Query 044605
Match_columns 405
No_of_seqs 143 out of 2483
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:58:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.8 1.7E-19 3.7E-24 195.0 19.7 300 17-372 580-908 (1153)
2 PLN00113 leucine-rich repeat r 99.8 5.4E-20 1.2E-24 197.6 14.1 59 24-84 186-245 (968)
3 PLN00113 leucine-rich repeat r 99.8 3.4E-20 7.3E-25 199.2 11.0 219 25-256 139-368 (968)
4 PLN03210 Resistant to P. syrin 99.7 7.5E-17 1.6E-21 174.5 16.3 298 15-371 602-944 (1153)
5 KOG0444 Cytoskeletal regulator 99.7 1.4E-19 3.1E-24 172.1 -7.0 319 25-370 31-375 (1255)
6 KOG4194 Membrane glycoprotein 99.6 9.5E-17 2.1E-21 151.9 3.4 171 25-210 77-254 (873)
7 KOG4194 Membrane glycoprotein 99.6 4.8E-17 1E-21 153.9 0.4 337 27-399 53-429 (873)
8 KOG0472 Leucine-rich repeat pr 99.6 1.6E-17 3.5E-22 150.7 -8.0 61 118-182 247-308 (565)
9 KOG0444 Cytoskeletal regulator 99.5 9.9E-17 2.2E-21 152.9 -9.0 335 24-394 5-370 (1255)
10 KOG0618 Serine/threonine phosp 99.5 3.3E-16 7.3E-21 155.4 -7.5 235 121-396 239-510 (1081)
11 KOG0472 Leucine-rich repeat pr 99.5 1.8E-16 3.9E-21 143.9 -9.5 329 15-368 104-539 (565)
12 PRK15387 E3 ubiquitin-protein 99.3 1.9E-11 4.1E-16 124.6 13.2 176 123-349 282-460 (788)
13 PRK15387 E3 ubiquitin-protein 99.3 3.2E-11 7E-16 123.0 11.8 191 123-368 262-456 (788)
14 KOG0618 Serine/threonine phosp 99.2 2.3E-12 4.9E-17 128.6 -0.5 164 125-321 158-327 (1081)
15 PRK15370 E3 ubiquitin-protein 99.1 2.5E-10 5.5E-15 117.0 7.4 178 124-345 242-426 (754)
16 KOG0617 Ras suppressor protein 99.0 6.5E-12 1.4E-16 102.0 -5.5 82 119-211 29-112 (264)
17 KOG0617 Ras suppressor protein 98.9 3.3E-11 7.1E-16 97.9 -3.9 158 146-353 31-191 (264)
18 KOG4658 Apoptotic ATPase [Sign 98.9 4.6E-10 1E-14 116.9 2.9 68 14-84 559-627 (889)
19 PRK15370 E3 ubiquitin-protein 98.9 1.2E-08 2.5E-13 105.0 12.1 114 123-255 178-294 (754)
20 KOG4237 Extracellular matrix p 98.7 3.3E-09 7.1E-14 97.1 1.9 257 124-400 68-400 (498)
21 KOG4237 Extracellular matrix p 98.7 1.2E-09 2.7E-14 99.8 -2.2 193 146-365 272-496 (498)
22 cd00116 LRR_RI Leucine-rich re 98.5 8.5E-10 1.8E-14 103.5 -8.4 260 123-397 23-318 (319)
23 KOG4658 Apoptotic ATPase [Sign 98.5 2.3E-08 5.1E-13 104.3 1.5 204 10-240 580-787 (889)
24 KOG3207 Beta-tubulin folding c 98.4 3.7E-08 8.1E-13 91.4 -1.3 200 122-345 120-337 (505)
25 KOG3207 Beta-tubulin folding c 98.4 5E-08 1.1E-12 90.6 -0.7 199 145-366 118-335 (505)
26 cd00116 LRR_RI Leucine-rich re 98.3 2.4E-07 5.2E-12 86.9 2.8 242 146-401 21-293 (319)
27 PRK15386 type III secretion pr 98.2 9.1E-06 2E-10 77.0 10.3 161 168-372 49-215 (426)
28 KOG4341 F-box protein containi 98.1 2.5E-08 5.4E-13 92.0 -8.2 110 123-236 138-255 (483)
29 PF14580 LRR_9: Leucine-rich r 98.0 1.9E-06 4.2E-11 72.6 2.1 60 302-367 86-150 (175)
30 PF13855 LRR_8: Leucine rich r 98.0 9.2E-06 2E-10 55.9 4.9 57 304-367 1-59 (61)
31 PF13855 LRR_8: Leucine rich r 98.0 1.2E-05 2.5E-10 55.4 5.2 46 294-345 14-60 (61)
32 PF14580 LRR_9: Leucine-rich r 98.0 1.3E-06 2.9E-11 73.5 0.4 123 121-254 17-150 (175)
33 COG4886 Leucine-rich repeat (L 97.8 1.4E-05 3.1E-10 77.4 3.5 167 123-346 116-289 (394)
34 KOG1259 Nischarin, modulator o 97.8 4.7E-06 1E-10 74.2 0.1 200 122-346 181-411 (490)
35 PRK15386 type III secretion pr 97.8 0.0001 2.2E-09 70.0 8.2 123 115-257 44-169 (426)
36 KOG1259 Nischarin, modulator o 97.5 6.7E-06 1.5E-10 73.2 -2.9 127 26-212 284-410 (490)
37 COG4886 Leucine-rich repeat (L 97.5 0.00011 2.3E-09 71.3 4.9 65 295-367 223-287 (394)
38 KOG0532 Leucine-rich repeat (L 97.5 5.6E-06 1.2E-10 79.7 -3.9 160 130-318 82-248 (722)
39 PF12799 LRR_4: Leucine Rich r 97.5 5.5E-05 1.2E-09 48.0 1.8 31 26-56 1-31 (44)
40 KOG4341 F-box protein containi 97.4 2.6E-06 5.7E-11 79.0 -7.3 200 148-372 138-361 (483)
41 PLN03150 hypothetical protein; 97.3 0.00033 7.1E-09 71.8 5.8 102 246-368 420-526 (623)
42 PF12799 LRR_4: Leucine Rich r 97.3 0.00021 4.6E-09 45.3 2.7 40 304-351 1-40 (44)
43 PF00560 LRR_1: Leucine Rich R 97.0 0.00023 4.9E-09 37.7 0.5 22 27-48 1-22 (22)
44 KOG2120 SCF ubiquitin ligase, 97.0 1.4E-05 3E-10 71.2 -6.8 14 300-313 359-372 (419)
45 KOG2120 SCF ubiquitin ligase, 97.0 2.9E-05 6.2E-10 69.3 -4.9 171 148-367 185-373 (419)
46 PLN03150 hypothetical protein; 96.8 0.0019 4.1E-08 66.3 6.1 107 225-352 420-533 (623)
47 KOG1909 Ran GTPase-activating 96.8 0.00026 5.6E-09 64.6 -0.6 134 119-256 153-310 (382)
48 KOG3665 ZYG-1-like serine/thre 96.7 0.00032 7E-09 72.0 -0.5 54 199-253 146-204 (699)
49 KOG1909 Ran GTPase-activating 96.6 0.00027 5.9E-09 64.4 -1.5 47 113-159 82-131 (382)
50 KOG3665 ZYG-1-like serine/thre 96.6 0.00033 7.2E-09 71.9 -1.2 100 148-254 122-230 (699)
51 KOG0531 Protein phosphatase 1, 96.5 0.00061 1.3E-08 66.4 -0.2 102 119-232 91-195 (414)
52 KOG0532 Leucine-rich repeat (L 96.3 0.0017 3.8E-08 63.1 1.4 134 14-181 133-270 (722)
53 KOG1947 Leucine rich repeat pr 96.0 0.00041 8.8E-09 68.9 -4.7 109 147-257 187-308 (482)
54 KOG2739 Leucine-rich acidic nu 95.9 0.0037 7.9E-08 55.1 1.5 107 221-367 41-153 (260)
55 KOG1644 U2-associated snRNP A' 94.9 0.052 1.1E-06 46.2 5.1 103 146-255 40-151 (233)
56 KOG0531 Protein phosphatase 1, 94.8 0.0042 9.2E-08 60.5 -1.9 32 25-56 94-125 (414)
57 PF13504 LRR_7: Leucine rich r 94.6 0.011 2.4E-07 28.9 0.3 16 27-42 2-17 (17)
58 KOG1947 Leucine rich repeat pr 94.5 0.0032 7E-08 62.4 -3.6 127 122-254 187-331 (482)
59 KOG1644 U2-associated snRNP A' 94.1 0.095 2.1E-06 44.7 4.8 62 118-180 59-122 (233)
60 KOG1859 Leucine-rich repeat pr 93.9 0.0016 3.5E-08 65.1 -6.9 105 237-368 180-290 (1096)
61 KOG1859 Leucine-rich repeat pr 93.6 0.0036 7.9E-08 62.7 -5.1 69 289-367 172-242 (1096)
62 KOG2982 Uncharacterized conser 93.4 0.098 2.1E-06 47.3 4.1 16 118-133 92-107 (418)
63 KOG2739 Leucine-rich acidic nu 92.9 0.039 8.5E-07 48.8 0.7 104 146-255 41-154 (260)
64 PF00560 LRR_1: Leucine Rich R 92.3 0.11 2.5E-06 27.2 1.8 18 305-322 1-18 (22)
65 PF13306 LRR_5: Leucine rich r 91.5 0.79 1.7E-05 36.1 6.9 48 222-275 11-60 (129)
66 smart00369 LRR_TYP Leucine-ric 91.3 0.096 2.1E-06 28.7 0.9 20 26-45 2-21 (26)
67 smart00370 LRR Leucine-rich re 91.3 0.096 2.1E-06 28.7 0.9 20 26-45 2-21 (26)
68 KOG2982 Uncharacterized conser 90.9 0.24 5.3E-06 44.9 3.4 126 122-256 70-211 (418)
69 smart00370 LRR Leucine-rich re 90.8 0.13 2.7E-06 28.2 1.0 22 303-324 1-22 (26)
70 smart00369 LRR_TYP Leucine-ric 90.8 0.13 2.7E-06 28.2 1.0 22 303-324 1-22 (26)
71 PF13306 LRR_5: Leucine rich r 89.9 1.6 3.4E-05 34.4 7.2 51 200-253 11-67 (129)
72 KOG2123 Uncharacterized conser 89.9 0.0092 2E-07 53.2 -6.2 101 222-365 18-125 (388)
73 KOG3864 Uncharacterized conser 89.1 0.053 1.2E-06 46.2 -2.0 66 302-372 123-191 (221)
74 KOG3864 Uncharacterized conser 88.3 0.088 1.9E-06 44.9 -1.3 79 149-232 102-185 (221)
75 KOG4579 Leucine-rich repeat (L 86.2 0.12 2.7E-06 41.3 -1.4 37 302-345 75-111 (177)
76 smart00367 LRR_CC Leucine-rich 85.0 0.54 1.2E-05 25.7 1.2 15 358-372 3-17 (26)
77 KOG2123 Uncharacterized conser 84.3 0.18 3.9E-06 45.2 -1.4 61 21-83 36-96 (388)
78 KOG4579 Leucine-rich repeat (L 83.7 0.061 1.3E-06 43.0 -4.1 52 292-351 88-139 (177)
79 COG5238 RNA1 Ran GTPase-activa 82.3 1.4 3E-05 39.7 3.2 49 111-159 80-131 (388)
80 smart00364 LRR_BAC Leucine-ric 80.6 1 2.2E-05 24.7 1.2 18 26-43 2-19 (26)
81 smart00365 LRR_SD22 Leucine-ri 65.9 3.3 7.1E-05 22.7 0.9 16 26-41 2-17 (26)
82 smart00368 LRR_RI Leucine rich 60.7 4.8 0.0001 22.4 1.0 14 26-39 2-15 (28)
83 PF13516 LRR_6: Leucine Rich r 60.0 2.6 5.7E-05 22.3 -0.2 14 26-39 2-15 (24)
84 COG5238 RNA1 Ran GTPase-activa 55.7 19 0.00042 32.7 4.3 109 146-257 90-227 (388)
85 PF05725 FNIP: FNIP Repeat; I 42.4 46 0.001 20.6 3.5 32 334-366 12-43 (44)
86 KOG3763 mRNA export factor TAP 25.3 33 0.00071 34.3 1.0 62 302-368 216-281 (585)
87 KOG3763 mRNA export factor TAP 24.8 34 0.00074 34.1 1.0 36 146-181 216-254 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1.7e-19 Score=194.95 Aligned_cols=300 Identities=19% Similarity=0.209 Sum_probs=187.1
Q ss_pred ccCchhhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhh
Q 044605 17 INGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKE 96 (405)
Q Consensus 17 l~~~~~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~ 96 (405)
+|+++......|++|++.++.++.+|..+ ...+|+.|++....- .........+.+|+ .+.+.........
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l--~~L~~~~~~l~~Lk-~L~Ls~~~~l~~i----- 650 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKL--EKLWDGVHSLTGLR-NIDLRGSKNLKEI----- 650 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccc--cccccccccCCCCC-EEECCCCCCcCcC-----
Confidence 34444444567888888888888888877 567888876432211 11122334555565 6666543322211
Q ss_pred cccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeC-CCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccE
Q 044605 97 GNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYG-GTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKN 175 (405)
Q Consensus 97 ~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~ 175 (405)
..+..+++|+.|++.+|. ...+|..+. .+++|+.|++++|..++.+|.-..+++|+.
T Consensus 651 --------------------p~ls~l~~Le~L~L~~c~~L~~lp~si~--~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~ 708 (1153)
T PLN03210 651 --------------------PDLSMATNLETLKLSDCSSLVELPSSIQ--YLNKLEDLDMSRCENLEILPTGINLKSLYR 708 (1153)
T ss_pred --------------------CccccCCcccEEEecCCCCccccchhhh--ccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence 123446778888887764 456677666 778888888888887777776557788888
Q ss_pred EeecCCCCCeeeCCC-C--------C-C---CCCCCCCCcccEEeeccCcccc--c---cC----CCCCCcccEEEEecc
Q 044605 176 LVIKGMGRMAKAGTT-G--------G-D---QQAAKGFPCLRELSIINCSKLK--G---RL----PQHFSSLERIVIMSC 233 (405)
Q Consensus 176 L~l~~~~~l~~~~~~-~--------~-~---~~~~~~~~~L~~L~l~~~~~l~--~---~l----~~~~~~L~~L~l~~c 233 (405)
|++.+|..++.++.. . + . ......+++|++|.+.++.... + .+ ...+++|+.|++++|
T Consensus 709 L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 709 LNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred EeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 888887766555430 0 0 0 0001124455555554432110 0 00 012467888888777
Q ss_pred CC---ccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccE
Q 044605 234 EQ---LLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITR 308 (405)
Q Consensus 234 ~~---l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~ 308 (405)
+. +|..+..+++|+.|++++|..++ .+|... .+++| +++++|..+ +.+|. ..++|+.
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~----~LP~~~--~L~sL~~L~Ls~c~~L---------~~~p~---~~~nL~~ 850 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLE----TLPTGI--NLESLESLDLSGCSRL---------RTFPD---ISTNISD 850 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcC----eeCCCC--CccccCEEECCCCCcc---------ccccc---cccccCE
Confidence 53 46777778888888888887776 665533 45666 777777554 34443 2356777
Q ss_pred EEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCcchHH
Q 044605 309 ISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCPDLEE 372 (405)
Q Consensus 309 L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~ 372 (405)
|+++++.++.+|.. +..+++|+.|++++|+.++.+|.. ..+++|+.+++.+|+.++.
T Consensus 851 L~Ls~n~i~~iP~s-------i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 851 LNLSRTGIEEVPWW-------IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred eECCCCCCccChHH-------HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 77777777777765 567778888888888888877765 4456778888888877753
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=5.4e-20 Score=197.62 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=35.3
Q ss_pred heeeEEEEEccCCCCc-cCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcc
Q 044605 24 IFVIYLILVGDLTESK-EMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILG 84 (405)
Q Consensus 24 ~~~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~ 84 (405)
.+++|++|++++|.+. .+|..++++.+|++|++..... ....+..++.+.+|+ .|.+..
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~-~L~L~~ 245 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL-SGEIPYEIGGLTSLN-HLDLVY 245 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc-CCcCChhHhcCCCCC-EEECcC
Confidence 4567788888877765 5677777777777776432221 122344455555555 555543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=3.4e-20 Score=199.19 Aligned_cols=219 Identities=16% Similarity=0.101 Sum_probs=115.5
Q ss_pred eeeEEEEEccCCCCc-cCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhccccccc
Q 044605 25 FVIYLILVGDLTESK-EMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSS 103 (405)
Q Consensus 25 ~~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~ 103 (405)
+++|++|++++|.++ .+|..++++.+|++|++....- ....+..++++.+|+ +|.+....-.... ......+..++
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~~~~l~~L~-~L~L~~n~l~~~~-p~~l~~l~~L~ 215 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL-VGKIPNSLTNLTSLE-FLTLASNQLVGQI-PRELGQMKSLK 215 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc-cccCChhhhhCcCCC-eeeccCCCCcCcC-ChHHcCcCCcc
Confidence 567888888888776 5777788888888887533221 122334455666666 6666443211111 11122222222
Q ss_pred CC-hhhHHHHHHHhccCCCCCCccEEEEEeeCC-CCCCcccCCCCCCCccEEEEEcCCCCCcCC-CCCCCCCccEEeecC
Q 044605 104 DS-REVAEIQTRVLEMLKPHYGLKELKVQNYGG-TKFPAWLGQSSFENLVVLRFRNCNQCTSLP-SVGHLPLLKNLVIKG 180 (405)
Q Consensus 104 ~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~ 180 (405)
.. ...+.........+..+++|+.|++.+|.. ..+|..+. .+++|+.|++++|.....+| .+..+++|++|++.+
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG--NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh--CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence 21 011111122334455667777777776653 34566555 66777777777766333444 366677777777766
Q ss_pred CCCCeeeCC-CCCCCCCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC---CccccCCCCCCcceEEEcC
Q 044605 181 MGRMAKAGT-TGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE---QLLVSCTTLPLLCELEIDG 253 (405)
Q Consensus 181 ~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~---~l~~~l~~l~~L~~L~l~~ 253 (405)
|.....++. ++ .+++|++|+++++ .+.+.+|. .+++|+.|++++|. .+|..+..+++|+.|++++
T Consensus 294 n~l~~~~p~~~~-------~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 294 NSLSGEIPELVI-------QLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred CeeccCCChhHc-------CCCCCcEEECCCC-ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence 543333332 22 2556666666554 22223332 45566666665543 2344455556666666665
Q ss_pred cCC
Q 044605 254 FGE 256 (405)
Q Consensus 254 ~~~ 256 (405)
|+.
