Query 044605
Match_columns 405
No_of_seqs 143 out of 2483
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 08:17:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 4E-24 1.4E-28 222.6 5.5 347 22-392 314-766 (768)
2 3vq2_A TLR4, TOLL-like recepto 99.9 7.8E-22 2.7E-26 200.1 22.1 251 119-399 281-558 (606)
3 4eco_A Uncharacterized protein 99.9 1.5E-22 5E-27 206.3 12.4 335 13-398 194-599 (636)
4 4ecn_A Leucine-rich repeat pro 99.9 2.1E-21 7E-26 202.3 20.8 323 16-399 439-840 (876)
5 2z63_A TOLL-like receptor 4, v 99.9 3.1E-21 1E-25 194.1 18.8 224 119-367 278-528 (570)
6 3t6q_A CD180 antigen; protein- 99.9 5.9E-21 2E-25 193.6 19.3 218 122-367 277-510 (606)
7 3rgz_A Protein brassinosteroid 99.9 2E-22 7E-27 209.7 7.8 252 122-399 393-717 (768)
8 3v47_A TOLL-like receptor 5B a 99.9 4.6E-21 1.6E-25 187.5 16.0 322 14-368 22-406 (455)
9 3o6n_A APL1; leucine-rich repe 99.9 1.6E-20 5.5E-25 180.1 19.4 208 121-368 139-350 (390)
10 4fmz_A Internalin; leucine ric 99.8 3.4E-20 1.2E-24 174.9 19.6 299 24-399 42-346 (347)
11 3t6q_A CD180 antigen; protein- 99.8 1.1E-20 3.9E-25 191.5 17.3 334 14-368 24-460 (606)
12 4fmz_A Internalin; leucine ric 99.8 2.8E-20 9.4E-25 175.5 18.4 278 22-368 62-344 (347)
13 3oja_B Anopheles plasmodium-re 99.8 2.6E-20 9E-25 188.4 19.2 287 16-368 65-356 (597)
14 1o6v_A Internalin A; bacterial 99.8 3E-19 1E-23 175.3 25.5 320 23-400 65-389 (466)
15 4ecn_A Leucine-rich repeat pro 99.8 9.7E-21 3.3E-25 197.3 15.0 319 17-368 481-838 (876)
16 2id5_A Lingo-1, leucine rich r 99.8 2.7E-19 9.3E-24 176.1 24.5 293 13-368 22-331 (477)
17 4eco_A Uncharacterized protein 99.8 3.4E-21 1.2E-25 196.3 10.5 320 17-368 239-598 (636)
18 2z81_A CD282 antigen, TOLL-lik 99.8 9.5E-21 3.3E-25 189.7 13.2 156 222-398 333-509 (549)
19 2z7x_B TOLL-like receptor 1, v 99.8 6.6E-20 2.3E-24 182.4 17.7 211 124-368 248-479 (520)
20 3vq2_A TLR4, TOLL-like recepto 99.8 1.8E-20 6.1E-25 190.1 13.6 226 146-399 283-534 (606)
21 3bz5_A Internalin-J, INLJ; leu 99.8 7.7E-19 2.6E-23 171.7 23.1 183 23-254 39-222 (457)
22 2z7x_B TOLL-like receptor 1, v 99.8 3.4E-19 1.2E-23 177.3 20.3 67 13-84 11-78 (520)
23 2id5_A Lingo-1, leucine rich r 99.8 3.1E-19 1.1E-23 175.7 19.5 276 14-346 44-332 (477)
24 1o6v_A Internalin A; bacterial 99.8 2.5E-19 8.5E-24 175.9 17.4 296 22-368 86-386 (466)
25 2z81_A CD282 antigen, TOLL-lik 99.8 2.1E-19 7.3E-24 179.9 17.2 67 13-84 16-83 (549)
26 3o6n_A APL1; leucine-rich repe 99.8 4.2E-19 1.4E-23 170.2 17.5 302 25-399 44-352 (390)
27 2ft3_A Biglycan; proteoglycan, 99.8 4.2E-19 1.4E-23 166.4 16.9 279 10-345 12-305 (332)
28 1ziw_A TOLL-like receptor 3; i 99.8 2.2E-18 7.6E-23 177.0 23.5 321 27-368 249-620 (680)
29 3j0a_A TOLL-like receptor 5; m 99.8 1.3E-18 4.4E-23 182.9 21.6 353 13-400 15-440 (844)
30 1ziw_A TOLL-like receptor 3; i 99.8 1.5E-18 5.3E-23 178.2 21.7 63 331-399 533-597 (680)
31 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-18 4.2E-23 183.1 20.5 35 22-56 69-104 (844)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2E-18 6.8E-23 173.5 20.7 66 14-84 43-109 (562)
33 2z63_A TOLL-like receptor 4, v 99.8 4.3E-19 1.5E-23 178.4 15.5 208 117-351 299-535 (570)
34 4fcg_A Uncharacterized protein 99.8 1.8E-18 6.1E-23 161.8 17.4 212 122-366 80-310 (328)
35 1xku_A Decorin; proteoglycan, 99.8 8.5E-18 2.9E-22 157.3 20.2 263 27-345 32-304 (330)
36 3v47_A TOLL-like receptor 5B a 99.8 9.6E-19 3.3E-23 171.0 14.1 312 15-351 43-412 (455)
37 3oja_B Anopheles plasmodium-re 99.8 2.6E-18 9E-23 173.8 17.5 302 25-399 50-358 (597)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.9E-17 6.4E-22 166.4 23.5 147 198-368 350-508 (562)
39 1ogq_A PGIP-2, polygalacturona 99.8 2.1E-18 7.1E-23 160.4 12.6 241 26-370 50-304 (313)
40 3bz5_A Internalin-J, INLJ; leu 99.7 8.3E-17 2.8E-21 157.3 21.0 56 22-84 60-115 (457)
41 4g8a_A TOLL-like receptor 4; l 99.7 2.5E-16 8.6E-21 160.0 24.9 149 199-368 418-578 (635)
42 4g8a_A TOLL-like receptor 4; l 99.7 6.9E-17 2.4E-21 164.1 19.9 143 240-398 416-579 (635)
43 2z80_A TOLL-like receptor 2, v 99.7 2.5E-17 8.5E-22 155.7 14.3 204 119-347 96-314 (353)
44 1jl5_A Outer protein YOPM; leu 99.7 4.8E-17 1.6E-21 158.8 16.6 34 25-58 10-43 (454)
45 3zyi_A Leucine-rich repeat-con 99.7 9.6E-17 3.3E-21 156.8 18.2 174 119-345 119-301 (452)
46 1jl5_A Outer protein YOPM; leu 99.7 2E-16 6.8E-21 154.4 19.9 176 118-346 190-369 (454)
47 3zyj_A Leucine-rich repeat-con 99.7 1.1E-16 3.8E-21 155.8 18.1 177 119-345 108-290 (440)
48 4fcg_A Uncharacterized protein 99.7 6E-17 2E-21 151.5 14.4 208 26-275 81-303 (328)
49 3g06_A SSPH2 (leucine-rich rep 99.7 4.9E-15 1.7E-19 149.4 24.1 253 25-368 39-295 (622)
50 3o53_A Protein LRIM1, AGAP0063 99.7 1.2E-16 4.3E-21 148.6 10.4 211 120-369 31-249 (317)
51 2z66_A Variable lymphocyte rec 99.7 6.2E-16 2.1E-20 143.0 14.7 217 122-368 27-259 (306)
52 3oja_A Leucine-rich immune mol 99.7 2.9E-16 9.8E-21 154.7 12.7 214 119-370 30-250 (487)
53 3zyj_A Leucine-rich repeat-con 99.7 4.4E-15 1.5E-19 144.5 20.9 212 123-368 64-290 (440)
54 1ogq_A PGIP-2, polygalacturona 99.7 3E-16 1E-20 145.7 11.8 238 123-397 50-302 (313)
55 2z66_A Variable lymphocyte rec 99.7 3.4E-16 1.2E-20 144.7 12.0 172 122-346 77-260 (306)
56 1ozn_A Reticulon 4 receptor; N 99.7 3.8E-15 1.3E-19 136.2 18.0 209 127-368 15-236 (285)
57 3zyi_A Leucine-rich repeat-con 99.6 7.7E-15 2.6E-19 143.3 20.7 211 123-368 75-301 (452)
58 3g06_A SSPH2 (leucine-rich rep 99.6 6.3E-15 2.2E-19 148.6 20.1 247 14-351 52-301 (622)
59 2xwt_C Thyrotropin receptor; s 99.6 1.1E-14 3.9E-19 129.6 19.3 193 148-369 31-238 (239)
60 1xku_A Decorin; proteoglycan, 99.6 8.8E-15 3E-19 136.7 19.3 239 118-396 71-329 (330)
61 1wwl_A Monocyte differentiatio 99.6 2.6E-16 8.9E-21 146.1 7.9 195 121-367 93-306 (312)
62 2ft3_A Biglycan; proteoglycan, 99.6 1.5E-14 5.2E-19 135.3 17.4 242 118-397 73-331 (332)
63 3o53_A Protein LRIM1, AGAP0063 99.6 8.9E-17 3E-21 149.6 1.4 38 19-56 27-65 (317)
64 1ozn_A Reticulon 4 receptor; N 99.6 9.6E-15 3.3E-19 133.6 14.5 196 122-347 31-238 (285)
65 2z80_A TOLL-like receptor 2, v 99.6 5.2E-15 1.8E-19 139.7 11.7 217 123-368 52-312 (353)
66 1p9a_G Platelet glycoprotein I 99.6 1.8E-13 6.3E-18 125.4 19.0 195 119-368 6-206 (290)
67 2xwt_C Thyrotropin receptor; s 99.6 4.8E-14 1.6E-18 125.5 14.6 191 123-346 31-238 (239)
68 4ay9_X Follicle-stimulating ho 99.6 4E-13 1.4E-17 126.6 21.4 211 123-366 30-255 (350)
69 2o6q_A Variable lymphocyte rec 99.5 2.2E-13 7.6E-18 123.5 17.9 189 124-368 17-216 (270)
70 1p9a_G Platelet glycoprotein I 99.5 1.1E-13 3.8E-18 126.9 15.8 174 122-346 30-207 (290)
71 2z62_A TOLL-like receptor 4, v 99.5 7.6E-14 2.6E-18 127.0 12.7 124 123-256 28-161 (276)
72 1h6u_A Internalin H; cell adhe 99.5 6.4E-14 2.2E-18 129.6 11.9 188 122-351 40-233 (308)
73 1h6u_A Internalin H; cell adhe 99.5 7.2E-14 2.5E-18 129.3 11.8 184 146-368 39-228 (308)
74 2o6q_A Variable lymphocyte rec 99.5 1.1E-12 3.7E-17 118.9 18.9 193 148-399 16-218 (270)
75 3ogk_B Coronatine-insensitive 99.5 8.8E-16 3E-20 155.0 -2.3 222 117-368 264-524 (592)
76 3rfs_A Internalin B, repeat mo 99.5 3.7E-13 1.3E-17 122.1 14.5 176 122-347 40-218 (272)
77 2z62_A TOLL-like receptor 4, v 99.5 5.8E-13 2E-17 121.1 14.8 196 136-366 20-233 (276)
78 3oja_A Leucine-rich immune mol 99.5 2.4E-13 8.1E-18 133.9 12.0 212 146-399 32-250 (487)
79 3rfs_A Internalin B, repeat mo 99.4 4.1E-13 1.4E-17 121.9 11.4 175 118-353 58-241 (272)
80 1z7x_W Ribonuclease inhibitor; 99.4 9.6E-16 3.3E-20 149.9 -8.0 267 115-399 105-411 (461)
81 2ast_B S-phase kinase-associat 99.4 1.1E-14 3.8E-19 136.2 -1.0 196 123-344 70-282 (336)
82 1wwl_A Monocyte differentiatio 99.4 6.2E-13 2.1E-17 123.2 10.3 204 146-401 93-311 (312)
83 4glp_A Monocyte differentiatio 99.4 2.4E-12 8.2E-17 119.1 13.4 195 122-368 90-305 (310)
84 3m19_A Variable lymphocyte rec 99.4 7E-12 2.4E-16 112.3 15.6 172 124-346 15-191 (251)
85 2ast_B S-phase kinase-associat 99.4 5.9E-15 2E-19 138.2 -4.8 44 299-351 267-310 (336)
86 4ay9_X Follicle-stimulating ho 99.4 1.1E-11 3.8E-16 116.6 17.2 214 126-371 12-237 (350)
87 2p1m_B Transport inhibitor res 99.4 3.2E-15 1.1E-19 150.9 -9.5 196 146-369 287-518 (594)
88 3ogk_B Coronatine-insensitive 99.4 1.2E-14 4.1E-19 146.6 -5.5 315 23-366 189-547 (592)
89 3m19_A Variable lymphocyte rec 99.3 3.8E-11 1.3E-15 107.5 17.0 172 148-368 14-190 (251)
90 4ezg_A Putative uncharacterize 99.3 8.5E-12 2.9E-16 107.4 10.9 38 300-345 155-192 (197)
91 1z7x_W Ribonuclease inhibitor; 99.3 2.8E-15 9.4E-20 146.6 -12.7 229 121-368 140-409 (461)
92 4ezg_A Putative uncharacterize 99.3 9.2E-12 3.1E-16 107.2 10.8 150 146-368 42-192 (197)
93 1h6t_A Internalin B; cell adhe 99.3 7.8E-12 2.7E-16 114.6 10.2 163 122-345 45-211 (291)
94 3cvr_A Invasion plasmid antige 99.3 3.8E-11 1.3E-15 119.7 14.4 178 123-351 59-247 (571)
95 1h6t_A Internalin B; cell adhe 99.2 2.9E-11 9.9E-16 110.8 11.2 151 118-321 63-217 (291)
96 4glp_A Monocyte differentiatio 99.2 4E-11 1.4E-15 110.9 12.0 209 147-401 90-309 (310)
97 2p1m_B Transport inhibitor res 99.2 1.4E-14 4.6E-19 146.3 -13.3 61 333-398 455-518 (594)
98 1m9s_A Internalin B; cell inva 99.2 1.9E-11 6.3E-16 123.1 9.4 121 122-256 42-165 (605)
