 93.6 0.043 1.5E-06 51.5 3.6 22 232-253 17-38 (181)
379 4b4t_H 26S protease regulatory 93.6 0.062 2.1E-06 56.9 5.3 40 229-271 241-280 (467)
380 2efe_B Small GTP-binding prote 93.6 0.045 1.5E-06 47.3 3.6 24 229-252 10-33 (181)
381 4b4t_I 26S protease regulatory 93.6 0.085 2.9E-06 55.5 6.2 40 229-271 214-253 (437)
382 2bov_A RAla, RAS-related prote 93.6 0.055 1.9E-06 47.9 4.1 24 229-252 12-35 (206)
383 3j16_B RLI1P; ribosome recycli 93.5 0.035 1.2E-06 60.4 3.4 36 233-268 380-421 (608)
384 1u0l_A Probable GTPase ENGC; p 93.5 0.035 1.2E-06 54.4 3.1 24 232-255 170-193 (301)
385 3kkq_A RAS-related protein M-R 93.5 0.056 1.9E-06 47.0 4.1 24 229-252 16-39 (183)
386 2dyk_A GTP-binding protein; GT 93.5 0.052 1.8E-06 45.8 3.8 21 233-253 3-23 (161)
387 3ez9_A Para; DNA binding, wing 93.5 0.052 1.8E-06 55.0 4.3 41 229-269 109-156 (403)
388 1moz_A ARL1, ADP-ribosylation 93.4 0.032 1.1E-06 48.5 2.4 24 229-252 16-39 (183)
389 2g6b_A RAS-related protein RAB 93.4 0.053 1.8E-06 46.8 3.8 24 229-252 8-31 (180)
390 1nrj_B SR-beta, signal recogni 93.4 0.048 1.6E-06 49.2 3.6 25 229-253 10-34 (218)
391 2qag_B Septin-6, protein NEDD5 93.4 0.031 1E-06 58.5 2.6 23 232-254 43-65 (427)
392 1fzq_A ADP-ribosylation factor 93.4 0.045 1.6E-06 48.3 3.3 24 229-252 14-37 (181)
393 2ce7_A Cell division protein F 93.4 0.075 2.6E-06 56.2 5.5 38 231-271 49-86 (476)
394 1vg8_A RAS-related protein RAB 93.4 0.056 1.9E-06 48.0 3.9 24 229-252 6-29 (207)
395 1z0f_A RAB14, member RAS oncog 93.4 0.055 1.9E-06 46.4 3.7 25 229-253 13-37 (179)
396 1mh1_A RAC1; GTP-binding, GTPa 93.4 0.055 1.9E-06 46.8 3.7 23 230-252 4-26 (186)
397 2rcn_A Probable GTPase ENGC; Y 93.3 0.042 1.4E-06 56.2 3.4 23 233-255 217-239 (358)
398 2fna_A Conserved hypothetical 93.3 0.079 2.7E-06 50.8 5.1 35 233-270 32-66 (357)
399 1f2t_A RAD50 ABC-ATPase; DNA d 93.3 0.065 2.2E-06 47.3 4.1 25 231-255 23-47 (149)
400 3j16_B RLI1P; ribosome recycli 93.3 0.041 1.4E-06 59.9 3.4 26 232-257 104-129 (608)
401 1m7b_A RND3/RHOE small GTP-bin 93.3 0.053 1.8E-06 47.7 3.5 25 229-253 5-29 (184)
402 1sxj_D Activator 1 41 kDa subu 93.3 0.052 1.8E-06 52.6 3.7 23 234-256 61-83 (353)
403 3bk7_A ABC transporter ATP-bin 93.2 0.042 1.4E-06 59.7 3.4 37 233-269 384-426 (607)
404 2dhr_A FTSH; AAA+ protein, hex 93.2 0.064 2.2E-06 57.0 4.7 35 234-271 67-101 (499)
405 1svi_A GTP-binding protein YSX 93.2 0.044 1.5E-06 48.2 2.9 24 229-252 21-44 (195)
406 1z06_A RAS-related protein RAB 93.2 0.063 2.2E-06 47.3 3.9 25 228-252 17-41 (189)
407 2a5j_A RAS-related protein RAB 93.2 0.062 2.1E-06 47.5 3.9 25 228-252 18-42 (191)
408 3ihw_A Centg3; RAS, centaurin, 93.2 0.072 2.4E-06 47.4 4.3 26 227-252 16-41 (184)
409 2c9o_A RUVB-like 1; hexameric 93.2 0.073 2.5E-06 55.0 5.0 26 231-256 63-88 (456)
410 3vfd_A Spastin; ATPase, microt 93.2 0.066 2.3E-06 53.9 4.5 38 231-271 148-185 (389)
411 1e2k_A Thymidine kinase; trans 93.1 0.041 1.4E-06 55.7 2.9 30 230-259 3-32 (331)
412 3uk6_A RUVB-like 2; hexameric 93.1 0.047 1.6E-06 53.5 3.3 25 232-256 71-95 (368)
413 3tkl_A RAS-related protein RAB 93.1 0.063 2.1E-06 47.1 3.8 24 229-252 14-37 (196)
414 3upu_A ATP-dependent DNA helic 93.1 0.095 3.2E-06 54.2 5.7 33 233-265 47-80 (459)
415 2gf0_A GTP-binding protein DI- 93.1 0.066 2.2E-06 47.1 3.8 25 229-253 6-30 (199)
416 1qvr_A CLPB protein; coiled co 93.1 0.063 2.1E-06 60.0 4.5 43 229-271 585-628 (854)
417 1ypw_A Transitional endoplasmi 93.1 0.069 2.4E-06 59.6 4.9 27 229-255 236-262 (806)
418 1sxj_B Activator 1 37 kDa subu 93.0 0.048 1.6E-06 51.9 3.1 23 234-256 45-67 (323)
419 3bk7_A ABC transporter ATP-bin 93.0 0.044 1.5E-06 59.5 3.2 26 232-257 118-143 (607)
420 1ksh_A ARF-like protein 2; sma 93.0 0.061 2.1E-06 47.0 3.5 24 229-252 16-39 (186)
421 1q57_A DNA primase/helicase; d 93.0 0.06 2.1E-06 56.2 4.1 39 231-269 242-281 (503)
422 3bwd_D RAC-like GTP-binding pr 93.0 0.061 2.1E-06 46.5 3.5 24 229-252 6-29 (182)
423 3u61_B DNA polymerase accessor 93.0 0.066 2.3E-06 51.8 4.1 26 230-255 47-72 (324)
424 4b4t_J 26S protease regulatory 93.0 0.086 2.9E-06 54.9 5.1 40 229-271 180-219 (405)
425 2bme_A RAB4A, RAS-related prot 93.0 0.054 1.9E-06 47.1 3.1 24 229-252 8-31 (186)
426 4f4c_A Multidrug resistance pr 93.0 0.021 7.2E-07 67.1 0.5 67 233-310 1107-1193(1321)
427 3q85_A GTP-binding protein REM 92.9 0.065 2.2E-06 45.7 3.5 21 232-252 3-23 (169)
428 2p5s_A RAS and EF-hand domain 92.9 0.068 2.3E-06 47.7 3.8 25 228-252 25-49 (199)
429 3pqc_A Probable GTP-binding pr 92.9 0.054 1.9E-06 47.2 3.1 23 230-252 22-44 (195)
430 3ozx_A RNAse L inhibitor; ATP 92.9 0.061 2.1E-06 57.5 4.0 29 229-257 23-51 (538)
431 3g5u_A MCG1178, multidrug resi 92.9 0.044 1.5E-06 64.2 3.1 24 233-256 1061-1084(1284)
432 3k1j_A LON protease, ATP-depen 92.9 0.048 1.7E-06 58.6 3.2 25 233-257 62-86 (604)
433 2gf9_A RAS-related protein RAB 92.9 0.072 2.5E-06 46.9 3.8 24 229-252 20-43 (189)
434 1ojl_A Transcriptional regulat 92.8 0.06 2.1E-06 52.8 3.6 38 233-270 27-64 (304)
435 3k53_A Ferrous iron transport 92.8 0.055 1.9E-06 51.7 3.2 23 231-253 3-25 (271)
436 2xtp_A GTPase IMAP family memb 92.8 0.06 2.1E-06 50.6 3.4 24 229-252 20-43 (260)
437 1tue_A Replication protein E1; 92.8 0.048 1.7E-06 52.2 2.8 24 233-256 60-83 (212)
438 1iqp_A RFCS; clamp loader, ext 92.8 0.045 1.5E-06 52.2 2.5 23 234-256 49-71 (327)
439 2fh5_B SR-beta, signal recogni 92.8 0.062 2.1E-06 48.3 3.3 25 229-253 5-29 (214)
440 3t5g_A GTP-binding protein RHE 92.8 0.052 1.8E-06 47.2 2.7 23 230-252 5-27 (181)
441 1ihu_A Arsenical pump-driving 92.8 0.13 4.6E-06 54.7 6.4 39 231-269 327-365 (589)
442 2atv_A RERG, RAS-like estrogen 92.7 0.08 2.7E-06 47.0 3.9 25 229-253 26-50 (196)
443 4bas_A ADP-ribosylation factor 92.7 0.072 2.4E-06 46.9 3.6 25 228-252 14-38 (199)
444 3cbq_A GTP-binding protein REM 92.7 0.058 2E-06 48.6 3.0 24 229-252 21-44 (195)
445 1zd9_A ADP-ribosylation factor 92.7 0.073 2.5E-06 47.1 3.6 24 229-252 20-43 (188)
446 3q72_A GTP-binding protein RAD 92.7 0.056 1.9E-06 46.0 2.7 21 232-252 3-23 (166)
447 1zj6_A ADP-ribosylation factor 92.7 0.072 2.5E-06 46.8 3.5 23 230-252 15-37 (187)
448 1p6x_A Thymidine kinase; P-loo 92.7 0.055 1.9E-06 54.8 3.1 28 230-257 6-33 (334)
449 2zan_A Vacuolar protein sortin 92.7 0.072 2.5E-06 55.1 4.0 39 230-270 166-204 (444)
450 3ice_A Transcription terminati 92.6 0.093 3.2E-06 54.9 4.8 36 233-268 176-213 (422)
451 1m2o_B GTP-binding protein SAR 92.6 0.059 2E-06 48.1 2.9 23 230-252 22-44 (190)
452 1f6b_A SAR1; gtpases, N-termin 92.6 0.06 2E-06 48.5 3.0 23 230-252 24-46 (198)
453 1jr3_A DNA polymerase III subu 92.6 0.078 2.7E-06 51.7 4.0 26 231-256 38-63 (373)
454 2fg5_A RAB-22B, RAS-related pr 92.6 0.066 2.3E-06 47.5 3.2 24 229-252 21-44 (192)
455 3c5c_A RAS-like protein 12; GD 92.6 0.085 2.9E-06 46.8 3.9 25 228-252 18-42 (187)
456 4f4c_A Multidrug resistance pr 92.5 0.047 1.6E-06 64.2 2.7 24 233-256 446-469 (1321)
457 3szr_A Interferon-induced GTP- 92.5 0.044 1.5E-06 59.3 2.3 24 233-256 47-70 (608)
458 1zbd_A Rabphilin-3A; G protein 92.5 0.081 2.8E-06 47.0 3.7 23 230-252 7-29 (203)
459 1r8s_A ADP-ribosylation factor 92.5 0.073 2.5E-06 45.2 3.2 21 233-253 2-22 (164)
460 3igf_A ALL4481 protein; two-do 92.5 0.084 2.9E-06 54.1 4.2 36 232-267 3-38 (374)
461 1g41_A Heat shock protein HSLU 92.5 0.098 3.3E-06 55.0 4.8 37 231-270 50-86 (444)
462 3g5u_A MCG1178, multidrug resi 92.5 0.046 1.6E-06 64.1 2.5 25 232-256 417-441 (1284)
463 3oes_A GTPase rhebl1; small GT 92.5 0.077 2.6E-06 47.4 3.5 24 229-252 22-45 (201)
464 2qnr_A Septin-2, protein NEDD5 92.5 0.052 1.8E-06 53.4 2.5 24 230-253 17-40 (301)
465 2qag_C Septin-7; cell cycle, c 92.4 0.068 2.3E-06 55.6 3.4 26 230-255 30-55 (418)
466 3reg_A RHO-like small GTPase; 92.3 0.084 2.9E-06 46.7 3.5 25 228-252 20-44 (194)
467 1t9h_A YLOQ, probable GTPase E 92.3 0.03 1E-06 56.0 0.6 24 232-255 174-197 (307)
468 2iwr_A Centaurin gamma 1; ANK 92.3 0.083 2.9E-06 45.7 3.4 25 229-253 5-29 (178)
469 2h17_A ADP-ribosylation factor 92.3 0.065 2.2E-06 47.0 2.7 25 228-252 18-42 (181)
470 2b6h_A ADP-ribosylation factor 92.3 0.08 2.7E-06 47.3 3.4 24 229-252 27-50 (192)
471 2i1q_A DNA repair and recombin 92.3 0.074 2.5E-06 52.0 3.4 40 231-270 98-153 (322)
472 3ux8_A Excinuclease ABC, A sub 92.3 0.04 1.4E-06 59.8 1.6 19 233-251 350-368 (670)
473 2j1l_A RHO-related GTP-binding 92.2 0.086 2.9E-06 47.9 3.5 24 229-252 32-55 (214)
474 2chq_A Replication factor C sm 92.2 0.054 1.8E-06 51.5 2.2 23 234-256 41-63 (319)
475 1x3s_A RAS-related protein RAB 92.2 0.085 2.9E-06 46.1 3.4 23 230-252 14-36 (195)
476 3t1o_A Gliding protein MGLA; G 92.2 0.084 2.9E-06 46.0 3.3 27 229-255 12-38 (198)
477 2qu8_A Putative nucleolar GTP- 92.1 0.098 3.4E-06 48.0 3.8 24 229-252 27-50 (228)
478 2il1_A RAB12; G-protein, GDP, 92.1 0.089 3E-06 46.8 3.3 24 229-252 24-47 (192)
479 1ega_A Protein (GTP-binding pr 92.0 0.077 2.6E-06 52.0 3.1 22 231-252 8-29 (301)
480 3cph_A RAS-related protein SEC 92.0 0.11 3.6E-06 46.4 3.7 24 229-252 18-41 (213)
481 2r44_A Uncharacterized protein 91.9 0.1 3.5E-06 50.7 3.9 22 234-255 49-70 (331)
482 1z6t_A APAF-1, apoptotic prote 91.9 0.099 3.4E-06 54.8 4.0 41 230-270 146-190 (591)
483 2h57_A ADP-ribosylation factor 91.9 0.074 2.5E-06 46.9 2.6 24 229-252 19-42 (190)
484 1gwn_A RHO-related GTP-binding 91.8 0.1 3.4E-06 47.5 3.5 25 229-253 26-50 (205)
485 2ew1_A RAS-related protein RAB 91.8 0.095 3.2E-06 47.7 3.3 25 229-253 24-48 (201)
486 3qks_A DNA double-strand break 91.8 0.12 4.2E-06 47.6 4.1 26 231-256 23-48 (203)
487 2a5y_B CED-4; apoptosis; HET: 91.8 0.098 3.4E-06 55.2 3.9 24 230-253 151-174 (549)
488 2cxx_A Probable GTP-binding pr 91.8 0.074 2.5E-06 46.3 2.5 20 233-252 3-22 (190)
489 3qf7_A RAD50; ABC-ATPase, ATPa 91.8 0.1 3.6E-06 52.7 3.9 24 233-256 25-48 (365)
490 3hu3_A Transitional endoplasmi 91.8 0.088 3E-06 55.6 3.4 38 230-270 237-274 (489)
491 3cf2_A TER ATPase, transitiona 91.8 0.16 5.4E-06 57.2 5.6 45 219-266 226-270 (806)
492 2q3h_A RAS homolog gene family 91.8 0.11 3.7E-06 46.1 3.6 24 229-252 18-41 (201)
493 3dz8_A RAS-related protein RAB 91.7 0.071 2.4E-06 47.1 2.3 25 229-253 21-45 (191)
494 3iev_A GTP-binding protein ERA 91.7 0.096 3.3E-06 51.4 3.4 26 227-252 6-31 (308)
495 2o52_A RAS-related protein RAB 91.7 0.089 3E-06 47.2 3.0 24 229-252 23-46 (200)
496 4dhe_A Probable GTP-binding pr 91.7 0.063 2.2E-06 48.5 1.9 24 229-252 27-50 (223)
497 2aka_B Dynamin-1; fusion prote 91.7 0.14 4.9E-06 48.5 4.5 23 230-252 25-47 (299)
498 3lxw_A GTPase IMAP family memb 91.6 0.11 3.7E-06 49.3 3.5 24 229-252 19-42 (247)
499 2hup_A RAS-related protein RAB 91.6 0.11 3.6E-06 46.8 3.3 24 229-252 27-50 (201)
500 3of5_A Dethiobiotin synthetase 91.6 0.18 6E-06 47.8 5.0 33 233-265 6-39 (228)
No 1
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=100.00 E-value=8.1e-40 Score=325.00 Aligned_cols=238 Identities=37% Similarity=0.584 Sum_probs=200.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcC--CCeEEE-eccccccCHHHHHHHHHcccCCccccccCCCCCccHHHH
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTG--RKSATI-SIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLS 304 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G--~~v~vI-SlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL 304 (476)
.++|.+|||+|++|||||||++.|..+|...| .+++++ ++|+||++..++..+...++.|++++.+|+|+++|.+++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l 107 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLL 107 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHH
Confidence 35789999999999999999999999997644 455556 999999999988887766666789999999999999999
Q ss_pred HHHHHHhhhhhcCC------ceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhh--ccCch
Q 044604 305 VETLTAISKLTKEG------TKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVK--AVDPQ 376 (476)
Q Consensus 305 ~e~L~~Lk~~~k~G------~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~--~~d~~ 376 (476)
.++|..|+ .| +.+.+|.||+....|+++|.+...|..+ +.+|||+||++++.+|...+... ..++.
T Consensus 108 ~~~l~~l~----~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~ 181 (290)
T 1odf_A 108 QEVLNTIF----NNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPILQGIENNDLLTGD 181 (290)
T ss_dssp HHHHHHHT----C------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCCSCTTTCSSSCTT
T ss_pred HHHHHHhh----ccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccchhhhhcccchhh
Confidence 99999995 55 6799999999998899999876557777 56999999999988876432211 12346
Q ss_pred hhHHhHHHhhhhh-hhhhccceE---EEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhh
Q 044604 377 LETVNKNLEAYFD-AWDKFIKAW---IVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLY 452 (476)
Q Consensus 377 l~~vn~~L~dy~D-lw~ifVDa~---I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~ 452 (476)
++.+|++|.+|.+ +|.. +|.+ |+|++++.+++++||++||+.|++..+.|||+|+|.+|+++|||+|+.|++++.
T Consensus 182 l~~~n~~l~~y~~~l~~~-~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~~~~~~~p~y~~~~~~~~ 260 (290)
T 1odf_A 182 MVDVNAKLFFYSDLLWRN-PEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLYLNDFV 260 (290)
T ss_dssp HHHHHHHHHHHHHHTTTC-TTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh-hhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchHHHHhHHHH
Confidence 7889999988876 5532 4555 999999999999999999988877656899999999999999999999999999
Q ss_pred hc-CCCCCCCCceEEEEeCCCCCC
Q 044604 453 SE-GPNGSDPEHTLIIEIDDGRNP 475 (476)
Q Consensus 453 ~~-~P~~a~~~~~Lvl~id~~r~v 475 (476)
++ .|++ +|+|||++|++|+|
T Consensus 261 ~~~~~~~---~adlvl~~~~~~~~ 281 (290)
T 1odf_A 261 RSESLGS---IATLTLGIDSNRNV 281 (290)
T ss_dssp HHTCSSS---SEEEEEEECTTSCE
T ss_pred HhccCCC---CCCEEEEECCCCCE
Confidence 87 6653 79999999999987
No 2
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=2.5e-38 Score=319.65 Aligned_cols=274 Identities=17% Similarity=0.208 Sum_probs=213.2
Q ss_pred CCCCccccchhhhcccHHHHHHHHH---------HHHHHhcCCC-CCCCccccceeeeeeHHHHHHHHHhhhhcCC---c
Q 044604 155 PLIDKMGFSKEKIGDSIDKWIAYNS---------YLCRLFQLNE-LYLTFPQKVGFFTTTYLFSCGVKIKFLSMCP---S 221 (476)
Q Consensus 155 ~l~~~~~f~~e~~~~~i~~w~~l~~---------~l~~l~~lne-~~l~~~~~~r~~ylPL~~~l~~~v~~~~~~~---~ 221 (476)
..++|+.|+|++ |++|+. +|.++.|+|| .++++++ ++|+||+++|+.++...+... .
T Consensus 12 ~~~~~~~~~~~~-------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~y~pl~rll~~~~~~~~~l~~~~~ 81 (321)
T 3tqc_A 12 EITPYLQFNRQQ-------WGNFRKDTPLTLTESDLDKLQGQIEIVSLKEVT---EIYLPLSRLLSFYVTARQTLQQATY 81 (321)
T ss_dssp -CCSEEEEEHHH-------HTC------CCCCHHHHHHTTTTHHHHCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEECHHH-------HHHHhcCCCCCCCHHHHHHhhCCCCCcCHHHHH---HHHHHHHHHHHHhhcchHHHHHHHH
Confidence 357999999999 999975 9999999997 4788877 999999999999988732111 1
Q ss_pred cc-cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc--CCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCC
Q 044604 222 LR-MEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVT--GRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGS 298 (476)
Q Consensus 222 ~~-~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~--G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t 298 (476)
.+ +....++|+||||+|++|||||||++.|..++... +..+.+|++|+||++..++.. ++++..+|+|++
T Consensus 82 ~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~-------~~~~~~~g~P~~ 154 (321)
T 3tqc_A 82 QFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEK-------QGLMKRKGFPES 154 (321)
T ss_dssp HHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHH-------TTCGGGTTSGGG
T ss_pred HHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhh-------HHHHhhccCccc
Confidence 12 33345789999999999999999999999999753 567999999999999876543 245677899999
Q ss_pred ccHHHHHHHHHHhhhhhcCCc-eEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchh
Q 044604 299 HDLQLSVETLTAISKLTKEGT-KMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQL 377 (476)
Q Consensus 299 ~D~~lL~e~L~~Lk~~~k~G~-~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l 377 (476)
+|.+++.++|..|+ +|+ .+.+|+||+.+++ +.+. .+..+ .+.+||||||+++++.+.....- .
T Consensus 155 ~D~~~l~~~L~~L~----~g~~~v~~P~yd~~~~~----r~~~-~~~~v-~~~dIVIvEGi~lL~~~~~~~~~------~ 218 (321)
T 3tqc_A 155 YDMPSLLRVLNAIK----SGQRNVRIPVYSHHYYD----IVRG-QYEIV-DQPDIVILEGLNILQTGVRKTLQ------Q 218 (321)
T ss_dssp BCHHHHHHHHHHHH----TTCSSEEEEEEETTTTE----EEEE-EEEEE-CSCSEEEEECTTTTCCCCCSSSS------S
T ss_pred ccHHHHHHHHHhhh----ccccccccchhhhhccc----cccC-ceeec-cCCCEEEEEcccccccccccccc------c
Confidence 99999999999994 787 8999999999865 4432 23445 55699999999999865210000 0
Q ss_pred hHHhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHh----------CCCCCCHHHHHHHHHHHHHhHHhh
Q 044604 378 ETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREA----------GNPGMSDEEVKDFVSRYLPAYHAY 447 (476)
Q Consensus 378 ~~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~----------~~~GmS~EeV~~Fv~r~~Paye~Y 447 (476)
-+..+.+++|+ .+|||+ +.+..++|+++|+...|.. .+.+++++|+.+++..+|+. ..