T Consensus 366 n~l 368 (968)
T PLN00113 366 NNL 368 (968)
T ss_pred Cee
Confidence 543
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=7.5e-17 Score=174.51 Aligned_cols=298 Identities=20% Similarity=0.260 Sum_probs=191.0
Q ss_pred ccccCchhhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhh
Q 044605 15 ETINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDA 94 (405)
Q Consensus 15 ~~l~~~~~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~ 94 (405)
..+|..+. ..+|++|+++++.++.+|.++.++++|++|++..... ...++.+..+.+|+ .|.+.++......
T Consensus 602 ~~lP~~f~--~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~--l~~ip~ls~l~~Le-~L~L~~c~~L~~l--- 673 (1153)
T PLN03210 602 RCMPSNFR--PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKN--LKEIPDLSMATNLE-TLKLSDCSSLVEL--- 673 (1153)
T ss_pred CCCCCcCC--ccCCcEEECcCccccccccccccCCCCCEEECCCCCC--cCcCCccccCCccc-EEEecCCCCcccc---
Confidence 34555543 5799999999999999999999999999998543322 22344566677777 7777664433221
Q ss_pred hhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeC-CCCCCcccCCCCCCCccEEEEEcCCCC------------
Q 044605 95 KEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYG-GTKFPAWLGQSSFENLVVLRFRNCNQC------------ 161 (405)
Q Consensus 95 ~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~lp~~~~~~~l~~L~~L~l~~~~~~------------ 161 (405)
+..+..+.+|+.|++.+|. ...+|..+ .+++|+.|++++|..+
T Consensus 674 ---------------------p~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~~~~nL~~ 729 (1153)
T PLN03210 674 ---------------------PSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPDISTNISW 729 (1153)
T ss_pred ---------------------chhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCccccccccCCcCe
Confidence 2223334455555555432 23334322 2444555555554433
Q ss_pred --------CcCCCCCCCCCccEEeecCCCCCeeeCCCCC-CCCCCCCCCcccEEeeccCccccccCCC---CCCcccEEE
Q 044605 162 --------TSLPSVGHLPLLKNLVIKGMGRMAKAGTTGG-DQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIV 229 (405)
Q Consensus 162 --------~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~ 229 (405)
..+|....+++|++|.+.++........... .......+++|++|++++|+.+. .+|. .+++|+.|+
T Consensus 730 L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-~lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 730 LDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV-ELPSSIQNLHKLEHLE 808 (1153)
T ss_pred eecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc-ccChhhhCCCCCCEEE
Confidence 3444333445555555544321110000000 00112235799999999987776 5674 689999999
Q ss_pred EeccCCc---cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCC
Q 044605 230 IMSCEQL---LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLS 304 (405)
Q Consensus 230 l~~c~~l---~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~ 304 (405)
+.+|..+ |..+ .+++|+.|++++|..+. .++. .. +++ |+++++ +++.+|.++..++
T Consensus 809 Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~----~~p~-~~---~nL~~L~Ls~n----------~i~~iP~si~~l~ 869 (1153)
T PLN03210 809 IENCINLETLPTGI-NLESLESLDLSGCSRLR----TFPD-IS---TNISDLNLSRT----------GIEEVPWWIEKFS 869 (1153)
T ss_pred CCCCCCcCeeCCCC-CccccCEEECCCCCccc----cccc-cc---cccCEeECCCC----------CCccChHHHhcCC
Confidence 9999765 4444 68999999999998876 4443 22 344 566555 5678999999999
Q ss_pred CccEEEEeC-CcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCC--------------cCCccEEeecCCcc
Q 044605 305 HITRISIVG-SYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGL--------------LPSVVYLSIYLCPD 369 (405)
Q Consensus 305 ~L~~L~l~~-~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~--------------~~~L~~L~i~~c~~ 369 (405)
+|+.|++++ ++++.+|.. ...+++|+.+++++|..++.++.... .++...+.+.+|.+
T Consensus 870 ~L~~L~L~~C~~L~~l~~~-------~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~ 942 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSLN-------ISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFN 942 (1153)
T ss_pred CCCEEECCCCCCcCccCcc-------cccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccC
Confidence 999999999 899998876 57889999999999998876643221 12334567778876
Q ss_pred hH
Q 044605 370 LE 371 (405)
Q Consensus 370 l~ 371 (405)
+.
T Consensus 943 L~ 944 (1153)
T PLN03210 943 LD 944 (1153)
T ss_pred CC
Confidence 64
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.70 E-value=1.4e-19 Score=172.09 Aligned_cols=319 Identities=18% Similarity=0.192 Sum_probs=205.2
Q ss_pred eeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhcccccccC
Q 044605 25 FVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSD 104 (405)
Q Consensus 25 ~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~~ 104 (405)
+.+++.|.|..+.+..+|.+++.|.+|++|.+.+.. -.....+|..|..|+ .+.+.+..--+.........+..+..
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~--L~~vhGELs~Lp~LR-sv~~R~N~LKnsGiP~diF~l~dLt~ 107 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ--LISVHGELSDLPRLR-SVIVRDNNLKNSGIPTDIFRLKDLTI 107 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh--hHhhhhhhccchhhH-HHhhhccccccCCCCchhccccccee
Confidence 578899999999999999999999999999643322 123345566666665 54443321111111112233333333
Q ss_pred ChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCCccEEeecCCC-
Q 044605 105 SREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKGMG- 182 (405)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~- 182 (405)
....-+...+++..+...+++-.|+++.+....+|..++ .++..|-.|++++|. +..+|+ +.++.+|++|.+++++
T Consensus 108 lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lf-inLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 108 LDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLF-INLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred eecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHH-HhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChh
Confidence 222334455677777777888888888888888887654 357778888888887 666665 7778899999988764
Q ss_pred ---CCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEecc--CCccccCCCCCCcceEEEcCc
Q 044605 183 ---RMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSC--EQLLVSCTTLPLLCELEIDGF 254 (405)
Q Consensus 183 ---~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c--~~l~~~l~~l~~L~~L~l~~~ 254 (405)
.++-+|. +.+|+.|++++....-+.+|. .+.+|..++++.+ +.+|..+..+++|+.|++++|
T Consensus 186 ~hfQLrQLPs----------mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 186 NHFQLRQLPS----------MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred hHHHHhcCcc----------chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC
Confidence 2333333 677788888876554446665 5677888888653 355788888888888888888
Q ss_pred CCccccccccccCCCCCCCCCeeecCCC------------Ccc-EEecCCC--CcccccccCCCCCccEEEEeCCccccc
Q 044605 255 GEVAWINRPVEAGIFDSSNPGPEKSRTE------------VLP-WEIGSPD--QESLPEGLHKLSHITRISIVGSYLVSF 319 (405)
Q Consensus 255 ~~l~~~~~~~~~~~~~~l~~Ll~l~~~~------------~l~-l~i~~~~--l~~lp~~~~~l~~L~~L~l~~~~l~~l 319 (405)
+..+. ....+...+++. |.+|.+. +++ +....++ +..+|.+++.+..|+.+...+|.++-+
T Consensus 256 ~iteL---~~~~~~W~~lEt-LNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV 331 (1255)
T KOG0444|consen 256 KITEL---NMTEGEWENLET-LNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV 331 (1255)
T ss_pred ceeee---eccHHHHhhhhh-hccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC
Confidence 65431 111111111111 2222210 000 1111122 235677777777777777777777777
Q ss_pred ccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCcch
Q 044605 320 PKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCPDL 370 (405)
Q Consensus 320 ~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l 370 (405)
|++ +..|+.|+.|.++. +.+..+|++ .+++.|+.|++...|.+
T Consensus 332 PEg-------lcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 332 PEG-------LCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred chh-------hhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCc
Confidence 766 78889999999976 567778888 77889999999999876
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.63 E-value=9.5e-17 Score=151.94 Aligned_cols=171 Identities=15% Similarity=0.147 Sum_probs=87.7
Q ss_pred eeeEEEEEccCCCCccC-ccccCCCccCcccCceeeCCCCCCCcccccccc-cCCCceEEcccccCCChhhhhhcccccc
Q 044605 25 FVIYLILVGDLTESKEM-PLRIGKLTSLRTLTKFAVGKSNCSGLSELRSST-LLHEKLTILGLENVNVAEDAKEGNRTTS 102 (405)
Q Consensus 25 ~~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~-~L~~~L~l~~l~~~~~~~~~~~~~l~~l 102 (405)
...-+.||+++|.+..+ +.+|.++.||+.+++. .+....++..+... ++. .|.+.+ ..+..........+..+
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~---~N~Lt~IP~f~~~sghl~-~L~L~~-N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLN---KNELTRIPRFGHESGHLE-KLDLRH-NLISSVTSEELSALPAL 151 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeec---cchhhhccccccccccee-EEeeec-cccccccHHHHHhHhhh
Confidence 45667899999988865 5668899999888642 11112222222211 122 333322 11111111111111111
Q ss_pred cCChhhHHHHHHH-hccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeec
Q 044605 103 SDSREVAEIQTRV-LEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIK 179 (405)
Q Consensus 103 ~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~ 179 (405)
+......+....+ ...++.-.++++|++.+|..+.+-..-+ ..+.+|..|.+++|. ++.+|. +.+||+|+.|++.
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F-~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF-DSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc-cccchheeeecccCc-ccccCHHHhhhcchhhhhhcc
Confidence 1111111111111 2234444678888888877665543322 146678888888776 777774 6668888888886
Q ss_pred CCCCCeeeCC--CCCCCCCCCCCCcccEEeecc
Q 044605 180 GMGRMAKAGT--TGGDQQAAKGFPCLRELSIIN 210 (405)
Q Consensus 180 ~~~~l~~~~~--~~~~~~~~~~~~~L~~L~l~~ 210 (405)
.+ .++.+.. |. ++++|+.|.+..
T Consensus 230 rN-~irive~ltFq-------gL~Sl~nlklqr 254 (873)
T KOG4194|consen 230 RN-RIRIVEGLTFQ-------GLPSLQNLKLQR 254 (873)
T ss_pred cc-ceeeehhhhhc-------Cchhhhhhhhhh
Confidence 53 3444422 33 366666666554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.62 E-value=4.8e-17 Score=153.90 Aligned_cols=337 Identities=15% Similarity=0.115 Sum_probs=178.6
Q ss_pred eEEEEEccCCCCccCccc-cCCCccCcc--cCceeeCCCCCCCcccccccccCCCceEEcc--cccCCChhhhhhccccc
Q 044605 27 IYLILVGDLTESKEMPLR-IGKLTSLRT--LTKFAVGKSNCSGLSELRSSTLLHEKLTILG--LENVNVAEDAKEGNRTT 101 (405)
Q Consensus 27 ~L~~L~L~~~~i~~lP~~-i~~L~~L~~--L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~--l~~~~~~~~~~~~~l~~ 101 (405)
.-+.||.++..+..+... +...--.++ |++.. +...-..+..+.++.+|+ .+.+.. +..+..... ..+.+..
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~Ldlsn-Nkl~~id~~~f~nl~nLq-~v~l~~N~Lt~IP~f~~-~sghl~~ 129 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSN-NKLSHIDFEFFYNLPNLQ-EVNLNKNELTRIPRFGH-ESGHLEK 129 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccc-cccccCcHHHHhcCCcce-eeeeccchhhhcccccc-cccceeE
Confidence 456889999888765322 223333333 55321 111223444555666565 555543 222221111 0111111
Q ss_pred ccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeec
Q 044605 102 SSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIK 179 (405)
Q Consensus 102 l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~ 179 (405)
+.- ..+.....-.+++...+.|+.|+++.|....+|..-+ ..-.++++|++++|. ++.+. .+..+.+|-+|.+.
T Consensus 130 L~L--~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sf-p~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 130 LDL--RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSF-PAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred Eee--eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCC-CCCCCceEEeecccc-ccccccccccccchheeeecc
Confidence 100 0000111112233344556666776666555543222 123567777777666 55553 25566677777776
Q ss_pred CCCCCeeeCC--CCCCCCCCCCCCcccEEeeccCccccc--cCC-CCCCcccEEEEeccC--Cc-cccCCCCCCcceEEE
Q 044605 180 GMGRMAKAGT--TGGDQQAAKGFPCLRELSIINCSKLKG--RLP-QHFSSLERIVIMSCE--QL-LVSCTTLPLLCELEI 251 (405)
Q Consensus 180 ~~~~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~--~l~-~~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l 251 (405)
.+ .+..++. |.. +|+|+.|++... .++- .+. +++++|+.|.+..+. .+ ...|..+.++++|++
T Consensus 206 rN-rittLp~r~Fk~-------L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 206 RN-RITTLPQRSFKR-------LPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred cC-cccccCHHHhhh-------cchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence 54 3444443 222 677777777653 2221 111 267777777775532 34 345666888888888
Q ss_pred cCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcc
Q 044605 252 DGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLS 328 (405)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~ 328 (405)
+.|... .+..+++.+++.| |+++++..- ++ +.++...++|+.|++++|+++++++..|..|.
T Consensus 277 ~~N~l~-----~vn~g~lfgLt~L~~L~lS~NaI~----------rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 277 ETNRLQ-----AVNEGWLFGLTSLEQLDLSYNAIQ----------RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred ccchhh-----hhhcccccccchhhhhccchhhhh----------eeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 877544 5566778888888 888877433 32 44566667777777777777777776652222
Q ss_pred c------------------CCCCCCcCEEeeecCCCCcccCCC----CCcCCccEEeecCCcchHHHhhcCccccccccc
Q 044605 329 F------------------VRNLTSLERLELSRCPILKSFPEN----GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVA 386 (405)
Q Consensus 329 ~------------------l~~l~~L~~L~l~~c~~l~~l~~~----~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~ 386 (405)
. +..+++|++|++++|..--.+.++ ..+++|+.|++.|. +++.+- ...+.-+.
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~----krAfsgl~ 416 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIP----KRAFSGLE 416 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecc----hhhhccCc
Confidence 2 345667777777765433223222 23467777777775 232221 22334466
Q ss_pred ccCeeEecceEee
Q 044605 387 DIPFVQLNHKLVF 399 (405)
Q Consensus 387 ~i~~~~~~~~~~~ 399 (405)
.+.++.++++.|-
T Consensus 417 ~LE~LdL~~Naia 429 (873)
T KOG4194|consen 417 ALEHLDLGDNAIA 429 (873)
T ss_pred ccceecCCCCcce
Confidence 6667777776653
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.57 E-value=1.6e-17 Score=150.66 Aligned_cols=61 Identities=28% Similarity=0.330 Sum_probs=52.8
Q ss_pred cCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCCccEEeecCCC
Q 044605 118 MLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKGMG 182 (405)
Q Consensus 118 ~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~ 182 (405)
.++.+.++..|++.++...++|+.+. .+.+|++|+++++. ++.+|. +|.+ +|+.|.+.+++
T Consensus 247 ~~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HhcccccceeeeccccccccCchHHH--HhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 45578899999999999999999988 78999999999887 888874 9999 89999987754
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.51 E-value=9.9e-17 Score=152.94 Aligned_cols=335 Identities=16% Similarity=0.148 Sum_probs=203.6
Q ss_pred heeeEEEEEccCCCCc--cCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhccccc
Q 044605 24 IFVIYLILVGDLTESK--EMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTT 101 (405)
Q Consensus 24 ~~~~L~~L~L~~~~i~--~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~ 101 (405)
.++..+-.|+++|.++ .+|..+..++.++-|.+.... -...+.+|+.|.+|. .|++.+.+-+.- ......+..
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~--L~~vPeEL~~lqkLE-HLs~~HN~L~~v--hGELs~Lp~ 79 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK--LEQVPEELSRLQKLE-HLSMAHNQLISV--HGELSDLPR 79 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhh--hhhChHHHHHHhhhh-hhhhhhhhhHhh--hhhhccchh
Confidence 4667888899999876 699999999999988642222 245678888888887 777765321110 001111111
Q ss_pred ccC--ChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEe
Q 044605 102 SSD--SREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLV 177 (405)
Q Consensus 102 l~~--~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~ 177 (405)
++. ...+.-....++..+..+..|..|+++.+.....|..+- .-+++-+|++++|+ +..+|. +.++.-|-.|+
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE--~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLE--YAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhh--hhcCcEEEEcccCc-cccCCchHHHhhHhHhhhc
Confidence 111 111111222344445556667777777777666676555 55677777777665 666664 44566666666
Q ss_pred ecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccc---cCCCCCCcccEEEEeccC----CccccCCCCCCcceEE
Q 044605 178 IKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKG---RLPQHFSSLERIVIMSCE----QLLVSCTTLPLLCELE 250 (405)
Q Consensus 178 l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---~l~~~~~~L~~L~l~~c~----~l~~~l~~l~~L~~L~ 250 (405)
++++ .++.+|. ....+..|++|.+++.+-.-. .+| .+.+|+.|.+++-. ++|..+..+.+|+.++
T Consensus 157 LS~N-rLe~LPP------Q~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 157 LSNN-RLEMLPP------QIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred cccc-hhhhcCH------HHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 6653 4555544 122356777788877543211 222 45666666666642 5577777788888888
Q ss_pred EcCcCCccccccccccCCCCCCCCC--eeecCCCCcc-------------EEecCCCCcccccccCCCCCccEEEEeCCc
Q 044605 251 IDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLP-------------WEIGSPDQESLPEGLHKLSHITRISIVGSY 315 (405)
Q Consensus 251 l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~-------------l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~ 315 (405)
++.|..- .+| +.+-++.+| |.+|++...+ +.++-++++.+|+++..+++|+.|++.+|+
T Consensus 229 lS~N~Lp-----~vP-ecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 229 LSENNLP-----IVP-ECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred ccccCCC-----cch-HHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc
Confidence 8876432 223 355566666 7777765443 444677777788888888888888877766
Q ss_pred cc--ccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeE
Q 044605 316 LV--SFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQ 392 (405)
Q Consensus 316 l~--~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~ 392 (405)
++ .||+. ++.+..|+.+..++ ++++-+|++ .-+..|+.|.+....-++ -.+.++.+..+..+.