99 2ca6_A RAN GTPase-activating p 99.2 4.4E-13 1.5E-17 128.0 -3.6 185 116-346 87-315 (386)
100 1m9s_A Internalin B; cell inva 99.2 6.5E-11 2.2E-15 119.1 11.0 161 147-344 42-207 (605)
101 2ca6_A RAN GTPase-activating p 99.2 9.5E-13 3.3E-17 125.7 -3.4 232 116-368 25-314 (386)
102 3cvr_A Invasion plasmid antige 99.1 9.5E-10 3.2E-14 109.6 15.4 177 148-368 59-241 (571)
103 3e6j_A Variable lymphocyte rec 99.1 1.3E-09 4.6E-14 95.9 13.6 123 223-368 40-170 (229)
104 2xot_A Amphoterin-induced prot 99.1 5.3E-10 1.8E-14 105.6 11.2 168 127-345 22-200 (361)
105 2v9t_B SLIT homolog 2 protein 99.1 2E-09 6.8E-14 94.2 14.1 107 240-368 52-163 (220)
106 1xeu_A Internalin C; cellular 99.1 5.5E-10 1.9E-14 100.6 10.7 98 147-255 40-139 (263)
107 3e6j_A Variable lymphocyte rec 99.1 1.1E-09 3.7E-14 96.6 12.1 150 150-347 21-172 (229)
108 2v70_A SLIT-2, SLIT homolog 2 99.1 1.6E-09 5.6E-14 94.8 13.1 42 298-345 123-164 (220)
109 2v70_A SLIT-2, SLIT homolog 2 99.0 3.1E-09 1.1E-13 92.9 13.3 107 240-368 53-164 (220)
110 2o6s_A Variable lymphocyte rec 99.0 1.4E-09 4.8E-14 94.2 10.5 143 152-346 11-160 (208)
111 2v9t_B SLIT homolog 2 protein 99.0 6.3E-09 2.1E-13 91.0 14.7 44 297-346 121-164 (220)
112 3goz_A Leucine-rich repeat-con 99.0 1.9E-11 6.5E-16 115.6 -2.1 47 299-345 248-295 (362)
113 2o6s_A Variable lymphocyte rec 99.0 8.9E-09 3E-13 89.1 14.6 107 240-368 48-159 (208)
114 3goz_A Leucine-rich repeat-con 99.0 6.3E-12 2.1E-16 118.9 -7.1 224 119-368 18-295 (362)
115 2ell_A Acidic leucine-rich nuc 99.0 3.2E-09 1.1E-13 88.5 10.1 54 200-255 23-82 (168)
116 2xot_A Amphoterin-induced prot 98.9 5.9E-09 2E-13 98.4 12.2 171 151-368 21-200 (361)
117 1xeu_A Internalin C; cellular 98.9 5.4E-09 1.9E-13 94.1 11.1 160 147-345 18-183 (263)
118 2ell_A Acidic leucine-rich nuc 98.9 1.5E-09 5.1E-14 90.6 6.3 124 221-368 22-158 (168)
119 1dce_A Protein (RAB geranylger 98.9 1.1E-11 3.9E-16 123.8 -8.8 180 25-234 348-544 (567)
120 1dce_A Protein (RAB geranylger 98.9 4.7E-12 1.6E-16 126.6 -12.6 65 294-367 476-543 (567)
121 2wfh_A SLIT homolog 2 protein 98.8 2.9E-08 9.8E-13 84.9 11.1 102 223-345 31-137 (193)
122 3sb4_A Hypothetical leucine ri 98.8 5.1E-08 1.7E-12 90.6 13.4 97 243-363 225-327 (329)
123 1w8a_A SLIT protein; signaling 98.8 3.7E-08 1.3E-12 84.1 11.1 52 204-257 11-67 (192)
124 2je0_A Acidic leucine-rich nuc 98.8 2.8E-09 9.4E-14 87.1 3.7 63 296-366 80-149 (149)
125 2je0_A Acidic leucine-rich nuc 98.7 7.2E-09 2.5E-13 84.5 4.7 40 298-343 107-149 (149)
126 1a9n_A U2A', U2A'; complex (nu 98.7 1.7E-08 5.7E-13 84.9 5.8 68 295-368 78-151 (176)
127 2o6r_A Variable lymphocyte rec 98.7 1.8E-07 6.2E-12 78.5 12.2 62 300-368 72-135 (177)
128 2wfh_A SLIT homolog 2 protein 98.7 1.2E-07 4.2E-12 80.9 10.9 102 244-368 31-137 (193)
129 1w8a_A SLIT protein; signaling 98.7 1.1E-07 3.9E-12 81.0 10.5 104 200-346 28-138 (192)
130 1a9n_A U2A', U2A'; complex (nu 98.7 1.5E-08 5.1E-13 85.2 4.8 125 200-345 18-151 (176)
131 2o6r_A Variable lymphocyte rec 98.7 1.7E-07 5.9E-12 78.6 11.1 105 223-348 28-138 (177)
132 3sb4_A Hypothetical leucine ri 98.7 7.1E-08 2.4E-12 89.7 9.6 102 123-233 25-134 (329)
133 4fdw_A Leucine rich hypothetic 98.5 4.4E-06 1.5E-10 79.7 18.9 140 223-386 248-395 (401)
134 4b8c_D Glucose-repressible alc 98.5 1E-07 3.4E-12 98.2 7.9 66 294-367 260-326 (727)
135 4b8c_D Glucose-repressible alc 98.5 4.6E-08 1.6E-12 100.7 5.0 101 200-318 223-330 (727)
136 4fdw_A Leucine rich hypothetic 98.4 3.2E-05 1.1E-09 73.7 21.3 229 124-396 136-380 (401)
137 3g39_A Variable lymphocyte rec 98.4 9.7E-07 3.3E-11 73.6 9.2 40 300-345 74-113 (170)
138 2r9u_A Variable lymphocyte rec 98.4 1.1E-06 3.8E-11 73.6 9.6 40 300-345 77-116 (174)
139 4fs7_A Uncharacterized protein 98.4 3.5E-05 1.2E-09 73.2 19.8 42 14-56 59-101 (394)
140 2r9u_A Variable lymphocyte rec 98.3 4.4E-06 1.5E-10 69.9 10.1 65 297-368 50-116 (174)
141 3g39_A Variable lymphocyte rec 98.2 5.6E-06 1.9E-10 68.9 10.2 68 294-368 43-113 (170)
142 1ds9_A Outer arm dynein; leuci 98.1 2.1E-08 7.3E-13 86.0 -7.4 18 302-319 113-130 (198)
143 4fs7_A Uncharacterized protein 98.1 0.00048 1.6E-08 65.3 22.0 64 294-366 309-375 (394)
144 2ifg_A High affinity nerve gro 98.0 9.9E-06 3.4E-10 75.5 8.1 85 240-345 27-114 (347)
145 2ifg_A High affinity nerve gro 98.0 2.4E-05 8.1E-10 72.9 9.3 97 248-368 12-114 (347)
146 1ds9_A Outer arm dynein; leuci 97.9 7.8E-08 2.7E-12 82.4 -8.6 66 294-368 83-151 (198)
147 3e4g_A ATP synthase subunit S, 97.8 1.3E-05 4.6E-10 66.5 3.5 34 224-257 115-152 (176)
148 2ra8_A Uncharacterized protein 97.8 1.3E-05 4.5E-10 75.1 3.7 15 303-317 278-292 (362)
149 2ra8_A Uncharacterized protein 97.7 1.9E-05 6.4E-10 74.1 4.0 128 118-254 134-289 (362)
150 3e4g_A ATP synthase subunit S, 97.7 3.1E-05 1E-09 64.3 4.8 83 148-236 61-152 (176)
151 4gt6_A Cell surface protein; l 97.5 0.014 4.9E-07 55.0 21.0 105 238-368 259-368 (394)
152 3un9_A NLR family member X1; l 97.4 1.9E-06 6.4E-11 81.4 -7.1 46 297-345 204-250 (372)
153 4h09_A Hypothetical leucine ri 97.2 0.052 1.8E-06 50.6 20.4 58 299-364 281-340 (379)
154 3un9_A NLR family member X1; l 97.1 3E-05 1E-09 73.1 -2.6 69 296-368 175-250 (372)
155 4gt6_A Cell surface protein; l 96.8 0.13 4.5E-06 48.2 19.8 58 299-365 283-342 (394)
156 3rw6_A Nuclear RNA export fact 96.3 0.0016 5.5E-08 57.9 2.8 50 296-351 188-237 (267)
157 1io0_A Tropomodulin; LRR prote 95.5 0.0014 4.7E-08 55.0 -1.6 62 299-368 88-162 (185)
158 1io0_A Tropomodulin; LRR prote 95.3 0.0012 4E-08 55.5 -2.6 45 298-345 115-162 (185)
159 3rw6_A Nuclear RNA export fact 94.4 0.015 5.1E-07 51.7 2.1 62 301-368 167-231 (267)
160 3rfe_A Platelet glycoprotein I 94.3 0.037 1.3E-06 43.2 4.1 47 292-346 19-67 (130)
161 4h09_A Hypothetical leucine ri 93.6 4.4 0.00015 37.3 21.6 59 299-365 258-318 (379)
162 3rfe_A Platelet glycoprotein I 86.7 0.85 2.9E-05 35.3 4.8 51 308-368 12-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 47.2 5 0.00017 33.4 0.6 66 299-367 93-167 (197)
164 2lz0_A Uncharacterized protein 28.7 82 0.0028 22.6 4.6 44 293-343 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=4e-24 Score=222.56 Aligned_cols=347 Identities=15% Similarity=0.138 Sum_probs=166.8
Q ss_pred hhheeeEEEEEccCCCCc-cCccc-cCCCccCcccCceeeCCCCCCCcccccccc-cCCCceEEcccccCCChh-hhh--
Q 044605 22 TEIFVIYLILVGDLTESK-EMPLR-IGKLTSLRTLTKFAVGKSNCSGLSELRSST-LLHEKLTILGLENVNVAE-DAK-- 95 (405)
Q Consensus 22 ~~~~~~L~~L~L~~~~i~-~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~-~L~~~L~l~~l~~~~~~~-~~~-- 95 (405)
+..+++|++|++++|.++ .+|.. ++++++|++|++....- .+..+..+..+. .|+ .|.+....-..... ...
T Consensus 314 ~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l-~~~~p~~l~~l~~~L~-~L~Ls~N~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF-SGELPESLTNLSASLL-TLDLSSNNFSGPILPNLCQN 391 (768)
T ss_dssp GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE-EECCCTTHHHHTTTCS-EEECCSSEEEEECCTTTTCS
T ss_pred HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc-CccccHHHHhhhcCCc-EEEccCCCcCCCcChhhhhc
Confidence 345778899999999887 78876 88889998887432211 112333344443 454 55554321000000 000
Q ss_pred -hcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCC-CCCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCC
Q 044605 96 -EGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGG-TKFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPL 172 (405)
Q Consensus 96 -~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~ 172 (405)
...+..+.-..+ .........+..+++|+.|++.+|.. ...|..+. .+++|+.|++++|.....+|. ++.+++
T Consensus 392 ~~~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 467 (768)
T 3rgz_A 392 PKNTLQELYLQNN--GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG--SLSKLRDLKLWLNMLEGEIPQELMYVKT 467 (768)
T ss_dssp TTCCCCEEECCSS--EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred ccCCccEEECCCC--ccccccCHHHhcCCCCCEEECcCCcccCcccHHHh--cCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 011111111000 00011222344455666666655442 24455444 455666666665553333442 455566
Q ss_pred ccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC---CccccCCCCCCc
Q 044605 173 LKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE---QLLVSCTTLPLL 246 (405)
Q Consensus 173 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~---~l~~~l~~l~~L 246 (405)
|++|++.++.-...++. ....+++|++|+++++ .+.+.+|. .+++|+.|++++|. .+|..+..+++|
T Consensus 468 L~~L~L~~N~l~~~~p~------~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPS------GLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp CCEEECCSSCCCSCCCG------GGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred ceEEEecCCcccCcCCH------HHhcCCCCCEEEccCC-ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence 66666655543323332 1112555555555554 23323332 34555555555543 124444455555
Q ss_pred ceEEEcCcCCccccccccccC-----------------------------------------------------------
Q 044605 247 CELEIDGFGEVAWINRPVEAG----------------------------------------------------------- 267 (405)
Q Consensus 247 ~~L~l~~~~~l~~~~~~~~~~----------------------------------------------------------- 267 (405)
+.|++++|+..+ .+|..