T Consensus 219 --~~~~l~~~~D~-~I~Vda-------~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~--~~ 286 (321)
T 3tqc_A 219 --LQVFVSDFFDF-SLFVDA-------QAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNE--IN 286 (321)
T ss_dssp --CCCCGGGGCSE-EEEEEC-------CHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHH--TH
T ss_pred --hhhhhhhhcCe-EEEEEC-------CHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHh--cc
Confidence 00136677777 777777 7899999999999877653 24589999999999999966 55
Q ss_pred hhhhhhc-CCCCCCCCceEEEEeCCCCCC
Q 044604 448 LPTLYSE-GPNGSDPEHTLIIEIDDGRNP 475 (476)
Q Consensus 448 ~~~l~~~-~P~~a~~~~~Lvl~id~~r~v 475 (476)
.+++.++ .|++ .+|+|||.++.+|.|
T Consensus 287 ~pn~~~~I~ptr--~~Adlil~~g~~~~v 313 (321)
T 3tqc_A 287 KVNLMENILPYK--NRAQLILEKAADHSI 313 (321)
T ss_dssp HHHHHHHTGGGG--GGCSEEEEECTTSCE
T ss_pred ccCHHHhCccCc--cCceEEEecCCCCcE
Confidence 6677665 7888 789999999999986
No 3
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.96 E-value=1.9e-29 Score=252.87 Aligned_cols=267 Identities=17% Similarity=0.166 Sum_probs=196.1
Q ss_pred CCCCccccchhhhcccHHHHHHHHH---------HHHHHhcCCC-CCCCccccceeeeeeHHHHHHHHHhhhhc-C--Cc
Q 044604 155 PLIDKMGFSKEKIGDSIDKWIAYNS---------YLCRLFQLNE-LYLTFPQKVGFFTTTYLFSCGVKIKFLSM-C--PS 221 (476)
Q Consensus 155 ~l~~~~~f~~e~~~~~i~~w~~l~~---------~l~~l~~lne-~~l~~~~~~r~~ylPL~~~l~~~v~~~~~-~--~~ 221 (476)
.++||+.|+|++ |.+|+. ++.++.++++ ..+..+. .+|.|+.+.++.++.+... + ..
T Consensus 6 ~~~~~~~~~r~~-------~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~v~---~~y~p~~~~~~~~~~~~~~~~~~~~ 75 (312)
T 3aez_A 6 EPSPYVEFDRRQ-------WRALRMSTPLALTEEELVGLRGLGEQIDLLEVE---EVYLPLARLIHLQVAARQRLFAATA 75 (312)
T ss_dssp CCCSEEEEEHHH-------HHGGGTTCCCCCCHHHHHTTCCTTCCCCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceeECHHH-------HHHHHhcCCCCCCHHHHHhccCCCCeEEeeehh---hhhhhHHHHHHHHHhhhhHHHHHHH
Confidence 467899999999 999974 8889999997 3666665 7789999999988655210 1 01
Q ss_pred cc-cc----cCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-C-CCeEEEeccccccCHHHHHHHHHcccCCccccccC
Q 044604 222 LR-ME----KIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVT-G-RKSATISIDDFYLTAEGQAKLREANRGNALLEFRG 294 (476)
Q Consensus 222 ~~-~~----~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-G-~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG 294 (476)
.| +. ....++.+|||+|++|||||||++.|..++... | .++.+|++|+||++...++.+ .++..+|
T Consensus 76 ~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~-------~~~~~~g 148 (312)
T 3aez_A 76 EFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRR-------NLMHRKG 148 (312)
T ss_dssp HHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHT-------TCTTCTT
T ss_pred HhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHH-------HHHHhcC
Confidence 11 11 124568999999999999999999999999765 4 478999999999998555432 2344468
Q ss_pred CCCCccHHHHHHHHHHhhhhhcCCc-eEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhcc
Q 044604 295 NAGSHDLQLSVETLTAISKLTKEGT-KMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAV 373 (476)
Q Consensus 295 ~P~t~D~~lL~e~L~~Lk~~~k~G~-~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~ 373 (476)
.|+++|.+.+.+.|..++ .|. .+.+|.||+.... |+... +..+ .+.+|||+||++++.++..
T Consensus 149 ~~~~~d~~~~~~~L~~l~----~~~~~~~~~~lS~G~~q----Rv~~a-~al~-~~p~ilIlDep~~~~d~~~------- 211 (312)
T 3aez_A 149 FPESYNRRALMRFVTSVK----SGSDYACAPVYSHLHYD----IIPGA-EQVV-RHPDILILEGLNVLQTGPT------- 211 (312)
T ss_dssp SGGGBCHHHHHHHHHHHH----TTCSCEEEEEEETTTTE----EEEEE-EEEE-CSCSEEEEECTTTTCCCSS-------
T ss_pred CChHHHHHHHHHHHHHhC----CCcccCCcccCChhhhh----hhhhH-HHhc-cCCCEEEECCccccCCcch-------
Confidence 999999999999999994 454 4889999986543 54322 2334 4459999999999975311
Q ss_pred CchhhHHhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCC----------CCCCHHHHHHHHHHHHHh
Q 044604 374 DPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGN----------PGMSDEEVKDFVSRYLPA 443 (476)
Q Consensus 374 d~~l~~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~----------~GmS~EeV~~Fv~r~~Pa 443 (476)
..+.+++|+ .+|||+ +.+.+.+|+++|+..+|+... .|||++++.+|+..+|+.
T Consensus 212 --------~~l~~~~D~-~I~V~a-------~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~ 275 (312)
T 3aez_A 212 --------LMVSDLFDF-SLYVDA-------RIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWRT 275 (312)
T ss_dssp --------CCGGGGCSE-EEEEEE-------CHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTTCCHHHHHHHHHHHHHH
T ss_pred --------HHHHHhcCc-EEEEEC-------CHHHHHHHHHHHHHHHHhccccCcchhhhcccCCCHHHHHHHHHHHHHh
Confidence 135566665 455555 779999999999988776432 599999999999987765
Q ss_pred HHhhhhhhhhc-CCCCCCCCceEEEEeCCCCCC
Q 044604 444 YHAYLPTLYSE-GPNGSDPEHTLIIEIDDGRNP 475 (476)
Q Consensus 444 ye~Y~~~l~~~-~P~~a~~~~~Lvl~id~~r~v 475 (476)
...+++... .|++ .+|++||.++.+|.|
T Consensus 276 --~~~p~~~~~i~p~~--~~ADlii~~~~~~~v 304 (312)
T 3aez_A 276 --INRPNLVENILPTR--PRATLVLRKDADHSI 304 (312)
T ss_dssp --THHHHHHHTTGGGG--GGCSEEEEECTTSCE
T ss_pred --ccHHHHHHhccCCC--CCCeEEEecCCCCce
Confidence 333434332 3554 467799999999986
No 4
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.95 E-value=2e-27 Score=235.96 Aligned_cols=269 Identities=16% Similarity=0.168 Sum_probs=187.2
Q ss_pred CCCccccchhhhcccHHHHHHHHH---------HHHHHhcCCC-CCCCccccceeeeeeHHHHHHHHHhhhh-cC--Ccc
Q 044604 156 LIDKMGFSKEKIGDSIDKWIAYNS---------YLCRLFQLNE-LYLTFPQKVGFFTTTYLFSCGVKIKFLS-MC--PSL 222 (476)
Q Consensus 156 l~~~~~f~~e~~~~~i~~w~~l~~---------~l~~l~~lne-~~l~~~~~~r~~ylPL~~~l~~~v~~~~-~~--~~~ 222 (476)
+++|+.|++++ |.+|+. +...+.++++ ..+..+. ..|.|+++.++..+.... .+ ...
T Consensus 1 ~~~~~~~~r~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~---~~y~~~~~~i~~~~~~~~~~~~~~~~ 70 (308)
T 1sq5_A 1 MTPYLQFDRNQ-------WAALRDSVPMTLSEDEIARLKGINEDLSLEEVA---EIYLPLSRLLNFYISSNLRRQAVLEQ 70 (308)
T ss_dssp CCSEEEEEHHH-------HHHTCC---C-CCHHHHHHHHHHCTTCCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccEEECHHH-------HHHhhhcCCCCCCHHHHHhhhCCccccchHhHH---HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 35899999999 999853 3456667765 3555554 667799999988773310 00 001
Q ss_pred c-cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHHH--HcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCc
Q 044604 223 R-MEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFR--VTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSH 299 (476)
Q Consensus 223 ~-~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~--~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~ 299 (476)
+ +.....++.+|||.|++|||||||++.|..++. ..+..+.+|++|+|+.+...+... ++++..|.|+++
T Consensus 71 ~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~-------~~vq~~~~~~~~ 143 (308)
T 1sq5_A 71 FLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKER-------GLMKKKGFPESY 143 (308)
T ss_dssp HHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHH-------TCTTCTTSGGGB
T ss_pred HhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhC-------CEeecCCCCCCc
Confidence 1 212235678999999999999999999999986 334568899999999876544321 334566889999
Q ss_pred cHHHHHHHHHHhhhhhcCCce-EEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhh
Q 044604 300 DLQLSVETLTAISKLTKEGTK-MKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLE 378 (476)
Q Consensus 300 D~~lL~e~L~~Lk~~~k~G~~-v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~ 378 (476)
|...+...+..++ .|.. +..|.||+..++ +.+. .|..+ .+.+|||+||++++..+.... .+++
T Consensus 144 ~~~~~~~~~~~l~----~~~~~i~~P~~~~~~~~----~~~~-~~~~~-~~~~ivIlEG~~l~~~~~~~~----~~~~-- 207 (308)
T 1sq5_A 144 DMHRLVKFVSDLK----SGVPNVTAPVYSHLIYD----VIPD-GDKTV-VQPDILILEGLNVLQSGMDYP----HDPH-- 207 (308)
T ss_dssp CHHHHHHHHHHHT----TTCSCEEECCEETTTTE----ECTT-CCEEE-C-CCEEEEECTTTTCCGGGCT----TSCC--
T ss_pred cHHHHHHHHHHHh----CCCCceecccccccccC----cccc-cceec-CCCCEEEECchhhCCCccccc----cccc--
Confidence 9999999998883 6666 999999998754 5543 24445 445999999999987521000 0000
Q ss_pred HHhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCC----------CCCCHHHHHHHHHHHHHh-----
Q 044604 379 TVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGN----------PGMSDEEVKDFVSRYLPA----- 443 (476)
Q Consensus 379 ~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~----------~GmS~EeV~~Fv~r~~Pa----- 443 (476)
...+.+++|+ .|++++ +.+.+++|+++|+..+|+... +|||+|++.+++...|+.
T Consensus 208 --~~~~~~~~D~-------~i~V~~-~~~~~~~R~~~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~ 277 (308)
T 1sq5_A 208 --HVFVSDFVDF-------SIYVDA-PEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLN 277 (308)
T ss_dssp --SSCGGGGCSE-------EEEEEC-CHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHH
T ss_pred --hHHHHHhCCE-------EEEEEC-CHHHHHHHHHHHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHH
Confidence 0124444444 555555 679999999999998887654 399999999999987764
Q ss_pred HHhhhhhhhhcCCCCCCCCceEEEEeCCCCCC
Q 044604 444 YHAYLPTLYSEGPNGSDPEHTLIIEIDDGRNP 475 (476)
Q Consensus 444 ye~Y~~~l~~~~P~~a~~~~~Lvl~id~~r~v 475 (476)
++.|+.+. + ..|++||..+.+|.|
T Consensus 278 ~~~~i~~~------~--~~AD~vI~n~~~~~v 301 (308)
T 1sq5_A 278 LKQNILPT------R--ERASLILTKSANHAV 301 (308)
T ss_dssp HHHTTGGG------G--GGCSEEEEECGGGCE
T ss_pred HHHHcccc------c--ccCcEEEEeCCCCcE
Confidence 44444433 3 356699999998876
No 5
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.89 E-value=1.4e-23 Score=215.14 Aligned_cols=169 Identities=13% Similarity=0.114 Sum_probs=122.4
Q ss_pred CeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHHHHhhhhh--------------------cC---
Q 044604 261 KSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLT--------------------KE--- 317 (476)
Q Consensus 261 ~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~Lk~~~--------------------k~--- 317 (476)
.|++|+|||||++++++..+. ++ ++++.+||+|+|||..+|.++|+.|++.+ ..
T Consensus 155 ~v~vi~mDgFh~~~~~L~~~~--d~-~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 231 (359)
T 2ga8_A 155 IAQIVPMDGFHLSRRCLDLFK--DP-QTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFS 231 (359)
T ss_dssp SEEEEEGGGGBCCHHHHTTSS--ST-HHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEE
T ss_pred eEEEEecCcCCCCHHHHhhcc--Cc-chhhccCCCCccccHHHHHHHHHHHHcCCccccccccccccccccccccccccc
Confidence 478999999999999876531 11 23567889999999999999999997530 00
Q ss_pred --CceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhhh-----h
Q 044604 318 --GTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFD-----A 390 (476)
Q Consensus 318 --G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~D-----l 390 (476)
.+.|.+|.|||..++ +.++. ..+.++.+||||||+++|++.. .+..|++++| +
T Consensus 232 ~~~~~v~~P~yD~~~~d----~~~~~--~~v~~~~~iVIvEGi~LL~e~~--------------~w~~l~~l~D~~~~~~ 291 (359)
T 2ga8_A 232 QTIPDIFVPGFNHALKD----PTPDQ--YCISKFTRIVILEGLYLLYDQE--------------NWKKIYKTLADTGALL 291 (359)
T ss_dssp TTCCCEEEEEEETTTTE----EEEEE--EEECTTCCEEEEEESSTTBCSH--------------HHHHHHHHHHTTTCEE
T ss_pred ccCceEeeccccCccCC----CCCCc--eEecCCCCEEEEEeehhhcccc--------------chhhhhhccccccceE
Confidence 157999999999865 55532 4554546999999999997521 1346888888 5
Q ss_pred hhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEEE
Q 044604 391 WDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGM--SDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIE 468 (476)
Q Consensus 391 w~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~Gm--S~EeV~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl~ 468 (476)
.+|||+ +++...+|+++|+.+ +|+ |.|++.+++... -.++..--.|++ .+|++||+
T Consensus 292 -~i~Vda-------d~ev~~~Rli~R~~~------~Gl~~s~eea~~r~~~~------d~pN~~~I~~~~--~~ad~i~~ 349 (359)
T 2ga8_A 292 -VYKIDI-------DYEATEERVAKRHLQ------SGLVTTIAEGREKFRSN------DLLNGRDIDNHL--IKVDNIVH 349 (359)
T ss_dssp -EEEEEC-------CHHHHHHHHHHHHHH------TTSCSSHHHHHHHHHHC------TTTSSHHHHHTB--CCCTTEEE
T ss_pred -EEEEEC-------CHHHHHHHHHHhhhc------cCCCCCHHHHHHHHHhc------CchhhHhHhhcC--CCCCEEEE
Confidence 678888 889999999999863 689 999996655532 222221113555 56779999
Q ss_pred eCCCCC
Q 044604 469 IDDGRN 474 (476)
Q Consensus 469 id~~r~ 474 (476)
|-.+|.
T Consensus 350 ~~~~~~ 355 (359)
T 2ga8_A 350 IRNDHH 355 (359)
T ss_dssp EECCC-
T ss_pred ecCCcc
Confidence 988874
No 6
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.84 E-value=2.5e-21 Score=191.64 Aligned_cols=188 Identities=18% Similarity=0.246 Sum_probs=128.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc-CHHHHHH-HHH--cccCCccccccCCCCCccHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL-TAEGQAK-LRE--ANRGNALLEFRGNAGSHDLQLSV 305 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl-~~~er~~-la~--~~p~npLl~~rG~P~t~D~~lL~ 305 (476)
++++|||+|++||||||+|+.|+..|...|.++.+|++|+||+ +..++.. ++. .. ++..++..| |+++|.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~-g~~~~~~fg-~~~~d~~~l~ 81 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAA-GDATFSHFS-YEANELKELE 81 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHH-TCTTCSTTS-GGGBCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhc-cCcCcCCCC-hhhhcHHHHH
Confidence 5679999999999999999999999887778899999999998 5665432 111 11 111233333 8999999999
Q ss_pred HHHHHhhhhhcCCceEEeecccc-----ccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHH
Q 044604 306 ETLTAISKLTKEGTKMKLPRYDK-----SAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETV 380 (476)
Q Consensus 306 e~L~~Lk~~~k~G~~v~iP~YD~-----s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~v 380 (476)
+.|..++ .|+.+..|.|++ ..|....... ..|..+..+.++||+||++++....
T Consensus 82 ~~l~~l~----~~~~i~~~~~~~~~~e~~~~~~~~~~~--~~~~~~~~~~~vvIvEG~~~~~~~~--------------- 140 (290)
T 1a7j_A 82 RVFREYG----ETGQGRTRTYVHDDAEAARTGVAPGNF--TDWRDFDSDSHLLFYEGLHGAVVNS--------------- 140 (290)
T ss_dssp HHHHHHH----HHSCCEECCCC------CCSSCCTTSC--CCCEECCSSCSEEEEEESCTTCBCS---------------
T ss_pred HHHHHHH----cCCcccceeeccccccccccCCCCCcc--ccccccCCCCCEEEEEecccccccc---------------
Confidence 9998884 567789999965 3332111111 1244554457999999999984210
Q ss_pred hHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhh
Q 044604 381 NKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYS 453 (476)
Q Consensus 381 n~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~ 453 (476)
...+.+++|+ .+||++ +.+..++||++|+. ..+|++.|++.+.+...+|.|+.|+.+...
T Consensus 141 ~~~v~~~~D~-~IfV~a-------~~~~rl~Rrl~Rd~-----~~RG~s~e~v~~~i~~r~~~~~r~i~p~~~ 200 (290)
T 1a7j_A 141 EVNIAGLADL-KIGVVP-------VINLEWIQKIHRDR-----ATRGYTTEAVTDVILRRMHAYVHCIVPQFS 200 (290)
T ss_dssp SCBCGGGCSE-EEEEEE-------CHHHHHHHHHHHTS-----SSCCSCCCCHHHHHHHHHHHHHHHTGGGGG
T ss_pred hHhHHHhCCE-EEEEEC-------CHHHHHHHHhhhhh-----hhcCCChHHHHHHHHHhCccHHHhhhhhhc
Confidence 0124455555 555555 67888899988864 468999999966665559999999888764
No 7
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.82 E-value=1.3e-19 Score=168.66 Aligned_cols=178 Identities=17% Similarity=0.184 Sum_probs=129.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL 308 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L 308 (476)
.++.+|||.|++|||||||++.|..++...|..+..|++|+|+.+...+..+ +.+..+|.|.++|...+.+.|
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l 92 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPR-------GLLPRKGAPETFDFEGFQRLC 92 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGG-------TCGGGTTSGGGBCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHh-------cccccCCCCchhhHHHHHHHH
Confidence 4568999999999999999999999997666778999999999987654321 234556899999999999999
Q ss_pred HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604 309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF 388 (476)
Q Consensus 309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~ 388 (476)
..|. .|+.+..|.||+.... +.. +++.+....+++|+||.+++++... +..+.+++
T Consensus 93 ~~l~----~~~~i~~p~~d~~~~~----~~g--~~~~v~~~~~~~i~eg~~~l~de~~--------------~~~l~~~~ 148 (208)
T 3c8u_A 93 HALK----HQERVIYPLFDRARDI----AIA--GAAEVGPECRVAIIEGNYLLFDAPG--------------WRDLTAIW 148 (208)
T ss_dssp HHHH----HCSCEEEEEEETTTTE----EEE--EEEEECTTCCEEEEEESSTTBCSTT--------------GGGGGGTC
T ss_pred HHHh----cCCceecccCCccccC----CCC--CceEEcCCCcEEEECCceeccCCch--------------hHHHHHhc
Confidence 9994 6788999999997643 222 2345643348999999998763211 22345555
Q ss_pred hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHhHHhhhhhhh
Q 044604 389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVS-RYLPAYHAYLPTLY 452 (476)
Q Consensus 389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~-r~~Paye~Y~~~l~ 452 (476)
|+ .+|||+ +.+...+|+++|.. .+|++.+++.+++. +.+|.+ .|+.+..
T Consensus 149 d~-~i~vd~-------~~~~~~~R~~~R~~------~~g~t~~~~~~~~~~~~~~~~-~~i~~~~ 198 (208)
T 3c8u_A 149 DV-SIRLEV-------PMADLEARLVQRWL------DHGLNHDAAVARAQGNDLANA-RAIEAAR 198 (208)
T ss_dssp SE-EEEECC-------CHHHHHHHHHHHHH------HTTCCHHHHHHHHHTHHHHHH-HHHHTTB
T ss_pred CE-EEEEeC-------CHHHHHHHHHHHHH------hcCCCHHHHHHHHHhccHHHH-HHHHhCC
Confidence 55 455554 55666666676653 36899999976666 578865 5665544
No 8
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.79 E-value=8.8e-19 Score=167.80 Aligned_cols=178 Identities=21% Similarity=0.353 Sum_probs=124.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-----CCCeEEEeccccccC--HHHHHHHHHcccCCccccccCCCCCcc
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVT-----GRKSATISIDDFYLT--AEGQAKLREANRGNALLEFRGNAGSHD 300 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-----G~~v~vISlDDFYl~--~~er~~la~~~p~npLl~~rG~P~t~D 300 (476)
..+|++|||+|++||||||+|+.|+..|... +.++.+|++|+||.. ..++.+ ...+. +. .+.|+++|
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~-~~~g~----~~-f~~~~~~d 92 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAK-ALKGQ----FN-FDHPDAFD 92 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHH-HHTTC----SC-TTSGGGBC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhh-hccCC----CC-CCCcchhh
Confidence 4578999999999999999999999987532 456889999999974 322221 11111 12 25799999
Q ss_pred HHHHHHHHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHH
Q 044604 301 LQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETV 380 (476)
Q Consensus 301 ~~lL~e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~v 380 (476)
++++.+.|+.| ..|..+.+|.||+..+. +.. .|..+ .+.++||+||+++++.
T Consensus 93 ~~~l~~~L~~l----~~~~~v~~~~~d~~~~~----~~~--~~~~~-~~~~~vIveG~~~~~~----------------- 144 (252)
T 1uj2_A 93 NELILKTLKEI----TEGKTVQIPVYDFVSHS----RKE--ETVTV-YPADVVLFEGILAFYS----------------- 144 (252)
T ss_dssp HHHHHHHHHHH----HTTCCEEEEEEETTTTE----EEE--EEEEE-CCCSEEEEECTTTTSS-----------------
T ss_pred HHHHHHHHHHH----HcCCeeecCcccccccc----CCC--ceeee-CCCcEEEEeeeccccC-----------------
Confidence 99999999999 47888999999998754 221 13333 3568999999888642
Q ss_pred hHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhhh
Q 044604 381 NKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLYS 453 (476)
Q Consensus 381 n~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~~ 453 (476)
+.+.+.+|+ .|+|++ +++...+|+.+|+.. .+|++.+++ ..|..+..+.|+.++.+...
