BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044605
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 26/156 (16%)
Query: 124 GLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGR 183
L+ L+++ G PA + ++ +NL L+ RN P++ HLP L+ L ++G
Sbjct: 184 NLQSLRLEWTGIRSLPASI--ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241
Query: 184 MAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP---QHFSSLERIVIMSC------- 233
+ G G L+ L + +CS L LP + LE++ + C
Sbjct: 242 LRNYPPIFG------GRAPLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRLP 294
Query: 234 ---EQLLVSCTTL-PLLCELEIDGFGEVAWINRPVE 265
QL +C L P + ++D VA RP E
Sbjct: 295 SLIAQLPANCIILVPPHLQAQLDQHRPVA---RPAE 327
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Query: 296 LPEGLHKLSHITRISIVGSYLVSFPK-----GGLESLSFVRN-----------LTSLERL 339
P+ +LSH+ +I + L P GLE+L+ RN L L L
Sbjct: 96 FPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLREL 155
Query: 340 ELSRCPILKSFPE 352
+ CP L PE
Sbjct: 156 SIRACPELTELPE 168
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 296 LPEGLHKLSHITRISIVGSYLVSFPKGGLESLS 328
LP G+ +L+H+T +++ + L S P G + LS
Sbjct: 127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 294 ESLPEGL-HKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP 345
+SLP+G+ KL+++TR+ + + L S P+G + L+ ++ L SL +L P
Sbjct: 146 QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQL-SLNDNQLKSVP 197
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 101/238 (42%), Gaps = 43/238 (18%)
Query: 124 GLKELKVQNYGGTKFPAWL-GQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMG 182
GL+EL + ++ P+ L G S+ + LV+ + N C S + P L +L IKG
Sbjct: 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ--ISASNFPSLTHLSIKGNT 336
Query: 183 RMAKAGTTGGDQQAAKGFPCLRELSII-------NCSKLKGRLPQHFSSL-----ERIVI 230
+ + GT + LREL + +C L+ R H SL E + +
Sbjct: 337 KRLELGTG-----CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Query: 231 MSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGS 290
+ + C L LL ++A+ V+ D+ +P +VL
Sbjct: 392 KT--EAFKECPQLELL---------DLAFTRLKVK----DAQSPFQNLHLLKVLNLSHSL 436
Query: 291 PD--QESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI 346
D E L +GL L H+ ++ G++ FPKG ++ + ++ L LE L LS C +
Sbjct: 437 LDISSEQLFDGLPALQHL---NLQGNH---FPKGNIQKTNSLQTLGRLEILVLSFCDL 488
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 209 INCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGI 268
I CS + L HFS + + + S E LV L+CEL G V IN+ EA +
Sbjct: 69 IQCSGIHRSLGVHFSKVRSLTLDSWEPELVK-----LMCEL-----GNVI-INQIYEARV 117
Query: 269 --FDSSNPGPEKSRTEVLPW 286
PGP SR E W
Sbjct: 118 EAMAVKKPGPSCSRQEKEAW 137
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 209 INCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGI 268
I CS + L HFS + + + S E LV L+CEL G V IN+ EA +
Sbjct: 69 IQCSGIHRSLGVHFSKVRSLTLDSWEPELVK-----LMCEL-----GNVI-INQIYEARV 117
Query: 269 --FDSSNPGPEKSRTEVLPW 286
PGP SR E W
Sbjct: 118 EAMAVKKPGPSCSRQEKEAW 137
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 209 INCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGI 268
I CS + L HFS + + + S E LV L+CEL G V IN+ EA +
Sbjct: 69 IQCSGIHRSLGVHFSKVRSLTLDSWEPELVK-----LMCEL-----GNVI-INQIYEARV 117
Query: 269 --FDSSNPGPEKSRTEVLPW 286
PGP SR E W
Sbjct: 118 EAMAVKKPGPSCSRQEKEAW 137
>pdb|3PB3|A Chain A, Structure Of An Antibiotic Related Methyltransferase
pdb|3PB3|B Chain B, Structure Of An Antibiotic Related Methyltransferase
Length = 225
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 89 NVAEDAKEGNR----TTSSDSREVAEIQTRVLEMLKPHYGLKE 127
NVA+ AK+ TT SDS E AEI+ R L +L Y L E
Sbjct: 124 NVADMAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSE 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,646,264
Number of Sequences: 62578
Number of extensions: 477267
Number of successful extensions: 818
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 816
Number of HSP's gapped (non-prelim): 9
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)