T Consensus 541 ~~L~Ls~N~l~g----~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 541 IWLDLNTNLFNG----TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp CEEECCSSEEES----BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CEEECCCCccCC----cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence 555555544322 11110
Q ss_pred ----------CCCCCCCC--eeecCCCCcc--------------EEecCCCCc-ccccccCCCCCccEEEEeCCccc-cc
Q 044605 268 ----------IFDSSNPG--PEKSRTEVLP--------------WEIGSPDQE-SLPEGLHKLSHITRISIVGSYLV-SF 319 (405)
Q Consensus 268 ----------~~~~l~~L--l~l~~~~~l~--------------l~i~~~~l~-~lp~~~~~l~~L~~L~l~~~~l~-~l 319 (405)
.+..++.| ++++++.... +.++.+.++ .+|..++++++|+.|++++|+++ .+
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred cceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence 11222333 4444442210 222233444 66777777777777777777766 45
Q ss_pred ccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCcchH----HHhhcCcccccccccccCeeE
Q 044605 320 PKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDLE----EKCKKDEREYCHLVADIPFVQ 392 (405)
Q Consensus 320 ~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~----~~~~~~~~~~~~~i~~i~~~~ 392 (405)
|.. +.++++|++|++++|+..+.+|....+.++....+.|+|.+= ..|..+.+++|++|+|+++..
T Consensus 697 p~~-------l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 697 PQA-------MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CGG-------GGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred ChH-------HhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 554 567777888888877766777766555566666666765431 168888999999999998753
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=7.8e-22 Score=200.06 Aligned_cols=251 Identities=15% Similarity=0.116 Sum_probs=155.0
Q ss_pred CCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCC
Q 044605 119 LKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAK 198 (405)
Q Consensus 119 l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 198 (405)
+..+++|+.|++.++....+| ++. .+++|+.|++++|. ++.+|.+ .+++|++|++.++.....+ . ..
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-~l~--~~~~L~~L~l~~n~-l~~lp~~-~l~~L~~L~l~~n~~~~~~-~-------~~ 347 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-DVP--KHFKWQSLSIIRCQ-LKQFPTL-DLPFLKSLTLTMNKGSISF-K-------KV 347 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-CCC--TTCCCSEEEEESCC-CSSCCCC-CCSSCCEEEEESCSSCEEC-C-------CC
T ss_pred cccCCCCCEEEecCccchhhh-hcc--ccccCCEEEccccc-CcccccC-CCCccceeeccCCcCccch-h-------hc
Confidence 344567777888777777777 454 67889999998888 4788877 8889999998887655544 2 23
Q ss_pred CCCcccEEeeccCcccccc--CCC---CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCC
Q 044605 199 GFPCLRELSIINCSKLKGR--LPQ---HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDS 271 (405)
Q Consensus 199 ~~~~L~~L~l~~~~~l~~~--l~~---~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 271 (405)
.+++|++|+++++ .+++. .+. .+++|+.|++++|. .++..+..+++|+.|++++|.... ..+...+..
T Consensus 348 ~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~ 422 (606)
T 3vq2_A 348 ALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR----VTEFSAFLS 422 (606)
T ss_dssp CCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES----TTTTTTTTT
T ss_pred cCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCC----ccChhhhhc
Confidence 4788888888875 33322 122 57778888887764 335566677777777777776553 333345666
Q ss_pred CCCC--eeecCCCCcc--------------EEecCCCCcc--cccccCCCCCccEEEEeCCcccccccCCCCCcccCCCC
Q 044605 272 SNPG--PEKSRTEVLP--------------WEIGSPDQES--LPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNL 333 (405)
Q Consensus 272 l~~L--l~l~~~~~l~--------------l~i~~~~l~~--lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l 333 (405)
+++| +++++|.... +.++.+.++. +|..+..+++|+.|++++|.++.++... +.++
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------~~~l 496 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV------FDTL 496 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT------TTTC
T ss_pred cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh------hccc
Confidence 6666 6666664321 2222223332 4555666666666666666666554433 3566
Q ss_pred CCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCcchHHHhhcCccccccccc-ccCeeEecceEee
Q 044605 334 TSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVA-DIPFVQLNHKLVF 399 (405)
Q Consensus 334 ~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~-~i~~~~~~~~~~~ 399 (405)
++|++|++++|...+..|.. ..+++|++|++++|. ++. . ...+.... .++.+.+.++.+.
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~-~----p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IET-S----KGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCC-E----ESCGGGSCTTCCEEECCSCCCC
T ss_pred ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-Ccc-c----CHhHhhhcccCcEEEccCCCcc
Confidence 77777777776543333443 445577777777763 221 1 11133343 4777777776654
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=1.5e-22 Score=206.34 Aligned_cols=335 Identities=14% Similarity=0.112 Sum_probs=188.8
Q ss_pred CcccccCchhhheeeEEEEEccCCCCcc------------------CccccC--CCccCcccCceeeCCCCCCCcccccc
Q 044605 13 RMETINGDFTEIFVIYLILVGDLTESKE------------------MPLRIG--KLTSLRTLTKFAVGKSNCSGLSELRS 72 (405)
Q Consensus 13 ~l~~l~~~~~~~~~~L~~L~L~~~~i~~------------------lP~~i~--~L~~L~~L~~~~~~~~~~~~~~~L~~ 72 (405)
.+..+|..+. .+++|++|+|++|.++. +|.+++ ++++|++|++..... .+..+..+++
T Consensus 194 ~l~~ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l-~~~~p~~l~~ 271 (636)
T 4eco_A 194 NITFVSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-LTKLPTFLKA 271 (636)
T ss_dssp EEEEECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT-CSSCCTTTTT
T ss_pred CCccCCHHHh-cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC-CccChHHHhc
Confidence 4445776544 57899999999999998 999999 999999998644332 2344567788
Q ss_pred cccCCCceEEcccccCCC-hhhhhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCc--ccCCCCCCC
Q 044605 73 STLLHEKLTILGLENVNV-AEDAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPA--WLGQSSFEN 149 (405)
Q Consensus 73 L~~L~~~L~l~~l~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~--~~~~~~l~~ 149 (405)
+.+|+ .|.+.....+.. ........ +..+..+++|+.|++.++....+|. ++. .+++
T Consensus 272 l~~L~-~L~Ls~n~~l~~~~lp~~~~~-----------------L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~--~l~~ 331 (636)
T 4eco_A 272 LPEMQ-LINVACNRGISGEQLKDDWQA-----------------LADAPVGEKIQIIYIGYNNLKTFPVETSLQ--KMKK 331 (636)
T ss_dssp CSSCC-EEECTTCTTSCHHHHHHHHHH-----------------HHHSGGGGTCCEEECCSSCCSSCCCHHHHT--TCTT
T ss_pred CCCCC-EEECcCCCCCccccchHHHHh-----------------hhccccCCCCCEEECCCCcCCccCchhhhc--cCCC
Confidence 88888 887765331211 00000000 1112234566667766666556666 555 5666
Q ss_pred ccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCc-ccEEeeccCccccccCCC-----CCC
Q 044605 150 LVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPC-LRELSIINCSKLKGRLPQ-----HFS 223 (405)
Q Consensus 150 L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~l~~-----~~~ 223 (405)
|+.|++++|.....+|.++.+++|++|++.++. +..++. ....+++ |++|+++++ .++ .+|. .++
T Consensus 332 L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~------~l~~l~~~L~~L~Ls~N-~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 332 LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPA------NFCGFTEQVENLSFAHN-KLK-YIPNIFDAKSVS 402 (636)
T ss_dssp CCEEECCSCCCEEECCCCEEEEEESEEECCSSE-EEECCT------TSEEECTTCCEEECCSS-CCS-SCCSCCCTTCSS
T ss_pred CCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-cccccH------hhhhhcccCcEEEccCC-cCc-ccchhhhhcccC
Confidence 777777666522256655566666666666543 334433 1112444 555555553 233 2332 122
Q ss_pred cccEEEEeccCC---ccccCC-------CCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCC--------
Q 044605 224 SLERIVIMSCEQ---LLVSCT-------TLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEV-------- 283 (405)
Q Consensus 224 ~L~~L~l~~c~~---l~~~l~-------~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~-------- 283 (405)
+|+.|++++|.- .|..++ .+++|++|++++|... .++...+..++.| ++++++..
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-----~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-----KFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-----SCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-----cCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence 455555554431 123333 3445555555554332 2233222233333 33333211
Q ss_pred ------------cc-EEecCCCCcccccccC--CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeec-----
Q 044605 284 ------------LP-WEIGSPDQESLPEGLH--KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSR----- 343 (405)
Q Consensus 284 ------------l~-l~i~~~~l~~lp~~~~--~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~----- 343 (405)
++ +.++.+.++.+|..+. .+++|+.|++++|.++.+|.. +.++++|++|++++
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~-------~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ-------PLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCG-------GGGCSSCCEEECCSCBCTT
T ss_pred ccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChh-------hhcCCCCCEEECCCCcccc
Confidence 11 2223335667777776 888888888888888777765 56788888888843
Q ss_pred -CCCCcccCCC-CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEe
Q 044605 344 -CPILKSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLV 398 (405)
Q Consensus 344 -c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 398 (405)
|...+.+|.. ..+++|++|++++|.- ...+ +.+. +.++.+.+.++.+
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l--~~ip----~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI--RKVN----EKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC--CBCC----SCCC--TTCCEEECCSCTT
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcC--CccC----HhHh--CcCCEEECcCCCC
Confidence 4445566655 4556888888888743 1111 1111 6777777777744
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=2.1e-21 Score=202.33 Aligned_cols=323 Identities=14% Similarity=0.106 Sum_probs=187.6
Q ss_pred cccCchhhheeeEEEEEccCCCCcc------------------CccccC--CCccCcccCceeeCCCCCCCccccccccc
Q 044605 16 TINGDFTEIFVIYLILVGDLTESKE------------------MPLRIG--KLTSLRTLTKFAVGKSNCSGLSELRSSTL 75 (405)
Q Consensus 16 ~l~~~~~~~~~~L~~L~L~~~~i~~------------------lP~~i~--~L~~L~~L~~~~~~~~~~~~~~~L~~L~~ 75 (405)
.+|..+. .+++|++|+|++|.++. +|.+++ ++++|++|++..... .+..+..++++.+
T Consensus 439 ~IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 439 FISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPE 516 (876)
T ss_dssp EECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSS
T ss_pred chhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccChHHHhCCCC
Confidence 3766544 57899999999999998 999998 999999998644332 3345567888888
Q ss_pred CCCceEEcccccCCC-hhhhhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCc--ccCCCCCCCccE
Q 044605 76 LHEKLTILGLENVNV-AEDAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPA--WLGQSSFENLVV 152 (405)
Q Consensus 76 L~~~L~l~~l~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~--~~~~~~l~~L~~ 152 (405)
|+ .|.+.....+.. .... ........+..+++|+.|++.+|....+|. ++. .+++|+.
T Consensus 517 L~-~L~Ls~N~~lsg~~iP~----------------~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~--~L~~L~~ 577 (876)
T 4ecn_A 517 LQ-SLNIACNRGISAAQLKA----------------DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ--KMVKLGL 577 (876)
T ss_dssp CC-EEECTTCTTSCHHHHHH----------------HHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHT--TCTTCCE
T ss_pred CC-EEECcCCCCcccccchH----------------HHHhhhhcccccCCccEEEeeCCcCCccCChhhhh--cCCCCCE
Confidence 88 888865331211 0000 011111133445566666666665555665 454 5666666
Q ss_pred EEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCc-ccEEeeccCccccccCCC-----------
Q 044605 153 LRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPC-LRELSIINCSKLKGRLPQ----------- 220 (405)
Q Consensus 153 L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~l~~----------- 220 (405)
|++++|. ++.+|.++.+++|+.|++.++. +..++. ....+++ |++|+++++. +. .+|.
T Consensus 578 L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~------~l~~l~~~L~~L~Ls~N~-L~-~lp~~~~~~~~~~L~ 647 (876)
T 4ecn_A 578 LDCVHNK-VRHLEAFGTNVKLTDLKLDYNQ-IEEIPE------DFCAFTDQVEGLGFSHNK-LK-YIPNIFNAKSVYVMG 647 (876)
T ss_dssp EECTTSC-CCBCCCCCTTSEESEEECCSSC-CSCCCT------TSCEECTTCCEEECCSSC-CC-SCCSCCCTTCSSCEE
T ss_pred EECCCCC-cccchhhcCCCcceEEECcCCc-cccchH------HHhhccccCCEEECcCCC-CC-cCchhhhccccCCCC
Confidence 6666655 3455556666666666665543 223332 0112344 5555554432 22 2332
Q ss_pred -----------------------CCCcccEEEEeccC--CccccC-CCCCCcceEEEcCcCCccccccccccCCCCCC--
Q 044605 221 -----------------------HFSSLERIVIMSCE--QLLVSC-TTLPLLCELEIDGFGEVAWINRPVEAGIFDSS-- 272 (405)
Q Consensus 221 -----------------------~~~~L~~L~l~~c~--~l~~~l-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l-- 272 (405)
..++|+.|++++|. .+|..+ ..+++|+.|++++|... .++...+...
T Consensus 648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-----~ip~~~~~~~~~ 722 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-----SIPENSLKPKDG 722 (876)
T ss_dssp EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-----CCCTTSSSCTTS
T ss_pred EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-----ccChHHhccccc
Confidence 12245555554432 222222 23555666666555332 3343333221
Q ss_pred -----CCC--eeecCCCCccEEecCCCCcccccccC--CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeec
Q 044605 273 -----NPG--PEKSRTEVLPWEIGSPDQESLPEGLH--KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSR 343 (405)
Q Consensus 273 -----~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~--~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~ 343 (405)
++| |++++| +++.+|..+. .+++|+.|++++|.++.+|.. +.++++|+.|++++
T Consensus 723 ~l~nl~~L~~L~Ls~N----------~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~-------l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFN----------KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ-------PLNSSQLKAFGIRH 785 (876)
T ss_dssp CCTTGGGCCEEECCSS----------CCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCG-------GGGCTTCCEEECCC
T ss_pred cccccCCccEEECCCC----------CCccchHHhhhccCCCcCEEEeCCCCCCccchh-------hhcCCCCCEEECCC
Confidence 134 455444 5667887776 888888888888888887766 56788888888876
Q ss_pred ------CCCCcccCCC-CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEee
Q 044605 344 ------CPILKSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVF 399 (405)
Q Consensus 344 ------c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 399 (405)
|...+.+|.. ..+++|++|++++|.- ...+ ..+. +.++.+.+.++.+.