T Consensus 145 -~~~~~~~d~-------vi~l~~-~~e~~~~R~~~R~~~-----~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~ 204 (252)
T 1uj2_A 145 -QEVRDLFQM-------KLFVDT-DADTRLSRRVLRDIS-----ERGRDLEQILSQYITFVKPAFEEFCLPTKK 204 (252)
T ss_dssp -HHHHHHCSE-------EEEEEC-CHHHHHHHHHHHHHH-----HSCCCHHHHHHHHHHTHHHHHHHHTGGGGG
T ss_pred -HHHHHhcCe-------eEEEeC-CHHHHHHHHHHHHHh-----hhCCCHHHHHHHHHHhccHHHHHHhhhhhh
Confidence 234555554 444444 667777777776531 357888888 56777777888888766543
No 9
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.70 E-value=3.8e-18 Score=158.14 Aligned_cols=167 Identities=21% Similarity=0.285 Sum_probs=107.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL 308 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L 308 (476)
.++.+|||.|++||||||+++.|...+...|..+.++++|+|+++..++.. . ..+. ....+++++|.+.+.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~---~--~~~~-~~~~~~~~~d~~~l~~~v 93 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYH---T--GNEE-WFEYYYLQWDVEWLTHQL 93 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSS---S--SSCH-HHHHHHTSSCHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHh---c--CCCC-ccCCCccccCHHHHHHHH
Confidence 457899999999999999999999999877888889999999998764322 1 1000 000135899999887765
Q ss_pred -HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhh
Q 044604 309 -TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAY 387 (476)
Q Consensus 309 -~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy 387 (476)
..+ +.|+.+.+|.|+|.... +.. .+ ....+.++|||||++++.. .+.++
T Consensus 94 ~~~l----~~~~~~~~~~~~~~~~~----~~~--~~-~~~~~~~~vIveg~~l~~~-------------------~~~~~ 143 (201)
T 1rz3_A 94 FRQL----KASHQLTLPFYDHETDT----HSK--RT-VYLSDSDMIMIEGVFLQRK-------------------EWRPF 143 (201)
T ss_dssp GGGT----TTCSEEEEEEEETTTTE----EEE--EE-EECTTCSEEEEEETTTTST-------------------TTGGG
T ss_pred HHHH----hcCCccccCceeccCCC----CCC--ce-EEeCCCcEEEEechhhccH-------------------HHHhh
Confidence 667 47789999999997311 111 11 2224568999999998731 23444
Q ss_pred hhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhh
Q 044604 388 FDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTL 451 (476)
Q Consensus 388 ~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l 451 (476)
+|+ .|+|++ +.+..++|+++|+ ++....|..+++|+|+.|+...
T Consensus 144 ~d~-------~i~v~~-~~~~~~~R~~~R~------------~~~~~~~~~~~~~~~~~y~~~~ 187 (201)
T 1rz3_A 144 FDF-------VVYLDC-PREIRFARENDQV------------KQNIQKFINRYWKAEDYYLETE 187 (201)
T ss_dssp CSE-------EEEECC-C--------------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred cCE-------EEEEeC-CHHHHHHHHhcCC------------HHHHHHHHhheeHHHHHHhCCC
Confidence 444 455544 4566665555442 2233667799999999998765
No 10
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.62 E-value=4.8e-15 Score=136.53 Aligned_cols=184 Identities=24% Similarity=0.356 Sum_probs=126.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL 308 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L 308 (476)
.++.+|||.|++|||||||++.|..++.. .+.++++|+||.+..........+ +. .+.|+++|.+.+.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~l 74 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDLGHLPLEERLR-----VN-YDHPDAFDLALYLEHA 74 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCCTTSCHHHHHH-----SC-TTSGGGBCHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCcccccHHHhcC-----CC-CCChhhhhHHHHHHHH
Confidence 35689999999999999999999998842 588999999997422110000000 11 2568899999999999
Q ss_pred HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604 309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF 388 (476)
Q Consensus 309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~ 388 (476)
+.++ .++.+..|.|+.+.. .+... ...+ ...+++|+||.+++.+ +.+..++
T Consensus 75 ~~~~----~~~~~~~~~~~~s~g----~~~~~--~~~~-~~~~~li~~~~ll~~d------------------e~~~~~~ 125 (211)
T 3asz_A 75 QALL----RGLPVEMPVYDFRAY----TRSPR--RTPV-RPAPVVILEGILVLYP------------------KELRDLM 125 (211)
T ss_dssp HHHH----TTCCEEECCEETTTT----EECSS--CEEE-CCCSEEEEESTTTTSS------------------HHHHTTC
T ss_pred HHHH----cCCCcCCCcccCccc----CCCCC--eEEe-CCCcEEEEeehhhccC------------------HHHHHhc
Confidence 8884 567788899988753 23221 2344 4568999999999852 3455555
Q ss_pred hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEE
Q 044604 389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLII 467 (476)
Q Consensus 389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl 467 (476)
|. .+|||+ +.+....++++|+.+ .+|++...+ .++...+.|.|+.|+++.... +++||
T Consensus 126 d~-~i~ld~-------~~~~~~~r~l~r~~~-----~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~--------aD~ii 184 (211)
T 3asz_A 126 DL-KVFVDA-------DADERFIRRLKRDVL-----ERGRSLEGVVAQYLEQVKPMHLHFVEPTKRY--------ADVIV 184 (211)
T ss_dssp SE-EEEEEC-------CHHHHHHHHHHHHHH-----HSCCCHHHHHHHHHHTHHHHHHHTTGGGGGG--------CSEEE
T ss_pred CE-EEEEeC-------CHHHHHHHHHHHHHH-----HhCCCHHHHHHHHHHhhhhhHHHhcccchhc--------CeEEE
Confidence 65 555554 556666667776532 358888887 667888899999998876532 34777
Q ss_pred EeCC
Q 044604 468 EIDD 471 (476)
Q Consensus 468 ~id~ 471 (476)
.-+.
T Consensus 185 ~~~~ 188 (211)
T 3asz_A 185 PRGG 188 (211)
T ss_dssp ESTT
T ss_pred eCCC
Confidence 6543
No 11
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.57 E-value=3.9e-14 Score=134.96 Aligned_cols=176 Identities=23% Similarity=0.352 Sum_probs=114.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-----CCCeEEEecccccc--CHHHHHHHHHcccCCccccccCCCCCccH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVT-----GRKSATISIDDFYL--TAEGQAKLREANRGNALLEFRGNAGSHDL 301 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-----G~~v~vISlDDFYl--~~~er~~la~~~p~npLl~~rG~P~t~D~ 301 (476)
.++.+|||.|++|||||||++.|..++... ...+.++.+|+||. +..+....... .+. .+.|+++|.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~-----~~~-~~~~~~~~~ 96 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKG-----QYN-FDHPDAFDN 96 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTT-----CCC-TTSGGGBCH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhcc-----CCC-CCCcccccH
Confidence 356899999999999999999999988431 23567899999885 33333222111 111 245778999
Q ss_pred HHHHHHHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHh
Q 044604 302 QLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVN 381 (476)
Q Consensus 302 ~lL~e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn 381 (476)
+.+.+.|..|. .+....+|.||..... |+.. +..+ .+.++||+||+.++..
T Consensus 97 ~~~~~~L~~l~----~~~~~~~~~ls~g~~~----r~~~--~~~~-~~~~~lilDg~~~~~~------------------ 147 (245)
T 2jeo_A 97 DLMHRTLKNIV----EGKTVEVPTYDFVTHS----RLPE--TTVV-YPADVVLFEGILVFYS------------------ 147 (245)
T ss_dssp HHHHHHHHHHH----TTCCEEECCEETTTTE----ECSS--CEEE-CCCSEEEEECTTTTTS------------------
T ss_pred HHHHHHHHHHH----CCCCeecccccccccC----ccCc--eEEe-cCCCEEEEeCcccccc------------------
Confidence 99999998883 5667788889876543 4422 2334 4459999999877632
Q ss_pred HHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhhh
Q 044604 382 KNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLYS 453 (476)
Q Consensus 382 ~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~~ 453 (476)
..+.+++ |..|++.++ .+....+++.|+. ..|++.+++ .++..+..|.++.|+.+...
T Consensus 148 ~~l~~~~-------~~~i~v~th-~~~~~~r~~~r~~------~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~ 206 (245)
T 2jeo_A 148 QEIRDMF-------HLRLFVDTD-SDVRLSRRVLRDV------RRGRDLEQILTQYTTFVKPAFEEFCLPTKK 206 (245)
T ss_dssp HHHHTTC-------SEEEEEECC-HHHHHHHHHHHHT------C---CHHHHHHHHHHTHHHHHHHHTGGGGG
T ss_pred HHHHHhc-------CeEEEEECC-HHHHHHHHHHHHH------HcCCCHHHHHHHHHHhhhHhHHHhCCcchh
Confidence 2343333 555666554 3444455555442 568899999 56777888998988776653
No 12
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.24 E-value=1.5e-12 Score=119.88 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=91.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL 308 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L 308 (476)
.++.+|||.|++||||||+++.|...+. .+.+|++|+|+.+...... ..+-+...+.+++.|...+.+.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~i 88 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDFFKPESEIET------DKNGFLQYDVLEALNMEKMMSAI 88 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGGBCCGGGSCB------CTTSCBCCSSGGGBCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCccccCHhHhhc------cccCCChhHHHHHhHHHHHHHHH
Confidence 4578999999999999999999987652 5789999999986532100 00111122456678888888877
Q ss_pred HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604 309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF 388 (476)
Q Consensus 309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~ 388 (476)
..+.. + .+ .|.... + . .. ..+.+++|+||..++.. +.+.+.
T Consensus 89 ~~~l~----~-~~-~~~~~~------~--~-----~~-~~~~~~vi~eg~~~~~~------------------~~~~~~- 129 (207)
T 2qt1_A 89 SCWME----S-AR-HSVVST------D--Q-----ES-AEEIPILIIEGFLLFNY------------------KPLDTI- 129 (207)
T ss_dssp HHHHH----H-HT-TSSCCC-------------------CCCCEEEEECTTCTTC------------------GGGTTT-
T ss_pred HHHHh----C-CC-CCCcCC------C--e-----ee-cCCCCEEEEeehHHcCc------------------HHHHHh-
Confidence 66521 1 00 111110 0 0 11 23458999999765521 112233
Q ss_pred hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhh
Q 044604 389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLY 452 (476)
Q Consensus 389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~ 452 (476)
.|..|+++++ ++...+|+.. |+++.+++ ..|..++|+.|..+.+...
T Consensus 130 ------~d~~i~l~~~-~~~~~~R~~~----------R~~~~e~~~~~~~~~~~~~~~~~~~~~~ 177 (207)
T 2qt1_A 130 ------WNRSYFLTIP-YEECKRRRST----------RVYQPPDSPGYFDGHVWPMYLKYRQEMQ 177 (207)
T ss_dssp ------CSEEEEEECC-HHHHHHHHHH----------SCCSSCCCTTHHHHTHHHHHHHHHHHGG
T ss_pred ------cCeeEEEECC-HHHHHHHHHH----------cCCCccchHHHHHHHHhHHHHHHHHHHH
Confidence 3455566553 4444433322 23444443 3566689998877665543
No 13
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.91 E-value=1.8e-10 Score=112.94 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=32.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+.+|++|||+|++||||||+|+.|+. + .+.+|++|+|+
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~-l-----g~~~id~D~~~ 109 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN-L-----GAYIIDSDHLG 109 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH-H-----TCEEEEHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH-C-----CCcEEehhHHH
Confidence 45689999999999999999999984 4 35789999994
No 14
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.88 E-value=1.6e-10 Score=117.72 Aligned_cols=151 Identities=13% Similarity=0.125 Sum_probs=84.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc--ccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF--YLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL 308 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF--Yl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L 308 (476)
+.+|+|+||+||||||||..|+..| .+.+|++|+| |....... ..| ..-+..|.| ..|
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l-----~~~iis~Ds~qvYr~~~i~T----akp--~~eE~~~v~---------hhl 66 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKF-----NGEIISGDSMQVYQGMDIGT----AKV--TTEEMEGIP---------HYM 66 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT-----TEEEEECCSSTTBTTCCTTT----TCC--CTTTTTTCC---------EES
T ss_pred CceEEEECCCcCcHHHHHHHHHHHc-----CCceeccccccccccccccc----cCC--CHHHHHHHH---------HHH
Confidence 4689999999999999999999887 3789999999 75432100 000 000112222 112
Q ss_pred HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604 309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF 388 (476)
Q Consensus 309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~ 388 (476)
..+ ..+.. .+|+||+..... .... ..+..+..|||++|..+.. +.|.+.+
T Consensus 67 ~di----~~~~~-~~~~~dF~~~a~----~~i~--~i~~~g~~~IlvGGt~ly~-------------------~~l~~~l 116 (340)
T 3d3q_A 67 IDI----LPPDA-SFSAYEFKKRAE----KYIK--DITRRGKVPIIAGGTGLYI-------------------QSLLYNY 116 (340)
T ss_dssp SSC----BCTTS-CCCHHHHHHHHH----HHHH--HHHHTTCEEEEECCCHHHH-------------------HHHHBCS
T ss_pred HHH----hCCcc-ccCHHHHHHHHH----HHHH--HHHhCCCcEEEECChhhhH-------------------HHHHhcc
Confidence 223 24434 677787754321 1000 1122455889999998542 3344332
Q ss_pred hhhhhccc-eEEEEecCCCc--hhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhh
Q 044604 389 DAWDKFIK-AWIVIKIKDPS--CVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLP 449 (476)
Q Consensus 389 Dlw~ifVD-a~I~L~~~d~d--~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~ 449 (476)
.+|++ + |++ ...++|++| . ..+| .+.+.++...+-|.|..++.
T Consensus 117 ---~~~~~~~-------d~~~~~Rlrrrl~r-~-----~~~G--~~~l~~~L~~vdP~~a~~I~ 162 (340)
T 3d3q_A 117 ---AFEDESI-------SEDKMKQVKLKLKE-L-----EHLN--NNKLHEYLASFDKESAKDIH 162 (340)
T ss_dssp ---CCC---C-------CHHHHHHHHHHHHT-T-----SSSC--HHHHHHHHHHHCHHHHHHSC
T ss_pred ---cccCCCC-------ChHHHHHHHHHHHH-H-----HhcC--HHHHHHHHHhhCcHHHhhcC
Confidence 23444 3 444 234555554 2 2344 35677778877777766543
No 15
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.58 E-value=1.1e-08 Score=95.55 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=67.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHH--HHHHHHcccCCccccccCCCCCccHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEG--QAKLREANRGNALLEFRGNAGSHDLQLSVE 306 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~e--r~~la~~~p~npLl~~rG~P~t~D~~lL~e 306 (476)
..-++|||+|+.||||||+++.|+..+ .+.+|.+|+++....+ ..++.+.. +...+ . ++++|.+.|.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l-----g~~vid~D~~~~~~~~~~~~~i~~~f-G~~~~---~-~g~ldr~~L~~ 79 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY-----GAHVVNVDRIGHEVLEEVKEKLVELF-GGSVL---E-DGKVNRKKLAG 79 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHHTHHHHHHHH-CGGGB---S-SSSBCHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc-----CCEEEECcHHHHHHHHHHHHHHHHHh-Chhhc---C-CCCcCHHHHHH
Confidence 346899999999999999999999887 3678999999864332 12222111 11222 2 68899987766
Q ss_pred HH-HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccc
Q 044604 307 TL-TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLG 361 (476)
Q Consensus 307 ~L-~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll 361 (476)
.+ ..... ++..+.+..|.+...... .+.....+||+||-+++
T Consensus 80 ~vF~~~~~-~~~l~~i~hP~i~~~~~~------------~~~~~~~~vv~d~pll~ 122 (192)
T 2grj_A 80 IVFESREN-LKKLELLVHPLMKKRVQE------------IINKTSGLIVIEAALLK 122 (192)
T ss_dssp HHTTCHHH-HHHHHHHHHHHHHHHHHH------------HHHTCCEEEEEECTTTT
T ss_pred HHhCCHHH-HHHHHhhhCHHHHHHHHH------------HHHHcCCEEEEEEecee
Confidence 42 11100 012234567777654321 11111368999987665
No 16
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.41 E-value=3.9e-06 Score=74.77 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=32.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
+|.+|+|.|++||||||+|+.|+..+ ...+|++|++..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d~~~~ 39 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY-----GYTHLSAGELLR 39 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh-----CCeEEeHHHHHH
Confidence 47899999999999999999999877 356789998874
No 17
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.32 E-value=3.5e-07 Score=84.56 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=31.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.|++|+|.|++||||||+++.|+. + ...++.+|+++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l-----g~~~id~D~~~~ 39 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L-----GINVIDADIIAR 39 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T-----TCEEEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c-----CCEEEEccHHHH
Confidence 468999999999999999999976 4 357899999864
No 18
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.25 E-value=1.6e-05 Score=70.66 Aligned_cols=38 Identities=18% Similarity=0.036 Sum_probs=32.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.|.+|+|.|++||||||+|+.|+..+ ...++++|++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l-----~~~~i~~d~~~~ 42 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF-----GWVHLSAGDLLR 42 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEeeHHHHHH
Confidence 46799999999999999999999887 357889998764
No 19
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.24 E-value=2.1e-06 Score=80.88 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=35.0
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 226 KIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 226 ~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
....++.+|+|.|++||||||+++.|+..| .+..+.+|+++..
T Consensus 11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~~l-----g~~~~d~d~~~~~ 53 (236)
T 1q3t_A 11 DDKMKTIQIAIDGPASSGKSTVAKIIAKDF-----GFTYLDTGAMYRA 53 (236)
T ss_dssp ---CCCCEEEEECSSCSSHHHHHHHHHHHH-----CCEEEEHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHc-----CCceecCCCeeEc
Confidence 344667899999999999999999999877 3578999999863
No 20
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.23 E-value=5.3e-06 Score=80.14 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=34.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE 275 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~ 275 (476)
..|++|+|.|++||||||+++.|...| ....+..|.+|....
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~l-----g~~~~d~g~~~r~~~ 48 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARAL-----GARYLDTGAMYRIAT 48 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCCcHHHHHH
Confidence 357899999999999999999999888 357799999986543
No 21
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.97 E-value=4.1e-06 Score=79.92 Aligned_cols=155 Identities=18% Similarity=0.175 Sum_probs=84.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc----cCH-HHHHHHHHcccCCccccccCCCCCccHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY----LTA-EGQAKLREANRGNALLEFRGNAGSHDLQLS 304 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY----l~~-~er~~la~~~p~npLl~~rG~P~t~D~~lL 304 (476)
.-+.|||+|+.||||||+++.|+. + .+.+|..|..- .+. ....++.+.. +...+. .-|+.|...|
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~-----g~~vidaD~ia~~l~~~~~~~~~~i~~~f-G~~~~~---~dg~ldR~~L 77 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-R-----GASLVDTDLIAHRITAPAGLAMPAIEQTF-GPAFVA---ADGSLDRARM 77 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-T-----TCEEEEHHHHHHHHTSTTCTTHHHHHHHH-CGGGBC---TTSSBCHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-C-----CCcEEECcHHHHHHhcCCcHHHHHHHHHh-ChhhcC---CCCCCcHHHH
Confidence 457899999999999999999876 4 46789999743 222 1122222221 112232 2368998877
Q ss_pred HHHH-H---HhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHH
Q 044604 305 VETL-T---AISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETV 380 (476)
Q Consensus 305 ~e~L-~---~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~v 380 (476)
.+.+ . .++ .-+.+--|..-..... .. . ..+..++|+|.-.++-.
T Consensus 78 ~~~vF~d~~~~~----~L~~i~HP~I~~~~~~----~~------~-~~~~~~vv~d~pLL~E~----------------- 125 (210)
T 4i1u_A 78 RALIFSDEDARR----RLEAITHPLIRAETER----EA------R-DAQGPYVIFVVPLLVES----------------- 125 (210)
T ss_dssp HHHHHHCHHHHH----HHHHHHHHHHHHHHHH----HH------H-TCCSSSEEEECTTCTTC-----------------
T ss_pred HHHHhCCHHHHH----HHHHHhhHHHHHHHHH----HH------H-hcCCCEEEEEEeccccc-----------------
Confidence 6654 1 111 1123334432211100 00 0 01235788887554410
Q ss_pred hHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhH
Q 044604 381 NKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAY 444 (476)
Q Consensus 381 n~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Pay 444 (476)
..+..+ +|..|++.+ +++...+|-.+|+ |+|.+++.+.+..-+|..