T Consensus 303 L~FeGiPSG-------IGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiT------LPeaIHlL~~l~vLD 368 (1255)
T KOG0444|consen 303 LTFEGIPSG-------IGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLIT------LPEAIHLLPDLKVLD 368 (1255)
T ss_pred ccccCCccc-------hhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceee------chhhhhhcCCcceee
Confidence 54 56665 67777788777776 467778876 445577777766543221 123344455555554
Q ss_pred ec
Q 044605 393 LN 394 (405)
Q Consensus 393 ~~ 394 (405)
+.
T Consensus 369 lr 370 (1255)
T KOG0444|consen 369 LR 370 (1255)
T ss_pred cc
Confidence 43
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=3.3e-16 Score=155.42 Aligned_cols=235 Identities=18% Similarity=0.261 Sum_probs=157.1
Q ss_pred CCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605 121 PHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG 199 (405)
Q Consensus 121 ~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 199 (405)
...+|++++++.+....+|+|+. .+.+|+.+++.++. +..+|. +....+|+.|.+..+ .++.++. ...+
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~--~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~------~le~ 308 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIG--ACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPP------FLEG 308 (1081)
T ss_pred ccccceeeecchhhhhcchHHHH--hcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCC------cccc
Confidence 34677777777777777888887 77888888887766 455553 555666666665543 3555554 1224
Q ss_pred CCcccEEeeccCccccccCCC-----------------------------CCCcccEEEEeccC---CccccCCCCCCcc
Q 044605 200 FPCLRELSIINCSKLKGRLPQ-----------------------------HFSSLERIVIMSCE---QLLVSCTTLPLLC 247 (405)
Q Consensus 200 ~~~L~~L~l~~~~~l~~~l~~-----------------------------~~~~L~~L~l~~c~---~l~~~l~~l~~L~ 247 (405)
+.+|++|++... ++. .+|. .++.|+.|++.++. +..+.+..+++|+
T Consensus 309 ~~sL~tLdL~~N-~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK 386 (1081)
T KOG0618|consen 309 LKSLRTLDLQSN-NLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK 386 (1081)
T ss_pred cceeeeeeehhc-ccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence 677777777552 333 1221 34445555555432 2234556688999
Q ss_pred eEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCC
Q 044605 248 ELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLE 325 (405)
Q Consensus 248 ~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~ 325 (405)
.|+++.|..- .||...+.+++.| |.+|++ +|+.+|..+.+++.|+.|...+|++..+|+
T Consensus 387 VLhLsyNrL~-----~fpas~~~kle~LeeL~LSGN----------kL~~Lp~tva~~~~L~tL~ahsN~l~~fPe---- 447 (1081)
T KOG0618|consen 387 VLHLSYNRLN-----SFPASKLRKLEELEELNLSGN----------KLTTLPDTVANLGRLHTLRAHSNQLLSFPE---- 447 (1081)
T ss_pred eeeecccccc-----cCCHHHHhchHHhHHHhcccc----------hhhhhhHHHHhhhhhHHHhhcCCceeechh----
Confidence 9999987433 6788888888888 888877 778999989999999999999999999884
Q ss_pred CcccCCCCCCcCEEeeecCCCCcccCC-CCCc-CCccEEeecCCcchHHHhhcCcccccccccccCeeEecce
Q 044605 326 SLSFVRNLTSLERLELSRCPILKSFPE-NGLL-PSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHK 396 (405)
Q Consensus 326 ~l~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~-~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~ 396 (405)
+..++.|+.+|++.| .++.+-. ...| ++|++|+++|.+.+-- +.++....+++....++.+
T Consensus 448 ----~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~~-----d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 448 ----LAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLVF-----DHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ----hhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCccccc-----chhhhHHhhhhhheecccC
Confidence 589999999999864 5554422 2455 7999999999975311 2333344444444444443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.47 E-value=1.8e-16 Score=143.91 Aligned_cols=329 Identities=16% Similarity=0.185 Sum_probs=184.9
Q ss_pred ccccCchhhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhh
Q 044605 15 ETINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDA 94 (405)
Q Consensus 15 ~~l~~~~~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~ 94 (405)
.++|+.+.. ...++.|++++|.+.++|.+|+.+..|..|+. ..+.....+..+..+..+. .+.+.. .......+.
T Consensus 104 s~lp~~i~s-~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~--~~N~i~slp~~~~~~~~l~-~l~~~~-n~l~~l~~~ 178 (565)
T KOG0472|consen 104 SELPEQIGS-LISLVKLDCSSNELKELPDSIGRLLDLEDLDA--TNNQISSLPEDMVNLSKLS-KLDLEG-NKLKALPEN 178 (565)
T ss_pred hhccHHHhh-hhhhhhhhccccceeecCchHHHHhhhhhhhc--cccccccCchHHHHHHHHH-Hhhccc-cchhhCCHH
Confidence 344444432 33666666666666666666776666666652 2222222333444443332 222221 111222222
Q ss_pred hhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCC
Q 044605 95 KEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPL 172 (405)
Q Consensus 95 ~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~ 172 (405)
... ++.+++..+.....+.++..++.+.+|..|++..+....+|. +. .+..|.+++++.+. +.-+|+ +.++++
T Consensus 179 ~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe-f~--gcs~L~Elh~g~N~-i~~lpae~~~~L~~ 253 (565)
T KOG0472|consen 179 HIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE-FP--GCSLLKELHVGENQ-IEMLPAEHLKHLNS 253 (565)
T ss_pred HHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC-CC--ccHHHHHHHhcccH-HHhhHHHHhccccc
Confidence 222 555666666667777777888888888888888888877784 33 47778888887665 666765 557888
Q ss_pred ccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCC--cccEEEEeccCC---------------
Q 044605 173 LKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFS--SLERIVIMSCEQ--------------- 235 (405)
Q Consensus 173 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~--~L~~L~l~~c~~--------------- 235 (405)
+.+|++.++ .++.+|. ....+.+|++|++++. .++ .+|..+. +|+.|.+.+.+-
T Consensus 254 l~vLDLRdN-klke~Pd------e~clLrsL~rLDlSNN-~is-~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~v 324 (565)
T KOG0472|consen 254 LLVLDLRDN-KLKEVPD------EICLLRSLERLDLSNN-DIS-SLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEV 324 (565)
T ss_pred ceeeecccc-ccccCch------HHHHhhhhhhhcccCC-ccc-cCCcccccceeeehhhcCCchHHHHHHHHcccHHHH
Confidence 888888875 4555654 1223678888888773 555 4554322 556666655320
Q ss_pred ------------c--------------cccCCC---CCCcceEEEcCcCCccccccccccCCCCCCC-CC---eeecCCC
Q 044605 236 ------------L--------------LVSCTT---LPLLCELEIDGFGEVAWINRPVEAGIFDSSN-PG---PEKSRTE 282 (405)
Q Consensus 236 ------------l--------------~~~l~~---l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~-~L---l~l~~~~ 282 (405)
+ +..++. +.+.+.|++++-+.. .+|.+.|..-+ .+ ..++.+.
T Consensus 325 LKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-----~VPdEVfea~~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 325 LKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-----LVPDEVFEAAKSEIVTSVNFSKNQ 399 (565)
T ss_pred HHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-----cCCHHHHHHhhhcceEEEecccch
Confidence 0 001111 334555555543221 22222221000 00 2222221
Q ss_pred Ccc-------------------------------------EEecCCCCcccccccCCCCCccEEEEeCCcccccccCCC-
Q 044605 283 VLP-------------------------------------WEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGL- 324 (405)
Q Consensus 283 ~l~-------------------------------------l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~- 324 (405)
-.+ +..+.+-+..+|..++.+..|+.|+++.|++..+|+--.
T Consensus 400 L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~ 479 (565)
T KOG0472|consen 400 LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYE 479 (565)
T ss_pred HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhh
Confidence 111 222444555677777777777777777777776664211
Q ss_pred --------------CCccc--CCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCc
Q 044605 325 --------------ESLSF--VRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCP 368 (405)
Q Consensus 325 --------------~~l~~--l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~ 368 (405)
...+. +.++.+|.+|++.+| .+..+|.+ +..++|++|+++|.|
T Consensus 480 lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 480 LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHHHHHHHhccccccccChHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 11111 677888899999874 56777766 788899999999886
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.31 E-value=1.9e-11 Score=124.65 Aligned_cols=176 Identities=23% Similarity=0.184 Sum_probs=113.7
Q ss_pred CCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCc
Q 044605 123 YGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPC 202 (405)
Q Consensus 123 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 202 (405)
.+|+.|++.+|....+|. .+++|+.|++++|. +..+|.+ ..+|+.|++.++ .+..++. ..++
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS~N~-L~~Lp~l--p~~L~~L~Ls~N-~L~~LP~---------lp~~ 343 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQ-LASLPAL--PSELCKLWAYNN-QLTSLPT---------LPSG 343 (788)
T ss_pred hhcCEEECcCCccccccc-----cccccceeECCCCc-cccCCCC--cccccccccccC-ccccccc---------cccc
Confidence 457777777777666664 24678888888775 5666542 245677777664 3444443 1247
Q ss_pred ccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCC-CCCcceEEEcCcCCccccccccccCCCCCCCCC--eeec
Q 044605 203 LRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTT-LPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKS 279 (405)
Q Consensus 203 L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~ 279 (405)
|+.|+++++ .++ .+|...++|+.|+++++. + ..++. .++|+.|++++|+.. .+|. .. ..| |+++
T Consensus 344 Lq~LdLS~N-~Ls-~LP~lp~~L~~L~Ls~N~-L-~~LP~l~~~L~~LdLs~N~Lt-----~LP~-l~---s~L~~LdLS 410 (788)
T PRK15387 344 LQELSVSDN-QLA-SLPTLPSELYKLWAYNNR-L-TSLPALPSGLKELIVSGNRLT-----SLPV-LP---SELKELMVS 410 (788)
T ss_pred cceEecCCC-ccC-CCCCCCcccceehhhccc-c-ccCcccccccceEEecCCccc-----CCCC-cc---cCCCEEEcc
Confidence 888888874 666 467666778888777643 2 12322 347888888887543 3332 11 234 5666
Q ss_pred CCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcc
Q 044605 280 RTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKS 349 (405)
Q Consensus 280 ~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~ 349 (405)
++ .++.+|.. ..+|+.|++++|+++.+|.. +.++++|+.|++++|+.-..
T Consensus 411 ~N----------~LssIP~l---~~~L~~L~Ls~NqLt~LP~s-------l~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 411 GN----------RLTSLPML---PSGLLSLSVYRNQLTRLPES-------LIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CC----------cCCCCCcc---hhhhhhhhhccCcccccChH-------HhhccCCCeEECCCCCCCch
Confidence 65 45666653 34678888888889888876 57888999999998875443
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.26 E-value=3.2e-11 Score=122.99 Aligned_cols=191 Identities=26% Similarity=0.188 Sum_probs=99.8
Q ss_pred CCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCc
Q 044605 123 YGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPC 202 (405)
Q Consensus 123 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 202 (405)
++|+.|++.+|....+|. .+++|+.|++++|. ++.+|. .+++|+.|+++++ .+..++. ..++
T Consensus 262 ~sL~~L~Ls~N~L~~Lp~-----lp~~L~~L~Ls~N~-Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~---------lp~~ 323 (788)
T PRK15387 262 PGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDN-QLASLPA---------LPSE 323 (788)
T ss_pred cccceeeccCCchhhhhh-----chhhcCEEECcCCc-cccccc--cccccceeECCCC-ccccCCC---------Cccc
Confidence 456666666665554543 23456666776665 555554 2456777777654 3443432 1345
Q ss_pred ccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCC-CCCcceEEEcCcCCccccccccccCCCCCCCCC--eeec
Q 044605 203 LRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTT-LPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKS 279 (405)
Q Consensus 203 L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~ 279 (405)
|+.|++.++ .++ .+|...++|+.|+++++. + ..++. .++|+.|++++|... .+|. .. ..| |+++
T Consensus 324 L~~L~Ls~N-~L~-~LP~lp~~Lq~LdLS~N~-L-s~LP~lp~~L~~L~Ls~N~L~-----~LP~-l~---~~L~~LdLs 390 (788)
T PRK15387 324 LCKLWAYNN-QLT-SLPTLPSGLQELSVSDNQ-L-ASLPTLPSELYKLWAYNNRLT-----SLPA-LP---SGLKELIVS 390 (788)
T ss_pred ccccccccC-ccc-cccccccccceEecCCCc-c-CCCCCCCcccceehhhccccc-----cCcc-cc---cccceEEec
Confidence 666666663 444 355444467777776543 1 11111 245666666655322 2222 11 123 4444
Q ss_pred CCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCC
Q 044605 280 RTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPS 358 (405)
Q Consensus 280 ~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~ 358 (405)
++ .++.+|.. .++|+.|++++|.++.+|.. ..+|+.|++++| .++.+|.. ..+++
T Consensus 391 ~N----------~Lt~LP~l---~s~L~~LdLS~N~LssIP~l----------~~~L~~L~Ls~N-qLt~LP~sl~~L~~ 446 (788)
T PRK15387 391 GN----------RLTSLPVL---PSELKELMVSGNRLTSLPML----------PSGLLSLSVYRN-QLTRLPESLIHLSS 446 (788)
T ss_pred CC----------cccCCCCc---ccCCCEEEccCCcCCCCCcc----------hhhhhhhhhccC-cccccChHHhhccC
Confidence 44 33445532 24566677777666666532 235566666664 45666654 33456
Q ss_pred ccEEeecCCc
Q 044605 359 VVYLSIYLCP 368 (405)
Q Consensus 359 L~~L~i~~c~ 368 (405)
|+.|++++++
T Consensus 447 L~~LdLs~N~ 456 (788)
T PRK15387 447 ETTVNLEGNP 456 (788)
T ss_pred CCeEECCCCC
Confidence 6677776664
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.19 E-value=2.3e-12 Score=128.62 Aligned_cols=164 Identities=15% Similarity=0.085 Sum_probs=90.4
Q ss_pred ccEEEEEeeC-CCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcc
Q 044605 125 LKELKVQNYG-GTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCL 203 (405)
Q Consensus 125 L~~L~l~~~~-~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 203 (405)
++.+++..+. +..++..+. .+++ .|++.++. +. .-.+..+++|+.+....+. +..+.. .-++|
T Consensus 158 ik~~~l~~n~l~~~~~~~i~--~l~~--~ldLr~N~-~~-~~dls~~~~l~~l~c~rn~-ls~l~~---------~g~~l 221 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIY--NLTH--QLDLRYNE-ME-VLDLSNLANLEVLHCERNQ-LSELEI---------SGPSL 221 (1081)
T ss_pred chhhhhhhhhcccchhcchh--hhhe--eeecccch-hh-hhhhhhccchhhhhhhhcc-cceEEe---------cCcch
Confidence 4555554432 334443332 3333 58888776 33 3345667777777655432 222211 25788
Q ss_pred cEEeeccCccccccCCC-CCCcccEEEEecc--CCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eee
Q 044605 204 RELSIINCSKLKGRLPQ-HFSSLERIVIMSC--EQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEK 278 (405)
Q Consensus 204 ~~L~l~~~~~l~~~l~~-~~~~L~~L~l~~c--~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l 278 (405)
+.|+..+|+-.+ ..+. ...+|+.++++.. ..+|.++..+++|+.++...|... .++. .+...++| +.+
T Consensus 222 ~~L~a~~n~l~~-~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-----~lp~-ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 222 TALYADHNPLTT-LDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-----ALPL-RISRITSLVSLSA 294 (1081)
T ss_pred heeeeccCccee-eccccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-----hhHH-HHhhhhhHHHHHh
Confidence 888888876544 3443 3456888888764 366888888888888888887553 2222 12222223 333
Q ss_pred cCCCCccEEecCCCCcccccccCCCCCccEEEEeCCccccccc
Q 044605 279 SRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPK 321 (405)
Q Consensus 279 ~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~ 321 (405)
..| +++.+|.....+++|++|++..|++.++|+
T Consensus 295 ~~n----------el~yip~~le~~~sL~tLdL~~N~L~~lp~ 327 (1081)
T KOG0618|consen 295 AYN----------ELEYIPPFLEGLKSLRTLDLQSNNLPSLPD 327 (1081)
T ss_pred hhh----------hhhhCCCcccccceeeeeeehhccccccch
Confidence 333 334455545555555555555555555554
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.06 E-value=2.5e-10 Score=117.00 Aligned_cols=178 Identities=18% Similarity=0.181 Sum_probs=93.1
Q ss_pred CccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCc
Q 044605 124 GLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPC 202 (405)
Q Consensus 124 ~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 202 (405)
+|+.|++.+|....+|.++. ++|+.|++++|. +..+|. + .++|+.|+++++ .+..++. ...++
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~----s~L~~L~Ls~N~-L~~LP~~l--~~sL~~L~Ls~N-~Lt~LP~--------~lp~s 305 (754)
T PRK15370 242 TIQEMELSINRITELPERLP----SALQSLDLFHNK-ISCLPENL--PEELRYLSVYDN-SIRTLPA--------HLPSG 305 (754)
T ss_pred cccEEECcCCccCcCChhHh----CCCCEEECcCCc-cCcccccc--CCCCcEEECCCC-ccccCcc--------cchhh
Confidence 46666666666656665443 356777776554 455553 2 246677776664 3433332 11235
Q ss_pred ccEEeeccCccccccCCC-CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--ee
Q 044605 203 LRELSIINCSKLKGRLPQ-HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PE 277 (405)
Q Consensus 203 L~~L~l~~~~~l~~~l~~-~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~ 277 (405)
|+.|+++++ .++ .+|. ..++|+.|++.+|. .+|..+ .++|+.|++++|+.. .+|.... ..| |+
T Consensus 306 L~~L~Ls~N-~Lt-~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~-----~LP~~lp---~~L~~Ld 373 (754)
T PRK15370 306 ITHLNVQSN-SLT-ALPETLPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQIT-----VLPETLP---PTITTLD 373 (754)
T ss_pred HHHHHhcCC-ccc-cCCccccccceeccccCCccccCChhh--cCcccEEECCCCCCC-----cCChhhc---CCcCEEE
Confidence 666666663 444 2443 34566666666653 223322 256777777766432 3333221 133 45
Q ss_pred ecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCccc-CCCCCCcCEEeeecCC
Q 044605 278 KSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSF-VRNLTSLERLELSRCP 345 (405)
Q Consensus 278 l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~ 345 (405)
+++| .++.+|..+. .+|+.|++++|++..+|.. +|. ...++.+..|++.+|+
T Consensus 374 Ls~N----------~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~s----l~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 374 VSRN----------ALTNLPENLP--AALQIMQASRNNLVRLPES----LPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCC----------cCCCCCHhHH--HHHHHHhhccCCcccCchh----HHHHhhcCCCccEEEeeCCC
Confidence 5544 3345555432 2566677777777666643 111 2334666677777665
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.00 E-value=6.5e-12 Score=101.96 Aligned_cols=82 Identities=27% Similarity=0.391 Sum_probs=57.2
Q ss_pred CCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCCccEEeecCCCCCeeeCC-CCCCCCC
Q 044605 119 LKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKGMGRMAKAGT-TGGDQQA 196 (405)
Q Consensus 119 l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~ 196 (405)
+..++++..|.++.+....+|..+. .+.+|+.|+++++. ++.+|. +..+|+|+.|+++ ++.+...+. ||+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia--~l~nlevln~~nnq-ie~lp~~issl~klr~lnvg-mnrl~~lprgfgs---- 100 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIA--ELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVG-MNRLNILPRGFGS---- 100 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHH--Hhhhhhhhhcccch-hhhcChhhhhchhhhheecc-hhhhhcCccccCC----
Confidence 4445666667777777777777666 78888888888776 777764 7788888888775 334555555 665
Q ss_pred CCCCCcccEEeeccC
Q 044605 197 AKGFPCLRELSIINC 211 (405)
Q Consensus 197 ~~~~~~L~~L~l~~~ 211 (405)
||.|+.|++...