T Consensus 786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L--~~Ip----~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI--RKVD----EKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC--CBCC----SCCC--SSSCEEECCSCTTC
T ss_pred CCCcccccccccChHHHhcCCCCCEEECCCCCC--CccC----Hhhc--CCCCEEECCCCCCC
Confidence 4445566655 4567888888888853 1111 1111 57788888777553
No 5
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=3.1e-21 Score=194.12 Aligned_cols=224 Identities=17% Similarity=0.152 Sum_probs=124.1
Q ss_pred CCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCC
Q 044605 119 LKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAK 198 (405)
Q Consensus 119 l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 198 (405)
+..+++|+.|++.++....+|.++. .+ +|+.|++++|. +..+|. ..+++|+.|++.++.....++ ..
T Consensus 278 ~~~l~~L~~L~l~~~~l~~l~~~~~--~~-~L~~L~l~~n~-~~~l~~-~~l~~L~~L~l~~n~~~~~~~--------~~ 344 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIERVKDFSY--NF-GWQHLELVNCK-FGQFPT-LKLKSLKRLTFTSNKGGNAFS--------EV 344 (570)
T ss_dssp TGGGTTCSEEEEESCEECSCCBCCS--CC-CCSEEEEESCB-CSSCCB-CBCSSCCEEEEESCBSCCBCC--------CC
T ss_pred hcCcCcccEEEecCccchhhhhhhc--cC-CccEEeeccCc-ccccCc-ccccccCEEeCcCCccccccc--------cc
Confidence 3446778888888777667777776 55 88888888876 456654 567777777777654332221 23
Q ss_pred CCCcccEEeeccCccccccC--C---CCCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCC
Q 044605 199 GFPCLRELSIINCSKLKGRL--P---QHFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDS 271 (405)
Q Consensus 199 ~~~~L~~L~l~~~~~l~~~l--~---~~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 271 (405)
.+++|++|+++++. +.+.. + ..+++|+.|++++|. .++..+..+++|++|++++|.... ..+...+..
T Consensus 345 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~ 419 (570)
T 2z63_A 345 DLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ----MSEFSVFLS 419 (570)
T ss_dssp BCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES----CTTSCTTTT
T ss_pred cCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccc----ccchhhhhc
Confidence 47777777777653 32111 1 146677777776654 223335566666666666664433 223334555
Q ss_pred CCCC--eeecCCCCcc--------------EEecCCCCc--ccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCC
Q 044605 272 SNPG--PEKSRTEVLP--------------WEIGSPDQE--SLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNL 333 (405)
Q Consensus 272 l~~L--l~l~~~~~l~--------------l~i~~~~l~--~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l 333 (405)
+++| +++++|.... +.++.+.+. .+|..+..+++|+.|++++|.++.++... +.++
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l 493 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA------FNSL 493 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT------TTTC
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh------hhcc
Confidence 5555 5555553221 111111222 34555555666666666665555543222 3555
Q ss_pred CCcCEEeeecCCCCcccCCC--CCcCCccEEeecCC
Q 044605 334 TSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLC 367 (405)
Q Consensus 334 ~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c 367 (405)
++|++|++++|. ++.++.. ..+++|++|+++++
T Consensus 494 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 494 SSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCC
Confidence 666666666653 3334322 33456666666654
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=5.9e-21 Score=193.57 Aligned_cols=218 Identities=19% Similarity=0.180 Sum_probs=108.0
Q ss_pred CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcC-C-CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605 122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSL-P-SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG 199 (405)
Q Consensus 122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l-~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 199 (405)
+++|+.|++.++....+|.++. .+++|+.|++++|. +..+ | .++.+++|++|++.++.....++. .....
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~--~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-----~~~~~ 348 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLV--GLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGT-----GCLEN 348 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCC--SCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCS-----STTTT
T ss_pred ccCCCEEeccCCccCCCChhhc--ccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccch-----hhhhc
Confidence 4445555555544444444443 44555555555444 2222 1 244455555555544432222221 11223
Q ss_pred CCcccEEeeccCccccccC--C---CCCCcccEEEEeccCC---ccccCCCCCCcceEEEcCcCCccccccccccCCCCC
Q 044605 200 FPCLRELSIINCSKLKGRL--P---QHFSSLERIVIMSCEQ---LLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDS 271 (405)
Q Consensus 200 ~~~L~~L~l~~~~~l~~~l--~---~~~~~L~~L~l~~c~~---l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 271 (405)
+++|++|+++++. +.+.. + ..+++|+.|++++|.- .+..+..+++|+.|++++|.... ..+...+..
T Consensus 349 l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~ 423 (606)
T 3t6q_A 349 LENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV----KDAQSPFQN 423 (606)
T ss_dssp CTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC----CTTCCTTTT
T ss_pred cCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC----cccchhhhC
Confidence 5666666665542 22111 1 1456666666665531 13455556666666666665443 333334555
Q ss_pred CCCC--eeecCCCCccEEecCCCCcc-cccccCCCCCccEEEEeCCcccc--cccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605 272 SNPG--PEKSRTEVLPWEIGSPDQES-LPEGLHKLSHITRISIVGSYLVS--FPKGGLESLSFVRNLTSLERLELSRCPI 346 (405)
Q Consensus 272 l~~L--l~l~~~~~l~l~i~~~~l~~-lp~~~~~l~~L~~L~l~~~~l~~--l~~~~~~~l~~l~~l~~L~~L~l~~c~~ 346 (405)
+++| +++++| .+.. .|..+..+++|+.|++++|.++. ++.... +..+++|++|++++|..
T Consensus 424 l~~L~~L~l~~n----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 424 LHLLKVLNLSHS----------LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS-----LQTLGRLEILVLSFCDL 488 (606)
T ss_dssp CTTCCEEECTTC----------CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG-----GGGCTTCCEEECTTSCC
T ss_pred cccCCEEECCCC----------ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchh-----hccCCCccEEECCCCcc
Confidence 5555 666555 2232 34456667777777777766654 222111 35566677777776643
Q ss_pred CcccCCC-CCcCCccEEeecCC
Q 044605 347 LKSFPEN-GLLPSVVYLSIYLC 367 (405)
Q Consensus 347 l~~l~~~-~~~~~L~~L~i~~c 367 (405)
....|.. ..+++|++|++++|
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSS
T ss_pred CccChhhhccccCCCEEECCCC
Confidence 3332333 44456777777666
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=2e-22 Score=209.71 Aligned_cols=252 Identities=17% Similarity=0.127 Sum_probs=154.8
Q ss_pred CCCccEEEEEeeCCC-CCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605 122 HYGLKELKVQNYGGT-KFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG 199 (405)
Q Consensus 122 ~~~L~~L~l~~~~~~-~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 199 (405)
+++|+.|++.+|... .+|.++. .+++|+.|++++|.....+|. ++.+++|++|++.++.....++. ....
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------~~~~ 464 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLS--NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ------ELMY 464 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG------GGGG
T ss_pred cCCccEEECCCCccccccCHHHh--cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH------HHcC
Confidence 566777777766543 5666666 677888888877763334443 67788888888877754444443 1223
Q ss_pred CCcccEEeeccCccccccCCC---CCCcccEEEEeccC---CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCC
Q 044605 200 FPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE---QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSN 273 (405)
Q Consensus 200 ~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~---~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~ 273 (405)
+++|++|+++++ .+.+.+|. .+++|+.|++++|. .+|..+..+++|++|++++|...+ .+| ..+..++
T Consensus 465 l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p-~~l~~l~ 538 (768)
T 3rgz_A 465 VKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG----NIP-AELGDCR 538 (768)
T ss_dssp CTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE----ECC-GGGGGCT
T ss_pred CCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC----cCC-HHHcCCC
Confidence 788899998886 45545564 57888999998875 347778888999999999987765 444 3666777
Q ss_pred CC--eeecCCCCcc-----------------------EEecC-------------------------------------C
Q 044605 274 PG--PEKSRTEVLP-----------------------WEIGS-------------------------------------P 291 (405)
Q Consensus 274 ~L--l~l~~~~~l~-----------------------l~i~~-------------------------------------~ 291 (405)
+| +++++|.... ..+.. +
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 77 7776663221 00000 0
Q ss_pred CCc-ccccccCCCCCccEEEEeCCccc-ccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCc
Q 044605 292 DQE-SLPEGLHKLSHITRISIVGSYLV-SFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCP 368 (405)
Q Consensus 292 ~l~-~lp~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~ 368 (405)
.++ .+|..+..+++|+.|++++|+++ .+|.. +++++.|+.|++++|...+.+|.. ..+++|++|+++++.
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~-------l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-------IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG-------GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHH-------HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 000 12334445666677777766665 45544 466666777777766555566655 445567777776653
Q ss_pred chHHHhhcCcccccccccccCeeEecceEee
Q 044605 369 DLEEKCKKDEREYCHLVADIPFVQLNHKLVF 399 (405)
Q Consensus 369 ~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 399 (405)
-- ....+.+..+..++.+.+..+.+.
T Consensus 692 l~-----g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 692 LD-----GRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CE-----ECCCGGGGGCCCCSEEECCSSEEE
T ss_pred cc-----CcCChHHhCCCCCCEEECcCCccc
Confidence 11 111223445566666666666554
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=4.6e-21 Score=187.52 Aligned_cols=322 Identities=14% Similarity=0.096 Sum_probs=185.8
Q ss_pred cccccCchhhheeeEEEEEccCCCCccC-ccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChh
Q 044605 14 METINGDFTEIFVIYLILVGDLTESKEM-PLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAE 92 (405)
Q Consensus 14 l~~l~~~~~~~~~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~ 92 (405)
+..+|. ..+++++||+++|.++.+ |..++++++|++|++.............+..+.+|+ +|++.... +....
T Consensus 22 l~~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~-~L~Ls~n~-l~~~~ 95 (455)
T 3v47_A 22 LHQVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI-ILKLDYNQ-FLQLE 95 (455)
T ss_dssp CSSCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCC-EEECTTCT-TCEEC
T ss_pred cccCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCC-EEeCCCCc-cCccC
Confidence 455655 246899999999999977 667999999999985443221112234466677777 77776532 11111
Q ss_pred hhhhcccccccCC-hhhHHHHHHHhc--cCCCCCCccEEEEEeeCCCCC-Ccc-cCCCCCCCccEEEEEcCCCCCcC-CC
Q 044605 93 DAKEGNRTTSSDS-REVAEIQTRVLE--MLKPHYGLKELKVQNYGGTKF-PAW-LGQSSFENLVVLRFRNCNQCTSL-PS 166 (405)
Q Consensus 93 ~~~~~~l~~l~~~-~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~l-p~~-~~~~~l~~L~~L~l~~~~~~~~l-~~ 166 (405)
......+..++.. ...+......+. .+..+++|+.|++.++....+ |.. +. .+++|+.|++++|. +..+ +.
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~ 172 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL--NMRRFHVLDLTFNK-VKSICEE 172 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG--GCTTCCEEECTTCC-BSCCCTT
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccC--CCCcccEEeCCCCc-ccccChh
Confidence 1112222222220 000011111111 255566666666666554433 333 33 45666666666655 2222 11
Q ss_pred -CCCC--CCccEEeecCCCCCeeeCC--CCC-CCCCCCCCCcccEEeeccCccccccCCC--------------------
Q 044605 167 -VGHL--PLLKNLVIKGMGRMAKAGT--TGG-DQQAAKGFPCLRELSIINCSKLKGRLPQ-------------------- 220 (405)
Q Consensus 167 -l~~l--~~L~~L~l~~~~~l~~~~~--~~~-~~~~~~~~~~L~~L~l~~~~~l~~~l~~-------------------- 220 (405)
+..+ ++|+.|++.++. +..++. ++. .......+++|++|+++++. +.+..|.
T Consensus 173 ~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 173 DLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhccccccceeeEeecccc
Confidence 2222 344445444432 111111 000 00001234567777776652 1111110
Q ss_pred ----------------------CCCcccEEEEeccCC---ccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC
Q 044605 221 ----------------------HFSSLERIVIMSCEQ---LLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG 275 (405)
Q Consensus 221 ----------------------~~~~L~~L~l~~c~~---l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L 275 (405)
..++|+.|+++++.- .+..+..+++|++|++++|... .++...+..+++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L 325 (455)
T 3v47_A 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-----KIDDNAFWGLTHL 325 (455)
T ss_dssp TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-----EECTTTTTTCTTC
T ss_pred ccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc-----ccChhHhcCcccC
Confidence 135778888877642 2556777888888888888655 4455577777788
Q ss_pred --eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCC
Q 044605 276 --PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPE 352 (405)
Q Consensus 276 --l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~ 352 (405)
|++++| .++.+ |..+.++++|+.|++++|+++.++... +.++++|++|++++| .++.+|.