T Consensus 126 -~~~~~~-------~D~vi~V~a-p~e~r~~Rl~~Rd---------g~s~eea~~ri~~Q~~~e 171 (210)
T 4i1u_A 126 -RNWKAR-------CDRVLVVDC-PVDTQIARVMQRN---------GFTREQVEAIIARQATRE 171 (210)
T ss_dssp -HHHHHH-------CSEEEEEEC-CHHHHHHHHHHHH---------CCCHHHHHHHHHHSCCHH
T ss_pred -CCcccc-------CCeEEEEEC-CHHHHHHHHHhcC---------CCCHHHHHHHHHHcCChH
Confidence 123333 455555655 4455444443332 899999988888877763
No 22
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.96 E-value=0.0002 Score=76.26 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=38.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
...|.+|.++|.+||||||+|+.|+..|...+..+.+|+.|++
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 3567899999999999999999999999877889999999985
No 23
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.93 E-value=5.3e-06 Score=73.79 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=36.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
+.+|.|.|++||||||+++.|+..|...|.+...+++|+++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r 44 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMF 44 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHH
Confidence 468999999999999999999999976666577888888865
No 24
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.85 E-value=9e-06 Score=74.19 Aligned_cols=39 Identities=18% Similarity=-0.010 Sum_probs=33.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
.+.+|+|.|++||||||+|+.|...+ ...+|+.|+++..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l-----g~~~i~~d~~~~~ 55 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC-----GYPFIEGDALHPP 55 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH-----TCCEEEGGGGCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-----CCEEEeCCcCcch
Confidence 46789999999999999999999888 3568999999854
No 25
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.85 E-value=9.6e-06 Score=72.07 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=34.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.+|.|.|++||||||+|+.|+..|...|..+..++.|+++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 3789999999999999999999998777778888777765
No 26
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.83 E-value=9.4e-06 Score=74.76 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=33.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA 274 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~ 274 (476)
+.+|||.|++||||||+++.|...+ .+..+.+|++|...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~-----g~~~~d~g~i~~~~ 43 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL-----QWHLLDSGAIYRVL 43 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCcceeehh
Confidence 4689999999999999999999887 35778999998643
No 27
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.83 E-value=6.8e-06 Score=74.09 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=33.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
.+|.+|+|+|++||||||+++.|+.. | +.++.+|+++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~----g--~~~id~d~~~~~ 44 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW----G--YPVLDLDALAAR 44 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT----T--CCEEEHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC----C--CEEEcccHHHHH
Confidence 46899999999999999999998875 3 568999999853
No 28
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.81 E-value=9.7e-06 Score=71.91 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=31.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
|.+|.|+|++||||||+++.|+..| +.....+++|+|.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~~~ 40 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSLI 40 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccchHh
Confidence 4689999999999999999999887 3456667899875
No 29
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.80 E-value=2e-05 Score=72.80 Aligned_cols=40 Identities=18% Similarity=0.004 Sum_probs=35.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
+..+|+|+|++|||||||+..|...|...|.+|.+|..|.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 3568999999999999999999999988899999998875
No 30
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.76 E-value=1.2e-05 Score=72.28 Aligned_cols=38 Identities=18% Similarity=0.074 Sum_probs=33.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.|.+|+|.|++||||||+|+.|+..+ ....+++|+++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l-----~~~~i~~d~~~~ 48 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY-----GFTHLSTGELLR 48 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH-----TCEEEEHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh-----CCeEEcHHHHHH
Confidence 35689999999999999999999988 367899999875
No 31
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.75 E-value=1.4e-05 Score=72.62 Aligned_cols=40 Identities=20% Similarity=0.003 Sum_probs=33.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
+.++.+|+|.|++||||||+|+.|...+ ....|++|+++.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~-----g~~~i~~d~~~~ 51 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY-----SFVHLSAGDLLR 51 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS-----SCEEEEHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc-----CceEEeHHHHHH
Confidence 4567899999999999999999998776 357899998764
No 32
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.74 E-value=2.4e-05 Score=71.60 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=34.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.++.+|+|.|++||||||+++.|...+...|.-+..+..|++.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence 3568999999999999999999999997556544456666654
No 33
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.74 E-value=1.9e-05 Score=69.04 Aligned_cols=35 Identities=31% Similarity=0.337 Sum_probs=30.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
+|+|.|++||||||+++.|+..+ ....+..|.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l-----~~~~i~~d~~~~ 37 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL-----KYPIIKGSSFEL 37 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH-----CCCEEECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCeeecCccccc
Confidence 79999999999999999999887 356789998753
No 34
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.72 E-value=1.3e-05 Score=69.34 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=28.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.+|+|.|++||||||+|+.| ..+ | ..++++|+++.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~---g--~~~i~~~~~~~ 36 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER---G--AKVIVMSDVVR 36 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT---T--CEEEEHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC---C--CcEEEHhHHHH
Confidence 47999999999999999999 443 3 45788888775
No 35
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.72 E-value=3e-05 Score=69.76 Aligned_cols=42 Identities=24% Similarity=0.187 Sum_probs=36.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
.++.+|.|.|.+||||||+++.|...|...|.++.++..|.+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 356899999999999999999999999887888877776654
No 36
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.71 E-value=2.6e-05 Score=74.88 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=34.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
++.+|.|.|++||||||+|+.|+..|...|..+.+++.|.+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 36789999999999999999999998877877766777765
No 37
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.71 E-value=1.7e-05 Score=71.04 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=33.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
++.+|+|.|++||||||+|+.|+..| ....+++|+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l-----~~~~i~~d~~~~~ 46 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY-----GYTHLSTGDLLRS 46 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh-----CCeEEcHHHHHHH
Confidence 46789999999999999999999887 3568899987753
No 38
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.68 E-value=1.9e-05 Score=71.35 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=32.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA 274 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~ 274 (476)
+|+|+|++||||||+++.|+..| .+.++.+|+++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l-----g~~~~d~d~~~~~~ 40 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL-----GVPYLSSGLLYRAA 40 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----TCCEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-----CCceeccchHHHhh
Confidence 89999999999999999999887 36789999998643
No 39
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.68 E-value=1.7e-05 Score=69.91 Aligned_cols=36 Identities=25% Similarity=0.085 Sum_probs=29.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
|.+|.|.|++||||||+|+.|+.. .....+|++|.+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d~~ 37 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDDY 37 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHHHH
Confidence 678999999999999999999872 125678888765
No 40
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.68 E-value=1.3e-05 Score=73.09 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=30.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
+++|||.|++||||||+++.|+. + | ..++.+|+++.
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-l---g--~~~id~d~~~~ 37 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-L---G--VPLVDADVVAR 37 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-T---T--CCEEEHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-C---C--CcccchHHHHH
Confidence 36899999999999999999976 3 3 56789999874
No 41
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.67 E-value=2.4e-05 Score=71.31 Aligned_cols=42 Identities=21% Similarity=0.187 Sum_probs=34.6
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 226 KIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 226 ~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.....|.+|+|.|++||||||+|+.|+..+. ..+|++|++..
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La~~l~-----~~~i~~d~~~r 56 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLG-----IPQISTGELFR 56 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHHHHHT-----CCEEEHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHhC-----CcEEehhHHHH
Confidence 3456788999999999999999999998873 45789998764
No 42
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.65 E-value=1.6e-05 Score=72.28 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=30.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.+|||+|++||||||+++.|+. + .+.++.+|+++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~-----g~~~i~~d~~~~ 36 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L-----GAYVLDADKLIH 36 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T-----TCEEEEHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C-----CCEEEEccHHHH
Confidence 3799999999999999999988 5 478899999874
No 43
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.64 E-value=4.3e-05 Score=69.41 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=30.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI 265 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI 265 (476)
+|.+|+|.|++||||||+++.|+..|...|..+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 467999999999999999999999998777766443
No 44
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.64 E-value=5.7e-05 Score=67.02 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=32.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
...+|+|.|++||||||+++.|...+ ....+..|++..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~~~ 44 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHP 44 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGCC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccccc
Confidence 35689999999999999999999887 357889998864
No 45
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.63 E-value=1.8e-05 Score=70.88 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=30.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.+|+|.|++||||||+|+.|+..|. +.+|++|+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg-----~~~id~D~~~~ 38 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG-----VGLLDTDVAIE 38 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT-----CCEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC-----CCEEeCchHHH
Confidence 3699999999999999999999883 46789998853
No 46
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.63 E-value=2.8e-05 Score=71.92 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=33.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
+++.+|.|.|++||||||+|+.|+..| ....|++|+++.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~~~~ 40 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF-----HAAHLATGDMLR 40 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc-----CceEEehhHHHH
Confidence 356789999999999999999999887 357899999875
No 47
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.62 E-value=3.2e-05 Score=68.96 Aligned_cols=38 Identities=26% Similarity=0.190 Sum_probs=32.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
++.+|+|.|++||||||+++.|+..+ ....+++|+...
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l-----~~~~i~~d~~~~ 40 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL-----GFKKLSTGDILR 40 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH-----TCEEECHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-----CCeEecHHHHHH
Confidence 46789999999999999999999877 356788888764
No 48
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.62 E-value=2.9e-05 Score=69.36 Aligned_cols=37 Identities=30% Similarity=0.173 Sum_probs=31.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.|.+|.|.|++||||||+++.|+..| | ..+++.|++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l---~--~~~i~~D~~~ 40 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL---R--LPLLSKDAFK 40 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---T--CCEEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc---C--CeEecHHHHH
Confidence 57899999999999999999999887 2 4568888773
No 49
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.62 E-value=2.1e-05 Score=69.33 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=29.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+.+|+|.|++||||||+++.|...+. ...+..|++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~-----~~~id~d~~~ 39 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN-----MEFYDSDQEI 39 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT-----CEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEeccHHH
Confidence 35799999999999999999998873 4567777654
No 50
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.62 E-value=0.00011 Score=76.98 Aligned_cols=44 Identities=30% Similarity=0.344 Sum_probs=40.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.+|.+|+++|++||||||++..|...|...|.+|.++..|-|-.
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~ 138 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP 138 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence 35899999999999999999999999998899999999997654
No 51
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.61 E-value=6e-05 Score=68.96 Aligned_cols=39 Identities=23% Similarity=0.164 Sum_probs=33.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
++.+|+|.|++||||||+++.|...+ ....+..|++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~ 66 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSP 66 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccH
Confidence 45689999999999999999999887 3577889998743
No 52
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.58 E-value=5.2e-05 Score=68.84 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=31.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS 266 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS 266 (476)
++.+|+|.|++||||||+++.|+..|...+..+.++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4679999999999999999999999987777765444
No 53
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.57 E-value=3.9e-05 Score=73.03 Aligned_cols=39 Identities=23% Similarity=0.161 Sum_probs=33.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.+|++|+|.|++||||||+|+.|...+ ....|++|+...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~-----g~~~is~~~~~r 65 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH-----CYCHLSTGDLLR 65 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEecHHHHH
Confidence 468999999999999999999998877 467889988764
No 54
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.55 E-value=6.7e-05 Score=67.21 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=27.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeE
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSA 263 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~ 263 (476)
+|+|.|+.||||||+++.|...|...|..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 7999999999999999999999987777653
No 55
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.55 E-value=5.7e-05 Score=72.55 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=30.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.+|.|+|++||||||+|+.|+..+ ...+|++|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~-----~~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET-----GWPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-----CCCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC-----CCeEEeccHHh
Confidence 378999999999999999999887 35789999975
No 56
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.54 E-value=0.00015 Score=73.11 Aligned_cols=48 Identities=25% Similarity=0.182 Sum_probs=41.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEG 276 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~e 276 (476)
.+|.+|+|.|++||||||+++.|..++...+.+|.+...|-|-....+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~e 174 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIE 174 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHH
Confidence 568999999999999999999999999888889999999877665443
No 57
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.54 E-value=9.5e-05 Score=73.85 Aligned_cols=43 Identities=28% Similarity=0.296 Sum_probs=38.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.+|.+|+|.|++||||||++..|+..+...|.+|.++..|-|-
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 4678999999999999999999999998888899999999764
No 58
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.52 E-value=8.2e-05 Score=66.49 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=29.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI 265 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI 265 (476)
++.+|+|.|++||||||+++.|...|...|..+..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 467899999999999999999999987656655444
No 59
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.51 E-value=0.0001 Score=77.53 Aligned_cols=43 Identities=26% Similarity=0.227 Sum_probs=40.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
+|.+|.|+|++||||||++..|...|...|.+|.++..|-|..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 5899999999999999999999999988899999999998764
No 60
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.51 E-value=2.1e-05 Score=71.67 Aligned_cols=39 Identities=33% Similarity=0.482 Sum_probs=33.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+|+|.|++||||||+++.|...|...|..+.++..++|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~ 40 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYG 40 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCC
Confidence 799999999999999999999998767777777666654
No 61
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.51 E-value=4.6e-05 Score=68.06 Aligned_cols=36 Identities=25% Similarity=0.140 Sum_probs=30.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+.+|.|.|++||||||+|+.|+..| ....+++|++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l-----~~~~i~~d~~~ 40 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT-----KRILYDSDKEI 40 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH-----CCCEEEHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-----CCCEEEChHHH
Confidence 4578899999999999999999888 35678889884
No 62
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.50 E-value=4.6e-05 Score=67.02 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=30.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.+|+|.|++||||||+|+.|+..|. ..++.+|+++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg-----~~~id~d~~~ 37 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG-----YEFVDTDIFM 37 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT-----CEEEEHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-----CcEEcccHHH
Confidence 3699999999999999999999883 5678899875
No 63
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.50 E-value=0.00016 Score=73.38 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=47.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc--cc--------C-HHHHHHHHHcccCCccccccCCCCCc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF--YL--------T-AEGQAKLREANRGNALLEFRGNAGSH 299 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF--Yl--------~-~~er~~la~~~p~npLl~~rG~P~t~ 299 (476)
+.+|.|+||+||||||||..|+..+ ...+|+.|.+ |+ | .+++. .-|. -+++..++-+.|
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~QvYr~~~igTakp~~~E~~----gvph-hlid~~~~~e~~ 72 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDSMQVYRGMDIGTAKITAEEMD----GVPH-HLIDIKDPSESF 72 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCGGGGBTTCCTTTTCCCHHHHT----TCCE-ESSSCBCTTSCC
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCcccceeeeeecCCCCCHHHHc----CCCE-EEeccCChhhhc
Confidence 4688999999999999999998776 4689999998 63 2 22222 1222 256666667788
Q ss_pred cHHHHHHH
Q 044604 300 DLQLSVET 307 (476)
Q Consensus 300 D~~lL~e~ 307 (476)
+...+.+.
T Consensus 73 s~~~F~~~ 80 (322)
T 3exa_A 73 SVADFQDL 80 (322)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 88655443
No 64
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.48 E-value=8e-05 Score=68.70 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=34.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCCeEEEecccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFR-VTGRKSATISIDDF 270 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~-~~G~~v~vISlDDF 270 (476)
..+.+|.|.|++||||||+++.|...|. ..|..+..+..|.+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 3467899999999999999999999997 56777777766655
No 65
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.48 E-value=5.1e-05 Score=69.37 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=30.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
..+|+|.|++||||||+++.|+..+ ....+.+|++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l-----~~~~i~~d~~~ 60 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL-----NVPFIDLDWYI 60 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH-----TCCEEEHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc-----CCCEEcchHHH
Confidence 3589999999999999999999888 34578899876
No 66
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.48 E-value=4.8e-05 Score=69.78 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=30.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
.|+|.|++||||||+|+.|+..+ ...++++|++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d~~~r~ 37 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY-----EIPHISTGDMFRA 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEeeHHHHHHH
Confidence 58999999999999999998877 3567999988753
No 67
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.48 E-value=5.4e-05 Score=67.80 Aligned_cols=39 Identities=31% Similarity=0.318 Sum_probs=30.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+..+|+|.|++||||||+++.|...+ +...+.+..|++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDLW 46 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccchh
Confidence 35689999999999999999998763 3445667777764
No 68
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.45 E-value=0.00011 Score=65.29 Aligned_cols=35 Identities=29% Similarity=0.289 Sum_probs=29.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
+|+|.|++||||||+|+.|+..|...|.. ++++|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~--~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYF--VSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCC--EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe--EEEEeC
Confidence 79999999999999999999998765654 456664
No 69
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.45 E-value=4.5e-05 Score=71.07 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=33.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
++.+|.|.|++||||||+|+.|+..+ ....|++|+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~~~~~ 44 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF-----ELKHLSSGDLLRD 44 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS-----SSEEEEHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc-----CCeEEechHHHHH
Confidence 46789999999999999999998876 3578999998764
No 70
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.44 E-value=6.6e-05 Score=65.85 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=29.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+|+|.|++||||||+|+.|+..|. ..++.+|++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~-----~~~i~~d~~~ 35 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN-----IPFYDVDEEV 35 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT-----CCEEEHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-----CCEEECcHHH
Confidence 699999999999999999999873 4578999886
No 71
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.43 E-value=0.00012 Score=72.45 Aligned_cols=45 Identities=29% Similarity=0.303 Sum_probs=39.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCCeEEEeccccccCH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRV-TGRKSATISIDDFYLTA 274 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~-~G~~v~vISlDDFYl~~ 274 (476)
++.+|+|.|++||||||++..|...+.. .|.+|.++..|-|-...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a 149 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAA 149 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchH
Confidence 4679999999999999999999999985 68899999999875443
No 72
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.43 E-value=6.9e-05 Score=66.17 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=30.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.+|+|.|+.||||||+|+.|+..|. ..++.+|++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg-----~~~id~D~~~ 42 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK-----LEVLDTDMII 42 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT-----CCEEEHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEChHHH
Confidence 4899999999999999999998883 4568888876
No 73
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.43 E-value=6.4e-05 Score=66.93 Aligned_cols=35 Identities=31% Similarity=0.215 Sum_probs=30.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
+|.|.|++||||||+|+.|+..| ....+.+|+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l-----~~~~~d~d~~~~ 40 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL-----DLVFLDSDFLIE 40 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH-----TCEEEEHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-----CCCEEcccHHHH
Confidence 58899999999999999999888 356788998863
No 74
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.42 E-value=7.7e-05 Score=68.39 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=32.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.+|+|.|++|||||||++.|..++...|.++..|..|+-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 3799999999999999999999998877778888888754
No 75
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.42 E-value=6.8e-05 Score=66.92 Aligned_cols=38 Identities=26% Similarity=0.164 Sum_probs=31.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.+.+|.|.|++||||||+++.|...+ ....+++|+++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~-----~~~~~~~d~~~~ 47 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS-----GLKYINVGDLAR 47 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh-----CCeEEEHHHHHh
Confidence 34578899999999999999999887 356788887653
No 76
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.42 E-value=7.2e-05 Score=73.45 Aligned_cols=42 Identities=21% Similarity=0.076 Sum_probs=34.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
..|.+|.|+|++||||||+|+.|...+. .....|+.|.|...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R~~ 72 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQQ 72 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhHHh
Confidence 4688999999999999999999987652 24678899988754
No 77
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.41 E-value=8.1e-05 Score=67.35 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=31.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH-HHHcCCCeEEEeccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYL-FRVTGRKSATISIDDFY 271 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~l-L~~~G~~v~vISlDDFY 271 (476)
++.+|+|.|++||||||+++.|+.. + ...++.+|++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~-----g~~~id~d~~~ 46 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELD-----GFQHLEVGKLV 46 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST-----TEEEEEHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCEEeeHHHHH
Confidence 4568999999999999999999987 4 46778988875
No 78
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.41 E-value=0.00016 Score=66.50 Aligned_cols=39 Identities=28% Similarity=0.229 Sum_probs=34.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
..+|+|+|++|||||||++.|...+...|.++.++..|.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 457899999999999999999988888888888888764
No 79
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.40 E-value=0.00014 Score=72.45 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=38.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
++-+|+|.|++|||||||++.|..++...+.+|.+...|-|-..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~ 144 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAA 144 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChh
Confidence 57799999999999999999999999877778888888866543
No 80
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.40 E-value=8.6e-05 Score=70.88 Aligned_cols=42 Identities=24% Similarity=0.140 Sum_probs=34.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
...|.+|.|.|++||||||+|+.|...+. ..+.++..|.|-.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFRS 70 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGGT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHHH
Confidence 35688999999999999999999998773 3567788888853
No 81
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.40 E-value=5e-05 Score=69.76 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=30.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
.|+|.|++||||||+|+.|+..+ ...+|++|+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d~~~r~ 37 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-----GIPHISTGDMFRA 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-----SCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHHHHHHH
Confidence 58999999999999999998766 4568999988753
No 82
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.39 E-value=0.00017 Score=71.62 Aligned_cols=44 Identities=25% Similarity=0.085 Sum_probs=37.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.++-+|+|.|++||||||+++.|..++...+.+|.+...|-|-.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~ 141 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRA 141 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccch
Confidence 45789999999999999999999999987777888888776543
No 83
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.39 E-value=0.00014 Score=65.51 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=26.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTG 259 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G 259 (476)
++.+|.|.|++||||||+|+.|+..|...|
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 357899999999999999999999986545
No 84
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.39 E-value=0.00065 Score=68.67 Aligned_cols=69 Identities=25% Similarity=0.192 Sum_probs=49.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc--cc---------CHHHHHHHHHcccCCccccccCCCC
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF--YL---------TAEGQAKLREANRGNALLEFRGNAG 297 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF--Yl---------~~~er~~la~~~p~npLl~~rG~P~ 297 (476)
..|.+|.|+||+||||||||..|+..+ ...+|+.|.+ |+ +.+|+.. -|. -+++..++-+
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~qvY~~~~igTakp~~~E~~~----v~h-hlid~~~~~e 77 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDSALIYKGMDIGTAKPNAEELLA----APH-RLLDIRDPSQ 77 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCTTTTBTTCCTTTTCCCHHHHHH----SCE-ETSSCBCTTS
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEecccccccccccccCCCCCHHHHcC----CCE-EEeccCCccc
Confidence 457789999999999999999998876 4789999985 52 1233332 222 2566667777
Q ss_pred CccHHHHHHH
Q 044604 298 SHDLQLSVET 307 (476)
Q Consensus 298 t~D~~lL~e~ 307 (476)
.|+...+.+.