T Consensus 101 ---~p~levldltyn 112 (264)
T KOG0617|consen 101 ---FPALEVLDLTYN 112 (264)
T ss_pred ---Cchhhhhhcccc
Confidence 777887777653
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.93 E-value=3.3e-11 Score=97.93 Aligned_cols=158 Identities=23% Similarity=0.284 Sum_probs=112.2
Q ss_pred CCCCccEEEEEcCCCCCcC-CCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCc
Q 044605 146 SFENLVVLRFRNCNQCTSL-PSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSS 224 (405)
Q Consensus 146 ~l~~L~~L~l~~~~~~~~l-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~ 224 (405)
.+++++.|-++++. ++.+ |.+..+.+|+.|+++++ .++.++. ....+|+|+.|++.- ..+
T Consensus 31 ~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nn-qie~lp~------~issl~klr~lnvgm-nrl---------- 91 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNN-QIEELPT------SISSLPKLRILNVGM-NRL---------- 91 (264)
T ss_pred chhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccc-hhhhcCh------hhhhchhhhheecch-hhh----------
Confidence 56778888888887 4444 45777888888877764 4555544 111244444444421 111
Q ss_pred ccEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCC
Q 044605 225 LERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHK 302 (405)
Q Consensus 225 L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~ 302 (405)
..+|.+|+++|.|+.|+++.++... ..-++.|..++.| +.+++. .+..+|..+++
T Consensus 92 ---------~~lprgfgs~p~levldltynnl~e----~~lpgnff~m~tlralyl~dn----------dfe~lp~dvg~ 148 (264)
T KOG0617|consen 92 ---------NILPRGFGSFPALEVLDLTYNNLNE----NSLPGNFFYMTTLRALYLGDN----------DFEILPPDVGK 148 (264)
T ss_pred ---------hcCccccCCCchhhhhhcccccccc----ccCCcchhHHHHHHHHHhcCC----------CcccCChhhhh
Confidence 2357888888999999998876554 4444566666666 777666 44678999999
Q ss_pred CCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC
Q 044605 303 LSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN 353 (405)
Q Consensus 303 l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~ 353 (405)
+++|+.|.+.+|.+-++|.+ ++.+..|++|.+.++ .++.+|..
T Consensus 149 lt~lqil~lrdndll~lpke-------ig~lt~lrelhiqgn-rl~vlppe 191 (264)
T KOG0617|consen 149 LTNLQILSLRDNDLLSLPKE-------IGDLTRLRELHIQGN-RLTVLPPE 191 (264)
T ss_pred hcceeEEeeccCchhhCcHH-------HHHHHHHHHHhcccc-eeeecChh
Confidence 99999999999999999988 789999999999985 67777743
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=4.6e-10 Score=116.91 Aligned_cols=68 Identities=24% Similarity=0.214 Sum_probs=50.7
Q ss_pred cccccCchhhheeeEEEEEccCC-CCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcc
Q 044605 14 METINGDFTEIFVIYLILVGDLT-ESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILG 84 (405)
Q Consensus 14 l~~l~~~~~~~~~~L~~L~L~~~-~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~ 84 (405)
+..++.+++..++.|++|||++| .+.++|.+|++|.+||+|++..+.- ..-+..+++|..|. +|++..
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk~L~-~Lnl~~ 627 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLKKLI-YLNLEV 627 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--cccchHHHHHHhhh-eecccc
Confidence 44566677878999999999988 6899999999999999998654442 23455566666666 666544
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.90 E-value=1.2e-08 Score=104.96 Aligned_cols=114 Identities=19% Similarity=0.203 Sum_probs=65.7
Q ss_pred CCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCc
Q 044605 123 YGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPC 202 (405)
Q Consensus 123 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 202 (405)
.+...|++.+.....+|..+. ++|+.|++++|. ++.+|.- ..++|++|++.++. +..++. ..+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip----~~L~~L~Ls~N~-LtsLP~~-l~~nL~~L~Ls~N~-LtsLP~--------~l~~~ 242 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP----EQITTLILDNNE-LKSLPEN-LQGNIKTLYANSNQ-LTSIPA--------TLPDT 242 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc----cCCcEEEecCCC-CCcCChh-hccCCCEEECCCCc-cccCCh--------hhhcc
Confidence 355677777766666776443 467788887775 6666641 13577888777653 444432 12346
Q ss_pred ccEEeeccCccccccCCCC-CCcccEEEEeccC--CccccCCCCCCcceEEEcCcC
Q 044605 203 LRELSIINCSKLKGRLPQH-FSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFG 255 (405)
Q Consensus 203 L~~L~l~~~~~l~~~l~~~-~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~ 255 (405)
|+.|++++| .+. .+|.. ..+|+.|+++++. .+|..++ ++|+.|++++|.
T Consensus 243 L~~L~Ls~N-~L~-~LP~~l~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 243 IQEMELSIN-RIT-ELPERLPSALQSLDLFHNKISCLPENLP--EELRYLSVYDNS 294 (754)
T ss_pred ccEEECcCC-ccC-cCChhHhCCCCEEECcCCccCccccccC--CCCcEEECCCCc
Confidence 777777765 344 34432 2357777776432 2233222 467777777764
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.74 E-value=3.3e-09 Score=97.06 Aligned_cols=257 Identities=16% Similarity=0.175 Sum_probs=146.6
Q ss_pred CccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCC--CCCCCCCCCC
Q 044605 124 GLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGT--TGGDQQAAKG 199 (405)
Q Consensus 124 ~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~ 199 (405)
.-..+++..|....+|...+ +.+++|++|++++|. ++.+.+ +..++.|..|.+.+.+.+.+++. |++
T Consensus 68 ~tveirLdqN~I~~iP~~aF-~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g------- 138 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAF-KTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG------- 138 (498)
T ss_pred cceEEEeccCCcccCChhhc-cchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh-------
Confidence 44556666677667766544 256777777777766 555432 66677777777777667777765 444
Q ss_pred CCcccEEeeccCccccccCCC----CCCcccEEEEeccC--Ccc-ccCCCCCCcceEEEcCcCCccc-----c-------
Q 044605 200 FPCLRELSIINCSKLKGRLPQ----HFSSLERIVIMSCE--QLL-VSCTTLPLLCELEIDGFGEVAW-----I------- 260 (405)
Q Consensus 200 ~~~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c~--~l~-~~l~~l~~L~~L~l~~~~~l~~-----~------- 260 (405)
+.+|+.|.+.-+ ++. .+++ .+++|..|.+.+.. .+. ..|..+.+++.+.+..++.... .
T Consensus 139 L~slqrLllNan-~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 139 LSSLQRLLLNAN-HIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred HHHHHHHhcChh-hhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 666666655432 222 1221 46666666666532 222 3566677788887777763210 0
Q ss_pred c-------c------------ccccCCCC-CCCCC-eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcccc
Q 044605 261 N-------R------------PVEAGIFD-SSNPG-PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYLVS 318 (405)
Q Consensus 261 ~-------~------------~~~~~~~~-~l~~L-l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~ 318 (405)
. | .+....|. .++.+ -. +.-.|.-...-|. +|+.+++|+.|++++|.++.
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~--------~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSR--------LSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHh--------hccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 0 0 00000000 00000 00 0002333334454 67789999999999999998
Q ss_pred cccCCCCCccc------------------CCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCcc--------h
Q 044605 319 FPKGGLESLSF------------------VRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCPD--------L 370 (405)
Q Consensus 319 l~~~~~~~l~~------------------l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~--------l 370 (405)
|.+++|+.+.. +.++..|++|++.+| +++.+..+ ....+|.+|.+-+.|- +
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl 367 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWL 367 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceeeeeehccCcccCccchHHH
Confidence 88888854444 678889999999996 56666443 4456889999887552 3
Q ss_pred HHHhhcCcccc---cccccccCeeEecceEeeC
Q 044605 371 EEKCKKDEREY---CHLVADIPFVQLNHKLVFD 400 (405)
Q Consensus 371 ~~~~~~~~~~~---~~~i~~i~~~~~~~~~~~~ 400 (405)
.+|.++.+..+ ..+-..+..+.+.+..|.+
T Consensus 368 ~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~ 400 (498)
T KOG4237|consen 368 GEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGD 400 (498)
T ss_pred HHHHhhCCCCCCCCCCCCchhccccchhccccc
Confidence 45555444333 3333344444444444443
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.70 E-value=1.2e-09 Score=99.76 Aligned_cols=193 Identities=18% Similarity=0.194 Sum_probs=103.4
Q ss_pred CCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC---
Q 044605 146 SFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ--- 220 (405)
Q Consensus 146 ~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~--- 220 (405)
.+++|+.|++++|. ++.+. ++..+..+++|.+.++ .++.+.. ....++.+|+.|++++. .++-.-|.
T Consensus 272 ~L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~-----~~f~~ls~L~tL~L~~N-~it~~~~~aF~ 343 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTRN-KLEFVSS-----GMFQGLSGLKTLSLYDN-QITTVAPGAFQ 343 (498)
T ss_pred hcccceEeccCCCc-cchhhhhhhcchhhhhhhhcCcc-hHHHHHH-----HhhhccccceeeeecCC-eeEEEeccccc
Confidence 57888999998887 66664 3777888888888775 3555533 11223778888988884 44434443
Q ss_pred CCCcccEEEEeccC--------Ccccc--------CCC---CCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCC
Q 044605 221 HFSSLERIVIMSCE--------QLLVS--------CTT---LPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRT 281 (405)
Q Consensus 221 ~~~~L~~L~l~~c~--------~l~~~--------l~~---l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~ 281 (405)
...+|.++.+..++ .+-+| .+. -..++.+.+++...-+ +..+ .+.-.....-+.|
T Consensus 344 ~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~-----~~c~-~~ee~~~~~s~~c 417 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGD-----FRCG-GPEELGCLTSSPC 417 (498)
T ss_pred ccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccc-----cccC-CccccCCCCCCCC
Confidence 34566777765422 11111 112 2367778887764432 1111 1110000112222
Q ss_pred C----CccEEe--cCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--
Q 044605 282 E----VLPWEI--GSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-- 353 (405)
Q Consensus 282 ~----~l~l~i--~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-- 353 (405)
+ .++=++ +-..++.+|.++- ..-.+|++.+|.++.+|.+ .+.+| .+++++++ +..+...
T Consensus 418 P~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~~vp~~---------~~~~l-~~dls~n~-i~~Lsn~tf 484 (498)
T KOG4237|consen 418 PPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAITSVPDE---------LLRSL-LLDLSNNR-ISSLSNYTF 484 (498)
T ss_pred CCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhcccCHH---------HHhhh-hcccccCc-eehhhcccc
Confidence 1 111111 2234455655331 2346678888888888865 34666 67777754 4444333
Q ss_pred CCcCCccEEeec
Q 044605 354 GLLPSVVYLSIY 365 (405)
Q Consensus 354 ~~~~~L~~L~i~ 365 (405)
...+.|.+|.++
T Consensus 485 ~n~tql~tlils 496 (498)
T KOG4237|consen 485 SNMTQLSTLILS 496 (498)
T ss_pred cchhhhheeEEe
Confidence 233455555554
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.54 E-value=8.5e-10 Score=103.54 Aligned_cols=260 Identities=17% Similarity=0.061 Sum_probs=120.7
Q ss_pred CCccEEEEEeeCCC-----CCCcccCCCCCCCccEEEEEcCCCCC------cC-CCCCCCCCccEEeecCCCCCeeeCC-
Q 044605 123 YGLKELKVQNYGGT-----KFPAWLGQSSFENLVVLRFRNCNQCT------SL-PSVGHLPLLKNLVIKGMGRMAKAGT- 189 (405)
Q Consensus 123 ~~L~~L~l~~~~~~-----~lp~~~~~~~l~~L~~L~l~~~~~~~------~l-~~l~~l~~L~~L~l~~~~~l~~~~~- 189 (405)
.+|+.+.+.++... .++..+. ..++++.++++++.... .+ ..+..+++|+.|+++++......+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~--~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALR--PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHh--hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 33666666665431 1222222 44556666665554210 00 0244466666666666543222111
Q ss_pred CCCCCCCCCCCCcccEEeeccCccccc---cCC---CCC-CcccEEEEeccCC-------ccccCCCCCCcceEEEcCcC
Q 044605 190 TGGDQQAAKGFPCLRELSIINCSKLKG---RLP---QHF-SSLERIVIMSCEQ-------LLVSCTTLPLLCELEIDGFG 255 (405)
Q Consensus 190 ~~~~~~~~~~~~~L~~L~l~~~~~l~~---~l~---~~~-~~L~~L~l~~c~~-------l~~~l~~l~~L~~L~l~~~~ 255 (405)
+.. .... ++|++|++++|.--.. .+. ..+ ++|+.|++++|.- +...+..+++|+.|++++|.
T Consensus 101 ~~~---l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 101 LES---LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHH---Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 111 0001 3466777666532110 111 123 6667777766541 12334445667777777664
Q ss_pred CccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCC-CCcccCCC
Q 044605 256 EVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGL-ESLSFVRN 332 (405)
Q Consensus 256 ~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~-~~l~~l~~ 332 (405)
........+ ...+.....| +++++|.... .....++..+..+++|+.|+++++.+++.....+ ..++ ..
T Consensus 177 l~~~~~~~l-~~~l~~~~~L~~L~L~~n~i~~-----~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~--~~ 248 (319)
T cd00116 177 IGDAGIRAL-AEGLKANCNLEVLDLNNNGLTD-----EGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL--SP 248 (319)
T ss_pred CchHHHHHH-HHHHHhCCCCCEEeccCCccCh-----HHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHh--cc
Confidence 331000000 0112223344 5555552110 0011233455677889999998877664211100 0000 12
Q ss_pred CCCcCEEeeecCCCC----cccCCC-CCcCCccEEeecCCcchHHHhhcCcccccccc-cccCeeEecceE
Q 044605 333 LTSLERLELSRCPIL----KSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLV-ADIPFVQLNHKL 397 (405)
Q Consensus 333 l~~L~~L~l~~c~~l----~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i-~~i~~~~~~~~~ 397 (405)
.+.|+.|++++|... ..+... ...++|++++++++.--.+.+ ..-..+|... .++..++++++-
T Consensus 249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA-QLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH-HHHHHHHhhcCCchhhcccCCCC
Confidence 478899999887532 111111 222588899998874322211 1123344444 677777777653
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.54 E-value=2.3e-08 Score=104.34 Aligned_cols=204 Identities=21% Similarity=0.195 Sum_probs=115.7
Q ss_pred hccCcccccCchhhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCC
Q 044605 10 RLRRMETINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVN 89 (405)
Q Consensus 10 ~lr~l~~l~~~~~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~ 89 (405)
.++.+..+|..+.+. .+|||||++++.++.+|.++++|+.|.+|++...+..... ......+.+|+ +|.+..-..
T Consensus 580 ~~~~l~~LP~~I~~L-i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr-~L~l~~s~~-- 654 (889)
T KOG4658|consen 580 GNSSLSKLPSSIGEL-VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLR-VLRLPRSAL-- 654 (889)
T ss_pred CCCccCcCChHHhhh-hhhhcccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhccccc-EEEeecccc--
Confidence 455667788777754 4999999999999999999999999999997655543222 33334466677 776654220
Q ss_pred ChhhhhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCC-CCccEEEEEcCCCCCcCCCCC
Q 044605 90 VAEDAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSF-ENLVVLRFRNCNQCTSLPSVG 168 (405)
Q Consensus 90 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l-~~L~~L~l~~~~~~~~l~~l~ 168 (405)
. .....+..+..+.+|+.+.+.......+-+......+ +..+.+.+..+...+...+++
T Consensus 655 ~--------------------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~ 714 (889)
T KOG4658|consen 655 S--------------------NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLG 714 (889)
T ss_pred c--------------------cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccc
Confidence 0 0111223334455555555533222000000110011 112233333344445555677
Q ss_pred CCCCccEEeecCCCCCeeeCC-CCCCCCCCC-CCCcccEEeeccCccccccCCC-CCCcccEEEEeccCCccccC
Q 044605 169 HLPLLKNLVIKGMGRMAKAGT-TGGDQQAAK-GFPCLRELSIINCSKLKGRLPQ-HFSSLERIVIMSCEQLLVSC 240 (405)
Q Consensus 169 ~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~-~~~~L~~L~l~~~~~l~~~l~~-~~~~L~~L~l~~c~~l~~~l 240 (405)
.+.+|+.|.|.+|...+.... ... .... .|+++..+.+.+|...++..+. ..|+|+.|.+..|+.+...+
T Consensus 715 ~l~~L~~L~i~~~~~~e~~~~~~~~--~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 715 SLGNLEELSILDCGISEIVIEWEES--LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccCcceEEEEcCCCchhhcccccc--cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 788888888888765543322 110 0111 2666777777777666643332 66888888888887663333
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3.7e-08 Score=91.41 Aligned_cols=200 Identities=17% Similarity=0.167 Sum_probs=120.7
Q ss_pred CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC---C-CCCCCCccEEeecCCCCCeeeCCCCCCCCCC
Q 044605 122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP---S-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAA 197 (405)
Q Consensus 122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~---~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 197 (405)
+.+|+...+.++.....+..--...|++++.|+++++- +.... . ..+||+|+.|.++.+...-.+. ....