T Consensus 326 ~~L~Ls~N----------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 326 LKLNLSQN----------FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS------FLGLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp CEEECCSS----------CCCEECGGGGTTCTTCCEEECCSSCCCEECTTT------TTTCTTCCEEECCSS-CCSCCCT
T ss_pred CEEECCCC----------ccCCcChhHhcCcccCCEEECCCCcccccChhh------ccccccccEEECCCC-ccccCCH
Confidence 888877 34444 567889999999999999988875544 478889999999986 4666765
Q ss_pred C--CCcCCccEEeecCCc
Q 044605 353 N--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 353 ~--~~~~~L~~L~i~~c~ 368 (405)
. ..+++|++|+++++|
T Consensus 389 ~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 389 GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred hHhccCCcccEEEccCCC
Confidence 4 456799999998764
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=1.6e-20 Score=180.07 Aligned_cols=208 Identities=11% Similarity=0.022 Sum_probs=134.4
Q ss_pred CCCCccEEEEEeeCCCCCC-cccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605 121 PHYGLKELKVQNYGGTKFP-AWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG 199 (405)
Q Consensus 121 ~~~~L~~L~l~~~~~~~lp-~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 199 (405)
.+++|+.|++.++....++ ..+. .+++|+.|++++|. ++.+ +++.+++|+.|++.++ .+..++.
T Consensus 139 ~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~-l~~~-~~~~l~~L~~L~l~~n-~l~~~~~---------- 203 (390)
T 3o6n_A 139 NTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNR-LTHV-DLSLIPSLFHANVSYN-LLSTLAI---------- 203 (390)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTS--SCTTCCEEECCSSC-CSBC-CGGGCTTCSEEECCSS-CCSEEEC----------
T ss_pred CCCCCcEEECCCCccCccChhhcc--CCCCCCEEECCCCc-CCcc-ccccccccceeecccc-cccccCC----------
Confidence 3455555555554433332 2232 44555555555544 3333 2344555555555543 2233322
Q ss_pred CCcccEEeeccCccccccCCCCCCcccEEEEeccCCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--e
Q 044605 200 FPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--P 276 (405)
Q Consensus 200 ~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l 276 (405)
.++|++|+++++ .+...-...+++|+.|+++++.-- ...+..+++|++|++++|... .+....+..+++| +
T Consensus 204 ~~~L~~L~l~~n-~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 204 PIAVEELDASHN-SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-----KIMYHPFVKMQRLERL 277 (390)
T ss_dssp CSSCSEEECCSS-CCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC-----EEESGGGTTCSSCCEE
T ss_pred CCcceEEECCCC-eeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCC-----CcChhHccccccCCEE
Confidence 457777777775 333222235678888888876522 356677889999999988655 3445577777788 8
Q ss_pred eecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCc
Q 044605 277 EKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLL 356 (405)
Q Consensus 277 ~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~ 356 (405)
+++++ .++.+|..+..+++|+.|++++|.++.+|.. +..+++|++|++++|+ ++.++. ..+
T Consensus 278 ~L~~n----------~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~l~~L~~L~L~~N~-i~~~~~-~~~ 338 (390)
T 3o6n_A 278 YISNN----------RLVALNLYGQPIPTLKVLDLSHNHLLHVERN-------QPQFDRLENLYLDHNS-IVTLKL-STH 338 (390)
T ss_dssp ECCSS----------CCCEEECSSSCCTTCCEEECCSSCCCCCGGG-------HHHHTTCSEEECCSSC-CCCCCC-CTT
T ss_pred ECCCC----------cCcccCcccCCCCCCCEEECCCCcceecCcc-------ccccCcCCEEECCCCc-cceeCc-hhh
Confidence 88777 5567777778899999999999999888765 5678899999999875 566663 445
Q ss_pred CCccEEeecCCc
Q 044605 357 PSVVYLSIYLCP 368 (405)
Q Consensus 357 ~~L~~L~i~~c~ 368 (405)
++|++|+++++|
T Consensus 339 ~~L~~L~l~~N~ 350 (390)
T 3o6n_A 339 HTLKNLTLSHND 350 (390)
T ss_dssp CCCSEEECCSSC
T ss_pred ccCCEEEcCCCC
Confidence 699999999976
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=3.4e-20 Score=174.88 Aligned_cols=299 Identities=13% Similarity=0.134 Sum_probs=212.0
Q ss_pred heeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhccccccc
Q 044605 24 IFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSS 103 (405)
Q Consensus 24 ~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~ 103 (405)
.++++++|+++++.++.+|. ++.+++|++|++... ....+..+..+.+|+ .|.+.... +..
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n---~i~~~~~~~~l~~L~-~L~L~~n~-i~~------------- 102 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN---QITDISPLSNLVKLT-NLYIGTNK-ITD------------- 102 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSS---CCCCCGGGTTCTTCC-EEECCSSC-CCC-------------
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCC---ccccchhhhcCCcCC-EEEccCCc-ccC-------------
Confidence 46789999999999998874 889999999975333 222333466777777 77775432 111
Q ss_pred CChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCC
Q 044605 104 DSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGR 183 (405)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 183 (405)
+..+..+++|+.|++.++....++. +. .+++|+.|++++|.....++.+..+++|++|++.++.
T Consensus 103 ------------~~~~~~l~~L~~L~l~~n~i~~~~~-~~--~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~- 166 (347)
T 4fmz_A 103 ------------ISALQNLTNLRELYLNEDNISDISP-LA--NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK- 166 (347)
T ss_dssp ------------CGGGTTCTTCSEEECTTSCCCCCGG-GT--TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-
T ss_pred ------------chHHcCCCcCCEEECcCCcccCchh-hc--cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-
Confidence 1235668889999999888777765 44 7899999999999878888888899999999998864
Q ss_pred CeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC--CCCCcccEEEEeccCCc-cccCCCCCCcceEEEcCcCCcccc
Q 044605 184 MAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP--QHFSSLERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAWI 260 (405)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~--~~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~~ 260 (405)
+..++. ...+++|++|+++++ .+.+ ++ ..+++|+.++++++.-. ...+..+++|++|++++|....
T Consensus 167 ~~~~~~-------~~~l~~L~~L~l~~n-~l~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~-- 235 (347)
T 4fmz_A 167 VKDVTP-------IANLTDLYSLSLNYN-QIED-ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD-- 235 (347)
T ss_dssp CCCCGG-------GGGCTTCSEEECTTS-CCCC-CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--
T ss_pred cCCchh-------hccCCCCCEEEccCC-cccc-cccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCC--
Confidence 333332 334889999999886 3442 33 36788999999886522 1236778999999999986553
Q ss_pred ccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCE
Q 044605 261 NRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLER 338 (405)
Q Consensus 261 ~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~ 338 (405)
++. +..+++| +++++| .++.++ .+..+++|+.|++++|.++.++. +..+++|++
T Consensus 236 ---~~~--~~~l~~L~~L~l~~n----------~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~--------~~~l~~L~~ 291 (347)
T 4fmz_A 236 ---LSP--LANLSQLTWLEIGTN----------QISDIN-AVKDLTKLKMLNVGSNQISDISV--------LNNLSQLNS 291 (347)
T ss_dssp ---CGG--GTTCTTCCEEECCSS----------CCCCCG-GGTTCTTCCEEECCSSCCCCCGG--------GGGCTTCSE
T ss_pred ---Ccc--hhcCCCCCEEECCCC----------ccCCCh-hHhcCCCcCEEEccCCccCCChh--------hcCCCCCCE
Confidence 232 6677777 788777 334443 57789999999999988887742 467889999
Q ss_pred EeeecCCCCcccCCC-CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEee
Q 044605 339 LELSRCPILKSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVF 399 (405)
Q Consensus 339 L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 399 (405)
|++++|......+.. ..+++|++|++++|+ +... ..+..+++++.+.+.++.|.
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~------~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI------RPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCC------GGGGGCTTCSEESSSCC---
T ss_pred EECcCCcCCCcChhHhhccccCCEEEccCCc-cccc------cChhhhhccceeehhhhccc
Confidence 999998654343333 445689999999986 3221 12556788888888888765
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=1.1e-20 Score=191.50 Aligned_cols=334 Identities=17% Similarity=0.161 Sum_probs=168.5
Q ss_pred cccccCchhhheeeEEEEEccCCCCccC-ccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChh
Q 044605 14 METINGDFTEIFVIYLILVGDLTESKEM-PLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAE 92 (405)
Q Consensus 14 l~~l~~~~~~~~~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~ 92 (405)
+.++|.++. ..+++||+++|.++.+ |..|+++++|++|++....- .......+.++.+|+ .|.+.... +....
T Consensus 24 l~~iP~~l~---~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~-~L~Ls~n~-l~~~~ 97 (606)
T 3t6q_A 24 LNEIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI-YWIHEDTFQSQHRLD-TLVLTANP-LIFMA 97 (606)
T ss_dssp CSSCCTTSC---TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC-CEECTTTTTTCTTCC-EEECTTCC-CSEEC
T ss_pred cccCcCCCC---CcCcEEEccCCccCcCChhHhccCccceEEECCCCcc-ceeChhhccCccccC-eeeCCCCc-ccccC
Confidence 456666543 4678888888888876 45688888888886433211 112233455566666 66665422 11111
Q ss_pred hhhhcccccccCCh-hhHHHHHHHhccCCCCCCccEEEEEeeCCCCC--CcccCCCCCCCccEEEEEcCCCCCcCCC--C
Q 044605 93 DAKEGNRTTSSDSR-EVAEIQTRVLEMLKPHYGLKELKVQNYGGTKF--PAWLGQSSFENLVVLRFRNCNQCTSLPS--V 167 (405)
Q Consensus 93 ~~~~~~l~~l~~~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l--p~~~~~~~l~~L~~L~l~~~~~~~~l~~--l 167 (405)
......+..++... ..+.........+..+++|+.|++.++....+ |.+. .+++|+.|++++|. ++.++. +
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~-l~~~~~~~~ 173 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF---PTEKLKVLDFQNNA-IHYLSKEDM 173 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC---CCTTCCEEECCSSC-CCEECHHHH
T ss_pred hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccccc---CCcccCEEEcccCc-ccccChhhh
Confidence 11222333333310 00111111123466778888888888766554 3332 37788888887776 444432 5
Q ss_pred CCCCCcc--EEeecCCCCCeeeCC-CCC----------------------------------------------------
Q 044605 168 GHLPLLK--NLVIKGMGRMAKAGT-TGG---------------------------------------------------- 192 (405)
Q Consensus 168 ~~l~~L~--~L~l~~~~~l~~~~~-~~~---------------------------------------------------- 192 (405)
+.+++|+ .|++.++.-....+. +..
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~ 253 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred hhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhc
Confidence 5566666 555555432111111 100
Q ss_pred ----------------CCCCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC--Cc-cccCCCCCCcceEE
Q 044605 193 ----------------DQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QL-LVSCTTLPLLCELE 250 (405)
Q Consensus 193 ----------------~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~ 250 (405)
.......+++|++|+++++ .++ .+|. .+++|++|++++|. .+ +..+..+++|++|+
T Consensus 254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred CceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence 0011223556666666654 333 3443 34566666666553 11 33455566666666
Q ss_pred EcCcCCccccccccccCCCCCCCCC--eeecCCCCcc----------------EEecCCCCccc-ccccCCCCCccEEEE
Q 044605 251 IDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLP----------------WEIGSPDQESL-PEGLHKLSHITRISI 311 (405)
Q Consensus 251 l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~----------------l~i~~~~l~~l-p~~~~~l~~L~~L~l 311 (405)
+++|.... .++...+..+++| ++++++.... +.++.+.+..+ |..+..+++|+.|++
T Consensus 332 l~~n~~~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 332 IKGNTKRL----ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp CCSCSSCC----BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred CCCCCccc----ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 66665443 4455555666666 6655553221 12222223322 334455555555555
Q ss_pred eCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCc
Q 044605 312 VGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCP 368 (405)
Q Consensus 312 ~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~ 368 (405)
++|.++....... +.++++|++|++++|......+.. ..+++|++|++++|+
T Consensus 408 ~~n~l~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 408 AFTRLKVKDAQSP-----FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTCCEECCTTCCT-----TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred CCCcCCCcccchh-----hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 5555543321111 355666777777766543333332 344567777777664
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=2.8e-20 Score=175.47 Aligned_cols=278 Identities=14% Similarity=0.084 Sum_probs=206.3
Q ss_pred hhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhccccc
Q 044605 22 TEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTT 101 (405)
Q Consensus 22 ~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~ 101 (405)
...+++|++|++++|.++.+|. ++++++|++|++... ....+..+..+.+|+ +|.+.+.. +...
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n---~i~~~~~~~~l~~L~-~L~l~~n~-i~~~---------- 125 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN---KITDISALQNLTNLR-ELYLNEDN-ISDI---------- 125 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS---CCCCCGGGTTCTTCS-EEECTTSC-CCCC----------
T ss_pred hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC---cccCchHHcCCCcCC-EEECcCCc-ccCc----------
Confidence 3457899999999999999988 999999999975433 233455677778787 77776432 1110
Q ss_pred ccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCC
Q 044605 102 SSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGM 181 (405)
Q Consensus 102 l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~ 181 (405)
..+..+++|+.|++.++.....+..+. .+++|+.|++++|. +..++.+..+++|++|++.++
T Consensus 126 ---------------~~~~~l~~L~~L~l~~n~~~~~~~~~~--~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 126 ---------------SPLANLTKMYSLNLGANHNLSDLSPLS--NMTGLNYLTVTESK-VKDVTPIANLTDLYSLSLNYN 187 (347)
T ss_dssp ---------------GGGTTCTTCCEEECTTCTTCCCCGGGT--TCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECTTS
T ss_pred ---------------hhhccCCceeEEECCCCCCcccccchh--hCCCCcEEEecCCC-cCCchhhccCCCCCEEEccCC
Confidence 115568899999999885544444455 78999999999987 667767889999999999987
Q ss_pred CCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC-CCCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCcc
Q 044605 182 GRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP-QHFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVA 258 (405)
Q Consensus 182 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~-~~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~ 258 (405)
. +..++. ...+++|+.|++.++ .+.+..+ ..+++|+.|++++|. .++. +..+++|++|++++|....