T Consensus 78 ~~s~~~f~~~ 87 (316)
T 3foz_A 78 AYSAADFRRD 87 (316)
T ss_dssp CCCHHHHHHH
T ss_pred cccHHHHHHH
Confidence 8888765544
No 85
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.34 E-value=0.00022 Score=66.43 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=23.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
..||.|+|+.||||||+++.|+..|
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999988
No 86
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.32 E-value=8e-05 Score=68.40 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=33.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
|++|+|+|++||||||+++.|+..+ ....+.+|++|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~-----g~~~~~~d~~~~~ 40 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL-----SMIYVDTGAMYRA 40 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT-----TCEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc-----CCceecCChHHHH
Confidence 6789999999999999999998876 3578999999864
No 87
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.30 E-value=7.8e-05 Score=69.03 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=33.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
+|.+|.|.|++||||||+++.|+..|. ...+++|+++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~-----~~~i~~d~~~~~ 42 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ-----LAHISAGDLLRA 42 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC-----CEECCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CceecHHHHHHH
Confidence 467899999999999999999998883 467888888754
No 88
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.30 E-value=0.00025 Score=72.55 Aligned_cols=43 Identities=26% Similarity=0.096 Sum_probs=37.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.++-+|+|.|++|||||||++.|..++...+.+|.+...|-|-
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 4678999999999999999999999998777788888887654
No 89
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.29 E-value=0.0002 Score=74.65 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=49.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc--cccCH---------HHHHHHHHcccCCccccccCCCCCc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD--FYLTA---------EGQAKLREANRGNALLEFRGNAGSH 299 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD--FYl~~---------~er~~la~~~p~npLl~~rG~P~t~ 299 (476)
+.+|+|+||+||||||||..|...+. ..+|+.|+ +|..- +++. .-|. -+++..++-+.|
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds~QvYr~l~i~T~kp~~~E~~----gv~h-hlid~~~~~~~~ 71 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDSMQVYKDIPIITNKHPLQERE----GIPH-HVMNHVDWSEEY 71 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCTTTTBSSCTTTTTCCCGGGTT----TCCE-ESCSCBCTTSCC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCccceecccccccCCCCHHHHc----Cchh-hcCCccChHhHh
Confidence 45899999999999999999998883 57899999 67422 1111 1122 245555556677
Q ss_pred cHHHHHHH-HHHhhhhhcCCc
Q 044604 300 DLQLSVET-LTAISKLTKEGT 319 (476)
Q Consensus 300 D~~lL~e~-L~~Lk~~~k~G~ 319 (476)
+...+.+. ...|.+....|+
T Consensus 72 s~~~F~~~a~~~i~~i~~~g~ 92 (409)
T 3eph_A 72 YSHRFETECMNAIEDIHRRGK 92 (409)
T ss_dssp CHHHHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCC
Confidence 77655433 333333224554
No 90
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.29 E-value=0.00028 Score=70.75 Aligned_cols=43 Identities=21% Similarity=0.164 Sum_probs=38.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.++.+|+|.|++|+||||++..|...+...|.+|.++..|-|-
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 4678999999999999999999999998889999999998653
No 91
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.26 E-value=0.00011 Score=68.06 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=32.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
...|.|.|++||||||+|+.|+..| ...+|++|++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~li~ 41 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY-----GLAHLSTGDMLR 41 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-----CceEEehhHHHH
Confidence 4678999999999999999999888 357899999875
No 92
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.25 E-value=0.00017 Score=67.67 Aligned_cols=39 Identities=23% Similarity=0.146 Sum_probs=33.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
..+..|.|.|++||||||+|+.|+..| .+..|++|+++.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~li~ 52 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF-----CVCHLATGDMLR 52 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-----CCceecHHHHHH
Confidence 456789999999999999999999888 357899998864
No 93
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.25 E-value=0.00032 Score=73.26 Aligned_cols=45 Identities=27% Similarity=0.241 Sum_probs=40.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCCeEEEeccccccC
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVT-GRKSATISIDDFYLT 273 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-G~~v~vISlDDFYl~ 273 (476)
.+|.+|.|+|.+|+||||++..|+..|... |.+|.++..|-|-..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~ 143 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA 143 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 468899999999999999999999999988 999999999976543
No 94
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.24 E-value=0.00011 Score=66.18 Aligned_cols=26 Identities=27% Similarity=0.140 Sum_probs=23.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
++.+|||.|++||||||+++.|...+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998776
No 95
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.22 E-value=0.00025 Score=71.80 Aligned_cols=37 Identities=32% Similarity=0.261 Sum_probs=32.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.+.+|.|+|++||||||+|..|+..+ ...+|+.|++.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds~q 40 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDSAL 40 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccchh
Confidence 35689999999999999999999877 47899999984
No 96
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.22 E-value=0.00019 Score=64.84 Aligned_cols=25 Identities=40% Similarity=0.357 Sum_probs=22.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
..+|||.||+|||||||++.|..++
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998875
No 97
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.21 E-value=0.00033 Score=74.84 Aligned_cols=43 Identities=26% Similarity=0.213 Sum_probs=37.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.++.||+|.|++|||||||++.|..++...+.+|.+...|-|-
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 4678999999999999999999999998777788777788764
No 98
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.20 E-value=0.00016 Score=69.10 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=30.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
..+|+|.|++||||||+++.|...|. ...+..|..|
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg-----~~~~d~g~i~ 62 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN-----WRLLDSGAIY 62 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT-----CEEEEHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC-----CCcCCCCcee
Confidence 46899999999999999999998872 4556777776
No 99
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.18 E-value=0.0004 Score=69.83 Aligned_cols=40 Identities=25% Similarity=0.323 Sum_probs=36.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
..+++|+|+|.+|+|||||+..|...+...|.+|.++..|
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 3578999999999999999999999887779999999988
No 100
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.18 E-value=0.00037 Score=74.31 Aligned_cols=43 Identities=35% Similarity=0.395 Sum_probs=37.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.+|.+|+|+|.+||||||++..|...|...|.+|.+++.|-|-
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 4688999999999999999999999998889999999988754
No 101
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.17 E-value=0.00017 Score=64.88 Aligned_cols=36 Identities=28% Similarity=0.216 Sum_probs=28.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.+|+|.|++||||||+++.|...+ + ..+.+..|+|.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~---~-g~~~i~~d~~~ 38 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL---D-NSAYIEGDIIN 38 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS---S-SEEEEEHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhccc---C-CeEEEcccchh
Confidence 489999999999999999997633 1 23567777764
No 102
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.17 E-value=0.00013 Score=66.11 Aligned_cols=25 Identities=36% Similarity=0.337 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
.+|||.||+|||||||++.|..++.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999998875
No 103
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.16 E-value=0.00042 Score=62.93 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=32.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
-+++|.|++|||||||++.|...+...+.+|..++.+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 48999999999999999999977766677888888765
No 104
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.16 E-value=0.00017 Score=75.38 Aligned_cols=43 Identities=33% Similarity=0.272 Sum_probs=38.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
..|.+|+|+|++|+||||++..|...+...|.+|.++..|-|.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 3578999999999999999999999998889999999999764
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.16 E-value=0.00024 Score=63.53 Aligned_cols=40 Identities=25% Similarity=0.205 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCCeEEEecccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFR-VTGRKSATISIDDF 270 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~-~~G~~v~vISlDDF 270 (476)
...|+|.|++|+|||||++.|...+. ..|..+..++.+++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 34789999999999999999998886 45766666555444
No 106
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.16 E-value=0.00021 Score=66.75 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=30.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
+|.|.|++||||||+|+.|+..+ | ..+|++|++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l---g--~~~i~~dd~~r 36 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY---S--LAHIESGGIFR 36 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEEchHHHHH
Confidence 68999999999999999999887 2 46799998874
No 107
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.14 E-value=0.0002 Score=64.66 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=22.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
..+|+|.||+|||||||++.|...+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999988763
No 108
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.14 E-value=0.00061 Score=63.90 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=36.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.++.++.+.|..|+||||++..|...|. .|.+|.+|..|-
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 5678999999999999999999999998 899999999883
No 109
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.12 E-value=0.00019 Score=66.23 Aligned_cols=35 Identities=26% Similarity=0.169 Sum_probs=30.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.|+|.|++||||||+|+.|+..+ | ..+|++|++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---g--~~~i~~d~~~r 36 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY---G--IPQISTGDMLR 36 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---C--CCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEEeHHHHHH
Confidence 58999999999999999999877 3 46789998874
No 110
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.11 E-value=0.00024 Score=64.03 Aligned_cols=26 Identities=23% Similarity=0.111 Sum_probs=23.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
++.+|+|.|++||||||+++.|+..|
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999877
No 111
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.10 E-value=0.00025 Score=68.31 Aligned_cols=37 Identities=24% Similarity=0.035 Sum_probs=30.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
|.+|.|.|++||||||+|+.|...+ ....+|++|.|.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r 38 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYR 38 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHH
Confidence 5789999999999999999998753 246788998653
No 112
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.08 E-value=0.0002 Score=65.70 Aligned_cols=27 Identities=26% Similarity=0.167 Sum_probs=23.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
.++.+|+|+|++||||||+++.|...+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 356789999999999999999998876
No 113
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.08 E-value=0.00015 Score=64.32 Aligned_cols=26 Identities=31% Similarity=0.248 Sum_probs=19.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
+|.+|.|.|++||||||+|+.|+..|
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56799999999999999999998876
No 114
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.06 E-value=0.00063 Score=67.12 Aligned_cols=42 Identities=26% Similarity=0.262 Sum_probs=37.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
++.+|+|.|++|+||||++..|...+...|.+|.++..|-+-
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 578999999999999999999999998888899999888653
No 115
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.05 E-value=0.00023 Score=65.77 Aligned_cols=27 Identities=30% Similarity=0.161 Sum_probs=23.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
++.+|+|.||+||||||+++.|...+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999987763
No 116
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.02 E-value=0.00047 Score=61.23 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=33.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
-+++|.|++|+|||||++.|...+...|.++..+...++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~ 77 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPL 77 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhH
Confidence 37889999999999999999998876676777777666553
No 117
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.99 E-value=0.00077 Score=62.26 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=29.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCCeEEEeccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFR-VTGRKSATISIDD 269 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~-~~G~~v~vISlDD 269 (476)
.-+++|.|++|||||||++.|..... ..+..+..+..+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 34899999999999999999884322 3355666666654
No 118
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.98 E-value=0.00043 Score=61.95 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=22.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+|+|.|++||||||+++.|+..|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999884
No 119
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.98 E-value=0.00074 Score=70.58 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=38.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
+|.+|+|+|++||||||++..|...+...|.+|.++..|- +.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~-~r~ 139 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT-QRP 139 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS-SCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc-cCc
Confidence 6789999999999999999999999988889999999864 444
No 120
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.97 E-value=0.00059 Score=67.60 Aligned_cols=41 Identities=32% Similarity=0.404 Sum_probs=37.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+.+|+|.|++|+||||++..|...+...|.+|.++..|-|-
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 78999999999999999999999998889999999988754
No 121
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.97 E-value=0.00042 Score=65.35 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=29.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
+|.+|+|.|++||||||+++.|...+ |. ..++.|+.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l---g~--~~~~~G~i~~ 63 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF---GL--QHLSSGHFLR 63 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH---CC--CCEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh---CC--eEecHHHHHH
Confidence 47899999999999999999999877 32 2345555543
No 122
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.94 E-value=0.00047 Score=70.31 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=32.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
++.+|.|+||+|||||||+..|+..| ...+|+.|..-
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~q 75 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKMQ 75 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSST
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC-----CCcEEcccccc
Confidence 45688999999999999999998876 57899999983
No 123
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.92 E-value=0.00094 Score=60.71 Aligned_cols=41 Identities=22% Similarity=0.052 Sum_probs=34.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
..|.|.|++|+||||+++.+...+...+..+..++.+++..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~ 93 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS 93 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 45779999999999999999999887778888888877653
No 124
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.87 E-value=0.00072 Score=64.43 Aligned_cols=41 Identities=22% Similarity=0.045 Sum_probs=34.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 227 IYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 227 ~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.-++|.||.|.||+||||+|.|+.|+..+ ....||+.|.+.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~-----g~~hIstGdllR 65 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSGDLLR 65 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH-----CCEEECHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH-----CCceEcHHHHHH
Confidence 34668899999999999999999999887 467788888764
No 125
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.87 E-value=0.00046 Score=63.47 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=23.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
.-++||.|++|||||||.+.|..++.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999998873
No 126
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.86 E-value=0.00047 Score=63.43 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
.+|+|.||+|||||||.+.|...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999988774
No 127
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.86 E-value=0.00041 Score=71.53 Aligned_cols=38 Identities=13% Similarity=-0.079 Sum_probs=32.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
...|.+|.|+|++||||||+|+.|...+ ....|+.|++
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~ 292 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTL 292 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchH
Confidence 3467899999999999999999988765 4678899987
No 128
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.82 E-value=0.00088 Score=72.32 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=36.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcC-CCeEEEecccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTG-RKSATISIDDF 270 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G-~~v~vISlDDF 270 (476)
.++.+|.|.|.+||||||+|+.|+..|...| ..+..+..|.+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 4578999999999999999999999998766 77777777764
No 129
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.81 E-value=0.0014 Score=65.88 Aligned_cols=40 Identities=30% Similarity=0.420 Sum_probs=34.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
...+|||.|++|||||||.+.|..++...+.++.++..|-
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 93 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcC
Confidence 4579999999999999999999999877777888887764
No 130
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.81 E-value=0.0014 Score=66.10 Aligned_cols=41 Identities=24% Similarity=0.438 Sum_probs=35.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
...+|||.|++|||||||.+.|...+...+.++.++..|-+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 46799999999999999999999888777788999988744
No 131
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.81 E-value=0.0012 Score=66.01 Aligned_cols=42 Identities=29% Similarity=0.336 Sum_probs=36.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
.+..+|||.|++|+|||||+..|...+...|.++.++..|-+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 356799999999999999999999999877889998887754
No 132
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.80 E-value=0.0013 Score=62.40 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=29.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeE
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSA 263 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~ 263 (476)
.+..+|.|.|++||||||+++.|...|.. |..+.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 45689999999999999999999999976 66553
No 133
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.80 E-value=0.00089 Score=60.58 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=31.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
..|.|.|++|+||||||+.|...+...|..+..++..++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 567799999999999999999988766777776766543
No 134
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.79 E-value=0.00063 Score=63.09 Aligned_cols=35 Identities=31% Similarity=0.632 Sum_probs=28.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
+|||.|++|||||||.+.|..++...| |..|+|+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G-----i~~~g~~~ 37 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG-----VPVDGFYT 37 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT-----CCCEEEEC
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC-----EEEcCEec
Confidence 689999999999999999999987434 45577665
No 135
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.79 E-value=0.0013 Score=60.50 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=31.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
-+++|.|++|||||||+..+...+...|.+|..++++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 48999999999999999877766655677888888876
No 136
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.76 E-value=0.0013 Score=63.61 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=32.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHc-CCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVT-GRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~-G~~v~vISlDD 269 (476)
-+++|.|++|||||||+..|...+... |.+|..++.+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 489999999999999999999888765 66787887764
No 137
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.75 E-value=0.0012 Score=59.96 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=30.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.-+++|.|++|||||||+..|.. ..|.+|..++.+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 34899999999999999999887 3467888888876
No 138
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.74 E-value=0.00047 Score=64.28 Aligned_cols=25 Identities=40% Similarity=0.426 Sum_probs=16.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH-HHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALD-YLF 255 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~-~lL 255 (476)
..+|||.||+||||||+++.|. .++
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999999999999998 776
No 139
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.74 E-value=0.00098 Score=71.50 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=36.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
+.+.+|.|.|.+||||||+|+.|+..|...|..+.++..|.+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 356899999999999999999999999887888888887754
No 140
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.72 E-value=0.0016 Score=61.42 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=31.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI 265 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI 265 (476)
+..+|.|.|+.||||||+++.|...|...|..|.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 457899999999999999999999998888877544
No 141
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.69 E-value=0.0012 Score=59.32 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFAL 251 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L 251 (476)
.-+++|.|++|||||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999973
No 142
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.69 E-value=0.0019 Score=62.66 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=37.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
..+.+|+|+|-.|+||||+|..|+..|.+.|.+|.+|-+|-
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45678999999999999999999999999999999999994
No 143
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.67 E-value=0.001 Score=60.81 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=22.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
.|||.|++|||||||.+.|..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999884
No 144
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.67 E-value=0.0015 Score=62.96 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=29.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCe
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKS 262 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v 262 (476)
.++.+|.|.|++||||||+++.|...|...|..+
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~ 58 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDH 58 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCe
Confidence 4567899999999999999999999998888873
No 145
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.66 E-value=0.00066 Score=63.48 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
.-+|||.||+|||||||.+.|..++
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3489999999999999999999876
No 146
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.63 E-value=0.0017 Score=63.05 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=24.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVT 258 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~ 258 (476)
-+|+|.||+|||||||.+.|..++...
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 489999999999999999999988653
No 147
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.62 E-value=0.001 Score=62.35 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=28.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
.+..+|+|.|++||||||+++.|... +..+.+...+
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 45789999999999999999988766 4456665554
No 148
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.61 E-value=0.0012 Score=60.12 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
--+++|.|++|||||||++.|...+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999987653
No 149
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.60 E-value=0.0014 Score=60.41 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=34.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.|+|+|-.|+||||+|..|+..|.+.|.+|.+|-+|-
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3778999999999999999999998899999999985
No 150
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.58 E-value=0.001 Score=64.52 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=29.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.+|+|.|++||||||+++.|...|. ...+.+|+++
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg-----~~~~d~d~~~ 83 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG-----YTFFDCDTLI 83 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT-----CEEEEHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC-----CcEEeCcHHH
Confidence 3699999999999999999999883 4567777765
No 151
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.57 E-value=0.002 Score=61.61 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=32.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCCeEE
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRV-TGRKSAT 264 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~-~G~~v~v 264 (476)
..++.+|.|.|+.||||||+++.|...|.. .|..|.+
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 346789999999999999999999999988 7887766
No 152
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.53 E-value=0.0011 Score=62.68 Aligned_cols=26 Identities=35% Similarity=0.204 Sum_probs=23.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
.-+|+|.||+|||||||.+.|..++.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35899999999999999999988764
No 153
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.53 E-value=0.0011 Score=63.32 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=26.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
-++||.|++|||||||.+.|..++.. ..--|..|+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g 66 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDN 66 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETT
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEECC
Confidence 38999999999999999999877642 333445554
No 154
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.48 E-value=0.0014 Score=59.17 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
-+|+|.|+.|||||||.+.|..++
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 589999999999999999999988
No 155
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.46 E-value=0.0032 Score=62.91 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=36.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
...||+|+|--|+||||+|-.|...|.+.|.+|.+|=.|
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 457999999999999999999999999999999999999
No 156
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.42 E-value=0.003 Score=59.64 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=34.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.+|+|+|-.|+||||+|..|+..|.+.|.+|.+|-+|-
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 37888999999999999999999998899999999983
No 157
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.42 E-value=0.0016 Score=61.27 Aligned_cols=35 Identities=31% Similarity=0.263 Sum_probs=30.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
+|.|.||+||||+|.|+.|+..+ ....||+.|.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHHHHH
Confidence 67899999999999999999887 467799988875
No 158
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.41 E-value=0.0032 Score=58.41 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=30.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI 265 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI 265 (476)
.|.|-|.-||||||.++.|+..|++.|.+|.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 688999999999999999999999989887655
No 159
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.39 E-value=0.0013 Score=62.13 Aligned_cols=34 Identities=21% Similarity=0.445 Sum_probs=26.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
++||.|++|||||||.+.|..++. +..-.|..|+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g 65 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEG 65 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECC
Confidence 899999999999999999987764 2334455554
No 160
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.37 E-value=0.0027 Score=66.10 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=33.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
..|.+|.+.|.+||||||+++.|+..+...+..+..++.|+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~ 77 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ 77 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecch
Confidence 56789999999999999999999998876566666666665
No 161
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.36 E-value=0.0033 Score=57.20 Aligned_cols=39 Identities=18% Similarity=-0.045 Sum_probs=30.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
...+|+|.|.+|||||||+..|...+... .++.+|..|-
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~ 67 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDV 67 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCC
Confidence 45789999999999999998888766433 5677787654
No 162
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.35 E-value=0.0016 Score=63.99 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=26.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
++||.|++|||||||.+.|..++.. ..-.|..|+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~~~G 69 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKP---SSGRILFDN 69 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC---CCeEEEECC
Confidence 8999999999999999999877642 333444444
No 163
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.34 E-value=0.0029 Score=69.29 Aligned_cols=40 Identities=25% Similarity=0.295 Sum_probs=33.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
.++.+|.|.|.+||||||+|+.|+..|...|..+..+..|
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 3678999999999999999999999997767766555433
No 164
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.34 E-value=0.0019 Score=61.93 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999999988764
No 165
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.32 E-value=0.0018 Score=60.85 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=24.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+|.+|.|.|+.||||||+++.|+..|+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 368999999999999999999998874
No 166
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.31 E-value=0.0023 Score=60.19 Aligned_cols=27 Identities=15% Similarity=0.045 Sum_probs=22.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
++.+|+|+||+|||||||++.|...+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445889999999999999999887653
No 167
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.27 E-value=0.0031 Score=64.13 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=24.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVT 258 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~ 258 (476)
-+|+|+||+|||||||.+.|...+...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 389999999999999999999988764
No 168
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.26 E-value=0.0019 Score=62.38 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=32.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT 273 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~ 273 (476)
-.-+||.|++||||||+|+.|+..+ .+..|++||.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~-----g~~~is~gdllR~ 45 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF-----GIPQISTGDMLRA 45 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH-----TCCEECHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh-----CCCeeechHHHHH
Confidence 3579999999999999999999887 4668999988753
No 169
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.25 E-value=0.0052 Score=55.18 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=32.6
Q ss_pred EEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 233 YIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 233 VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
+|+|. +-.|+||||+|..|...|.+.|.+|.+|-.|
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 67776 6788999999999999999999999999999
No 170
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.25 E-value=0.0019 Score=62.08 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=26.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
-++||.|++|||||||.+.|..++. +..-.|..|+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g 70 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDG 70 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECC
Confidence 3899999999999999999987764 2334444554
No 171
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.25 E-value=0.003 Score=60.43 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=28.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc----CCCeEEE
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVT----GRKSATI 265 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~----G~~v~vI 265 (476)
.+..+|.|.|+.||||||+++.|...|... |..|.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 356789999999999999999999999877 8777543
No 172
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.25 E-value=0.0033 Score=54.35 Aligned_cols=26 Identities=19% Similarity=0.058 Sum_probs=22.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
..|.|.|++|+||||+++.+...+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34679999999999999999988754
No 173
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.24 E-value=0.002 Score=62.51 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3899999999999999999987764
No 174
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.23 E-value=0.0046 Score=59.42 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=34.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.+|+|+|-.|+||||+|..|+..|.+.|.+|.+|-+|-
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 47888999999999999999999998899999999984
No 175
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.22 E-value=0.003 Score=61.72 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=34.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 227 IYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 227 ~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
..+.|..|.+.||+|+|||++|+.|+..+ |..+..++..++.
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~ 73 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELE 73 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhh
Confidence 34567889999999999999999999888 5677777765553
No 176
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.20 E-value=0.0021 Score=62.01 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=22.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
++||.|++|||||||.+.|..++.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 899999999999999999987764
No 177
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.19 E-value=0.0017 Score=63.32 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3899999999999999999988764
No 178
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.19 E-value=0.0022 Score=69.00 Aligned_cols=41 Identities=29% Similarity=0.266 Sum_probs=32.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcC-CCeEEEecccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTG-RKSATISIDDF 270 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G-~~v~vISlDDF 270 (476)
+..+|+|.|++||||||+++.|...|...+ ..+..+-.|++
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 457999999999999999999999997543 34555666654
No 179
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.19 E-value=0.0028 Score=58.30 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=28.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHH--HHH----cCCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYL--FRV----TGRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~l--L~~----~G~~v~vISlDD 269 (476)
-+++|.|++|||||||+..|... +.. .+..+..++.++
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 48999999999999999998874 321 134566666655
No 180
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.18 E-value=0.0035 Score=61.20 Aligned_cols=39 Identities=31% Similarity=0.221 Sum_probs=33.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.|.|.|++|+||||+++.|...+...+..+..++.++|.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 467899999999999999998887667788888887774
No 181
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.18 E-value=0.0022 Score=61.21 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999987764
No 182
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.17 E-value=0.0045 Score=58.50 Aligned_cols=32 Identities=25% Similarity=0.186 Sum_probs=28.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCC-Ce
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGR-KS 262 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~-~v 262 (476)
..+|.|.|+.||||||.++.|...|...|. .+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v 35 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM 35 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 357889999999999999999999988887 44
No 183
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.17 E-value=0.0047 Score=59.17 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=31.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
-.|.|.|++|+||||+|+.|...+...+..+..+.+..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 87 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc
Confidence 4789999999999999999999886544456666666554
No 184
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.16 E-value=0.0023 Score=62.38 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3899999999999999999987764
No 185
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.13 E-value=0.0024 Score=62.33 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=26.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
-++||.|++|||||||.+.|..++.. ..-.|..|+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p---~~G~I~~~g 80 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDG 80 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECC
Confidence 38999999999999999999887642 333444444
No 186
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.12 E-value=0.0075 Score=58.31 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=35.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.+.|.+.|+.|+||||++-.+...+...|.+|.++.+|-
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 477999999999999999999988888899999999986
No 187
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.10 E-value=0.0026 Score=60.28 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=30.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc-C-----CCeEEEeccccccC
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVT-G-----RKSATISIDDFYLT 273 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~-G-----~~v~vISlDDFYl~ 273 (476)
++||.|++|||||||.+.|..++... | -++..+.++..+.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~ 82 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 82 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccC
Confidence 89999999999999999998877532 1 13555666654443
No 188
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.09 E-value=0.0074 Score=60.66 Aligned_cols=41 Identities=32% Similarity=0.323 Sum_probs=36.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
....|+-++|..|+||||+|..|+..|.+.|.+|.+|.+|-
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34567778899999999999999999998999999999996
No 189
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.06 E-value=0.0057 Score=58.71 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=28.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHc----------CCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVT----------GRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~----------G~~v~vISlDD 269 (476)
-+++|.|++|||||||+..|...+..- +.+|..++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 489999999999999999998866531 23565666555
No 190
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.06 E-value=0.0027 Score=61.62 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3899999999999999999987764
No 191
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.06 E-value=0.0045 Score=63.04 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=24.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVT 258 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~ 258 (476)
-+|+|.|++|||||||.+.|...+...