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-----s~~~ 193 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-----SNTT 193 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCcc-----ccch
Confidence 56677777777665544431111368999999998875 22111 1 4579999999998753222221 1223
Q ss_pred CCCCcccEEeeccCcc-ccc--cCCCCCCcccEEEEeccCCc-ccc--CCCCCCcceEEEcCcCCccccccccc-cCCCC
Q 044605 198 KGFPCLRELSIINCSK-LKG--RLPQHFSSLERIVIMSCEQL-LVS--CTTLPLLCELEIDGFGEVAWINRPVE-AGIFD 270 (405)
Q Consensus 198 ~~~~~L~~L~l~~~~~-l~~--~l~~~~~~L~~L~l~~c~~l-~~~--l~~l~~L~~L~l~~~~~l~~~~~~~~-~~~~~ 270 (405)
..++.|+.|.+..|.- .++ ++...||+|+.|++..+..+ ... ..-+..|+.|++++|+.+. ++ .....
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-----~~~~~~~~ 268 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-----FDQGYKVG 268 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-----cccccccc
Confidence 3589999999999842 111 23347999999999887433 222 2237789999999998763 22 11223
Q ss_pred CCCCC--eeecCCCCccEEecCCCCcccccc-----cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeec
Q 044605 271 SSNPG--PEKSRTEVLPWEIGSPDQESLPEG-----LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSR 343 (405)
Q Consensus 271 ~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~-----~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~ 343 (405)
.++.| +.++.|..-. + ..|+. ...+++|+.|++..|.+.++++-. .+..+++|+.|.+..
T Consensus 269 ~l~~L~~Lnls~tgi~s-------i-~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~-----~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIAS-------I-AEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN-----HLRTLENLKHLRITL 335 (505)
T ss_pred cccchhhhhccccCcch-------h-cCCCccchhhhcccccceeeecccCccccccccc-----hhhccchhhhhhccc
Confidence 44444 5555552221 0 12332 358899999999988887765421 134556677777655
Q ss_pred CC
Q 044605 344 CP 345 (405)
Q Consensus 344 c~ 345 (405)
+.
T Consensus 336 n~ 337 (505)
T KOG3207|consen 336 NY 337 (505)
T ss_pred cc
Confidence 43
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=5e-08 Score=90.58 Aligned_cols=199 Identities=19% Similarity=0.211 Sum_probs=125.6
Q ss_pred CCCCCccEEEEEcCCCCCcCC---CCCCCCCccEEeecCCC--CCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC
Q 044605 145 SSFENLVVLRFRNCNQCTSLP---SVGHLPLLKNLVIKGMG--RMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP 219 (405)
Q Consensus 145 ~~l~~L~~L~l~~~~~~~~l~---~l~~l~~L~~L~l~~~~--~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~ 219 (405)
++++.|++..+.++. +..++ ....+|+++.|+++++- +...+.. .+..+|+|+.|+++.. .+.....
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~------i~eqLp~Le~LNls~N-rl~~~~~ 189 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLK------IAEQLPSLENLNLSSN-RLSNFIS 189 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHH------HHHhcccchhcccccc-cccCCcc
Confidence 468889999998876 55555 25569999999998641 1111211 2346999999999874 4432111
Q ss_pred ----CCCCcccEEEEeccCCc----cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEec
Q 044605 220 ----QHFSSLERIVIMSCEQL----LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIG 289 (405)
Q Consensus 220 ----~~~~~L~~L~l~~c~~l----~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~ 289 (405)
..+++|+.|.+++|.-- ...+..+|+|+.|.+..|.... .......-+..| |+++++..+
T Consensus 190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-----~~~~~~~i~~~L~~LdLs~N~li----- 259 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-----IKATSTKILQTLQELDLSNNNLI----- 259 (505)
T ss_pred ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-----eecchhhhhhHHhhccccCCccc-----
Confidence 26899999999999732 3344568999999999985331 122222333344 677776333
Q ss_pred CCCCcccc--cccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC--CcccCCCCCcCCccEEeec
Q 044605 290 SPDQESLP--EGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI--LKSFPENGLLPSVVYLSIY 365 (405)
Q Consensus 290 ~~~l~~lp--~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~--l~~l~~~~~~~~L~~L~i~ 365 (405)
..+ ...+.|+.|+.|.++.+.+.+|-.-.-+++-....+++|+.|++..|+- ...+.......+|+.|.+.
T Consensus 260 -----~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 260 -----DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred -----ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 333 3467899999999998888775322112233346789999999999754 2222222334466655544
Q ss_pred C
Q 044605 366 L 366 (405)
Q Consensus 366 ~ 366 (405)
.
T Consensus 335 ~ 335 (505)
T KOG3207|consen 335 L 335 (505)
T ss_pred c
Confidence 3
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.34 E-value=2.4e-07 Score=86.87 Aligned_cols=242 Identities=17% Similarity=0.082 Sum_probs=140.6
Q ss_pred CCCCccEEEEEcCCCCC-----cCC-CCCCCCCccEEeecCCCCCeeeCC-CCCCCCCCCCCCcccEEeeccCccccc--
Q 044605 146 SFENLVVLRFRNCNQCT-----SLP-SVGHLPLLKNLVIKGMGRMAKAGT-TGGDQQAAKGFPCLRELSIINCSKLKG-- 216 (405)
Q Consensus 146 ~l~~L~~L~l~~~~~~~-----~l~-~l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~-- 216 (405)
.+.+|+.+++++|. ++ .++ .+...++++++++.++..- ..+. ...-......+++|++|++++|..-..
T Consensus 21 ~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 21 KLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETG-RIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccC-CcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 46779999999987 32 233 2556788999999875422 1010 000000112377999999998754221
Q ss_pred -c---CCCCCCcccEEEEeccCCc-------cccCCCC-CCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCC
Q 044605 217 -R---LPQHFSSLERIVIMSCEQL-------LVSCTTL-PLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTE 282 (405)
Q Consensus 217 -~---l~~~~~~L~~L~l~~c~~l-------~~~l~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~ 282 (405)
. ++.. ++|++|++++|..- ...+..+ ++|+.|++++|..... ....-...+..++.| +++++|.
T Consensus 99 ~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 99 GVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA-SCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch-HHHHHHHHHHhCCCcCEEECcCCC
Confidence 1 1123 56999999987532 2345566 8999999999975420 000011234455566 7777762
Q ss_pred CccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCccc-CCCCCCcCEEeeecCCCCccc-----CCC--C
Q 044605 283 VLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSF-VRNLTSLERLELSRCPILKSF-----PEN--G 354 (405)
Q Consensus 283 ~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~~l~~l-----~~~--~ 354 (405)
-.. ..+..++..+..+++|+.|+++++.++..... .+.. +..+++|++|++++|+. ++. ... .
T Consensus 177 l~~-----~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~---~l~~~~~~~~~L~~L~ls~n~l-~~~~~~~l~~~~~~ 247 (319)
T cd00116 177 IGD-----AGIRALAEGLKANCNLEVLDLNNNGLTDEGAS---ALAETLASLKSLEVLNLGDNNL-TDAGAAALASALLS 247 (319)
T ss_pred Cch-----HHHHHHHHHHHhCCCCCEEeccCCccChHHHH---HHHHHhcccCCCCEEecCCCcC-chHHHHHHHHHHhc
Confidence 210 00112344455678999999999776532211 0110 45788999999999863 321 111 1
Q ss_pred CcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEeeCC
Q 044605 355 LLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVFDP 401 (405)
Q Consensus 355 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~ 401 (405)
..+.|+.|++.+|. +.+.....-.+......+++.+.+.++.+.+.
T Consensus 248 ~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 248 PNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred cCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 13699999999994 32111111122334457888888888877643
No 27
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=9.1e-06 Score=76.96 Aligned_cols=161 Identities=19% Similarity=0.260 Sum_probs=96.1
Q ss_pred CCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCC-cccEEeeccCccccccCCCC-CCcccEEEEeccCCccccCCCCCC
Q 044605 168 GHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFP-CLRELSIINCSKLKGRLPQH-FSSLERIVIMSCEQLLVSCTTLPL 245 (405)
Q Consensus 168 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~l~~~-~~~L~~L~l~~c~~l~~~l~~l~~ 245 (405)
..+++++.|++.+| .+..+|. +| +|++|.+.+|..++ .+|.. .++|+.|.+.+|..++ .+ .++
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~----------LP~sLtsL~Lsnc~nLt-sLP~~LP~nLe~L~Ls~Cs~L~-sL--P~s 113 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV----------LPNELTEITIENCNNLT-TLPGSIPEGLEKLTVCHCPEIS-GL--PES 113 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC----------CCCCCcEEEccCCCCcc-cCCchhhhhhhheEccCccccc-cc--ccc
Confidence 34688999999988 6777654 44 79999999998887 57753 4579999999987663 22 246
Q ss_pred cceEEEcCcCC--ccccccccccCCCCCCCCCeeecCCCCccEEecCCCCcccccccCCC-CCccEEEEeCCcccccccC
Q 044605 246 LCELEIDGFGE--VAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHKL-SHITRISIVGSYLVSFPKG 322 (405)
Q Consensus 246 L~~L~l~~~~~--l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~~~~l-~~L~~L~l~~~~l~~l~~~ 322 (405)
|+.|.+..+.. +. .+|. ++.. |.+.++... ....+|. .+ ++|+.|+++++....+|..
T Consensus 114 Le~L~L~~n~~~~L~----~LPs----sLk~-L~I~~~n~~-------~~~~lp~---~LPsSLk~L~Is~c~~i~LP~~ 174 (426)
T PRK15386 114 VRSLEIKGSATDSIK----NVPN----GLTS-LSINSYNPE-------NQARIDN---LISPSLKTLSLTGCSNIILPEK 174 (426)
T ss_pred cceEEeCCCCCcccc----cCcc----hHhh-eeccccccc-------ccccccc---ccCCcccEEEecCCCcccCccc
Confidence 78888765321 22 2222 2222 233221000 0011111 23 5788888888555444532
Q ss_pred CCCCcccCCCCCCcCEEeeecCCCC-cccCCCCCcCCccEEeecCCcchHH
Q 044605 323 GLESLSFVRNLTSLERLELSRCPIL-KSFPENGLLPSVVYLSIYLCPDLEE 372 (405)
Q Consensus 323 ~~~~l~~l~~l~~L~~L~l~~c~~l-~~l~~~~~~~~L~~L~i~~c~~l~~ 372 (405)
+| .+|+.|.++.+... -.++....|+++ .|.+.+|.++..
T Consensus 175 ----LP-----~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 175 ----LP-----ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred ----cc-----ccCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence 22 57888888764311 123444566677 888888866543
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.14 E-value=2.5e-08 Score=92.04 Aligned_cols=110 Identities=21% Similarity=0.294 Sum_probs=67.0
Q ss_pred CCccEEEEEeeCCCCCCc-ccCCCCCCCccEEEEEcCCCCCcCC--CCC-CCCCccEEeecCCCCCeeeCCCCCCCCCCC
Q 044605 123 YGLKELKVQNYGGTKFPA-WLGQSSFENLVVLRFRNCNQCTSLP--SVG-HLPLLKNLVIKGMGRMAKAGTTGGDQQAAK 198 (405)
Q Consensus 123 ~~L~~L~l~~~~~~~lp~-~~~~~~l~~L~~L~l~~~~~~~~l~--~l~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 198 (405)
..|+.|.+.++....... ......++|+++|.+.+|..+++-. ++. ..++|+++++..|..+....- ...+.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L----k~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL----KYLAE 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH----HHHHH
Confidence 456777777765433321 1112367888888888887666432 222 367788888877776655422 11234
Q ss_pred CCCcccEEeeccCccccc----cCCCCCCcccEEEEeccCCc
Q 044605 199 GFPCLRELSIINCSKLKG----RLPQHFSSLERIVIMSCEQL 236 (405)
Q Consensus 199 ~~~~L~~L~l~~~~~l~~----~l~~~~~~L~~L~l~~c~~l 236 (405)
++++|++++++.|+.+++ .+..+...++.+...+|.++
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~ 255 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL 255 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc
Confidence 588888888888877765 22235666677766677654
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.05 E-value=1.9e-06 Score=72.55 Aligned_cols=60 Identities=17% Similarity=0.162 Sum_probs=26.4
Q ss_pred CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-----CCcCCccEEeecCC
Q 044605 302 KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-----GLLPSVVYLSIYLC 367 (405)
Q Consensus 302 ~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~i~~c 367 (405)
.+|+|++|++++|++.++.+- ..+..+++|+.|++.+||.- .-+.. ..+|+|+.||-...
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l-----~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNEL-----EPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp H-TT--EEE-TTS---SCCCC-----GGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEET
T ss_pred hCCcCCEEECcCCcCCChHHh-----HHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEc
Confidence 577788888877777765432 22566777888888777642 23322 12356666666554
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.03 E-value=9.2e-06 Score=55.93 Aligned_cols=57 Identities=28% Similarity=0.483 Sum_probs=35.6
Q ss_pred CCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCC
Q 044605 304 SHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLC 367 (405)
Q Consensus 304 ~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c 367 (405)
|+|++|++++|+++.+|...| .++++|++|++++| .++.++.. ..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f------~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSF------SNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTT------TTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHH------cCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 456677777777777766554 56667777777754 44555443 44456777777665
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.02 E-value=1.2e-05 Score=55.42 Aligned_cols=46 Identities=24% Similarity=0.469 Sum_probs=38.4
Q ss_pred ccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605 294 ESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP 345 (405)
Q Consensus 294 ~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~ 345 (405)
+.+|. .+.++++|+.|++++|.++.++...| .++++|++|++++|+
T Consensus 14 ~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f------~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 14 TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAF------SNLPNLRYLDLSNNN 60 (61)
T ss_dssp SEECTTTTTTGTTESEEEETSSSESEEETTTT------TTSTTESEEEETSSS
T ss_pred CccCHHHHcCCCCCCEeEccCCccCccCHHHH------cCCCCCCEEeCcCCc
Confidence 34443 56789999999999999999988765 889999999999875
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.01 E-value=1.3e-06 Score=73.51 Aligned_cols=123 Identities=24% Similarity=0.304 Sum_probs=40.0
Q ss_pred CCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCC
Q 044605 121 PHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGF 200 (405)
Q Consensus 121 ~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 200 (405)
.+.+++.|++.++....+. .++ ..+.+|+.|++++|. ++.++++..++.|++|++.++. +..+.. .....+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~-~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~-I~~i~~-----~l~~~l 87 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLG-ATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNR-ISSISE-----GLDKNL 87 (175)
T ss_dssp --------------------S---TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CH-----HHHHH-
T ss_pred ccccccccccccccccccc-chh-hhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCC-CCcccc-----chHHhC
Confidence 3456788888888766553 232 246888899998887 7888888888899999888753 444421 001137
Q ss_pred CcccEEeeccCccccccCC-----CCCCcccEEEEeccCCc------cccCCCCCCcceEEEcCc
Q 044605 201 PCLRELSIINCSKLKGRLP-----QHFSSLERIVIMSCEQL------LVSCTTLPLLCELEIDGF 254 (405)
Q Consensus 201 ~~L~~L~l~~~~~l~~~l~-----~~~~~L~~L~l~~c~~l------~~~l~~l~~L~~L~l~~~ 254 (405)
|+|++|++.+. .+.+ +. ..+|+|+.|++.+++-- ...+..+|+|+.||-...
T Consensus 88 p~L~~L~L~~N-~I~~-l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 88 PNLQELYLSNN-KISD-LNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TT--EEE-TTS----S-CCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCEEECcCC-cCCC-hHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 88888888763 3332 11 15777888887775522 122333677777765543
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.80 E-value=1.4e-05 Score=77.38 Aligned_cols=167 Identities=28% Similarity=0.400 Sum_probs=91.2
Q ss_pred CCccEEEEEeeCCCCCCcccCCCCCC-CccEEEEEcCCCCCcCC-CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCC
Q 044605 123 YGLKELKVQNYGGTKFPAWLGQSSFE-NLVVLRFRNCNQCTSLP-SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGF 200 (405)
Q Consensus 123 ~~L~~L~l~~~~~~~lp~~~~~~~l~-~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 200 (405)
..+..+.+.++....+|.... .+. +|+.|+++++. +..+| +++.+++|+.|++.++. +..++. .....
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~--~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~------~~~~~ 185 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIG--LLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPK------LLSNL 185 (394)
T ss_pred cceeEEecCCcccccCccccc--cchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhh------hhhhh
Confidence 556666666666666666555 443 67777777665 55554 46667777777776643 333333 01135
Q ss_pred CcccEEeeccCccccccCCC--CCCc-ccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC
Q 044605 201 PCLRELSIINCSKLKGRLPQ--HFSS-LERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG 275 (405)
Q Consensus 201 ~~L~~L~l~~~~~l~~~l~~--~~~~-L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L 275 (405)
+.|+.|++++. .+. .+|. ..++ |+++.+.+.. ..+..+..+.++..+.+.+++
T Consensus 186 ~~L~~L~ls~N-~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-------------------- 243 (394)
T COG4886 186 SNLNNLDLSGN-KIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-------------------- 243 (394)
T ss_pred hhhhheeccCC-ccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce--------------------
Confidence 66666666663 444 3443 1333 5666555542 223333334444444433322
Q ss_pred eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605 276 PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI 346 (405)
Q Consensus 276 l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~ 346 (405)
+..++..+..+++++.|++++|.+++++. +..+.++++|+++++..