T Consensus 188 ~-l~~~~~-------~~~l~~L~~L~l~~n-~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 188 Q-IEDISP-------LASLTSLHYFTAYVN-QITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp C-CCCCGG-------GGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred c-cccccc-------ccCCCccceeecccC-CCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC
Confidence 4 444433 334899999999886 4442222 368999999999875 3333 7889999999999986542
Q ss_pred ccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCc
Q 044605 259 WINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSL 336 (405)
Q Consensus 259 ~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L 336 (405)
+ ..+..+++| +++++| .++.++ .+..+++|+.|++++|.++.++... +.++++|
T Consensus 258 -----~--~~~~~l~~L~~L~l~~n----------~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~------l~~l~~L 313 (347)
T 4fmz_A 258 -----I--NAVKDLTKLKMLNVGSN----------QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEV------IGGLTNL 313 (347)
T ss_dssp -----C--GGGTTCTTCCEEECCSS----------CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHH------HHTCTTC
T ss_pred -----C--hhHhcCCCcCEEEccCC----------ccCCCh-hhcCCCCCCEEECcCCcCCCcChhH------hhccccC
Confidence 2 356777778 888887 334554 4779999999999999888665433 4678999
Q ss_pred CEEeeecCCCCcccCCCCCcCCccEEeecCCc
Q 044605 337 ERLELSRCPILKSFPENGLLPSVVYLSIYLCP 368 (405)
Q Consensus 337 ~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 368 (405)
++|++++|+. +.++....+++|++|++++|+
T Consensus 314 ~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 314 TTLFLSQNHI-TDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp SEEECCSSSC-CCCGGGGGCTTCSEESSSCC-
T ss_pred CEEEccCCcc-ccccChhhhhccceeehhhhc
Confidence 9999999874 555445455799999999985
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2.6e-20 Score=188.43 Aligned_cols=287 Identities=10% Similarity=0.020 Sum_probs=173.5
Q ss_pred cccCchhhheeeEEEEEccCCCCccCcc-ccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhh
Q 044605 16 TINGDFTEIFVIYLILVGDLTESKEMPL-RIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDA 94 (405)
Q Consensus 16 ~l~~~~~~~~~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~ 94 (405)
.+|..++..+++|++|++++|.++.+|. .|+++.+|++|++....- .......++.+.+|+ .|.+.... +...
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~L~~n~-l~~l--- 138 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLT-VLVLERND-LSSL--- 138 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCC-EEECCSSC-CCCC---
T ss_pred CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC-CCCCHHHHcCCCCCC-EEEeeCCC-CCCC---
Confidence 3444444455566666666666555543 456666666655322111 111122234444444 44443211 0000
Q ss_pred hhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCC-cccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCc
Q 044605 95 KEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFP-AWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLL 173 (405)
Q Consensus 95 ~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp-~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L 173 (405)
....+..+++|+.|++.+|....++ .++. .+++|+.|++++|. ++.+ +++.+++|
T Consensus 139 --------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~-l~~~-~~~~l~~L 194 (597)
T 3oja_B 139 --------------------PRGIFHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNR-LTHV-DLSLIPSL 194 (597)
T ss_dssp --------------------CTTTTTTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECTTSC-CSBC-CGGGCTTC
T ss_pred --------------------CHHHhccCCCCCEEEeeCCcCCCCChhhhh--cCCcCcEEECcCCC-CCCc-Chhhhhhh
Confidence 0011234555666666655443332 2333 45566666665554 3333 24445666
Q ss_pred cEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcccEEEEeccCCc-cccCCCCCCcceEEEc
Q 044605 174 KNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQL-LVSCTTLPLLCELEID 252 (405)
Q Consensus 174 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~ 252 (405)
+.|++.++ .+..++. .++|++|+++++ .+....+...++|+.|++++|.-- +..+..+++|+.|+++
T Consensus 195 ~~L~l~~n-~l~~l~~----------~~~L~~L~ls~n-~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls 262 (597)
T 3oja_B 195 FHANVSYN-LLSTLAI----------PIAVEELDASHN-SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS 262 (597)
T ss_dssp SEEECCSS-CCSEEEC----------CTTCSEEECCSS-CCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred hhhhcccC-ccccccC----------CchhheeeccCC-cccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECC
Confidence 66666553 2333322 567778887775 343222335678999999887522 4667778999999999
Q ss_pred CcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccC
Q 044605 253 GFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFV 330 (405)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l 330 (405)
+|... .+++..+..+++| |++++| .++.+|..+..+++|+.|++++|.++.+|.. +
T Consensus 263 ~N~l~-----~~~~~~~~~l~~L~~L~Ls~N----------~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~-------~ 320 (597)
T 3oja_B 263 YNELE-----KIMYHPFVKMQRLERLYISNN----------RLVALNLYGQPIPTLKVLDLSHNHLLHVERN-------Q 320 (597)
T ss_dssp SSCCC-----EEESGGGTTCSSCCEEECTTS----------CCCEEECSSSCCTTCCEEECCSSCCCCCGGG-------H
T ss_pred CCccC-----CCCHHHhcCccCCCEEECCCC----------CCCCCCcccccCCCCcEEECCCCCCCccCcc-------c
Confidence 98765 3455577888888 888887 5567787778899999999999999988866 5
Q ss_pred CCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCc
Q 044605 331 RNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCP 368 (405)
Q Consensus 331 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 368 (405)
..+++|++|++++|. +..++. ..+++|+.|+++++|
T Consensus 321 ~~l~~L~~L~L~~N~-l~~~~~-~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 321 PQFDRLENLYLDHNS-IVTLKL-STHHTLKNLTLSHND 356 (597)
T ss_dssp HHHTTCSEEECCSSC-CCCCCC-CTTCCCSEEECCSSC
T ss_pred ccCCCCCEEECCCCC-CCCcCh-hhcCCCCEEEeeCCC
Confidence 678999999999976 555654 344699999999986
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=3e-19 Score=175.35 Aligned_cols=320 Identities=16% Similarity=0.149 Sum_probs=161.6
Q ss_pred hheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhcccccc
Q 044605 23 EIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTS 102 (405)
Q Consensus 23 ~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l 102 (405)
..+++|++||+++|.++.+|. ++++.+|++|++... ....+..++.+.+|+ .|.+.... +..... ...+..+
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n---~l~~~~~~~~l~~L~-~L~L~~n~-l~~~~~--~~~l~~L 136 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN---QIADITPLANLTNLT-GLTLFNNQ-ITDIDP--LKNLTNL 136 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS---CCCCCGGGTTCTTCC-EEECCSSC-CCCCGG--GTTCTTC
T ss_pred hhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC---ccccChhhcCCCCCC-EEECCCCC-CCCChH--HcCCCCC
Confidence 346788888888888887776 788888888864322 222223366666666 66665432 111110 1111111
Q ss_pred cCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCC
Q 044605 103 SDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMG 182 (405)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~ 182 (405)
+........... ...+..+++|+.|++.+. ...++. +. .+++|+.|++++|. +..++.+..+++|++|++.++.
T Consensus 137 ~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~-~~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 137 NRLELSSNTISD-ISALSGLTSLQQLSFGNQ-VTDLKP-LA--NLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQ 210 (466)
T ss_dssp SEEEEEEEEECC-CGGGTTCTTCSEEEEEES-CCCCGG-GT--TCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC
T ss_pred CEEECCCCccCC-ChhhccCCcccEeecCCc-ccCchh-hc--cCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCc
Confidence 110000000000 011333444444444321 111111 22 44555555555554 4444445555555555555442
Q ss_pred CCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC--CCCcccEEEEeccCCc-cccCCCCCCcceEEEcCcCCccc
Q 044605 183 RMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ--HFSSLERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAW 259 (405)
Q Consensus 183 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~--~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~ 259 (405)
+..+.. ...+++|++|+++++ .+++ ++. .+++|+.|++++|.-- ...+..+++|+.|++++|....
T Consensus 211 -l~~~~~-------~~~l~~L~~L~l~~n-~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~- 279 (466)
T 1o6v_A 211 -ISDITP-------LGILTNLDELSLNGN-QLKD-IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN- 279 (466)
T ss_dssp -CCCCGG-------GGGCTTCCEEECCSS-CCCC-CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-
T ss_pred -cccccc-------ccccCCCCEEECCCC-Cccc-chhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCc-
Confidence 221211 223566666666664 2331 221 4566777776665411 1225566777777777665432
Q ss_pred cccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcC
Q 044605 260 INRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLE 337 (405)
Q Consensus 260 ~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~ 337 (405)
++. +..+++| +++++| .++.++. +..+++|+.|++++|.++.++. +..+++|+
T Consensus 280 ----~~~--~~~l~~L~~L~L~~n----------~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~ 334 (466)
T 1o6v_A 280 ----ISP--LAGLTALTNLELNEN----------QLEDISP-ISNLKNLTYLTLYFNNISDISP--------VSSLTKLQ 334 (466)
T ss_dssp ----CGG--GTTCTTCSEEECCSS----------CCSCCGG-GGGCTTCSEEECCSSCCSCCGG--------GGGCTTCC
T ss_pred ----ccc--ccCCCccCeEEcCCC----------cccCchh-hcCCCCCCEEECcCCcCCCchh--------hccCccCC
Confidence 221 4455555 666655 3344443 5567777777777766665543 25667777
Q ss_pred EEeeecCCCCcccCCCCCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEeeC
Q 044605 338 RLELSRCPILKSFPENGLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVFD 400 (405)
Q Consensus 338 ~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 400 (405)
+|++++| .++.++....+++|++|++++|+- .... ....+..++.+.+.++.++.
T Consensus 335 ~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l-~~~~------~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 335 RLFFYNN-KVSDVSSLANLTNINWLSAGHNQI-SDLT------PLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CBCG------GGTTCTTCCEEECCCEEEEC
T ss_pred EeECCCC-ccCCchhhccCCCCCEEeCCCCcc-Cccc------hhhcCCCCCEEeccCCcccC
Confidence 7777776 344554434556777777777632 1111 13445666667777666654
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=9.7e-21 Score=197.25 Aligned_cols=319 Identities=12% Similarity=0.052 Sum_probs=209.6
Q ss_pred ccCch-hhheeeEEEEEccCCCC-ccCccccCCCccCcccCceeeCCCCC-CCcccccccc-------cCCCceEEcccc
Q 044605 17 INGDF-TEIFVIYLILVGDLTES-KEMPLRIGKLTSLRTLTKFAVGKSNC-SGLSELRSST-------LLHEKLTILGLE 86 (405)
Q Consensus 17 l~~~~-~~~~~~L~~L~L~~~~i-~~lP~~i~~L~~L~~L~~~~~~~~~~-~~~~~L~~L~-------~L~~~L~l~~l~ 86 (405)
+|..+ +..+++|++|+|++|.+ +.+|..++++++|++|++.....-.+ ..+..++.+. +|+ .|.+....
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~-~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ-IFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC-EEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc-EEEeeCCc
Confidence 55554 34678999999999975 57899999999999997543321111 2233344444 676 77765432
Q ss_pred cCCChhh-hhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCC-ccEEEEEcCCCCCcC
Q 044605 87 NVNVAED-AKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFEN-LVVLRFRNCNQCTSL 164 (405)
Q Consensus 87 ~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~-L~~L~l~~~~~~~~l 164 (405)
- ...+. .....+..+............+. .+..+++|+.|++.+|....+|.++. .+++ |+.|++++|. ++.+
T Consensus 560 L-~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~--~l~~~L~~L~Ls~N~-L~~l 634 (876)
T 4ecn_A 560 L-EEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFC--AFTDQVEGLGFSHNK-LKYI 634 (876)
T ss_dssp C-CBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSC--EECTTCCEEECCSSC-CCSC
T ss_pred C-CccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHh--hccccCCEEECcCCC-CCcC
Confidence 1 12211 12233333333110000011222 56677888888888877777787766 6777 8888888887 5566
Q ss_pred CC-CCCC--CCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC----CCCcccEEEEeccC--C
Q 044605 165 PS-VGHL--PLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ----HFSSLERIVIMSCE--Q 235 (405)
Q Consensus 165 ~~-l~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c~--~ 235 (405)
|. +..+ ++|+.|+++++.-...++.+.. .......++|++|+++++ .+. .+|. .+++|+.|++++|. .