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 489999999999999999999988754
No 192
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.06 E-value=0.0028 Score=61.51 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3899999999999999999987764
No 193
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.05 E-value=0.0021 Score=64.17 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-+|||.|++|||||||.+.|..++.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CEEEEECCCCchHHHHHHHHHcCCC
Confidence 3899999999999999999987764
No 194
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.04 E-value=0.0034 Score=61.20 Aligned_cols=26 Identities=27% Similarity=0.162 Sum_probs=23.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
|.|||.|++|||||||.+.|..++..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 78999999999999999999988743
No 195
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.03 E-value=0.0035 Score=62.74 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
-+|||.|++|||||||++.|..++
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 389999999999999999999988
No 196
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.03 E-value=0.0074 Score=57.87 Aligned_cols=43 Identities=28% Similarity=0.440 Sum_probs=32.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCC----CeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGR----KSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~----~v~vISlDDFY 271 (476)
..+.-|.|.|++|+||||+|+.+...+...+. .+..++..++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 34456789999999999999999999876543 45556655553
No 197
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.02 E-value=0.0074 Score=56.21 Aligned_cols=39 Identities=26% Similarity=0.154 Sum_probs=30.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.|.-|.|.|++|+||||+|+.|...+ +.....++..++.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~ 76 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFV 76 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHH
Confidence 34557799999999999999998876 4566666666654
No 198
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.01 E-value=0.0064 Score=57.54 Aligned_cols=40 Identities=30% Similarity=0.272 Sum_probs=34.2
Q ss_pred CCcEEEEE-eCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 229 LPWWYIGF-SAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 229 ~~P~VIGI-aG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
+.+.+|+| +|-.|+||||+|..|+..|. .|.+|.+|-+|-
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~ 65 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDT 65 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECT
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCC
Confidence 34667777 57788999999999999999 899999999994
No 199
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.00 E-value=0.0026 Score=60.21 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=22.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
++||.|++|||||||.+.|..++.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 799999999999999999987764
No 200
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.00 E-value=0.0071 Score=56.89 Aligned_cols=37 Identities=35% Similarity=0.167 Sum_probs=28.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
|.-|.|.|++|+||||+|+.|...+ +..+..++..++
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~ 81 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDF 81 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHH
Confidence 3348899999999999999999877 345555555554
No 201
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.00 E-value=0.0019 Score=61.72 Aligned_cols=25 Identities=32% Similarity=0.604 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999988775
No 202
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.00 E-value=0.003 Score=61.97 Aligned_cols=24 Identities=29% Similarity=0.149 Sum_probs=22.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
++||.|++|||||||.+.|..++.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 899999999999999999987764
No 203
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.98 E-value=0.0021 Score=65.03 Aligned_cols=34 Identities=35% Similarity=0.365 Sum_probs=26.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
+|+|+|++|||||||.+.|...+.. ..-.|++||
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~---~~g~I~ie~ 210 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPF---DQRLITIED 210 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCT---TSCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC---CceEEEECC
Confidence 7999999999999999999877643 333455554
No 204
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.97 E-value=0.0081 Score=55.99 Aligned_cols=40 Identities=28% Similarity=0.223 Sum_probs=34.2
Q ss_pred EEEEE-eCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 232 WYIGF-SAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 232 ~VIGI-aG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.+|+| ++..|+||||+|..|...|.+.|.+|.+|-.|-..
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGL 43 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 46777 56788999999999999999899999999998643
No 205
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.95 E-value=0.0034 Score=59.88 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=30.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHc-C-----CCeEEEecccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVT-G-----RKSATISIDDFYL 272 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~-G-----~~v~vISlDDFYl 272 (476)
-++||.|++|||||||.+.|..++... | -++..+.++.++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~ 78 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQ 78 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCC
Confidence 389999999999999999998877532 1 1355667776543
No 206
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.95 E-value=0.0047 Score=64.20 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=26.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI 265 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI 265 (476)
-+|+|+|++|||||||.+.|..++.....++.++
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 4899999999999999999998886543344443
No 207
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.95 E-value=0.0086 Score=58.13 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=35.3
Q ss_pred CcEEEEEeCC-CCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 230 PWWYIGFSAP-QGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 230 ~P~VIGIaG~-sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.+.+|+|+|+ .|+||||+|..|+..|.+.|.+|.+|-.|-
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~ 121 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDM 121 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4568888876 789999999999999998899999999984
No 208
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.93 E-value=0.003 Score=59.31 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=22.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVT 258 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~ 258 (476)
++||.|++|||||||.+.|..+ ...
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl-~p~ 48 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ-ALQ 48 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH-HHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC-CCc
Confidence 7999999999999999999988 643
No 209
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.92 E-value=0.0053 Score=65.64 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=33.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH-c-CCCeEEEeccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRV-T-GRKSATISIDD 269 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~-~-G~~v~vISlDD 269 (476)
.+++|-+.|.+||||||+|++|+..|.. . |..+..+-.|+
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 4589999999999999999999999975 4 35566777776
No 210
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.91 E-value=0.0077 Score=59.28 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=35.1
Q ss_pred CcEEEEEeCC-CCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 230 PWWYIGFSAP-QGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 230 ~P~VIGIaG~-sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.+.+|+|+|+ .|+||||+|..|+..|.+.|.+|.+|-.|-
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4568888876 699999999999999998899999998885
No 211
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.89 E-value=0.0042 Score=53.95 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
.|.|.|++|+||||+++.+...+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4579999999999999999988754
No 212
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.87 E-value=0.0017 Score=61.85 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=24.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+++.+|.|.|+.||||||+++.|+..|.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999988773
No 213
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.86 E-value=0.0041 Score=59.71 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=20.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYL 254 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~l 254 (476)
++||.|++|||||||.+.|..+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999876
No 214
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.86 E-value=0.0072 Score=57.36 Aligned_cols=39 Identities=26% Similarity=0.153 Sum_probs=30.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.+.-|.|.|++|+||||+|+.|...+ +..+..++..++.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELV 88 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHH
Confidence 34458899999999999999998776 4566667666664
No 215
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.85 E-value=0.0078 Score=54.89 Aligned_cols=38 Identities=29% Similarity=0.135 Sum_probs=28.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
++++|.|.|.+|||||||+..|...+.. ..++.+|..|
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~-~~~~~~i~~d 74 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD-KYKIACIAGD 74 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTT-TCCEEEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcc-CCeEEEEECC
Confidence 4678999999999999999887766532 2456666644
No 216
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.85 E-value=0.0038 Score=63.89 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.||+|||||||.+.|..++.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3899999999999999999998774
No 217
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.85 E-value=0.0079 Score=60.81 Aligned_cols=39 Identities=26% Similarity=0.258 Sum_probs=33.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
-++.|.|++||||||||..+...+...|.+|..++++.-
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 489999999999999999988777666888888988763
No 218
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.84 E-value=0.0087 Score=59.33 Aligned_cols=39 Identities=28% Similarity=0.363 Sum_probs=36.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
..|+-++|..|+||||+|..|+..|.+.|.+|.+|.+|-
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 467778899999999999999999998999999999996
No 219
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.84 E-value=0.0044 Score=63.64 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCC
Confidence 3899999999999999999987764
No 220
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.81 E-value=0.0035 Score=60.56 Aligned_cols=24 Identities=25% Similarity=0.420 Sum_probs=22.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
++||.|++|||||||.+.|..++.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 899999999999999999987764
No 221
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=95.79 E-value=0.012 Score=55.39 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=33.5
Q ss_pred EEEEE-eCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 232 WYIGF-SAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 232 ~VIGI-aG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
.+|+| +|..|+||||+|..|...|.+.|.+|.+|-.|-.
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 42 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 35666 5788999999999999999988999999988853
No 222
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.79 E-value=0.0067 Score=59.96 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=32.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH-HcCCCeEEEecccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR-VTGRKSATISIDDF 270 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~-~~G~~v~vISlDDF 270 (476)
.-|.|.|++|+|||+||.+|...+. ..|.+|..++..+|
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 3567899999999999999999887 77888777766543
No 223
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.78 E-value=0.0059 Score=59.27 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 044604 234 IGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL 255 (476)
|+|.||+|||||||+++|...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 8999999999999999999876
No 224
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.78 E-value=0.0043 Score=61.46 Aligned_cols=34 Identities=29% Similarity=0.123 Sum_probs=26.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS 266 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS 266 (476)
-.+++|+|++|||||||.+.|.... .|.++++|.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~ 37 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIE 37 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEEC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEE
Confidence 3589999999999999999887654 345555553
No 225
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.77 E-value=0.0088 Score=61.07 Aligned_cols=39 Identities=23% Similarity=0.156 Sum_probs=33.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.-++.|.|++|||||||+..+...+...|.+|..|+...
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 458999999999999999999988877777787777664
No 226
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.76 E-value=0.0048 Score=59.94 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
-++||.|++|||||||.+.|..++
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999998763
No 227
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.74 E-value=0.0054 Score=57.04 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=18.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 044604 234 IGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL 255 (476)
|-|+||||||||||++.|...+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 4589999999999998876654
No 228
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.74 E-value=0.0047 Score=61.99 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-.++|.|++|||||||++.|..++.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998874
No 229
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.74 E-value=0.0065 Score=57.86 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=24.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
...||+|+|+.||||||+++.|+..|
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 35799999999999999999999988
No 230
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=95.73 E-value=0.0091 Score=60.14 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=35.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
+.|+-++|-.|+||||+|..|+..|...|.+|.+|.+|
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 45777999999999999999999998889999999999
No 231
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.71 E-value=0.006 Score=54.01 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=22.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcC
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTG 259 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G 259 (476)
|.|.|++|+||||+++.+...+...+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~ 66 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGEN 66 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccc
Confidence 78999999999999999988875433
No 232
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=95.71 E-value=0.01 Score=59.07 Aligned_cols=40 Identities=25% Similarity=0.197 Sum_probs=35.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
..|+-++|..|+||||+|..|+..|.+.|.+|.+|.+|--
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3466678999999999999999999988999999999953
No 233
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.71 E-value=0.0053 Score=63.34 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.||+|||||||.+.|..++.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3899999999999999999998875
No 234
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.71 E-value=0.0048 Score=59.70 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 3899999999999999999987763
No 235
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.70 E-value=0.017 Score=54.86 Aligned_cols=39 Identities=26% Similarity=0.198 Sum_probs=28.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE-ecccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI-SIDDF 270 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI-SlDDF 270 (476)
..+.-|-|.|++|+||||+|+.|...+ +.....+ +.|++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~~~ 101 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDKM 101 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGGGC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHHHh
Confidence 456678899999999999999999876 4444444 44444
No 236
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=95.69 E-value=0.01 Score=63.34 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=36.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.+.++.++|..|+||||+|..|...+.+.|.+|.+|++|=
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3457789999999999999999999998899999999993
No 237
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.66 E-value=0.0056 Score=62.52 Aligned_cols=25 Identities=32% Similarity=0.728 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.||+|||||||.+.|..++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 3899999999999999999998774
No 238
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=95.65 E-value=0.0092 Score=56.45 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=34.4
Q ss_pred cEEEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 231 WWYIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 231 P~VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
..+|+|. +-.|+||||+|..|+..|.+.|.+|.+|-+|-
T Consensus 6 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4578886 67799999999999999998899999999995
No 239
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.64 E-value=0.0059 Score=62.44 Aligned_cols=25 Identities=24% Similarity=0.668 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-+++|.||+|||||||.+.|..++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3899999999999999999998764
No 240
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.62 E-value=0.006 Score=62.29 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=22.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+++|.|++|||||||.+.|..++.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 899999999999999999998764
No 241
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.61 E-value=0.0061 Score=62.55 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-+++|.||+|||||||.+.|..++.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 3899999999999999999998764
No 242
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.60 E-value=0.0061 Score=62.46 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
++||.|++|||||||.+.|..++.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 899999999999999999988764
No 243
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.59 E-value=0.0071 Score=56.78 Aligned_cols=23 Identities=39% Similarity=0.420 Sum_probs=21.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHH
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
|+|.|++|+|||||++.|...+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998763
No 244
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.59 E-value=0.0061 Score=60.41 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=23.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
.+-.++|.||+|+|||||++.|...+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34568999999999999999999887
No 245
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.57 E-value=0.006 Score=54.16 Aligned_cols=24 Identities=17% Similarity=0.458 Sum_probs=22.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+.+|.|++||||||+.++|..+|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 889999999999999999998874
No 246
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.57 E-value=0.0032 Score=63.06 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+|+|.|++|||||||.+.|..++.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 799999999999999999887764
No 247
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.55 E-value=0.006 Score=58.87 Aligned_cols=39 Identities=23% Similarity=0.209 Sum_probs=30.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc-C-----CCeEEEeccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVT-G-----RKSATISIDDFY 271 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~-G-----~~v~vISlDDFY 271 (476)
++||.|++|||||||.+.|..++... | ..+..+.++..+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~ 77 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSS 77 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCcc
Confidence 89999999999999999998887532 2 245667776544
No 248
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.54 E-value=0.013 Score=54.10 Aligned_cols=37 Identities=32% Similarity=0.322 Sum_probs=32.4
Q ss_pred EEEE-eCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 233 YIGF-SAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 233 VIGI-aG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
+|+| ++-.|+||||+|..|+..|.+.| +|.+|-+|-.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q 39 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPN 39 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCC
Confidence 4666 58889999999999999999889 9999999954
No 249
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.52 E-value=0.0055 Score=62.29 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-+++|.||+|||||||.+.|..++.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 3899999999999999999987764
No 250
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.49 E-value=0.015 Score=59.19 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=32.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
..+|.|.|++|+||||||..+...+...|.+|..|+++.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 348899999999999999888877766788898888854
No 251
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.48 E-value=0.0099 Score=57.13 Aligned_cols=38 Identities=26% Similarity=0.184 Sum_probs=32.7
Q ss_pred EEEEe---CCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 233 YIGFS---APQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 233 VIGIa---G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
+|+|+ +-.|+||||+|..|+..|.+.|.+|.+|-+|-.
T Consensus 36 ~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q 76 (298)
T 2oze_A 36 AIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQ 76 (298)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 44444 589999999999999999988999999999964
No 252
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.45 E-value=0.013 Score=55.59 Aligned_cols=38 Identities=26% Similarity=0.220 Sum_probs=29.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
|.-|-|.|++|+||||+|+.|...+ +..+..+...++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~~~ 87 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFT 87 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGGS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchhcc
Confidence 3346689999999999999999887 4566667666554
No 253
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.45 E-value=0.014 Score=57.35 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=34.4
Q ss_pred CcEEEEEeC-CCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 230 PWWYIGFSA-PQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 230 ~P~VIGIaG-~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
.+.+|+|.| ..|+||||+|..|+..|.+.|.+|.+|-.|--
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 345677765 57999999999999999988999999999854
No 254
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.0057 Score=64.30 Aligned_cols=26 Identities=19% Similarity=0.033 Sum_probs=23.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVT 258 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~ 258 (476)
+|+|.|++|||||||++.|..++...
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~p~ 165 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYALKF 165 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCccccc
Confidence 79999999999999999999887654
No 255
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.42 E-value=0.014 Score=54.54 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=27.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI 265 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI 265 (476)
..|.|-|+-||||||.++.|+..|.+ |.+|...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEEe
Confidence 36889999999999999999999964 7666544
No 256
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.41 E-value=0.045 Score=53.53 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=26.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc-CCCeEEEe
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVT-GRKSATIS 266 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~-G~~v~vIS 266 (476)
.|.|.|++|+||||+++.+...+... +..+..+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 78899999999999999999888654 34444444
No 257
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.38 E-value=0.0052 Score=62.47 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.||+|||||||.+.|..++.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3899999999999999999998764
No 258
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.37 E-value=0.019 Score=52.93 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=34.1
Q ss_pred cEEEEEe-CCCCCcHHHHHHHHHHHHHHc-CCCeEEEecccc
Q 044604 231 WWYIGFS-APQGCGKTTLAFALDYLFRVT-GRKSATISIDDF 270 (476)
Q Consensus 231 P~VIGIa-G~sGSGKTTLA~~L~~lL~~~-G~~v~vISlDDF 270 (476)
..+|+|. +-.|+||||+|..|+..|.+. |.+|.+|-+|--
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 4567666 567999999999999999988 999999999844
No 259
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.37 E-value=0.011 Score=52.56 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=23.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
|.+|.|.|++|+||||+++.+...+..
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 347889999999999999999887753
No 260
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.35 E-value=0.013 Score=56.12 Aligned_cols=38 Identities=29% Similarity=0.207 Sum_probs=27.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
.+.-|.|.|++|+||||+|+.|...+ +.....++..++
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASL 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHH
Confidence 34568899999999999999998876 334444554443
No 261
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.34 E-value=0.016 Score=58.81 Aligned_cols=38 Identities=24% Similarity=0.210 Sum_probs=35.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH--HcCCCeEEEecc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFR--VTGRKSATISID 268 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~--~~G~~v~vISlD 268 (476)
..||.++|-.|+||||+|..|+..+. ..|.+|.+|.+|
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 35788999999999999999999998 789999999999
No 262
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.34 E-value=0.012 Score=57.31 Aligned_cols=38 Identities=18% Similarity=-0.025 Sum_probs=28.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHc---CCCeEEEec
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVT---GRKSATISI 267 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~---G~~v~vISl 267 (476)
.+..|.|.|++|+|||||++.+...+... +..++.+..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 34578899999999999999999888654 344444443
No 263
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.33 E-value=0.013 Score=57.11 Aligned_cols=26 Identities=42% Similarity=0.521 Sum_probs=23.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
.+..|.|.|++|+||||+|+.|...+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45578899999999999999999876
No 264
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.32 E-value=0.021 Score=52.50 Aligned_cols=39 Identities=28% Similarity=0.278 Sum_probs=33.3
Q ss_pred EEEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 232 WYIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 232 ~VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
.+|+|. +..|+||||+|..|...|.+.|.+|.+|-.|--
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 366665 667999999999999999988999999988853
No 265
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.32 E-value=0.031 Score=56.34 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=35.8
Q ss_pred CCcEEEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 229 LPWWYIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 229 ~~P~VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
+++.+|+|. |-.|+||||+|..|+..|.+.|.+|.+|-.|
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 456788887 5889999999999999998889999999999
No 266
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.32 E-value=0.009 Score=56.99 Aligned_cols=36 Identities=19% Similarity=0.085 Sum_probs=28.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
...|.|.|++||||||||..|...+ . .+|+-|....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g----~--~iIsdDs~~v 69 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG----H--RLIADDRVDV 69 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT----C--EEEESSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC----C--eEEecchhhe
Confidence 3578899999999999998887553 2 6788886554
No 267
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.32 E-value=0.019 Score=52.60 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=28.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH-HHHHcCCCeEEEecc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDY-LFRVTGRKSATISID 268 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~-lL~~~G~~v~vISlD 268 (476)
-++-|+|++|+||||||..+.. .....|.+|..++++
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4788999999999999977654 344446778777776
No 268
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.31 E-value=0.013 Score=54.79 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=30.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH-----HcC-CCeEEEecccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFR-----VTG-RKSATISIDDFYL 272 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~-----~~G-~~v~vISlDDFYl 272 (476)
.+.++.|.|++|||||++|..+...+. +.| ..+.+..+||+-.
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~ 52 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKI 52 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCS
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccc
Confidence 467899999999999999966533321 335 5555667788754
No 269
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.31 E-value=0.0082 Score=58.44 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=21.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
++||.|++|||||||.+.|..++
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999998776
No 270
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.31 E-value=0.005 Score=65.58 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
.+|+|+|++|||||||.+.|..++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4699999999999999999887774
No 271
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.30 E-value=0.015 Score=61.46 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=30.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
-+++|.|++|||||||++.+...+...|.++..+...
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4899999999999999999998887667666555543
No 272
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.29 E-value=0.01 Score=60.99 Aligned_cols=26 Identities=46% Similarity=0.401 Sum_probs=23.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
.+-+|+|.|++|||||||++.|...+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34589999999999999999999876
No 273
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.27 E-value=0.015 Score=55.16 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=30.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.++.||||+|-+||||+|+|..|...+.. ..+.++++=|
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~--~~~~vv~msD 47 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGA--DVCAVLRLSG 47 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCT--TTEEEECTHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCC--CCceEEEccH
Confidence 46789999999999999999999887632 1356666654
No 274
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.26 E-value=0.01 Score=53.26 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=22.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYL 254 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~l 254 (476)
...+.|+|.|++|||||||.+.|...
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 34689999999999999999887654
No 275
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.23 E-value=0.011 Score=61.12 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=32.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc--CCCeEEEeccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVT--GRKSATISIDDFY 271 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~--G~~v~vISlDDFY 271 (476)
+.-+.|.|++|+|||||+++|...+... +.++..++..+|.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 3357799999999999999999888655 6677777777763
No 276
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=95.21 E-value=0.02 Score=52.33 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=28.4
Q ss_pred EEEEeC-CCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604 233 YIGFSA-PQGCGKTTLAFALDYLFRVTGRKSATI 265 (476)
Q Consensus 233 VIGIaG-~sGSGKTTLA~~L~~lL~~~G~~v~vI 265 (476)
+|+|+| ..|+||||+|..|...|.+.|.+|.++
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 567776 479999999999999999889998775
No 277
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=95.21 E-value=0.011 Score=57.12 Aligned_cols=24 Identities=25% Similarity=0.077 Sum_probs=21.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
.+|||+|+.||||||+|+.|...+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~ 25 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999998764
No 278
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.19 E-value=0.011 Score=51.41 Aligned_cols=36 Identities=17% Similarity=-0.022 Sum_probs=26.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
|-|.|++|+|||++|+.|.......+...+ +.....
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~ 62 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTP 62 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCC
Confidence 569999999999999999877644444444 544443
No 279
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.19 E-value=0.015 Score=51.02 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
.+++.|+|.|++|+|||||.+.|..
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999988753
No 280
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=95.17 E-value=0.023 Score=54.89 Aligned_cols=39 Identities=31% Similarity=0.284 Sum_probs=34.1
Q ss_pred cEEEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 231 WWYIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 231 P~VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
+.+|+|+ +-.|+||||+|..|...|.+.|.+|.+|-.|-
T Consensus 4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3477776 67899999999999999998899999999986
No 281
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.16 E-value=0.018 Score=56.83 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=31.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
-+|.|+|++|+||||||..+.......|.+|..+++.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 4788999999999999988886665557778888877
No 282
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=95.13 E-value=0.018 Score=58.25 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=35.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH--HcCCCeEEEeccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFR--VTGRKSATISIDD 269 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~--~~G~~v~vISlDD 269 (476)
..|+-++|-.|+||||+|..|+..|. +.|.+|.+|.+|-
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 35677889999999999999999998 8899999999996
No 283
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.10 E-value=0.019 Score=56.87 Aligned_cols=28 Identities=29% Similarity=0.037 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
...+|||.|+.|+|||||++.+...+..
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 3456666999999999999999887754
No 284
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.10 E-value=0.029 Score=53.19 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=33.7
Q ss_pred cEEEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 231 WWYIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 231 P~VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
+.+|+|. |-.|+||||+|..|+..|.+.|.+|.+|-+|--
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~ 58 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFL 58 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4567765 677899999999999999988999999988843
No 285
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.05 E-value=0.011 Score=56.62 Aligned_cols=23 Identities=39% Similarity=0.420 Sum_probs=21.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHH
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
|+|.|++|+|||||++.|...+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 88999999999999999998763
No 286
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.05 E-value=0.023 Score=58.89 Aligned_cols=39 Identities=23% Similarity=0.180 Sum_probs=32.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCCeEEEeccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRV-TGRKSATISIDD 269 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~-~G~~v~vISlDD 269 (476)
--+|.|+|++|+|||||+..+...+.. .|.+|..+++..