T Consensus 244 -----------------~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--------~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 244 -----------------LEDLPESIGNLSNLETLDLSNNQISSISS--------LGSLTNLRELDLSGNSL 289 (394)
T ss_pred -----------------eeeccchhccccccceecccccccccccc--------ccccCccCEEeccCccc
Confidence 22234455566667777777777766654 24566677777766543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.80 E-value=4.7e-06 Score=74.21 Aligned_cols=200 Identities=19% Similarity=0.265 Sum_probs=117.5
Q ss_pred CCCccEEEEEeeCCCC-----CCccc--CCCCCCCccEEEEEcCCCCCcCCCCC-CCCCccEEeecCCC--CCeee-CC-
Q 044605 122 HYGLKELKVQNYGGTK-----FPAWL--GQSSFENLVVLRFRNCNQCTSLPSVG-HLPLLKNLVIKGMG--RMAKA-GT- 189 (405)
Q Consensus 122 ~~~L~~L~l~~~~~~~-----lp~~~--~~~~l~~L~~L~l~~~~~~~~l~~l~-~l~~L~~L~l~~~~--~l~~~-~~- 189 (405)
+..|..|.+.+..+.. .|..+ ....|++|..+.+++|.. ..+-++. .-|.|.++.+.... ..+.+ |.
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~-~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~ 259 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST-ENIVDIELLKPTLQTICVHNTTIQDVPSLLPET 259 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch-hheeceeecCchhheeeeecccccccccccchh
Confidence 5677788776644321 12111 122578899999998872 2222221 24667777764321 11111 11
Q ss_pred -----CCC-C-------CCCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccCCc-cccCCCCCCcceEEEc
Q 044605 190 -----TGG-D-------QQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCEQL-LVSCTTLPLLCELEID 252 (405)
Q Consensus 190 -----~~~-~-------~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~ 252 (405)
.+. . ...+..-+.|+++++++. .++. +-. -.|.++.|+++.+.-. ...+..+++|+.|+++
T Consensus 260 ~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~-iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS 337 (490)
T KOG1259|consen 260 ILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LITQ-IDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLS 337 (490)
T ss_pred hhcCccCCCCCccCCceEEecchHhhhhhcccccc-chhh-hhhhhhhccceeEEeccccceeeehhhhhcccceEeecc
Confidence 111 0 112334568888998884 3332 221 5788999999886533 4567789999999999
Q ss_pred CcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccC
Q 044605 253 GFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFV 330 (405)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l 330 (405)
+|...+ ..++-.++.++ +.++++ .+..+ .+++.+-+|+.|++++|+++.+.+- ..+
T Consensus 338 ~N~Ls~------~~Gwh~KLGNIKtL~La~N----------~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV-----~~I 395 (490)
T KOG1259|consen 338 GNLLAE------CVGWHLKLGNIKTLKLAQN----------KIETL-SGLRKLYSLVNLDLSSNQIEELDEV-----NHI 395 (490)
T ss_pred cchhHh------hhhhHhhhcCEeeeehhhh----------hHhhh-hhhHhhhhheeccccccchhhHHHh-----ccc
Confidence 875443 11122334344 444443 22222 2567888899999999888876432 126
Q ss_pred CCCCCcCEEeeecCCC
Q 044605 331 RNLTSLERLELSRCPI 346 (405)
Q Consensus 331 ~~l~~L~~L~l~~c~~ 346 (405)
+++|.|+++.+.+||.
T Consensus 396 G~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 396 GNLPCLETLRLTGNPL 411 (490)
T ss_pred ccccHHHHHhhcCCCc
Confidence 7899999999999884
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=0.0001 Score=70.01 Aligned_cols=123 Identities=18% Similarity=0.239 Sum_probs=78.9
Q ss_pred HhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCC
Q 044605 115 VLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQ 194 (405)
Q Consensus 115 ~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 194 (405)
+...+..+.++..|++.+|....+|. -..+|++|.+++|..++.+|..- .++|+.|.+.+|..+..++
T Consensus 44 a~~r~~~~~~l~~L~Is~c~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP------ 111 (426)
T PRK15386 44 ITPQIEEARASGRLYIKDCDIESLPV-----LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLP------ 111 (426)
T ss_pred HHHHHHHhcCCCEEEeCCCCCcccCC-----CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccc------
Confidence 33445556889999999998777773 24679999999999888877522 3689999999887776553
Q ss_pred CCCCCCCcccEEeeccCccccccCCCCCCcccEEEEeccC-CccccCCC-C-CCcceEEEcCcCCc
Q 044605 195 QAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCE-QLLVSCTT-L-PLLCELEIDGFGEV 257 (405)
Q Consensus 195 ~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~-~l~~~l~~-l-~~L~~L~l~~~~~l 257 (405)
++|+.|++.+ .... .++.-.++|+.|.+.++. .....++. + ++|++|.+.+|...
T Consensus 112 ------~sLe~L~L~~-n~~~-~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 112 ------ESVRSLEIKG-SATD-SIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred ------cccceEEeCC-CCCc-ccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 3677777754 2222 233333567777764322 11112221 2 47788888777654
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.53 E-value=6.7e-06 Score=73.22 Aligned_cols=127 Identities=15% Similarity=0.135 Sum_probs=85.7
Q ss_pred eeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhcccccccCC
Q 044605 26 VIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSDS 105 (405)
Q Consensus 26 ~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~~~ 105 (405)
+.|+.+|||+|.|+.+..++.-++.++.|++.. +.+..++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~------N~i~~v~---------------------------------- 323 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQ------NRIRTVQ---------------------------------- 323 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccc------cceeeeh----------------------------------
Confidence 567788888888888877777777777775311 1111111
Q ss_pred hhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCe
Q 044605 106 REVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMA 185 (405)
Q Consensus 106 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~ 185 (405)
.+..+++|+.|++++|....+..|-. .+.|++.|.++.|. +.++.+++++=+|..|++.++. ++
T Consensus 324 ------------nLa~L~~L~~LDLS~N~Ls~~~Gwh~--KLGNIKtL~La~N~-iE~LSGL~KLYSLvnLDl~~N~-Ie 387 (490)
T KOG1259|consen 324 ------------NLAELPQLQLLDLSGNLLAECVGWHL--KLGNIKTLKLAQNK-IETLSGLRKLYSLVNLDLSSNQ-IE 387 (490)
T ss_pred ------------hhhhcccceEeecccchhHhhhhhHh--hhcCEeeeehhhhh-HhhhhhhHhhhhheeccccccc-hh
Confidence 23345667778888877777766755 78888999998877 7788888888888999887753 33
Q ss_pred eeCCCCCCCCCCCCCCcccEEeeccCc
Q 044605 186 KAGTTGGDQQAAKGFPCLRELSIINCS 212 (405)
Q Consensus 186 ~~~~~~~~~~~~~~~~~L~~L~l~~~~ 212 (405)
.+.. ....+.+|+|+.+.+.+.+
T Consensus 388 ~lde----V~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 388 ELDE----VNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hHHH----hcccccccHHHHHhhcCCC
Confidence 3322 0113348888888877754
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.51 E-value=0.00011 Score=71.26 Aligned_cols=65 Identities=25% Similarity=0.372 Sum_probs=50.3
Q ss_pred ccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCC
Q 044605 295 SLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLC 367 (405)
Q Consensus 295 ~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c 367 (405)
..+..+.++.++..+.+.+++++.++.. +..++++++|++++| .+.+++......+++.|++++.
T Consensus 223 ~~~~~~~~~~~l~~l~l~~n~~~~~~~~-------~~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 223 ELLSSLSNLKNLSGLELSNNKLEDLPES-------IGNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ecchhhhhcccccccccCCceeeeccch-------hccccccceeccccc-cccccccccccCccCEEeccCc
Confidence 3445667888888888888888876544 578889999999985 6788876655679999999885
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.51 E-value=5.6e-06 Score=79.71 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=70.2
Q ss_pred EEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC-CCCCCCCccEEeecCCCCCeeeCC-CCCCCCCCCCCCcccEEe
Q 044605 130 VQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP-SVGHLPLLKNLVIKGMGRMAKAGT-TGGDQQAAKGFPCLRELS 207 (405)
Q Consensus 130 l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~ 207 (405)
+..+....+|.... .|..|+.+.+.+|. +..+| ++..+..|..++++.+ .+..++. .+ +--|+.|-
T Consensus 82 lsrNR~~elp~~~~--~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC--------~lpLkvli 149 (722)
T KOG0532|consen 82 LSRNRFSELPEEAC--AFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSN-QLSHLPDGLC--------DLPLKVLI 149 (722)
T ss_pred ccccccccCchHHH--HHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccc-hhhcCChhhh--------cCcceeEE
Confidence 33344444444333 34445555554433 22332 3445555555555432 1222222 11 11244444
Q ss_pred eccCccccccCCC---CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCC
Q 044605 208 IINCSKLKGRLPQ---HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTE 282 (405)
Q Consensus 208 l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~ 282 (405)
+++ ++++ .+|. ..+.|..|+++.|. .+|..+..+.+|+.|.+..|+.+ .+|.+.. .|+-
T Consensus 150 ~sN-Nkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-----~lp~El~-~LpL-------- 213 (722)
T KOG0532|consen 150 VSN-NKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-----DLPEELC-SLPL-------- 213 (722)
T ss_pred Eec-Cccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-----hCCHHHh-CCce--------
Confidence 444 2343 3332 34555555555443 33455555555555555555444 2232111 1111
Q ss_pred CccEEecCCCCcccccccCCCCCccEEEEeCCcccc
Q 044605 283 VLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVS 318 (405)
Q Consensus 283 ~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~ 318 (405)
++++++||++..+|..|.+++.|+.|-+.+|-+.+
T Consensus 214 -i~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 214 -IRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred -eeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 11222444555666666666666666666555553
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.50 E-value=5.5e-05 Score=48.03 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=26.6
Q ss_pred eeEEEEEccCCCCccCccccCCCccCcccCc
Q 044605 26 VIYLILVGDLTESKEMPLRIGKLTSLRTLTK 56 (405)
Q Consensus 26 ~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~ 56 (405)
++|++|++++|+|+.+|..+++|++|++|++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l 31 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNL 31 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEe
Confidence 3689999999999999999999999999974
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.40 E-value=2.6e-06 Score=78.98 Aligned_cols=200 Identities=16% Similarity=0.146 Sum_probs=122.9
Q ss_pred CCccEEEEEcCCCCCcCCC---CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCcccccc----CCC
Q 044605 148 ENLVVLRFRNCNQCTSLPS---VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGR----LPQ 220 (405)
Q Consensus 148 ~~L~~L~l~~~~~~~~l~~---l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~----l~~ 220 (405)
..|+.|.+.+|..+.+-+. ....|++++|.+.+|..+....- ...+..++.|+.+++..|..+++. +..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~----~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSL----LSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHH----HHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 5678888888876554321 34578888888888875443311 012335788888888888877752 334
Q ss_pred CCCcccEEEEeccCCccc-----cCCCCCCcceEEEcCcCCccccccccccCCC----CCCCCC--eeecCCCCccEEec
Q 044605 221 HFSSLERIVIMSCEQLLV-----SCTTLPLLCELEIDGFGEVAWINRPVEAGIF----DSSNPG--PEKSRTEVLPWEIG 289 (405)
Q Consensus 221 ~~~~L~~L~l~~c~~l~~-----~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~----~~l~~L--l~l~~~~~l~l~i~ 289 (405)
.+++|+++.+++|+.+.. ....+..++.+...||.... .+.+ .....+ +++..|.
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~-------le~l~~~~~~~~~i~~lnl~~c~------- 279 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE-------LEALLKAAAYCLEILKLNLQHCN------- 279 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc-------HHHHHHHhccChHhhccchhhhc-------
Confidence 788888888888876622 22335556666666665442 1111 111111 2222443
Q ss_pred CCCCcccc--cccCCCCCccEEEEeC-CcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC---CCcCCccEEe
Q 044605 290 SPDQESLP--EGLHKLSHITRISIVG-SYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN---GLLPSVVYLS 363 (405)
Q Consensus 290 ~~~l~~lp--~~~~~l~~L~~L~l~~-~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~ 363 (405)
.++... ..-.+++.|+.|..++ ..+++.+-+. | -.++++|+.|.+..|..+++.... ...+.|+.++
T Consensus 280 --~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a---L--g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 280 --QLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA---L--GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred --cccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH---H--hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence 333322 1123678889998888 5555543322 2 367899999999999987766432 4557899999
Q ss_pred ecCCcchHH
Q 044605 364 IYLCPDLEE 372 (405)
Q Consensus 364 i~~c~~l~~ 372 (405)
+.+|.....
T Consensus 353 ~e~~~~~~d 361 (483)
T KOG4341|consen 353 LEECGLITD 361 (483)
T ss_pred ccccceehh
Confidence 999966544
No 41
>PLN03150 hypothetical protein; Provisional
Probab=97.31 E-value=0.00033 Score=71.76 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=59.9
Q ss_pred cceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCccc-ccccC
Q 044605 246 LCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLV-SFPKG 322 (405)
Q Consensus 246 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~-~l~~~ 322 (405)
++.|+++++...+ .++. .+..+.+| |+++++... +.+|..+..+++|+.|++++|++. .+|+.
T Consensus 420 v~~L~L~~n~L~g----~ip~-~i~~L~~L~~L~Ls~N~l~---------g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~ 485 (623)
T PLN03150 420 IDGLGLDNQGLRG----FIPN-DISKLRHLQSINLSGNSIR---------GNIPPSLGSITSLEVLDLSYNSFNGSIPES 485 (623)
T ss_pred EEEEECCCCCccc----cCCH-HHhCCCCCCEEECCCCccc---------CcCChHHhCCCCCCEEECCCCCCCCCCchH
Confidence 5556666654433 3332 45555555 666655221 256666777777777777777666 45554
Q ss_pred CCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605 323 GLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 323 ~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 368 (405)
+.++++|+.|++++|.....+|.. ..+.++..+++.+++
T Consensus 486 -------l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 486 -------LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred -------HhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 567777777777777665566654 222345566666554
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.30 E-value=0.00021 Score=45.31 Aligned_cols=40 Identities=23% Similarity=0.504 Sum_probs=29.8
Q ss_pred CCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccC
Q 044605 304 SHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFP 351 (405)
Q Consensus 304 ~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~ 351 (405)
++|++|++++|+++++|.. +.++++|++|++++|+ +++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-------l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-------LSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-------GTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCch-------HhCCCCCCEEEecCCC-CCCCc
Confidence 4688888888888888764 5788899999998874 56665
No 43
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.00 E-value=0.00023 Score=37.73 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=19.1
Q ss_pred eEEEEEccCCCCccCccccCCC
Q 044605 27 IYLILVGDLTESKEMPLRIGKL 48 (405)
Q Consensus 27 ~L~~L~L~~~~i~~lP~~i~~L 48 (405)
+|++||+++|+++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4899999999999999988765
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=1.4e-05 Score=71.24 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=10.5
Q ss_pred cCCCCCccEEEEeC
Q 044605 300 LHKLSHITRISIVG 313 (405)
Q Consensus 300 ~~~l~~L~~L~l~~ 313 (405)
+...|+|.+|++.+
T Consensus 359 l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 359 LNSKPSLVYLDVFG 372 (419)
T ss_pred eccCcceEEEEecc
Confidence 45778888888876
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=2.9e-05 Score=69.25 Aligned_cols=171 Identities=21% Similarity=0.321 Sum_probs=101.4
Q ss_pred CCccEEEEEcCCCCCc--CCC-CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC----C
Q 044605 148 ENLVVLRFRNCNQCTS--LPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP----Q 220 (405)
Q Consensus 148 ~~L~~L~l~~~~~~~~--l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~----~ 220 (405)
+.|+.|++++-. ++. +-. +.+..+|+.|.+.+..--..+.. ....=.+|+.|+++.|..++..-. .
T Consensus 185 sRlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~------~iAkN~~L~~lnlsm~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN------TIAKNSNLVRLNLSMCSGFTENALQLLLS 257 (419)
T ss_pred hhhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHH------HHhccccceeeccccccccchhHHHHHHH
Confidence 458888887643 332 111 45677777777776543333322 011135788899888887774211 2
Q ss_pred CCCcccEEEEeccCCcccc----CCC-CCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCcc
Q 044605 221 HFSSLERIVIMSCEQLLVS----CTT-LPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQES 295 (405)
Q Consensus 221 ~~~~L~~L~l~~c~~l~~~----l~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~ 295 (405)
.+..|.+|++++|....+. +.+ -++|+.|+++|+... +..+ .
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn------l~~s---------------------------h 304 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN------LQKS---------------------------H 304 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh------hhhh---------------------------H
Confidence 6888899999988644221 122 368888888886321 1110 0
Q ss_pred cccccCCCCCccEEEEeC-Ccccc-cccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC----CCcCCccEEeecCC
Q 044605 296 LPEGLHKLSHITRISIVG-SYLVS-FPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN----GLLPSVVYLSIYLC 367 (405)
Q Consensus 296 lp~~~~~l~~L~~L~l~~-~~l~~-l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~----~~~~~L~~L~i~~c 367 (405)
+..-...+|+|..|++++ +.++. .... +..++.|++|.++.|-.+ +|.. .--++|.+|++.||
T Consensus 305 ~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-------~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 305 LSTLVRRCPNLVHLDLSDSVMLKNDCFQE-------FFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHHhCCceeeeccccccccCchHHHH-------HHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 111123777888888887 55543 1111 467888888888888654 2221 22258899999888
No 46
>PLN03150 hypothetical protein; Provisional
Probab=96.85 E-value=0.0019 Score=66.27 Aligned_cols=107 Identities=15% Similarity=0.190 Sum_probs=77.1
Q ss_pred ccEEEEeccC---CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccc
Q 044605 225 LERIVIMSCE---QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEG 299 (405)
Q Consensus 225 L~~L~l~~c~---~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~ 299 (405)
++.|++.++. .+|..+..+++|+.|++++|...+ .+|. .+..++.| |+++++... +.+|..
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g----~iP~-~~~~l~~L~~LdLs~N~ls---------g~iP~~ 485 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG----NIPP-SLGSITSLEVLDLSYNSFN---------GSIPES 485 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC----cCCh-HHhCCCCCCEEECCCCCCC---------CCCchH
Confidence 5667776653 346677788999999999987665 4444 56777777 888877332 368888
Q ss_pred cCCCCCccEEEEeCCccc-ccccCCCCCcccCCC-CCCcCEEeeecCCCCcccCC
Q 044605 300 LHKLSHITRISIVGSYLV-SFPKGGLESLSFVRN-LTSLERLELSRCPILKSFPE 352 (405)
Q Consensus 300 ~~~l~~L~~L~l~~~~l~-~l~~~~~~~l~~l~~-l~~L~~L~l~~c~~l~~l~~ 352 (405)
+.++++|+.|++++|.+. .+|.. +.. ...+..+++.+|+.+...|.