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~-~l~~~~~~~L~~L~Ls~N-~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ 711 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISC-SMDDYKGINASTVTLSYN-EIQ-KFPTELFATGSPISTIILSNNLMTS 711 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSS-CTTTCCCCCEEEEECCSS-CCC-SCCHHHHHTTCCCSEEECCSCCCSC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchh-hhccccCCCcCEEEccCC-cCC-ccCHHHHccCCCCCEEECCCCcCCc
Confidence 65 3433 3488888887654332222000 001123458999999986 455 4664 57999999999874 3
Q ss_pred ccccCC--------CCCCcceEEEcCcCCccccccccccCCC-CCCCCC--eeecCCCCccEEecCCCCcccccccCCCC
Q 044605 236 LLVSCT--------TLPLLCELEIDGFGEVAWINRPVEAGIF-DSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLS 304 (405)
Q Consensus 236 l~~~l~--------~l~~L~~L~l~~~~~l~~~~~~~~~~~~-~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~ 304 (405)
+|..+. ++++|+.|++++|... .+|.... ..+++| |++++| .++.+|..+.+++
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-----~lp~~l~~~~l~~L~~L~Ls~N----------~L~~lp~~l~~L~ 776 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-----SLSDDFRATTLPYLSNMDVSYN----------CFSSFPTQPLNSS 776 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-----CCCGGGSTTTCTTCCEEECCSS----------CCSSCCCGGGGCT
T ss_pred cChHHhccccccccccCCccEEECCCCCCc-----cchHHhhhccCCCcCEEEeCCC----------CCCccchhhhcCC
Confidence 444332 2349999999999654 4555333 377788 888887 5567898999999
Q ss_pred CccEEEEeC------Cccc-ccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCc
Q 044605 305 HITRISIVG------SYLV-SFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCP 368 (405)
Q Consensus 305 ~L~~L~l~~------~~l~-~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 368 (405)
+|+.|++++ |++. .+|.. +.++++|++|++++|.. +.+|.. ..++|+.|++++|+
T Consensus 777 ~L~~L~Ls~N~~ls~N~l~~~ip~~-------l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 777 QLKAFGIRHQRDAEGNRILRQWPTG-------ITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNP 838 (876)
T ss_dssp TCCEEECCCCBCTTCCBCCCCCCTT-------GGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCT
T ss_pred CCCEEECCCCCCcccccccccChHH-------HhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCC
Confidence 999999976 4443 55554 68899999999999865 899876 34699999999997
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=2.7e-19 Score=176.11 Aligned_cols=293 Identities=15% Similarity=0.098 Sum_probs=206.2
Q ss_pred CcccccCchhhheeeEEEEEccCCCCccCc-cccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCCh
Q 044605 13 RMETINGDFTEIFVIYLILVGDLTESKEMP-LRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVA 91 (405)
Q Consensus 13 ~l~~l~~~~~~~~~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~ 91 (405)
.+..+|..+. +.+++|||++|.++.++ ..|+++.+|++|++....- .......+.++.+|+ .|.+.... +...
T Consensus 22 ~l~~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~-~L~L~~n~-l~~~ 95 (477)
T 2id5_A 22 RFVAVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLR-TLGLRSNR-LKLI 95 (477)
T ss_dssp CCSSCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-CEECTTTTTTCTTCC-EEECCSSC-CCSC
T ss_pred CcCcCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc-CEeChhhhhCCccCC-EEECCCCc-CCcc
Confidence 3566776653 58899999999999875 5699999999997532211 112234566666676 77775421 1110
Q ss_pred hhhhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCC-CcccCCCCCCCccEEEEEcCCCCCcCC--CCC
Q 044605 92 EDAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKF-PAWLGQSSFENLVVLRFRNCNQCTSLP--SVG 168 (405)
Q Consensus 92 ~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~ 168 (405)
....+..+++|+.|++.++....+ |..+. .+++|+.|++++|. +..++ .+.
T Consensus 96 -----------------------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~~ 149 (477)
T 2id5_A 96 -----------------------PLGVFTGLSNLTKLDISENKIVILLDYMFQ--DLYNLKSLEVGDND-LVYISHRAFS 149 (477)
T ss_dssp -----------------------CTTSSTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEEECCTT-CCEECTTSST
T ss_pred -----------------------CcccccCCCCCCEEECCCCccccCChhHcc--ccccCCEEECCCCc-cceeChhhcc
Confidence 112355678899999988776554 33444 68899999998887 55443 478
Q ss_pred CCCCccEEeecCCCCCeeeCC--CCCCCCCCCCCCcccEEeeccCccccccCC---CCCCcccEEEEeccCCc---cccC
Q 044605 169 HLPLLKNLVIKGMGRMAKAGT--TGGDQQAAKGFPCLRELSIINCSKLKGRLP---QHFSSLERIVIMSCEQL---LVSC 240 (405)
Q Consensus 169 ~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~---~~~~~L~~L~l~~c~~l---~~~l 240 (405)
.+++|++|++.++. +..++. ++ .+++|+.|++.++ .+.+..+ ..+++|+.|++++|..+ +..+
T Consensus 150 ~l~~L~~L~l~~n~-l~~~~~~~l~-------~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 220 (477)
T 2id5_A 150 GLNSLEQLTLEKCN-LTSIPTEALS-------HLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220 (477)
T ss_dssp TCTTCCEEEEESCC-CSSCCHHHHT-------TCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT
T ss_pred CCCCCCEEECCCCc-CcccChhHhc-------ccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCccc
Confidence 89999999998864 444432 33 3889999999885 3443322 26788999999987644 4444
Q ss_pred CCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccc-cccCCCCCccEEEEeCCccc
Q 044605 241 TTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLP-EGLHKLSHITRISIVGSYLV 317 (405)
Q Consensus 241 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~ 317 (405)
....+|+.|++++|... .++...+..+++| |+++++ .++.++ ..+..+++|+.|++++|+++
T Consensus 221 ~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 221 LYGLNLTSLSITHCNLT-----AVPYLAVRHLVYLRFLNLSYN----------PISTIEGSMLHELLRLQEIQLVGGQLA 285 (477)
T ss_dssp TTTCCCSEEEEESSCCC-----SCCHHHHTTCTTCCEEECCSS----------CCCEECTTSCTTCTTCCEEECCSSCCS
T ss_pred ccCccccEEECcCCccc-----ccCHHHhcCccccCeeECCCC----------cCCccChhhccccccCCEEECCCCccc
Confidence 45668999999998644 5565567777788 888877 345554 35789999999999999999
Q ss_pred ccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605 318 SFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 318 ~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 368 (405)
.++...| .++++|++|++++| .++.++.. ..+++|++|+++++|
T Consensus 286 ~~~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 286 VVEPYAF------RGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EECTTTB------TTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred eECHHHh------cCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 8865544 78899999999997 56677654 445799999999876
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=3.4e-21 Score=196.27 Aligned_cols=320 Identities=12% Similarity=0.075 Sum_probs=203.6
Q ss_pred ccCchh-hheeeEEEEEccCCCCc-cCccccCCCccCcccCceeeCCCCC-CCccccccc------ccCCCceEEccccc
Q 044605 17 INGDFT-EIFVIYLILVGDLTESK-EMPLRIGKLTSLRTLTKFAVGKSNC-SGLSELRSS------TLLHEKLTILGLEN 87 (405)
Q Consensus 17 l~~~~~-~~~~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~~~~~~~~~~-~~~~~L~~L------~~L~~~L~l~~l~~ 87 (405)
+|..+. ..+++|++|++++|.+. .+|..++++++|++|++.....-.+ ..+..++.+ .+|+ .|.+....-
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~-~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ-IIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC-EEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC-EEECCCCcC
Confidence 555543 25779999999999865 7899999999999997543321111 233445554 6677 777765322
Q ss_pred CCChhh-hhhcccccccCChh-hHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCC-ccEEEEEcCCCCCcC
Q 044605 88 VNVAED-AKEGNRTTSSDSRE-VAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFEN-LVVLRFRNCNQCTSL 164 (405)
Q Consensus 88 ~~~~~~-~~~~~l~~l~~~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~-L~~L~l~~~~~~~~l 164 (405)
. ..+. .....+..++.... .+...+.+. .+..+++|+.|++.++....+|.++. .+++ |+.|++++|. ++.+
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~--~l~~~L~~L~Ls~N~-l~~l 392 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFC--GFTEQVENLSFAHNK-LKYI 392 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSE--EECTTCCEEECCSSC-CSSC
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhh--hhcccCcEEEccCCc-Cccc
Confidence 1 2211 12233333332100 000000122 44456677777777766556777666 6777 8888888777 5566
Q ss_pred CC-CCC--CCCccEEeecCCCCCeeeCC-CCCCCCCCCCCCcccEEeeccCccccccCCC----CCCcccEEEEeccC--
Q 044605 165 PS-VGH--LPLLKNLVIKGMGRMAKAGT-TGGDQQAAKGFPCLRELSIINCSKLKGRLPQ----HFSSLERIVIMSCE-- 234 (405)
Q Consensus 165 ~~-l~~--l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c~-- 234 (405)
|. ++. +++|++|++.++.-...++. ++........+++|++|+++++ .++ .+|. .+++|+.|+++++.
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~-~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QIS-KFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccC-cCCHHHHccCCCCCEEECCCCCCC
Confidence 65 333 34788888877654333332 2200001113568899998885 455 4554 47889999998864
Q ss_pred CccccCC--------CCCCcceEEEcCcCCccccccccccCCC-CCCCCC--eeecCCCCccEEecCCCCcccccccCCC
Q 044605 235 QLLVSCT--------TLPLLCELEIDGFGEVAWINRPVEAGIF-DSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKL 303 (405)
Q Consensus 235 ~l~~~l~--------~l~~L~~L~l~~~~~l~~~~~~~~~~~~-~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l 303 (405)
.+|..+. .+++|+.|++++|... .++...+ ..+++| ++++++ .++.+|..+..+
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~~~l~~L~~L~Ls~N----------~l~~ip~~~~~l 535 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-----KLSDDFRATTLPYLVGIDLSYN----------SFSKFPTQPLNS 535 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCC-----BCCGGGSTTTCTTCCEEECCSS----------CCSSCCCGGGGC
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCC-----ccChhhhhccCCCcCEEECCCC----------CCCCcChhhhcC
Confidence 2332221 2238999999988654 4554333 377777 888877 556789999999
Q ss_pred CCccEEEEeC------Ccc-cccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCc
Q 044605 304 SHITRISIVG------SYL-VSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCP 368 (405)
Q Consensus 304 ~~L~~L~l~~------~~l-~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 368 (405)
++|+.|++++ |++ ..+|.. +.++++|++|++++|.. +.+|.. ..++|++|++++|+
T Consensus 536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~-------l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 536 STLKGFGIRNQRDAQGNRTLREWPEG-------ITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNP 598 (636)
T ss_dssp SSCCEEECCSCBCTTCCBCCCCCCTT-------GGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCT
T ss_pred CCCCEEECCCCcccccCcccccChHH-------HhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCC
Confidence 9999999964 443 356655 67899999999999865 889876 33799999999996
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=9.5e-21 Score=189.73 Aligned_cols=156 Identities=15% Similarity=0.138 Sum_probs=85.2
Q ss_pred CCcccEEEEeccCCc------cccCCCCCCcceEEEcCcCCcccccccccc--CCCCCCCCC--eeecCCCCccEEecCC
Q 044605 222 FSSLERIVIMSCEQL------LVSCTTLPLLCELEIDGFGEVAWINRPVEA--GIFDSSNPG--PEKSRTEVLPWEIGSP 291 (405)
Q Consensus 222 ~~~L~~L~l~~c~~l------~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~--~~~~~l~~L--l~l~~~~~l~l~i~~~ 291 (405)
+++|+.|++++|.-. +..+..+++|++|++++|... .++. ..+..+++| +++++|
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~~~l~~L~~L~Ls~N---------- 397 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-----SMQKTGEILLTLKNLTSLDISRN---------- 397 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-----CHHHHHHHGGGCTTCCEEECTTC----------
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCCccc-----ccccchhhhhcCCCCCEEECCCC----------
Confidence 566666666665422 122455666666666666433 1211 224445555 555555
Q ss_pred CCcccccccCCCCCccEEEEeCCcccccccCCCCCccc-----------CCCCCCcCEEeeecCCCCcccCCCCCcCCcc
Q 044605 292 DQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSF-----------VRNLTSLERLELSRCPILKSFPENGLLPSVV 360 (405)
Q Consensus 292 ~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~-----------l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~ 360 (405)
+++.+|..+..+++|+.|++++|.++.+|......+.. ..++++|++|++++| .++.+|....+++|+
T Consensus 398 ~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~ 476 (549)
T 2z81_A 398 TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLL 476 (549)
T ss_dssp CCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCC
T ss_pred CCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCcccCccCC
Confidence 45566666667777777777776666555431111100 135667777777775 455666555556777
Q ss_pred EEeecCCcchHHHhhcCcccccccccccCeeEecceEe
Q 044605 361 YLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLV 398 (405)
Q Consensus 361 ~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 398 (405)
+|+++++. ++. ...+.+....+++.+.+.++.+
T Consensus 477 ~L~Ls~N~-l~~----~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 477 VMKISRNQ-LKS----VPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp EEECCSSC-CCC----CCTTGGGGCTTCCEEECCSSCB
T ss_pred EEecCCCc-cCC----cCHHHHhcCcccCEEEecCCCc
Confidence 77777762 211 1122244566677777766655
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=6.6e-20 Score=182.45 Aligned_cols=211 Identities=17% Similarity=0.180 Sum_probs=142.2
Q ss_pred CccEEEEEeeCCC-CCCcccCC---CCCCCccEEEEEcCCCCCcCCC--CCCC---CCccEEeecCCCCCeeeCCCCCCC
Q 044605 124 GLKELKVQNYGGT-KFPAWLGQ---SSFENLVVLRFRNCNQCTSLPS--VGHL---PLLKNLVIKGMGRMAKAGTTGGDQ 194 (405)
Q Consensus 124 ~L~~L~l~~~~~~-~lp~~~~~---~~l~~L~~L~l~~~~~~~~l~~--l~~l---~~L~~L~l~~~~~l~~~~~~~~~~ 194 (405)
+|+.|++.++... .+|.++.. ..+++|+.++++++.. .+|. +..+ ++|+.|++.++. +..+..
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~----- 319 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLC----- 319 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC-CCCCCC-----
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc-cccccc-----
Confidence 4444444444322 44554410 1455556666655542 3331 1111 346666666553 221110
Q ss_pred CCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccCC-----ccccCCCCCCcceEEEcCcCCcccccccccc
Q 044605 195 QAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCEQ-----LLVSCTTLPLLCELEIDGFGEVAWINRPVEA 266 (405)
Q Consensus 195 ~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~~-----l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 266 (405)
...+++|++|+++++ .+.+.+|. .+++|+.|++++|.- ++..+..+++|++|++++|.... .++.