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 348999999999999999988877654 477898888764
No 287
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.05 E-value=0.018 Score=56.01 Aligned_cols=29 Identities=17% Similarity=-0.024 Sum_probs=24.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVT 258 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~ 258 (476)
.+..|.|.|++|+||||+++.+...+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~ 71 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34568899999999999999999887543
No 288
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.03 E-value=0.0096 Score=58.84 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=32.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHc-C-----CCeEEEeccccccCHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVT-G-----RKSATISIDDFYLTAEGQA 278 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~-G-----~~v~vISlDDFYl~~~er~ 278 (476)
-++||.|++|||||||.+.|..++... | -++..+.++..+.+...++
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~e 117 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKE 117 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHH
Confidence 389999999999999999998877532 2 1455666765544433333
No 289
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.02 E-value=0.01 Score=63.60 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhhccC
Confidence 3899999999999999999988764
No 290
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.01 E-value=0.011 Score=63.20 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 38999999999999999999888753
No 291
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.97 E-value=0.015 Score=54.86 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=29.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
|-|.|++|+|||++|+.|...+...+..++.|...++
T Consensus 32 vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 32 VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp EEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred EEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 5689999999999999999877544455666766655
No 292
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.95 E-value=0.015 Score=58.66 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
+--+++|.|++|||||||+..|....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34599999999999999999998876
No 293
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.95 E-value=0.022 Score=55.94 Aligned_cols=29 Identities=17% Similarity=-0.003 Sum_probs=24.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVT 258 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~ 258 (476)
.|..|.|.|++|+||||+++.+...+...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34578899999999999999999887554
No 294
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.021 Score=50.37 Aligned_cols=25 Identities=32% Similarity=0.181 Sum_probs=21.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
...+.|+|.|++|||||||...|..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999987753
No 295
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.88 E-value=0.017 Score=51.83 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYL 254 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~l 254 (476)
.+.|+|.|++|||||||.+.|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 578999999999999999887653
No 296
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.88 E-value=0.025 Score=57.67 Aligned_cols=39 Identities=28% Similarity=0.291 Sum_probs=33.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
-+|-|.|++|+||||||..+...+...|.+|..|+++.-
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA 113 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 478889999999999998888777666788999998863
No 297
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.87 E-value=0.02 Score=61.03 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=29.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
++.+|+|.||+|+||||||+.|...+. .....|+++++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~i~~~~~~ 145 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG---RKFVRISLGGVR 145 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT---CEEEEECCCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC---CCeEEEEecccc
Confidence 345899999999999999999999983 455566666543
No 298
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.80 E-value=0.012 Score=60.66 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=22.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-+++|.||+|||||||.+.|..++.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 3899999999999999999987764
No 299
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.80 E-value=0.026 Score=51.60 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=25.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI 265 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI 265 (476)
.++.|.|+.||||||++..+...+...|.++.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4788999999999999965555554557776665
No 300
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.79 E-value=0.025 Score=57.36 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=31.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
-+|.|+|++|+|||||+..+...+...|.+|..+|+.
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 3788999999999999988887776678889888886
No 301
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.78 E-value=0.035 Score=53.00 Aligned_cols=35 Identities=17% Similarity=0.062 Sum_probs=29.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI 265 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI 265 (476)
-.++-|.|+.|+||||++..+...+...|.+|.++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 36888999999999999988777777778888877
No 302
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.76 E-value=0.021 Score=48.51 Aligned_cols=24 Identities=8% Similarity=-0.085 Sum_probs=20.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
...+-|+|.|.+|||||||...|.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHH
Confidence 356789999999999999998765
No 303
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.75 E-value=0.02 Score=49.84 Aligned_cols=22 Identities=27% Similarity=0.307 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+.|+|.|++|+|||||.+.|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999998875
No 304
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.71 E-value=0.025 Score=48.86 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=21.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+++-|+|.|.+|+|||||...|.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEEECcCCCCHHHHHHHHH
Confidence 467889999999999999998765
No 305
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.71 E-value=0.017 Score=61.27 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=23.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 58999999999999999999998854
No 306
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.70 E-value=0.01 Score=53.27 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
....|+|.|++|||||||.+.|..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999987764
No 307
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.69 E-value=0.034 Score=58.10 Aligned_cols=40 Identities=23% Similarity=0.162 Sum_probs=31.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
..|.=|.+.||+|+|||++|++|+..+ |.....|+..++.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFV 243 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhh
Confidence 456668899999999999999999887 4566666666554
No 308
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.63 E-value=0.022 Score=59.50 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=26.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
++||.|++|||||||.+.|...+. ..+.+|..++
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~---~~~G~i~~~G 192 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTR---ADVIVVGLIG 192 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEec
Confidence 799999999999999998888763 3344444444
No 309
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.58 E-value=0.05 Score=57.38 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=27.1
Q ss_pred EEEEEeCCCCCcHHHHHHH--HHHHHHHcCCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFA--LDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~--L~~lL~~~G~~v~vISlDD 269 (476)
-+++|.|++|||||||++. +..++.. +-.++.|+..+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~g~i~v~g~~ 78 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVTFEE 78 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEEeC
Confidence 4899999999999999998 4556542 44455565444
No 310
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.57 E-value=0.02 Score=54.30 Aligned_cols=27 Identities=22% Similarity=-0.005 Sum_probs=24.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
..+|.|.|+.||||||+++.|...|..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468899999999999999999999853
No 311
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.57 E-value=0.022 Score=48.59 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
..++-|+|.|.+|+|||||...|.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHH
Confidence 456889999999999999987765
No 312
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.56 E-value=0.011 Score=63.51 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcC
Confidence 4899999999999999999887764
No 313
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.55 E-value=0.021 Score=56.39 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=30.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHc------CCCeEEEecccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVT------GRKSATISIDDF 270 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~------G~~v~vISlDDF 270 (476)
-++.|.|++||||||||..+....... |.+|..|++++-
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 489999999999999998887654322 457788888774
No 314
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.55 E-value=0.035 Score=55.93 Aligned_cols=35 Identities=23% Similarity=0.115 Sum_probs=28.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEec
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISI 267 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISl 267 (476)
-+.|.|++||||||+++.|...+...|.++.++--
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 46799999999999999988777667777766643
No 315
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.54 E-value=0.0097 Score=63.71 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 3899999999999999998887764
No 316
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.54 E-value=0.027 Score=47.58 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
+++-|+|.|.+|+|||||...+.
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999987665
No 317
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.53 E-value=0.011 Score=63.44 Aligned_cols=25 Identities=28% Similarity=0.386 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3899999999999999999987764
No 318
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.53 E-value=0.029 Score=47.39 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
+++-|+|.|.+|+|||||...|.
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999987765
No 319
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.48 E-value=0.017 Score=53.76 Aligned_cols=32 Identities=22% Similarity=0.035 Sum_probs=23.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
+|-|.|++||||||+|..|... |.++.-|.+.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~ 32 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATS 32 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECC
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecC
Confidence 3789999999999999987643 4455445443
No 320
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.47 E-value=0.016 Score=57.13 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHH
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+.+.||+|+||||+++.+...+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 78999999999999999998875
No 321
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.47 E-value=0.029 Score=56.15 Aligned_cols=39 Identities=26% Similarity=0.212 Sum_probs=30.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.+.-|.|.|++|+||||+|++|...+ +..+..++..++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~ 154 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLT 154 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhh
Confidence 45568899999999999999998776 4556666666554
No 322
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=94.47 E-value=0.047 Score=55.12 Aligned_cols=41 Identities=22% Similarity=0.196 Sum_probs=34.9
Q ss_pred CCcEEEEEe-CCCCCcHHHHHHHHHHHHHH------cCCCeEEEeccc
Q 044604 229 LPWWYIGFS-APQGCGKTTLAFALDYLFRV------TGRKSATISIDD 269 (476)
Q Consensus 229 ~~P~VIGIa-G~sGSGKTTLA~~L~~lL~~------~G~~v~vISlDD 269 (476)
..+.+|+|. |--|+||||+|..|+..|.. .|.+|.+|-+|-
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~ 153 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDP 153 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECT
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence 456778777 77889999999999999974 589999999994
No 323
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.46 E-value=0.019 Score=48.71 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+++-|+|.|.+|+|||||...|.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHH
Confidence 356889999999999999987765
No 324
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.46 E-value=0.056 Score=50.21 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=30.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS 266 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS 266 (476)
-.++.|.|+.||||||.+..+...+...|.+|.++.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 368999999999999999777777766789998884
No 325
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.45 E-value=0.012 Score=55.53 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHH
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
|.|.|++|+||||+|+.|...+.
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 66999999999999999998773
No 326
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.45 E-value=0.026 Score=57.07 Aligned_cols=24 Identities=33% Similarity=0.232 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
++||.|++|||||||.+.|..++.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 799999999999999999888864
No 327
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.44 E-value=0.012 Score=63.17 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=22.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3899999999999999999887764
No 328
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.43 E-value=0.028 Score=48.39 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=20.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
..++-|+|.|++|||||||...|.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999999997765
No 329
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.42 E-value=0.025 Score=47.54 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
++-|+|.|.+|+|||||...|.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999987765
No 330
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.41 E-value=0.029 Score=48.36 Aligned_cols=24 Identities=25% Similarity=0.023 Sum_probs=20.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+++.|+|.|.+|+|||||...|.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 456789999999999999998764
No 331
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.37 E-value=0.03 Score=48.06 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.++-|+|.|.+|+|||||.+.|.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEEECCCCccHHHHHHHHh
Confidence 46789999999999999998765
No 332
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.37 E-value=0.031 Score=54.88 Aligned_cols=37 Identities=30% Similarity=0.230 Sum_probs=28.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.+.-|.|.|++|+|||++|++|...+ +..+..++..+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~ 86 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSD 86 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHH
Confidence 45568899999999999999998876 34455555443
No 333
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.33 E-value=0.03 Score=56.00 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=31.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH------cCCCeEEEeccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRV------TGRKSATISIDDFY 271 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~------~G~~v~vISlDDFY 271 (476)
+.-++.|.|++||||||||..+...... .|.+|..|++++-+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~ 168 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTF 168 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCC
Confidence 4568999999999999999888765321 24577778887743
No 334
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.32 E-value=0.046 Score=57.33 Aligned_cols=40 Identities=25% Similarity=0.174 Sum_probs=32.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
..|.=|-+.||+|+|||+||++|+..+ |.....|+..++.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIV 252 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTC
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhc
Confidence 456678899999999999999999887 4566667766664
No 335
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.32 E-value=0.032 Score=48.02 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=21.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
.+++-|+|.|.+|+|||||.+.|..
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4568899999999999999877653
No 336
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.30 E-value=0.035 Score=54.85 Aligned_cols=41 Identities=32% Similarity=0.364 Sum_probs=29.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
..|.-|.|.||+|+|||++|+++...+. +.....++..++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLV 83 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSC
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHH
Confidence 3456788999999999999999998762 3345555555443
No 337
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=94.30 E-value=0.21 Score=48.35 Aligned_cols=34 Identities=26% Similarity=0.239 Sum_probs=28.1
Q ss_pred EEEEEeC-CCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604 232 WYIGFSA-PQGCGKTTLAFALDYLFRVTGRKSATI 265 (476)
Q Consensus 232 ~VIGIaG-~sGSGKTTLA~~L~~lL~~~G~~v~vI 265 (476)
..|-|+| .+|+||||++..|.+.|++.|.+|..+
T Consensus 27 ~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~f 61 (251)
T 3fgn_A 27 TILVVTGTGTGVGKTVVCAALASAARQAGIDVAVC 61 (251)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 3455666 469999999999999999999988765
No 338
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.26 E-value=0.024 Score=55.30 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=21.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
.|. +.|.|++|+||||+++.|...+
T Consensus 36 ~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 36 LPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 345 8899999999999999999854
No 339
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.25 E-value=0.036 Score=48.21 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=21.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
..++-|+|.|.+|+|||||...|..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3568899999999999999987654
No 340
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.053 Score=56.79 Aligned_cols=40 Identities=20% Similarity=0.028 Sum_probs=31.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
..|.=|-+-||+|+|||++|++|+..+ |.....++..++.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLV 252 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGC
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhh
Confidence 456678899999999999999999887 4566666666654
No 341
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.20 E-value=0.028 Score=47.82 Aligned_cols=23 Identities=13% Similarity=0.240 Sum_probs=20.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
+.+-|+|.|.+|+|||||.+.|.
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHH
Confidence 46789999999999999998764
No 342
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.18 E-value=0.027 Score=58.17 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=26.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH------cCCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV------TGRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~------~G~~v~vISlDD 269 (476)
-+++|.|++|||||||+..|...... .+.+++.|+..+
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 48999999999999999976533211 123466666665
No 343
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.17 E-value=0.035 Score=47.11 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
++-|+|.|.+|+|||||.+.|.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHH
Confidence 5779999999999999987765
No 344
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=94.14 E-value=0.036 Score=55.79 Aligned_cols=37 Identities=30% Similarity=0.458 Sum_probs=32.7
Q ss_pred EEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 233 YIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 233 VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
+|+|. +-.|+||||+|..|+..|.+.|.+|.+|-+|-
T Consensus 3 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~ 40 (361)
T 3pg5_A 3 TISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDP 40 (361)
T ss_dssp EEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 56665 78899999999999999998999999999983
No 345
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.10 E-value=0.048 Score=56.32 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCCeEEEecc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRV-TGRKSATISID 268 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~-~G~~v~vISlD 268 (476)
--+|.|+|++|+||||||..+...... .|.+|..+++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 348889999999999999888876654 47789888886
No 346
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.09 E-value=0.026 Score=58.74 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=23.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
.+.+|||.|++|||||||.+.|..++.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456999999999999999999987654
No 347
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.07 E-value=0.036 Score=55.14 Aligned_cols=36 Identities=28% Similarity=0.191 Sum_probs=27.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD 268 (476)
.+.-|.+.||+|+||||+|+.|...+ +.....+..-
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~~ 85 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL---DVPFTMADAT 85 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEechH
Confidence 34467789999999999999999887 3445445443
No 348
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.05 E-value=0.033 Score=48.40 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
+++-|+|.|.+|+|||||...|.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999998775
No 349
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.03 E-value=0.036 Score=48.15 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=21.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
..++-|+|.|.+|+|||||...|..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 4568899999999999999887653
No 350
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.03 E-value=0.039 Score=47.11 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+++-|+|.|.+|+|||||...|.
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 346789999999999999988774
No 351
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.02 E-value=0.027 Score=55.43 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
.+++|.|++|||||||.+.|. ++
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 489999999999999999988 54
No 352
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.00 E-value=0.041 Score=57.33 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=32.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
--+|.|+|++|+||||||..+.......|.+|..+|+..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 347889999999999999888766655588898888873
No 353
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.98 E-value=0.025 Score=60.52 Aligned_cols=26 Identities=38% Similarity=0.376 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 38999999999999999999988754
No 354
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.97 E-value=0.038 Score=46.95 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+-|+|.|.+|+|||||...|.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5779999999999999998765
No 355
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.95 E-value=0.027 Score=60.13 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999988764
No 356
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.94 E-value=0.0064 Score=58.23 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=22.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
+++|.||+|||||||.++|..++..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccccc
Confidence 6789999999999999999988853
No 357
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.93 E-value=0.044 Score=54.63 Aligned_cols=35 Identities=26% Similarity=0.205 Sum_probs=26.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
.-|-|.|++|+||||+|+.|...+ +..+..+....
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~~ 107 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDATS 107 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecchh
Confidence 346799999999999999999887 44555554433
No 358
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.92 E-value=0.035 Score=48.77 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
.+++-|+|.|.+|+|||||...|..
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceeEEEEECcCCCCHHHHHHHHHc
Confidence 4568999999999999999987753
No 359
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=93.92 E-value=0.032 Score=57.61 Aligned_cols=32 Identities=25% Similarity=0.168 Sum_probs=24.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTG 259 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G 259 (476)
..+.+.|.|-|+-||||||+++.|+..|+..|
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g 77 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 34678899999999999999999999987654
No 360
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.91 E-value=0.034 Score=53.43 Aligned_cols=37 Identities=27% Similarity=0.199 Sum_probs=28.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
..|.|.|++|+||||+|+.+...+ +..+..+....+-
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~ 75 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIE 75 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccC
Confidence 457789999999999999998877 3455556655553
No 361
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.88 E-value=0.035 Score=47.78 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=20.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
...+-|+|.|.+|+|||||...|.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 456889999999999999987764
No 362
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.24 Score=49.69 Aligned_cols=43 Identities=14% Similarity=-0.028 Sum_probs=33.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcC-----CCeEEEecccccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTG-----RKSATISIDDFYL 272 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G-----~~v~vISlDDFYl 272 (476)
.|..|-|.|++|+|||++++.+...|.... +.+..+++++.-.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 466788999999999999999999886531 2466777776654
No 363
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.84 E-value=0.06 Score=53.93 Aligned_cols=37 Identities=27% Similarity=0.179 Sum_probs=27.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
+.-|.|.|++|+||||+|++|...+ +.....++..++
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l 120 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL 120 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHH
Confidence 3457788999999999999999887 344444544433
No 364
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.83 E-value=0.043 Score=47.43 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+.+-|+|.|.+|+|||||...|.
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHh
Confidence 456889999999999999987765
No 365
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.82 E-value=0.058 Score=58.05 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=29.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS 266 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS 266 (476)
-++.|.|++|+||||++..|...+...|.+|.++.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 36779999999999999999999888888877664
No 366
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.82 E-value=0.078 Score=55.76 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=27.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
+..|.|.|++|+||||+|+.|...+ |..+..+...++
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~ 113 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDV 113 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCc
Confidence 4467899999999999999998887 445554544443
No 367
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.80 E-value=0.05 Score=52.92 Aligned_cols=36 Identities=36% Similarity=0.367 Sum_probs=27.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
..|.|.|++|+||||+|+.|...+ +.....++...+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~ 91 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMI 91 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhc
Confidence 347899999999999999997775 445555555444
No 368
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.79 E-value=0.03 Score=59.76 Aligned_cols=39 Identities=31% Similarity=0.187 Sum_probs=29.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHc-C-----CCeEEEecccc
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVT-G-----RKSATISIDDF 270 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~-G-----~~v~vISlDDF 270 (476)
-++||.|++|||||||.+.|..++... | .++..+.+|-.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~ 357 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIK 357 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCc
Confidence 389999999999999999999877532 2 24556666643
No 369
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.78 E-value=0.037 Score=47.65 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
..+-|+|.|.+|+|||||...|.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999988765
No 370
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.77 E-value=0.032 Score=49.34 Aligned_cols=22 Identities=32% Similarity=0.247 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
+-|+|.|++|+|||||.+.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999988765
No 371
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.75 E-value=0.039 Score=46.84 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=19.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
++-|+|.|++|+|||||...|.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHh
Confidence 4679999999999999987764
No 372
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.72 E-value=0.044 Score=48.37 Aligned_cols=26 Identities=23% Similarity=0.246 Sum_probs=21.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
....+-|+|.|.+|+|||||...|..
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhc
Confidence 34578899999999999999877653
No 373
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.71 E-value=0.034 Score=47.75 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+.+-|+|.|.+|+|||||...|.
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999988765
No 374
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.71 E-value=0.041 Score=51.15 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
..++-|+|.|.+|+|||||...|.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHc
Confidence 457899999999999999998765
No 375
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.67 E-value=0.043 Score=46.69 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
++-|+|.|++|+|||||...|.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 5779999999999999988765
No 376
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.64 E-value=0.061 Score=59.06 Aligned_cols=44 Identities=25% Similarity=0.193 Sum_probs=34.9
Q ss_pred CCcE-EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604 229 LPWW-YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL 272 (476)
Q Consensus 229 ~~P~-VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl 272 (476)
.+|. .|.+.|++|+|||++|+.|...+...+..++.|.+-.|.-
T Consensus 518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 518 KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 4454 6889999999999999999998855456777777777663
No 377
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.61 E-value=0.038 Score=48.63 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=20.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
....|+|.|.+|+|||||.+.|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346799999999999999988764
No 378
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.61 E-value=0.043 Score=51.46 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
.-|.|.|+||+||||+|..|..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999987765
No 379
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.60 E-value=0.062 Score=56.93 Aligned_cols=40 Identities=23% Similarity=0.071 Sum_probs=31.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
..|.=|-+.||+|+|||+||++|+..+ |.....++..++.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELV 280 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGC
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhh
Confidence 456678899999999999999999887 4456666666654
No 380
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.59 E-value=0.045 Score=47.30 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
..++-|+|.|.+|+|||||...|.
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHH
Confidence 456889999999999999987764
No 381
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.57 E-value=0.085 Score=55.47 Aligned_cols=40 Identities=23% Similarity=0.085 Sum_probs=31.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
..|.=|-+.||+|+|||++|++|+..+ |.....|+..++.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELI 253 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGC
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhh
Confidence 446668899999999999999999887 4456666666654
No 382
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.56 E-value=0.055 Score=47.89 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
...+-|+|.|.+|||||||...|.
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999987765
No 383
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.54 E-value=0.035 Score=60.37 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=27.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc-CC-----CeEEEecc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVT-GR-----KSATISID 268 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~-G~-----~v~vISlD 268 (476)
++||.|++|||||||.+.|..++... |. .+..+.++
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~ 421 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK 421 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEeccc
Confidence 69999999999999999999887543 32 34555555
No 384
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.54 E-value=0.035 Score=54.42 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
-+++|.|++|||||||.+.|..++
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 389999999999999999887654
No 385
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.52 E-value=0.056 Score=47.02 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+.+-|+|.|.+|+|||||...|.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999999987765
No 386
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.50 E-value=0.052 Score=45.82 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=18.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~ 253 (476)
-|+|.|.+|+|||||...|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999987763
No 387
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=93.46 E-value=0.052 Score=54.98 Aligned_cols=41 Identities=20% Similarity=0.139 Sum_probs=27.2
Q ss_pred CCcEEEEEe-CCCCCcHHHHHHHHHHHHH------HcCCCeEEEeccc
Q 044604 229 LPWWYIGFS-APQGCGKTTLAFALDYLFR------VTGRKSATISIDD 269 (476)
Q Consensus 229 ~~P~VIGIa-G~sGSGKTTLA~~L~~lL~------~~G~~v~vISlDD 269 (476)
..+.+|+|. |--|+||||+|..|+..|. ..|.+|.+|-+|-
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~ 156 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDP 156 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESS
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence 456677777 7889999999999999997 5689999999983
No 388
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.45 E-value=0.032 Score=48.48 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+++-|+|.|++|+|||||...|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 457889999999999999987654
No 389
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.44 E-value=0.053 Score=46.80 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
..++-|+|.|.+|+|||||...|.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHH
Confidence 457889999999999999987764
No 390
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.43 E-value=0.048 Score=49.19 Aligned_cols=25 Identities=32% Similarity=0.181 Sum_probs=21.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
...+-|.|.|++|+|||||...|..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3466799999999999999987764
No 391
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.43 E-value=0.031 Score=58.55 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYL 254 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~l 254 (476)
+-|||.|++|||||||.+.|...
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCc
Confidence 34999999999999999998754
No 392
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.41 E-value=0.045 Score=48.34 Aligned_cols=24 Identities=29% Similarity=0.064 Sum_probs=20.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
...+-|+|.|++|+|||||...|.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHh
Confidence 456889999999999999988765
No 393
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.40 E-value=0.075 Score=56.18 Aligned_cols=38 Identities=34% Similarity=0.145 Sum_probs=29.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
|.=|.|.||+|+||||+|++|...+ +.....++..+|.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~ 86 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFV 86 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHH
Confidence 3347799999999999999999876 4566667666664
No 394
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.39 E-value=0.056 Score=47.98 Aligned_cols=24 Identities=21% Similarity=0.108 Sum_probs=20.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
...+-|+|.|.+|+|||||...|.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHH
Confidence 457889999999999999987764
No 395
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.36 E-value=0.055 Score=46.42 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=21.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
...+-|+|.|.+|+|||||...|..
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHc
Confidence 4468899999999999999987653
No 396
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.35 E-value=0.055 Score=46.82 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=20.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
+.+-|+|.|.+|+|||||...|.