T Consensus 486 l~~L~~L~~L~Ls~N~l~g~iP~~-------l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 486 LGQLTSLRILNLNGNSLSGRVPAA-------LGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred HhcCCCCCEEECcCCcccccCChH-------HhhccccCceEEecCCccccCCCC
Confidence 999999999999998877 67754 232 24567888888876665553
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.78 E-value=0.00026 Score=64.59 Aligned_cols=134 Identities=20% Similarity=0.186 Sum_probs=73.8
Q ss_pred CCCCCCccEEEEEeeCCCCCCcccC---CCCCCCccEEEEEcCCC-CCcC----CCCCCCCCccEEeecCCCCCeeeCC-
Q 044605 119 LKPHYGLKELKVQNYGGTKFPAWLG---QSSFENLVVLRFRNCNQ-CTSL----PSVGHLPLLKNLVIKGMGRMAKAGT- 189 (405)
Q Consensus 119 l~~~~~L~~L~l~~~~~~~lp~~~~---~~~l~~L~~L~l~~~~~-~~~l----~~l~~l~~L~~L~l~~~~~l~~~~~- 189 (405)
.+..++|+.+....|.....+.... -...++|+.+.+..+.- ...+ .++.+.|+|++|++.++.....-..
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 4456667777666665444332110 01346777777776651 1111 1356778888888876542221111
Q ss_pred CCCCCCCCCCCCcccEEeeccCccccc--------cCCCCCCcccEEEEeccCC-------ccccCCCCCCcceEEEcCc
Q 044605 190 TGGDQQAAKGFPCLRELSIINCSKLKG--------RLPQHFSSLERIVIMSCEQ-------LLVSCTTLPLLCELEIDGF 254 (405)
Q Consensus 190 ~~~~~~~~~~~~~L~~L~l~~~~~l~~--------~l~~~~~~L~~L~l~~c~~-------l~~~l~~l~~L~~L~l~~~ 254 (405)
.+ -+...+|+|+++++.+|. ++. .+....|+|+.+.+.+|.. +...+...|.|+.|++++|
T Consensus 233 La---kaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 233 LA---KALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HH---HHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 00 122336778888887773 221 1222577888888777642 2344455788888888887
Q ss_pred CC
Q 044605 255 GE 256 (405)
Q Consensus 255 ~~ 256 (405)
..
T Consensus 309 ~l 310 (382)
T KOG1909|consen 309 RL 310 (382)
T ss_pred cc
Confidence 43
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.72 E-value=0.00032 Score=71.96 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=24.7
Q ss_pred CCCcccEEeeccCccccc---cCCCCCCcccEEEEeccC--CccccCCCCCCcceEEEcC
Q 044605 199 GFPCLRELSIINCSKLKG---RLPQHFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDG 253 (405)
Q Consensus 199 ~~~~L~~L~l~~~~~l~~---~l~~~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~ 253 (405)
.||+|++|.+.+-.-..+ .+-.+||+|..|++++++ ++ .++.++++|++|.+.+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence 456666666555221111 111245555555555543 22 4444455555555544
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.64 E-value=0.00027 Score=64.44 Aligned_cols=47 Identities=23% Similarity=0.145 Sum_probs=31.0
Q ss_pred HHHhccCCCCCCccEEEEEeeCCC-CCCcccC--CCCCCCccEEEEEcCC
Q 044605 113 TRVLEMLKPHYGLKELKVQNYGGT-KFPAWLG--QSSFENLVVLRFRNCN 159 (405)
Q Consensus 113 ~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~--~~~l~~L~~L~l~~~~ 159 (405)
....+.+..+++|+++++++|..+ ..+..+. .+++..|++|++.+|.
T Consensus 82 ~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 82 KMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred HHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 334556667779999999987643 2222221 1257888899998887
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.63 E-value=0.00033 Score=71.88 Aligned_cols=100 Identities=25% Similarity=0.311 Sum_probs=44.3
Q ss_pred CCccEEEEEcCCCCCcC-C-CCC-CCCCccEEeecCCCCCee-eCCCCCCCCCCCCCCcccEEeeccCccccccCC-CCC
Q 044605 148 ENLVVLRFRNCNQCTSL-P-SVG-HLPLLKNLVIKGMGRMAK-AGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP-QHF 222 (405)
Q Consensus 148 ~~L~~L~l~~~~~~~~l-~-~l~-~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~-~~~ 222 (405)
++|++|++++......- | .++ .||+|+.|.+.+..-... +.. .-..||+|..|+++++ .++.... +.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~------lc~sFpNL~sLDIS~T-nI~nl~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ------LCASFPNLRSLDISGT-NISNLSGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHH------HhhccCccceeecCCC-CccCcHHHhcc
Confidence 55666666553321110 0 122 366666666655321111 111 1113666666666664 2221111 245
Q ss_pred CcccEEEEeccCCc----cccCCCCCCcceEEEcCc
Q 044605 223 SSLERIVIMSCEQL----LVSCTTLPLLCELEIDGF 254 (405)
Q Consensus 223 ~~L~~L~l~~c~~l----~~~l~~l~~L~~L~l~~~ 254 (405)
++|+.|.+.+-.-. ...+..+.+|+.||+++-
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 55555555442100 123344666666666654
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.50 E-value=0.00061 Score=66.40 Aligned_cols=102 Identities=23% Similarity=0.223 Sum_probs=57.5
Q ss_pred CCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCC
Q 044605 119 LKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAK 198 (405)
Q Consensus 119 l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 198 (405)
+..+.+|..+++.++....+...+. .+++|++|+++++. ++.+.++..++.|+.|++.++. +..+..+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~--~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N~-i~~~~~~~------- 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLS--SLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGNL-ISDISGLE------- 159 (414)
T ss_pred cccccceeeeeccccchhhcccchh--hhhcchheeccccc-cccccchhhccchhhheeccCc-chhccCCc-------
Confidence 5556666667666666544433232 56777777777766 6777777777777777776642 44443311
Q ss_pred CCCcccEEeeccCccccccCC---CCCCcccEEEEec
Q 044605 199 GFPCLRELSIINCSKLKGRLP---QHFSSLERIVIMS 232 (405)
Q Consensus 199 ~~~~L~~L~l~~~~~l~~~l~---~~~~~L~~L~l~~ 232 (405)
.+++|+.+++.++. ++..-+ ..+.+++.+.+.+
T Consensus 160 ~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGG 195 (414)
T ss_pred cchhhhcccCCcch-hhhhhhhhhhhccchHHHhccC
Confidence 25666666666542 221222 3445555555544
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.27 E-value=0.0017 Score=63.08 Aligned_cols=134 Identities=20% Similarity=0.206 Sum_probs=79.5
Q ss_pred cccccCchhhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhh
Q 044605 14 METINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAED 93 (405)
Q Consensus 14 l~~l~~~~~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~ 93 (405)
++.+|..+.. + =|++|-+++|+++.+|.+||.+..|..|+. ..+.....+.+++.|..|+ .+.+..
T Consensus 133 lS~lp~~lC~-l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~--s~nei~slpsql~~l~slr-~l~vrR--------- 198 (722)
T KOG0532|consen 133 LSHLPDGLCD-L-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDV--SKNEIQSLPSQLGYLTSLR-DLNVRR--------- 198 (722)
T ss_pred hhcCChhhhc-C-cceeEEEecCccccCCcccccchhHHHhhh--hhhhhhhchHHhhhHHHHH-HHHHhh---------
Confidence 3444444431 2 356666666666666666666666655542 1111223344555555454 333322
Q ss_pred hhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC----CCC
Q 044605 94 AKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS----VGH 169 (405)
Q Consensus 94 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~----l~~ 169 (405)
.....+++++. .-.|..|+++.|....+|..+. .++.|++|.+.+|+ +...|. -|.
T Consensus 199 ----------------n~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr--~m~~Lq~l~LenNP-LqSPPAqIC~kGk 258 (722)
T KOG0532|consen 199 ----------------NHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNP-LQSPPAQICEKGK 258 (722)
T ss_pred ----------------hhhhhCCHHHh-CCceeeeecccCceeecchhhh--hhhhheeeeeccCC-CCCChHHHHhccc
Confidence 22333445555 3447888888888888998887 89999999999888 666664 334
Q ss_pred CCCccEEeecCC
Q 044605 170 LPLLKNLVIKGM 181 (405)
Q Consensus 170 l~~L~~L~l~~~ 181 (405)
..=-++|++..|
T Consensus 259 VHIFKyL~~qA~ 270 (722)
T KOG0532|consen 259 VHIFKYLSTQAC 270 (722)
T ss_pred eeeeeeecchhc
Confidence 444566666665
No 53
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.98 E-value=0.00041 Score=68.85 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=54.8
Q ss_pred CCCccEEEEEcCCCCCc--C-CCCCCCCCccEEeecCC-CCCeeeCCCCCCCCCCCCCCcccEEeeccCcccccc----C
Q 044605 147 FENLVVLRFRNCNQCTS--L-PSVGHLPLLKNLVIKGM-GRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGR----L 218 (405)
Q Consensus 147 l~~L~~L~l~~~~~~~~--l-~~l~~l~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~----l 218 (405)
+++|+.+.+.+|..+.. + +.....+.|+.|+++++ ......+... ......+++|+.|+++.|..+++. +
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL--LLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh--hhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 56666666666665554 2 22445666777776652 2221111100 011234566666666666543321 1
Q ss_pred CCCCCcccEEEEeccCCc-cc----cCCCCCCcceEEEcCcCCc
Q 044605 219 PQHFSSLERIVIMSCEQL-LV----SCTTLPLLCELEIDGFGEV 257 (405)
Q Consensus 219 ~~~~~~L~~L~l~~c~~l-~~----~l~~l~~L~~L~l~~~~~l 257 (405)
...+++|+.|.+..|..+ .. ....+++|+.|++++|..+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 124566777766666543 11 2233666777777766554
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.90 E-value=0.0037 Score=55.11 Aligned_cols=107 Identities=22% Similarity=0.346 Sum_probs=66.9
Q ss_pred CCCcccEEEEeccCCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCcccccc
Q 044605 221 HFSSLERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEG 299 (405)
Q Consensus 221 ~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~ 299 (405)
.+..|+.+.+.++... ...++.+|+|+.|.+++|.... . ..++..
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~-------~---------------------------~~l~vl 86 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRV-------S---------------------------GGLEVL 86 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccc-------c---------------------------ccceeh
Confidence 4455555555555433 3566777888888888763221 0 112222
Q ss_pred cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-----CCcCCccEEeecCC
Q 044605 300 LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-----GLLPSVVYLSIYLC 367 (405)
Q Consensus 300 ~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~i~~c 367 (405)
...+|+|+.+++++|+++.+. .++-+..+.+|..|++.+|+... +-.. .++++|++|+-.++
T Consensus 87 ~e~~P~l~~l~ls~Nki~~ls-----tl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 87 AEKAPNLKVLNLSGNKIKDLS-----TLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhCCceeEEeecCCcccccc-----ccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 345689999999998888642 22225677888899999887544 3222 34568888877766
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.90 E-value=0.052 Score=46.23 Aligned_cols=103 Identities=20% Similarity=0.326 Sum_probs=66.0
Q ss_pred CCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCc--cccccCC-CCC
Q 044605 146 SFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCS--KLKGRLP-QHF 222 (405)
Q Consensus 146 ~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~l~-~~~ 222 (405)
...+...++++++. +..++.+..++.|.+|.++++ .+..+.. .....+|+|+.|.+.+.+ .+.+.-| ..+
T Consensus 40 ~~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nN-rIt~I~p-----~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 40 TLDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNN-RITRIDP-----DLDTFLPNLKTLILTNNSIQELGDLDPLASC 112 (233)
T ss_pred cccccceecccccc-hhhcccCCCccccceEEecCC-cceeecc-----chhhhccccceEEecCcchhhhhhcchhccC
Confidence 34566777887765 666667778888888888764 4555543 122357888888887742 2222223 267
Q ss_pred CcccEEEEeccCCc------cccCCCCCCcceEEEcCcC
Q 044605 223 SSLERIVIMSCEQL------LVSCTTLPLLCELEIDGFG 255 (405)
Q Consensus 223 ~~L~~L~l~~c~~l------~~~l~~l~~L~~L~l~~~~ 255 (405)
|.|+.|.+-+.+.- .-.+..+|+|++||.++..
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 88888888775522 1234457888888887743
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.80 E-value=0.0042 Score=60.53 Aligned_cols=32 Identities=13% Similarity=-0.003 Sum_probs=22.5
Q ss_pred eeeEEEEEccCCCCccCccccCCCccCcccCc
Q 044605 25 FVIYLILVGDLTESKEMPLRIGKLTSLRTLTK 56 (405)
Q Consensus 25 ~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~ 56 (405)
++.+.+|++.+|.|+.+...+.++.+|++|++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~l 125 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDL 125 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheec
Confidence 56777777777777777555677777777763
No 57
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.58 E-value=0.011 Score=28.93 Aligned_cols=16 Identities=13% Similarity=-0.037 Sum_probs=11.0
Q ss_pred eEEEEEccCCCCccCc
Q 044605 27 IYLILVGDLTESKEMP 42 (405)
Q Consensus 27 ~L~~L~L~~~~i~~lP 42 (405)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 6899999999999887
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.52 E-value=0.0032 Score=62.41 Aligned_cols=127 Identities=26% Similarity=0.308 Sum_probs=79.1
Q ss_pred CCCccEEEEEeeCCCCC---CcccCCCCCCCccEEEEEcC-CCCCcCC-----CCCCCCCccEEeecCCCCCeeeCCCCC
Q 044605 122 HYGLKELKVQNYGGTKF---PAWLGQSSFENLVVLRFRNC-NQCTSLP-----SVGHLPLLKNLVIKGMGRMAKAGTTGG 192 (405)
Q Consensus 122 ~~~L~~L~l~~~~~~~l---p~~~~~~~l~~L~~L~l~~~-~~~~~l~-----~l~~l~~L~~L~l~~~~~l~~~~~~~~ 192 (405)
++.|+.+.+.++..... -... ..+++|+.|++++| ......+ -...+++|+.|++..+..+.+...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l--- 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALA--LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL--- 261 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHH--hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH---
Confidence 67778887777654321 1122 25789999999873 3333222 133468889999988765444432
Q ss_pred CCCCCCCCCcccEEeeccCccccc----cCCCCCCcccEEEEeccCCc-----cccCCCCCCcceEEEcCc
Q 044605 193 DQQAAKGFPCLRELSIINCSKLKG----RLPQHFSSLERIVIMSCEQL-----LVSCTTLPLLCELEIDGF 254 (405)
Q Consensus 193 ~~~~~~~~~~L~~L~l~~~~~l~~----~l~~~~~~L~~L~l~~c~~l-----~~~l~~l~~L~~L~l~~~ 254 (405)
...+..+++|++|.+.+|..+++ .+...+++|++|++++|..+ ......+++|+.|.+..+
T Consensus 262 -~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 262 -SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred -HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 01122388999999888876553 22237899999999999765 222334666666555443
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.06 E-value=0.095 Score=44.69 Aligned_cols=62 Identities=24% Similarity=0.226 Sum_probs=32.0
Q ss_pred cCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCC--CCCcCCCCCCCCCccEEeecC
Q 044605 118 MLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCN--QCTSLPSVGHLPLLKNLVIKG 180 (405)
Q Consensus 118 ~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~--~~~~l~~l~~l~~L~~L~l~~ 180 (405)
.++.++.|..|.+.+|....+...+. .-+++|..|.+.+|+ .+.++.++..+|.|++|.+-+
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~-~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLD-TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cCCCccccceEEecCCcceeeccchh-hhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 35555666666666655555433332 124556666666554 222333455555666655544
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.87 E-value=0.0016 Score=65.11 Aligned_cols=105 Identities=20% Similarity=0.148 Sum_probs=62.7
Q ss_pred cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeC
Q 044605 237 LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVG 313 (405)
Q Consensus 237 ~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~ 313 (405)
...+.-+|.|+.|+++.|+..+ .+.+..+..| |+++++ .++.+|. ...+++ |+.|.+++
T Consensus 180 D~SLqll~ale~LnLshNk~~~-------v~~Lr~l~~LkhLDlsyN----------~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTK-------VDNLRRLPKLKHLDLSYN----------CLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhh-------hHHHHhcccccccccccc----------hhccccccchhhhh-heeeeecc
Confidence 3444445666666666665442 1123333333 444443 3344553 333555 88888888
Q ss_pred CcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC---CCcCCccEEeecCCc
Q 044605 314 SYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN---GLLPSVVYLSIYLCP 368 (405)
Q Consensus 314 ~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~i~~c~ 368 (405)
|.++.+-. +.++.+|+.||+++| .+....+. +.+..|+.|++.|.|
T Consensus 242 N~l~tL~g--------ie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 242 NALTTLRG--------IENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cHHHhhhh--------HHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 88876532 467888899999884 45555443 334578888888876
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.58 E-value=0.0036 Score=62.71 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=53.6
Q ss_pred cCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecC
Q 044605 289 GSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYL 366 (405)
Q Consensus 289 ~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~ 366 (405)
+||.+..+..++.-++.|+.|+++.|+++.+. . +..|+.|++||+++| .+..+|.- ..+ .|+.|.+++
T Consensus 172 syN~L~~mD~SLqll~ale~LnLshNk~~~v~-~-------Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 172 SYNRLVLMDESLQLLPALESLNLSHNKFTKVD-N-------LRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred chhhHHhHHHHHHHHHHhhhhccchhhhhhhH-H-------HHhcccccccccccc-hhccccccchhhh-hheeeeecc
Confidence 67777888888888899999999998888764 2 577888999999984 67777765 233 588888887
Q ss_pred C
Q 044605 367 C 367 (405)
Q Consensus 367 c 367 (405)
.