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999997764
No 397
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.34 E-value=0.042 Score=56.20 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=20.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
+++|.|++|||||||.+.|...+
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 89999999999999998887544
No 398
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.32 E-value=0.079 Score=50.77 Aligned_cols=35 Identities=9% Similarity=-0.026 Sum_probs=27.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
+|.|.|+.|+|||||++.+...+. ..+..+...++
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~~ 66 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLRKF 66 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---CCEEEEEGGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcC---CCEEEEEchhh
Confidence 788999999999999998887663 34566666654
No 399
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.29 E-value=0.065 Score=47.29 Aligned_cols=25 Identities=20% Similarity=-0.004 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
+-+.+|.|+.||||||+..+|...|
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4478999999999999999998776
No 400
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.041 Score=59.85 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=23.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCC
Confidence 48999999999999999999987754
No 401
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.26 E-value=0.053 Score=47.72 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=20.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
...+-|+|.|.+|+|||||.+.|..
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhc
Confidence 4578899999999999999987653
No 402
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.25 E-value=0.052 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHH
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+.|.|++|+||||+++.|...+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998875
No 403
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.24 E-value=0.042 Score=59.69 Aligned_cols=37 Identities=32% Similarity=0.265 Sum_probs=28.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc-C-----CCeEEEeccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVT-G-----RKSATISIDD 269 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~-G-----~~v~vISlDD 269 (476)
++||.|++|||||||.+.|..++... | .++..+.+|-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~ 426 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYI 426 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCc
Confidence 79999999999999999999877532 2 2455666664
No 404
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.22 E-value=0.064 Score=57.02 Aligned_cols=35 Identities=37% Similarity=0.318 Sum_probs=27.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
|.|.|++|+|||||+++|...+. .....++.-+|.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~ 101 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV 101 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHH
Confidence 88999999999999999998763 455556655554
No 405
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.21 E-value=0.044 Score=48.19 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
..++-|+|.|.+|+|||||...|.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 356789999999999999998775
No 406
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.20 E-value=0.063 Score=47.30 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=20.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
..+++-|+|.|.+|+|||||...|.
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHH
Confidence 3567899999999999999987764
No 407
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.20 E-value=0.062 Score=47.54 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=21.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
....+-|+|.|.+|+|||||...|.
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~ 42 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFT 42 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHh
Confidence 3557889999999999999987765
No 408
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.20 E-value=0.072 Score=47.39 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=21.8
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 227 IYLPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 227 ~~~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+.+.+-|+|.|.+|+|||||...+.
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHh
Confidence 34567899999999999999997654
No 409
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.17 E-value=0.073 Score=55.03 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
|.-|-+.||+|+|||++|+.|+..+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 34577899999999999999999884
No 410
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.16 E-value=0.066 Score=53.88 Aligned_cols=38 Identities=26% Similarity=0.116 Sum_probs=28.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
+.-|.|.|++|+|||++|+.|...+ +..+..++..++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLT 185 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhh
Confidence 4567899999999999999997765 4455555555443
No 411
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=93.15 E-value=0.041 Score=55.71 Aligned_cols=30 Identities=27% Similarity=0.206 Sum_probs=23.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTG 259 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G 259 (476)
+.+.|.|-|+-||||||+++.|++.|+..|
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 357899999999999999999999987654
No 412
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.12 E-value=0.047 Score=53.54 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
..|-|.|++|+||||+|+.+...+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5677999999999999999999885
No 413
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.11 E-value=0.063 Score=47.12 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=20.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
..++-|+|.|.+|+|||||...|.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHH
Confidence 456789999999999999987765
No 414
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.10 E-value=0.095 Score=54.17 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=27.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCC-CeEEE
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGR-KSATI 265 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~-~v~vI 265 (476)
.+.|.|+.|+||||++..+...|...|. .+.++
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 6789999999999999998888877666 45444
No 415
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.08 E-value=0.066 Score=47.10 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=21.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
...+-|+|.|.+|+|||||...|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 3467899999999999999987754
No 416
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.06 E-value=0.063 Score=60.02 Aligned_cols=43 Identities=26% Similarity=0.213 Sum_probs=32.5
Q ss_pred CCc-EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPW-WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P-~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
.+| -.|.|.|++|+|||++|+.|...+...+...+.|.+..|.
T Consensus 585 ~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 585 NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp SSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 344 3788999999999999999999885444456666665554
No 417
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.05 E-value=0.069 Score=59.64 Aligned_cols=27 Identities=33% Similarity=0.238 Sum_probs=23.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
..+.-|.|.|++||||||||++|...+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 345578999999999999999998776
No 418
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.05 E-value=0.048 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=21.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHH
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+.|.|++|+||||+|+.+...+.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 78999999999999999988774
No 419
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.03 E-value=0.044 Score=59.48 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=23.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
-++||.|++|||||||.+.|..++..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~p 143 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLIP 143 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCCC
Confidence 48999999999999999999887643
No 420
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.03 E-value=0.061 Score=47.02 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=20.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+++-|+|.|.+|+|||||...+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFN 39 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHh
Confidence 356889999999999999987765
No 421
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.03 E-value=0.06 Score=56.22 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=32.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCCeEEEeccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVT-GRKSATISIDD 269 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~-G~~v~vISlDD 269 (476)
--++.|+|++|+||||||..+...+... |.+|..+++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 3478899999999999998887766554 77898888865
No 422
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.00 E-value=0.061 Score=46.49 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=19.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+.+-|+|.|.+|+|||||...+.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHh
Confidence 346789999999999999987665
No 423
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.00 E-value=0.066 Score=51.85 Aligned_cols=26 Identities=38% Similarity=0.156 Sum_probs=22.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
.|.++-+.|++|+||||+++.+...+
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 45578899999999999999998776
No 424
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.98 E-value=0.086 Score=54.89 Aligned_cols=40 Identities=25% Similarity=0.102 Sum_probs=30.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY 271 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY 271 (476)
..|.=|-+.||+|+|||++|++|+..+ |.....|+..++.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELV 219 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGS
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhh
Confidence 345567899999999999999999887 4456666665554
No 425
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.95 E-value=0.054 Score=47.11 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=20.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
...+-|+|.|.+|+|||||...|.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHH
Confidence 346889999999999999998765
No 426
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.95 E-value=0.021 Score=67.10 Aligned_cols=67 Identities=19% Similarity=0.346 Sum_probs=42.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc-C------------------CCeEEEeccccccCHHHHHHHHHcccCCcccccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVT-G------------------RKSATISIDDFYLTAEGQAKLREANRGNALLEFR 293 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~-G------------------~~v~vISlDDFYl~~~er~~la~~~p~npLl~~r 293 (476)
.|||.|++|||||||++.|.+++... | .++.+|++|-|.....-++.+. .
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~-----------~ 1175 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENII-----------Y 1175 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHS-----------S
T ss_pred EEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHh-----------c
Confidence 69999999999999999998776432 1 1355666666665544333321 1
Q ss_pred C-CCCCccHHHHHHHHHH
Q 044604 294 G-NAGSHDLQLSVETLTA 310 (476)
Q Consensus 294 G-~P~t~D~~lL~e~L~~ 310 (476)
| .|..++-+.+.+.++.
T Consensus 1176 gld~~~~sd~ei~~Al~~ 1193 (1321)
T 4f4c_A 1176 GLDPSSVTMAQVEEAARL 1193 (1321)
T ss_dssp SSCTTTSCHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHH
Confidence 2 2455666666665544
No 427
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.95 E-value=0.065 Score=45.73 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~ 252 (476)
+-|+|.|.+|+|||||...|.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999998774
No 428
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.94 E-value=0.068 Score=47.71 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=20.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
....+-|+|.|.+|+|||||...|.
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHH
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHH
Confidence 3567899999999999999998764
No 429
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.94 E-value=0.054 Score=47.24 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=19.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
..+.|+|.|.+|+|||||...|.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34578899999999999998764
No 430
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.93 E-value=0.061 Score=57.53 Aligned_cols=29 Identities=24% Similarity=0.103 Sum_probs=24.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
.+--++||.|++|||||||.+.|..++..
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 34469999999999999999999887643
No 431
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.90 E-value=0.044 Score=64.24 Aligned_cols=24 Identities=25% Similarity=0.628 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+|||.|++|||||||++.|..++.
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 799999999999999999987764
No 432
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.87 E-value=0.048 Score=58.56 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=22.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
.++|.|++|+||||||+.|..++..
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCc
Confidence 6889999999999999999998754
No 433
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.86 E-value=0.072 Score=46.90 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
...+-|+|.|.+|+|||||...|.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~ 43 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYA 43 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHH
Confidence 446889999999999999997764
No 434
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.85 E-value=0.06 Score=52.84 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=28.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
-|-|.|++|+|||++|+.|.......+...+.+.+..+
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred cEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 35689999999999999999876544445556655544
No 435
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.83 E-value=0.055 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
.+.|+|.|++|||||||.+.|..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999988854
No 436
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.83 E-value=0.06 Score=50.57 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=20.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
..++.|+|.|.+|+|||||...|.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSIL 43 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHh
Confidence 456889999999999999998765
No 437
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.83 E-value=0.048 Score=52.22 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
.|.|.||+|+||||+|..|+..+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998874
No 438
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.78 E-value=0.045 Score=52.19 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=21.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHH
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+.|.|++|+||||+|+.+...+.
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 78999999999999999998874
No 439
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.77 E-value=0.062 Score=48.33 Aligned_cols=25 Identities=24% Similarity=0.040 Sum_probs=19.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
.+.+.|+|.|.+|+|||||...|..
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999987753
No 440
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.77 E-value=0.052 Score=47.15 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
+++-|+|.|.+|+|||||...|.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHH
Confidence 46789999999999999987765
No 441
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=92.76 E-value=0.13 Score=54.69 Aligned_cols=39 Identities=26% Similarity=0.198 Sum_probs=34.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD 269 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD 269 (476)
..++-++|..|+||||+|..|...|.+.|.+|.+|.+|-
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp 365 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP 365 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCC
Confidence 356677899999999999999999988899999999993
No 442
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.74 E-value=0.08 Score=47.00 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
.+.+-|+|.|.+|+|||||...|..
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4567899999999999999877653
No 443
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.74 E-value=0.072 Score=46.86 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=20.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
+..++-|+|.|.+|+|||||...|.
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHh
Confidence 4567789999999999999987764
No 444
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.73 E-value=0.058 Score=48.57 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
...+-|+|.|.+|+|||||...|.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999988763
No 445
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.72 E-value=0.073 Score=47.07 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=21.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
++.+-|+|.|.+|+|||||...|.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~ 43 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIA 43 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999988775
No 446
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.70 E-value=0.056 Score=46.01 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~ 252 (476)
+-|+|.|.+|+|||||.+.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 568999999999999987763
No 447
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.70 E-value=0.072 Score=46.84 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
+.+-|+|.|.+|+|||||...|.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 46789999999999999998765
No 448
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=92.68 E-value=0.055 Score=54.85 Aligned_cols=28 Identities=18% Similarity=0.031 Sum_probs=25.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRV 257 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~ 257 (476)
+++.|.|.|+-||||||+++.|+..|..
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4689999999999999999999999865
No 449
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.66 E-value=0.072 Score=55.11 Aligned_cols=39 Identities=33% Similarity=0.403 Sum_probs=27.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
.|.-|.|.||+|+|||++|++|...+. +..+..++..++
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l 204 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDL 204 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC--
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHH
Confidence 345678999999999999999998762 334445555544
No 450
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.64 E-value=0.093 Score=54.92 Aligned_cols=36 Identities=22% Similarity=0.126 Sum_probs=28.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCC--eEEEecc
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFRVTGRK--SATISID 268 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~--v~vISlD 268 (476)
.++|.|++|+|||||+..|...+.+.+.. |+++-+|
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIG 213 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID 213 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEES
T ss_pred EEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEec
Confidence 69999999999999999999888765443 3444444
No 451
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.61 E-value=0.059 Score=48.08 Aligned_cols=23 Identities=30% Similarity=0.249 Sum_probs=18.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
+++-|+|.|.+|+|||||.+.+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 45679999999999999988765
No 452
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.61 E-value=0.06 Score=48.47 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=19.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
+++-|+|.|++|+|||||.+.+.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 45679999999999999988764
No 453
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.61 E-value=0.078 Score=51.73 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+..+.|.|+.|+||||+++.+...+.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34678999999999999999988874
No 454
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.60 E-value=0.066 Score=47.52 Aligned_cols=24 Identities=13% Similarity=0.219 Sum_probs=21.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+.+-|+|.|.+|+|||||...|.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHH
T ss_pred CCceEEEEECcCCCCHHHHHHHHh
Confidence 457889999999999999987765
No 455
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.60 E-value=0.085 Score=46.80 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=20.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
....+-|+|.|.+|+|||||...+.
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHH
Confidence 3456889999999999999987665
No 456
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.53 E-value=0.047 Score=64.21 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=21.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
.|||.|++|||||||++.|...+.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSC
T ss_pred EEEEEecCCCcHHHHHHHhccccc
Confidence 799999999999999998877654
No 457
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=92.53 E-value=0.044 Score=59.32 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=21.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
.|||.|++|||||||.+.|..++.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-
T ss_pred eEEEECCCCChHHHHHHHHhCCCC
Confidence 399999999999999999998763
No 458
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.52 E-value=0.081 Score=47.02 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=19.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
..+-|+|.|.+|+|||||...|.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~ 29 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYA 29 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHh
Confidence 45789999999999999987764
No 459
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.51 E-value=0.073 Score=45.17 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~ 253 (476)
-|+|.|.+|+|||||...+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999987753
No 460
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=92.50 E-value=0.084 Score=54.12 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=32.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEec
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISI 267 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISl 267 (476)
.|+.++|..|+||||+|..|+..+...|.+|.+|.+
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 477789999999999999999999888999988876
No 461
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.50 E-value=0.098 Score=54.98 Aligned_cols=37 Identities=27% Similarity=0.243 Sum_probs=27.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
|.-|.+.|++|+||||+|+.|+..+ +.....+....|
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l---~~~~~~v~~~~~ 86 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKF 86 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGGG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc---CCCceeecchhh
Confidence 3457799999999999999999887 344444444333
No 462
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.47 E-value=0.046 Score=64.08 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=22.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
-++||.|++|||||||.+.|..++.
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999887664
No 463
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.47 E-value=0.077 Score=47.41 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+.+-|+|.|.+|+|||||...|.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~ 45 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFV 45 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEECCCCcCHHHHHHHHH
Confidence 457889999999999999988765
No 464
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.47 E-value=0.052 Score=53.39 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=20.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
-.+-|+|.|++|+|||||.+.|..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 357889999999999999998764
No 465
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.40 E-value=0.068 Score=55.57 Aligned_cols=26 Identities=23% Similarity=0.079 Sum_probs=21.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
-.+-|+|.|++|||||||.+.|....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCC
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCC
Confidence 35678999999999999999887543
No 466
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.33 E-value=0.084 Score=46.68 Aligned_cols=25 Identities=24% Similarity=0.102 Sum_probs=20.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
...++-|+|.|.+|+|||||...+.
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~ 44 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFS 44 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHH
T ss_pred cceeeEEEEECcCCCCHHHHHHHHh
Confidence 3457889999999999999987764
No 467
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.33 E-value=0.03 Score=56.01 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 232 WYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 232 ~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
-+++|.|++|||||||.+.|...+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 389999999999999999887554
No 468
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.32 E-value=0.083 Score=45.69 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
.+.+-|+|.|.+|+|||||...+..
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3567899999999999999877653
No 469
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.31 E-value=0.065 Score=46.98 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=19.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 228 YLPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 228 ~~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
..+.+-|+|.|.+|+|||||...|.
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~ 42 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFS 42 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHH
T ss_pred CCceeEEEEECCCCCCHHHHHHHHh
Confidence 3456889999999999999987765
No 470
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.30 E-value=0.08 Score=47.28 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+.+-|+|.|.+|+|||||...+.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999998763
No 471
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.28 E-value=0.074 Score=52.05 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=29.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH--H----------HcC----CCeEEEecccc
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLF--R----------VTG----RKSATISIDDF 270 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL--~----------~~G----~~v~vISlDDF 270 (476)
.-++.|.|++||||||||..+.... . ..| .+|..|++++=
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 4589999999999999998877542 2 123 46777777763
No 472
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.26 E-value=0.04 Score=59.85 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=17.3
Q ss_pred EEEEeCCCCCcHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFAL 251 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L 251 (476)
++||.|++|||||||.+.|
T Consensus 350 ~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEECSTTSSHHHHHTTT
T ss_pred EEEEEeeCCCCHHHHHHHH
Confidence 8999999999999999654
No 473
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.23 E-value=0.086 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+++-|+|.|.+|+|||||...|.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEEEEECcCCCCHHHHHHHHH
Confidence 457889999999999999998775
No 474
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.22 E-value=0.054 Score=51.45 Aligned_cols=23 Identities=43% Similarity=0.518 Sum_probs=20.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHH
Q 044604 234 IGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+.|.|++|+||||+|+.+...+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc
Confidence 77999999999999999998774
No 475
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.20 E-value=0.085 Score=46.08 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
+++-|+|.|.+|+|||||...|.
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~ 36 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFT 36 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999987764
No 476
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.19 E-value=0.084 Score=45.99 Aligned_cols=27 Identities=22% Similarity=-0.010 Sum_probs=21.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL 255 (476)
...+-|.|.|.+|+|||||.+.|...+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence 346789999999999999987665543
No 477
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.08 E-value=0.098 Score=48.00 Aligned_cols=24 Identities=17% Similarity=0.071 Sum_probs=20.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
...+-|+|.|.+|+|||||...|.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~ 50 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVS 50 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 356789999999999999988764
No 478
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.05 E-value=0.089 Score=46.77 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=20.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
...+-|+|.|.+|+|||||...|.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHh
Confidence 345779999999999999998775
No 479
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.02 E-value=0.077 Score=52.01 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
..+|+|.|++|+|||||.+.|.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~ 29 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLL 29 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999998876
No 480
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.97 E-value=0.11 Score=46.38 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=19.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
...+-|+|.|.+|+|||||...|.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~ 41 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFV 41 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHH
Confidence 446789999999999999997765
No 481
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.93 E-value=0.1 Score=50.74 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=20.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 044604 234 IGFSAPQGCGKTTLAFALDYLF 255 (476)
Q Consensus 234 IGIaG~sGSGKTTLA~~L~~lL 255 (476)
|.+.|++|+|||++|+.|...+
T Consensus 49 vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6689999999999999998877
No 482
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.87 E-value=0.099 Score=54.84 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=28.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH---H-HcCCCeEEEecccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLF---R-VTGRKSATISIDDF 270 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL---~-~~G~~v~vISlDDF 270 (476)
.+.+|+|.|+.|+||||||..+.... . .+...+.-++.+..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 45789999999999999998876432 1 22224555666554
No 483
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.87 E-value=0.074 Score=46.89 Aligned_cols=24 Identities=21% Similarity=0.022 Sum_probs=19.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+.+-|+|.|.+|+|||||...|.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~ 42 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLK 42 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTS
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 456889999999999999987765
No 484
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.84 E-value=0.1 Score=47.53 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=20.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
...+-|+|.|.+|+|||||...|..
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Confidence 4568899999999999999987653
No 485
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.83 E-value=0.095 Score=47.65 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=21.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
...+-|+|.|.+|+|||||.+.|..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHh
Confidence 4567899999999999999987653
No 486
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.83 E-value=0.12 Score=47.64 Aligned_cols=26 Identities=19% Similarity=-0.027 Sum_probs=23.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 231 WWYIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 231 P~VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
|-+..|.|+.||||||+..+|...|.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45888999999999999999988774
No 487
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=91.82 E-value=0.098 Score=55.23 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
.+.+|+|.|..|+||||||..+..
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999998774
No 488
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.81 E-value=0.074 Score=46.28 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=17.7
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~ 252 (476)
-|+|.|.+|+|||||...|.
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999998765
No 489
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.78 E-value=0.1 Score=52.65 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604 233 YIGFSAPQGCGKTTLAFALDYLFR 256 (476)
Q Consensus 233 VIGIaG~sGSGKTTLA~~L~~lL~ 256 (476)
+.+|.|+.||||||+-.+|...+-
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 677999999999999999987763
No 490
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.77 E-value=0.088 Score=55.61 Aligned_cols=38 Identities=29% Similarity=0.185 Sum_probs=27.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF 270 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF 270 (476)
.|.-|.|.|++|+|||++|++|...+ +.....++..++
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l 274 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 274 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHh
Confidence 44558899999999999999998765 445555554443
No 491
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.77 E-value=0.16 Score=57.18 Aligned_cols=45 Identities=29% Similarity=0.146 Sum_probs=31.0
Q ss_pred CCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604 219 CPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS 266 (476)
Q Consensus 219 ~~~~~~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS 266 (476)
+...|..-.-..|.=|-+.||+|+|||+||++|+..+ |.....|+
T Consensus 226 ~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~ 270 (806)
T 3cf2_A 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLIN 270 (806)
T ss_dssp CCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEE
T ss_pred CHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEE
Confidence 3434433333567788999999999999999998776 33444444
No 492
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.77 E-value=0.11 Score=46.09 Aligned_cols=24 Identities=17% Similarity=0.016 Sum_probs=19.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
...+-|+|.|.+|+|||||...+.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999999987765
No 493
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.75 E-value=0.071 Score=47.14 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=21.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALDY 253 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~~ 253 (476)
...+-|+|.|.+|+|||||...|..
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhc
Confidence 4567899999999999999987654
No 494
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.73 E-value=0.096 Score=51.41 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=21.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 227 IYLPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 227 ~~~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
.+.++-.|+|.|.+|+|||||...|.
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~ 31 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLL 31 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHh
Confidence 34567799999999999999998765
No 495
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.72 E-value=0.089 Score=47.20 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=20.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
..++-|+|.|.+|+|||||.+.|.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHH
Confidence 457889999999999999998775
No 496
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.68 E-value=0.063 Score=48.47 Aligned_cols=24 Identities=25% Similarity=0.133 Sum_probs=20.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
...+.|+|.|.+|+|||||...|.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~ 50 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLC 50 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHh
Confidence 345678999999999999988765
No 497
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.65 E-value=0.14 Score=48.55 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=19.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHH
Q 044604 230 PWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 230 ~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
..+-|+|.|.+|+|||||...|.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~ 47 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFV 47 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHH
Confidence 45579999999999999998775
No 498
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=91.61 E-value=0.11 Score=49.26 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
..++-|+|.|.+|+|||||...|.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~ 42 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSIL 42 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHh
Confidence 567899999999999999997764
No 499
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.59 E-value=0.11 Score=46.85 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=20.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604 229 LPWWYIGFSAPQGCGKTTLAFALD 252 (476)
Q Consensus 229 ~~P~VIGIaG~sGSGKTTLA~~L~ 252 (476)
...+-|+|.|.+|+|||||...|.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~ 50 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFK 50 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHh
Confidence 456889999999999999998764
No 500
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=91.58 E-value=0.18 Score=47.79 Aligned_cols=33 Identities=18% Similarity=0.061 Sum_probs=28.2
Q ss_pred EEEEeCC-CCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604 233 YIGFSAP-QGCGKTTLAFALDYLFRVTGRKSATI 265 (476)
Q Consensus 233 VIGIaG~-sGSGKTTLA~~L~~lL~~~G~~v~vI 265 (476)
.|.|+|. +|+||||++..|...|.+.|.+|..+
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~ 39 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCL 39 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence 4667765 99999999999999999999888764
Done!