T Consensus 242 N 242 (1096)
T KOG1859|consen 242 N 242 (1096)
T ss_pred c
Confidence 6
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.45 E-value=0.098 Score=47.32 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=7.9
Q ss_pred cCCCCCCccEEEEEee
Q 044605 118 MLKPHYGLKELKVQNY 133 (405)
Q Consensus 118 ~l~~~~~L~~L~l~~~ 133 (405)
.+..++.|+.|+++.|
T Consensus 92 ile~lP~l~~LNls~N 107 (418)
T KOG2982|consen 92 ILEQLPALTTLNLSCN 107 (418)
T ss_pred HHhcCccceEeeccCC
Confidence 3444555555555444
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.86 E-value=0.039 Score=48.76 Aligned_cols=104 Identities=25% Similarity=0.306 Sum_probs=61.5
Q ss_pred CCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccc--cCCC--C
Q 044605 146 SFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKG--RLPQ--H 221 (405)
Q Consensus 146 ~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~l~~--~ 221 (405)
.+..|+.+.+.++. ++.+..+-.+|+|+.|.++.+..-....- ...+..+|+|+++++++. +++. .++. .
T Consensus 41 ~~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l----~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~ 114 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGL----EVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKE 114 (260)
T ss_pred cccchhhhhhhccc-eeecccCCCcchhhhhcccCCcccccccc----eehhhhCCceeEEeecCC-ccccccccchhhh
Confidence 46667777776665 55555566778888888876521111111 112334688999988874 3331 1211 5
Q ss_pred CCcccEEEEeccCCc------cccCCCCCCcceEEEcCcC
Q 044605 222 FSSLERIVIMSCEQL------LVSCTTLPLLCELEIDGFG 255 (405)
Q Consensus 222 ~~~L~~L~l~~c~~l------~~~l~~l~~L~~L~l~~~~ 255 (405)
+.+|..|++.+|+.. ...|..+|+|+.|+-.+..
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 677777888777643 2334447777777766554
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.28 E-value=0.11 Score=27.19 Aligned_cols=18 Identities=22% Similarity=0.530 Sum_probs=12.6
Q ss_pred CccEEEEeCCcccccccC
Q 044605 305 HITRISIVGSYLVSFPKG 322 (405)
Q Consensus 305 ~L~~L~l~~~~l~~l~~~ 322 (405)
+|+.|++++|+++.||.+
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 467777777777777765
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.52 E-value=0.79 Score=36.13 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=18.6
Q ss_pred CCcccEEEEec-cCCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC
Q 044605 222 FSSLERIVIMS-CEQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG 275 (405)
Q Consensus 222 ~~~L~~L~l~~-c~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L 275 (405)
+.+|+.+.+.. ...+ ...|..+++|+.+.+.+. +. .+....|.++..+
T Consensus 11 ~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~--~~----~i~~~~F~~~~~l 60 (129)
T PF13306_consen 11 CSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN--LT----SIGDNAFSNCKSL 60 (129)
T ss_dssp -TT--EEEETST--EE-TTTTTT-TT-SEEEESST--TS----CE-TTTTTT-TT-
T ss_pred CCCCCEEEECCCeeEeChhhccccccccccccccc--cc----ccceeeeeccccc
Confidence 34555555542 1222 234555666676666553 33 4444445544444
No 66
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.28 E-value=0.096 Score=28.68 Aligned_cols=20 Identities=10% Similarity=-0.140 Sum_probs=17.9
Q ss_pred eeEEEEEccCCCCccCcccc
Q 044605 26 VIYLILVGDLTESKEMPLRI 45 (405)
Q Consensus 26 ~~L~~L~L~~~~i~~lP~~i 45 (405)
++|++|+|++|.++.+|.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 57899999999999999874
No 67
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.28 E-value=0.096 Score=28.68 Aligned_cols=20 Identities=10% Similarity=-0.140 Sum_probs=17.9
Q ss_pred eeEEEEEccCCCCccCcccc
Q 044605 26 VIYLILVGDLTESKEMPLRI 45 (405)
Q Consensus 26 ~~L~~L~L~~~~i~~lP~~i 45 (405)
++|++|+|++|.++.+|.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 57899999999999999874
No 68
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.94 E-value=0.24 Score=44.88 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=64.7
Q ss_pred CCCccEEEEEeeCCCCCCccc--C--CCCCCCccEEEEEcCCCCCcCCCC-CCCCCccEEeecCCCCCeeeCCCCCCCCC
Q 044605 122 HYGLKELKVQNYGGTKFPAWL--G--QSSFENLVVLRFRNCNQCTSLPSV-GHLPLLKNLVIKGMGRMAKAGTTGGDQQA 196 (405)
Q Consensus 122 ~~~L~~L~l~~~~~~~lp~~~--~--~~~l~~L~~L~l~~~~~~~~l~~l-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 196 (405)
+.+++.+++.+|.. .+|- + ...++.|+.|+++.|+...++..+ ..+.+|++|.+.+..--..-. ...
T Consensus 70 ~~~v~elDL~~N~i---SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~-----~s~ 141 (418)
T KOG2982|consen 70 VTDVKELDLTGNLI---SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQS-----TSS 141 (418)
T ss_pred hhhhhhhhcccchh---ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhh-----hhh
Confidence 34566677766653 2342 1 126788999999887744444433 356788888887643211111 112
Q ss_pred CCCCCcccEEeeccCccccc------cCCCCCCcccEEEEeccCCc-----cccCCCCCCcceEEEcCcCC
Q 044605 197 AKGFPCLRELSIINCSKLKG------RLPQHFSSLERIVIMSCEQL-----LVSCTTLPLLCELEIDGFGE 256 (405)
Q Consensus 197 ~~~~~~L~~L~l~~~~~l~~------~l~~~~~~L~~L~l~~c~~l-----~~~l~~l~~L~~L~l~~~~~ 256 (405)
...+|.+++|+++..+ +.. ...+.-+.+..|....|... -..-..+|++..+.+-.|+.
T Consensus 142 l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~Pl 211 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPL 211 (418)
T ss_pred hhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcc
Confidence 3346777777776531 111 11112334555555555421 01111256666666666643
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.78 E-value=0.13 Score=28.21 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=15.7
Q ss_pred CCCccEEEEeCCcccccccCCC
Q 044605 303 LSHITRISIVGSYLVSFPKGGL 324 (405)
Q Consensus 303 l~~L~~L~l~~~~l~~l~~~~~ 324 (405)
+++|+.|++++|+++.+|...|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4567788888888887776544
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.78 E-value=0.13 Score=28.21 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=15.7
Q ss_pred CCCccEEEEeCCcccccccCCC
Q 044605 303 LSHITRISIVGSYLVSFPKGGL 324 (405)
Q Consensus 303 l~~L~~L~l~~~~l~~l~~~~~ 324 (405)
+++|+.|++++|+++.+|...|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4567788888888887776544
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.91 E-value=1.6 Score=34.38 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=19.3
Q ss_pred CCcccEEeeccCccccccCCC----CCCcccEEEEecc-CCc-cccCCCCCCcceEEEcC
Q 044605 200 FPCLRELSIINCSKLKGRLPQ----HFSSLERIVIMSC-EQL-LVSCTTLPLLCELEIDG 253 (405)
Q Consensus 200 ~~~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c-~~l-~~~l~~l~~L~~L~l~~ 253 (405)
+.+|+.+.+.+ .++ .++. .+++|+.+.+... ..+ ...|..+++++.+.+.+
T Consensus 11 ~~~l~~i~~~~--~~~-~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 11 CSNLESITFPN--TIK-KIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp -TT--EEEETS--T---EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS
T ss_pred CCCCCEEEECC--Cee-EeChhhcccccccccccccccccccceeeeecccccccccccc
Confidence 44566666543 222 1221 3445666666531 122 23344555666666643
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.86 E-value=0.0092 Score=53.19 Aligned_cols=101 Identities=21% Similarity=0.346 Sum_probs=58.6
Q ss_pred CCcccEEEEeccCCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCccccccc
Q 044605 222 FSSLERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGL 300 (405)
Q Consensus 222 ~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~~ 300 (405)
+.+.++|+.++|.-- ...+..+|.|++|.++-|+... + ..+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIss-------------------------------------L-~pl 59 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISS-------------------------------------L-APL 59 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeecccccc-------------------------------------c-hhH
Confidence 344556666666522 2444567777777776553321 1 124
Q ss_pred CCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC------CCcCCccEEeec
Q 044605 301 HKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN------GLLPSVVYLSIY 365 (405)
Q Consensus 301 ~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~------~~~~~L~~L~i~ 365 (405)
..+++|++|++..|.+.++.+ +..+.++|+|+.|-+..||--..-+.. ..+|+|+.||=.
T Consensus 60 ~rCtrLkElYLRkN~I~sldE-----L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 60 QRCTRLKELYLRKNCIESLDE-----LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred HHHHHHHHHHHHhcccccHHH-----HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 466777777777777766633 333677788888877777754443322 234567766543
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.09 E-value=0.053 Score=46.16 Aligned_cols=66 Identities=27% Similarity=0.369 Sum_probs=41.5
Q ss_pred CCCCccEEEEeC-CcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCcchHH
Q 044605 302 KLSHITRISIVG-SYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCPDLEE 372 (405)
Q Consensus 302 ~l~~L~~L~l~~-~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~l~~ 372 (405)
++++++.|.+.+ ..+.+.. ++.+. +-.++|++|++++|+.+++-.-. ..+++|+.|.+.+.|.+..
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~---L~~l~--~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWC---LERLG--GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred ccchhhhheeccccchhhHH---HHHhc--ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 555556665554 3333322 22222 24588999999999988776443 3456889999998876643
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.27 E-value=0.088 Score=44.87 Aligned_cols=79 Identities=13% Similarity=0.227 Sum_probs=43.9
Q ss_pred CccEEEEEcCCCCC--cCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC---CCCC
Q 044605 149 NLVVLRFRNCNQCT--SLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP---QHFS 223 (405)
Q Consensus 149 ~L~~L~l~~~~~~~--~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~---~~~~ 223 (405)
.++.++.+++. +. .+..+..++.++.|.+.+|..+...+- ....+.+|+|+.|++++|+.+++.-- ..++
T Consensus 102 ~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L----~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCL----ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK 176 (221)
T ss_pred eEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHH----HHhcccccchheeeccCCCeechhHHHHHHHhh
Confidence 35555655543 22 122356677777777777776666544 01122567777777777777664111 1455
Q ss_pred cccEEEEec
Q 044605 224 SLERIVIMS 232 (405)
Q Consensus 224 ~L~~L~l~~ 232 (405)
+|+.|.+.+
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 555555544
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=86.21 E-value=0.12 Score=41.29 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=20.5
Q ss_pred CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605 302 KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP 345 (405)
Q Consensus 302 ~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~ 345 (405)
.++.++.|++++|.+.++|++ +..++.|+.|++..|+
T Consensus 75 kf~t~t~lNl~~neisdvPeE-------~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISDVPEE-------LAAMPALRSLNLRFNP 111 (177)
T ss_pred ccchhhhhhcchhhhhhchHH-------HhhhHHhhhcccccCc
Confidence 444555555555555555555 3555555555555544
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.04 E-value=0.54 Score=25.68 Aligned_cols=15 Identities=13% Similarity=0.406 Sum_probs=8.3
Q ss_pred CccEEeecCCcchHH
Q 044605 358 SVVYLSIYLCPDLEE 372 (405)
Q Consensus 358 ~L~~L~i~~c~~l~~ 372 (405)
+|++|++++|+.+++
T Consensus 3 ~L~~L~l~~C~~itD 17 (26)
T smart00367 3 NLRELDLSGCTNITD 17 (26)
T ss_pred CCCEeCCCCCCCcCH
Confidence 555555555555544
No 77
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.29 E-value=0.18 Score=45.22 Aligned_cols=61 Identities=15% Similarity=0.095 Sum_probs=39.8
Q ss_pred hhhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEc
Q 044605 21 FTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTIL 83 (405)
Q Consensus 21 ~~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~ 83 (405)
+-..++.|++|.||-|.|+.+ ..+..+++|+.|.+....-.+...+.-|.+|..|+ .|.+.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr-~LWL~ 96 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR-TLWLD 96 (388)
T ss_pred HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh-hHhhc
Confidence 334579999999999999988 45889999999975333222223333344455455 44443
No 78
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=83.69 E-value=0.061 Score=43.00 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=35.6
Q ss_pred CCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccC
Q 044605 292 DQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFP 351 (405)
Q Consensus 292 ~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~ 351 (405)
+++.+|..+..++.|+.|++++|.+...|+- +..+.+|..|+..++ ....++
T Consensus 88 eisdvPeE~Aam~aLr~lNl~~N~l~~~p~v-------i~~L~~l~~Lds~~n-a~~eid 139 (177)
T KOG4579|consen 88 EISDVPEELAAMPALRSLNLRFNPLNAEPRV-------IAPLIKLDMLDSPEN-ARAEID 139 (177)
T ss_pred hhhhchHHHhhhHHhhhcccccCccccchHH-------HHHHHhHHHhcCCCC-ccccCc
Confidence 5567888888999999999999888776654 233556666666553 334444
No 79
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=82.33 E-value=1.4 Score=39.68 Aligned_cols=49 Identities=29% Similarity=0.409 Sum_probs=36.3
Q ss_pred HHHHHhccCCCCCCccEEEEEeeC-CCCCCcccCC--CCCCCccEEEEEcCC
Q 044605 111 IQTRVLEMLKPHYGLKELKVQNYG-GTKFPAWLGQ--SSFENLVVLRFRNCN 159 (405)
Q Consensus 111 ~~~~~~~~l~~~~~L~~L~l~~~~-~~~lp~~~~~--~~l~~L~~L~l~~~~ 159 (405)
.....++.+..|++|++.++++|. +..+|..+.. ++-+.|++|++.+|.
T Consensus 80 ~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 80 NLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 445567778889999999999876 4556654331 356889999998887
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.60 E-value=1 Score=24.67 Aligned_cols=18 Identities=11% Similarity=-0.079 Sum_probs=16.1
Q ss_pred eeEEEEEccCCCCccCcc
Q 044605 26 VIYLILVGDLTESKEMPL 43 (405)
Q Consensus 26 ~~L~~L~L~~~~i~~lP~ 43 (405)
++|++|+.++|+++.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 478999999999999986
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.90 E-value=3.3 Score=22.74 Aligned_cols=16 Identities=13% Similarity=-0.120 Sum_probs=13.2
Q ss_pred eeEEEEEccCCCCccC
Q 044605 26 VIYLILVGDLTESKEM 41 (405)
Q Consensus 26 ~~L~~L~L~~~~i~~l 41 (405)
.+|+.|+++.|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4788999999998665
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.74 E-value=4.8 Score=22.38 Aligned_cols=14 Identities=7% Similarity=-0.372 Sum_probs=11.9
Q ss_pred eeEEEEEccCCCCc
Q 044605 26 VIYLILVGDLTESK 39 (405)
Q Consensus 26 ~~L~~L~L~~~~i~ 39 (405)
+.|++|||++|.++
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 47899999999886
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=59.96 E-value=2.6 Score=22.28 Aligned_cols=14 Identities=7% Similarity=-0.313 Sum_probs=10.0
Q ss_pred eeEEEEEccCCCCc
Q 044605 26 VIYLILVGDLTESK 39 (405)
Q Consensus 26 ~~L~~L~L~~~~i~ 39 (405)
++|++|++++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 57889999999876
No 84
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=55.72 E-value=19 Score=32.65 Aligned_cols=109 Identities=12% Similarity=0.056 Sum_probs=68.6
Q ss_pred CCCCccEEEEEcCCCCCcCCC-----CCCCCCccEEeecCCCCCeeeCC--CCCC------CCCCCCCCcccEEeeccCc
Q 044605 146 SFENLVVLRFRNCNQCTSLPS-----VGHLPLLKNLVIKGMGRMAKAGT--TGGD------QQAAKGFPCLRELSIINCS 212 (405)
Q Consensus 146 ~l~~L~~L~l~~~~~~~~l~~-----l~~l~~L~~L~l~~~~~l~~~~~--~~~~------~~~~~~~~~L~~L~l~~~~ 212 (405)
.|+.|+..+++.|..-...|. +.+-..|++|.+++| ++..+.. .|.. .--+..-|.|+.......
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN- 167 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN- 167 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-
Confidence 689999999999986655553 667899999999886 3554433 2210 001223467777765442
Q ss_pred cccccCCC--------CCCcccEEEEeccCCcccc--------CCCCCCcceEEEcCcCCc
Q 044605 213 KLKGRLPQ--------HFSSLERIVIMSCEQLLVS--------CTTLPLLCELEIDGFGEV 257 (405)
Q Consensus 213 ~l~~~l~~--------~~~~L~~L~l~~c~~l~~~--------l~~l~~L~~L~l~~~~~l 257 (405)
.+. ..+. .-..|+.+.+..+.-=|.+ +..+.+|+.|++++|...
T Consensus 168 Rle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 168 RLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred hhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 232 1221 2357888888775433433 334789999999998554
No 85
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=42.35 E-value=46 Score=20.60 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=17.4
Q ss_pred CCcCEEeeecCCCCcccCCCCCcCCccEEeecC
Q 044605 334 TSLERLELSRCPILKSFPENGLLPSVVYLSIYL 366 (405)
Q Consensus 334 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~ 366 (405)
++++.|.+.+ ..-..+..+..|++++.|.+..
T Consensus 12 ~~l~~L~~g~-~fn~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGS-SFNQPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECC-ccCccCCCCccCCCceEEEeeC
Confidence 4566666633 1223344446666777776653
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.34 E-value=33 Score=34.27 Aligned_cols=62 Identities=26% Similarity=0.231 Sum_probs=37.9
Q ss_pred CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC-CCcccCC---CCCcCCccEEeecCCc
Q 044605 302 KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP-ILKSFPE---NGLLPSVVYLSIYLCP 368 (405)
Q Consensus 302 ~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~-~l~~l~~---~~~~~~L~~L~i~~c~ 368 (405)
+.+.+.++.+++|++..+.. +..+. ...|.|++|++++|. .+.+-++ ...+ .|++|-+.|.|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~--~ssls--q~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNP 281 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDA--LSSLS--QIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNP 281 (585)
T ss_pred CCcceeeeecccchhhchhh--hhHHH--HhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCc
Confidence 77778888888877766531 12222 456788888888861 2222222 1232 67888888876
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=24.83 E-value=34 Score=34.14 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=15.8
Q ss_pred CCCCccEEEEEcCC--CCCcCCCCC-CCCCccEEeecCC
Q 044605 146 SFENLVVLRFRNCN--QCTSLPSVG-HLPLLKNLVIKGM 181 (405)
Q Consensus 146 ~l~~L~~L~l~~~~--~~~~l~~l~-~l~~L~~L~l~~~ 181 (405)
+++.+..+++++|. ++..+.++. ..|+|+.|+++++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34455555555544 111222222 2455555555544
Done!