T Consensus 320 --~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~----~l~~ 392 (520)
T 2z7x_B 320 --PSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY----DEKK 392 (520)
T ss_dssp --CSSCCCCCEEECCSS-CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC----CGGG
T ss_pred --hhhCCcccEEEeECC-ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc----cccc
Confidence 135899999999986 45544553 688999999998752 24568889999999999997764 4777
Q ss_pred CCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecC
Q 044605 267 GIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRC 344 (405)
Q Consensus 267 ~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c 344 (405)
..+..++.| +++++|... +.+|..+. ++|+.|++++|+++.+|.. +.++++|++|++++|
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~---------~~~~~~l~--~~L~~L~Ls~N~l~~ip~~-------~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILT---------DTIFRCLP--PRIKVLDLHSNKIKSIPKQ-------VVKLEALQELNVASN 454 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCC---------GGGGGSCC--TTCCEEECCSSCCCCCCGG-------GGGCTTCCEEECCSS
T ss_pred chhccCccCCEEECcCCCCC---------cchhhhhc--ccCCEEECCCCcccccchh-------hhcCCCCCEEECCCC
Confidence 778888888 888888332 24444433 7999999999999999876 568999999999997
Q ss_pred CCCcccCCC--CCcCCccEEeecCCc
Q 044605 345 PILKSFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 345 ~~l~~l~~~--~~~~~L~~L~i~~c~ 368 (405)
.++.+|.. ..+++|++|+++++|
T Consensus 455 -~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 455 -QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -cCCccCHHHhccCCcccEEECcCCC
Confidence 56788864 445799999999876
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=1.8e-20 Score=190.05 Aligned_cols=226 Identities=13% Similarity=0.080 Sum_probs=152.1
Q ss_pred CCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcc
Q 044605 146 SFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSL 225 (405)
Q Consensus 146 ~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L 225 (405)
.+++|+.|+++++. +..+|.+..+++|++|++.+|.. ..++. . .+++|++|+++++......--..+++|
T Consensus 283 ~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-------~-~l~~L~~L~l~~n~~~~~~~~~~l~~L 352 (606)
T 3vq2_A 283 CLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-KQFPT-------L-DLPFLKSLTLTMNKGSISFKKVALPSL 352 (606)
T ss_dssp GGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-SSCCC-------C-CCSSCCEEEEESCSSCEECCCCCCTTC
T ss_pred cCCCCCEEEecCcc-chhhhhccccccCCEEEcccccC-ccccc-------C-CCCccceeeccCCcCccchhhccCCCC
Confidence 35677777777776 56677777788888888887754 54543 2 588888888888755442212368889
Q ss_pred cEEEEeccCC--c---cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCcc-------------
Q 044605 226 ERIVIMSCEQ--L---LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLP------------- 285 (405)
Q Consensus 226 ~~L~l~~c~~--l---~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~------------- 285 (405)
+.|++++|.- . +..+..+++|++|++++|... .++ ..+..+++| +++++|....
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-----IMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-----EEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-----cch-hhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 9999887652 2 455667889999999988644 344 567777788 7777663221
Q ss_pred --EEecCCCCcc-cccccCCCCCccEEEEeCCcccc--cccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCc
Q 044605 286 --WEIGSPDQES-LPEGLHKLSHITRISIVGSYLVS--FPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSV 359 (405)
Q Consensus 286 --l~i~~~~l~~-lp~~~~~l~~L~~L~l~~~~l~~--l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L 359 (405)
+.++.+.+.. .|..+.++++|+.|++++|.++. +|.. +.++++|++|++++|...+..|.. ..+++|
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-------FANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-------CTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh-------hccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 4444444443 45567777788888887777765 4443 577888999999887544443443 556788
Q ss_pred cEEeecCCcchHHHhhcCcccccccccccCeeEecceEee
Q 044605 360 VYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVF 399 (405)
Q Consensus 360 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 399 (405)
++|++++|. +.. .....+..+.+++.+.+.++++.
T Consensus 500 ~~L~Ls~N~-l~~----~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 500 QLLNMSHNN-LLF----LDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CEEECCSSC-CSC----EEGGGTTTCTTCCEEECTTSCCC
T ss_pred CEEECCCCc-CCC----cCHHHccCCCcCCEEECCCCcCc
Confidence 999998884 211 11234566788888888888765
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=7.7e-19 Score=171.66 Aligned_cols=183 Identities=19% Similarity=0.091 Sum_probs=95.2
Q ss_pred hheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhcccccc
Q 044605 23 EIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTS 102 (405)
Q Consensus 23 ~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l 102 (405)
..+++|++||+++|.++.+| +++++++|++|++....- ..+ .++.+.+|+ .|.+.... +...
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l---~~~-~~~~l~~L~-~L~Ls~N~-l~~~----------- 100 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNI---TTL-DLSQNTNLT-YLACDSNK-LTNL----------- 100 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCC---SCC-CCTTCTTCS-EEECCSSC-CSCC-----------
T ss_pred hHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcC---CeE-ccccCCCCC-EEECcCCC-Ccee-----------
Confidence 34678999999999999887 789999999997543322 222 266666676 77765422 1111
Q ss_pred cCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCC
Q 044605 103 SDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMG 182 (405)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~ 182 (405)
.+..+++|+.|++.++....+| +. .+++|+.|++++|. ++.+ +++.+++|++|++.++.
T Consensus 101 ---------------~~~~l~~L~~L~L~~N~l~~l~--~~--~l~~L~~L~l~~N~-l~~l-~l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 101 ---------------DVTPLTKLTYLNCDTNKLTKLD--VS--QNPLLTYLNCARNT-LTEI-DVSHNTQLTELDCHLNK 159 (457)
T ss_dssp ---------------CCTTCTTCCEEECCSSCCSCCC--CT--TCTTCCEEECTTSC-CSCC-CCTTCTTCCEEECTTCS
T ss_pred ---------------ecCCCCcCCEEECCCCcCCeec--CC--CCCcCCEEECCCCc-ccee-ccccCCcCCEEECCCCC
Confidence 1334555566666555444433 22 45556666665554 3333 25555555555555554
Q ss_pred CCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC-CCCCcccEEEEeccCCccccCCCCCCcceEEEcCc
Q 044605 183 RMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP-QHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGF 254 (405)
Q Consensus 183 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~-~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~ 254 (405)
.+..++ ...+++|++|+++++ .+++ +| ..+++|+.|+++++.--...+..+++|+.|++++|
T Consensus 160 ~~~~~~--------~~~l~~L~~L~ls~n-~l~~-l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 160 KITKLD--------VTPQTQLTTLDCSFN-KITE-LDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSN 222 (457)
T ss_dssp CCCCCC--------CTTCTTCCEEECCSS-CCCC-CCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSS
T ss_pred cccccc--------cccCCcCCEEECCCC-ccce-eccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCC
Confidence 333321 112445555555443 2332 22 23444455544443311112344444444444444
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=3.4e-19 Score=177.27 Aligned_cols=67 Identities=18% Similarity=0.049 Sum_probs=44.5
Q ss_pred CcccccCchhhheeeEEEEEccCCCCccCc-cccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcc
Q 044605 13 RMETINGDFTEIFVIYLILVGDLTESKEMP-LRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILG 84 (405)
Q Consensus 13 ~l~~l~~~~~~~~~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~ 84 (405)
.+..+|..++ +++++||+++|.++.+| ..++++++|++|++....- .......++.+.+|+ +|++..
T Consensus 11 ~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~-~L~Ls~ 78 (520)
T 2z7x_B 11 GLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQELE-YLDLSH 78 (520)
T ss_dssp CCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC-CEEEGGGGTTCTTCC-EEECCS
T ss_pred Cccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCcc-CCcChHHhhcccCCC-EEecCC
Confidence 3556776654 68889999999888776 4688889998887533221 111234566677777 777654
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=3.1e-19 Score=175.69 Aligned_cols=276 Identities=20% Similarity=0.200 Sum_probs=202.8
Q ss_pred cccccCchhhheeeEEEEEccCCCCccC-ccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChh
Q 044605 14 METINGDFTEIFVIYLILVGDLTESKEM-PLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAE 92 (405)
Q Consensus 14 l~~l~~~~~~~~~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~ 92 (405)
+..++...+..+++|++|+|++|.++.+ |..|+++.+|++|++....-. ......+..+.+|+ .|.+....- ...
T Consensus 44 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~Ls~n~i-~~~- 119 (477)
T 2id5_A 44 IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLT-KLDISENKI-VIL- 119 (477)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCC-EEECTTSCC-CEE-
T ss_pred cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCC-EEECCCCcc-ccC-
Confidence 4556555666789999999999999977 677999999999985432211 11222355666676 777754221 100
Q ss_pred hhhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCC-CcccCCCCCCCccEEEEEcCCCCCcCCC--CCC
Q 044605 93 DAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKF-PAWLGQSSFENLVVLRFRNCNQCTSLPS--VGH 169 (405)
Q Consensus 93 ~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~ 169 (405)
....+..+++|+.|++.++....+ |..+. .+++|+.|++++|. ++.++. +..
T Consensus 120 ----------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~~~l~~ 174 (477)
T 2id5_A 120 ----------------------LDYMFQDLYNLKSLEVGDNDLVYISHRAFS--GLNSLEQLTLEKCN-LTSIPTEALSH 174 (477)
T ss_dssp ----------------------CTTTTTTCTTCCEEEECCTTCCEECTTSST--TCTTCCEEEEESCC-CSSCCHHHHTT
T ss_pred ----------------------ChhHccccccCCEEECCCCccceeChhhcc--CCCCCCEEECCCCc-CcccChhHhcc
Confidence 122356788999999998876544 33454 78999999999987 666664 788
Q ss_pred CCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC--Ccc-ccCCCC
Q 044605 170 LPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QLL-VSCTTL 243 (405)
Q Consensus 170 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l~-~~l~~l 243 (405)
+++|+.|++.++. +..++. .....+++|++|+++++..+. .++. ...+|+.|++++|. .++ ..+..+
T Consensus 175 l~~L~~L~l~~n~-i~~~~~-----~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 175 LHGLIVLRLRHLN-INAIRD-----YSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CTTCCEEEEESCC-CCEECT-----TCSCSCTTCCEEEEECCTTCC-EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred cCCCcEEeCCCCc-CcEeCh-----hhcccCcccceeeCCCCcccc-ccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 9999999999875 444433 122348999999999987666 3443 34589999999875 333 457789
Q ss_pred CCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccc
Q 044605 244 PLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFP 320 (405)
Q Consensus 244 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~ 320 (405)
++|+.|++++|... .++...|..+.+| ++++++ .++.+ |..+..+++|+.|++++|.++.++
T Consensus 248 ~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 312 (477)
T 2id5_A 248 VYLRFLNLSYNPIS-----TIEGSMLHELLRLQEIQLVGG----------QLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312 (477)
T ss_dssp TTCCEEECCSSCCC-----EECTTSCTTCTTCCEEECCSS----------CCSEECTTTBTTCTTCCEEECCSSCCSCCC
T ss_pred cccCeeECCCCcCC-----ccChhhccccccCCEEECCCC----------ccceECHHHhcCcccCCEEECCCCcCceeC
Confidence 99999999998754 5666778888888 888887 33444 668889999999999999999988
Q ss_pred cCCCCCcccCCCCCCcCEEeeecCCC
Q 044605 321 KGGLESLSFVRNLTSLERLELSRCPI 346 (405)
Q Consensus 321 ~~~~~~l~~l~~l~~L~~L~l~~c~~ 346 (405)
...| .++++|++|++++|+.
T Consensus 313 ~~~~------~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 313 ESVF------HSVGNLETLILDSNPL 332 (477)
T ss_dssp GGGB------SCGGGCCEEECCSSCE
T ss_pred HhHc------CCCcccCEEEccCCCc
Confidence 7654 7788999999998763
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=2.5e-19 Score=175.89 Aligned_cols=296 Identities=16% Similarity=0.183 Sum_probs=205.0
Q ss_pred hhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhccccc
Q 044605 22 TEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTT 101 (405)
Q Consensus 22 ~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~ 101 (405)
+..+++|++|++++|.++.+|. ++++++|++|++... ....+..+..+.+|+ .|.+.... +.... ....+..
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n---~l~~~~~~~~l~~L~-~L~l~~n~-l~~~~--~~~~l~~ 157 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN---QITDIDPLKNLTNLN-RLELSSNT-ISDIS--ALSGLTS 157 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS---CCCCCGGGTTCTTCS-EEEEEEEE-ECCCG--GGTTCTT
T ss_pred hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC---CCCCChHHcCCCCCC-EEECCCCc-cCCCh--hhccCCc
Confidence 3457899999999999998887 999999999975433 222334466777777 77775432 11111 1222222
Q ss_pred ccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCC
Q 044605 102 SSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGM 181 (405)
Q Consensus 102 l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~ 181 (405)
++....... . .....+..+++|+.|++.++....++. +. .+++|+.|++++|. +..+++++.+++|++|++.++
T Consensus 158 L~~L~l~~~-~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n 231 (466)
T 1o6v_A 158 LQQLSFGNQ-V-TDLKPLANLTTLERLDISSNKVSDISV-LA--KLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGN 231 (466)
T ss_dssp CSEEEEEES-C-CCCGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSS
T ss_pred ccEeecCCc-c-cCchhhccCCCCCEEECcCCcCCCChh-hc--cCCCCCEEEecCCc-ccccccccccCCCCEEECCCC
Confidence 222100000 0 011236678899999999988766653 44 68999999999987 666666888999999999886
Q ss_pred CCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC-CCCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCcc
Q 044605 182 GRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP-QHFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVA 258 (405)
Q Consensus 182 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~-~~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~ 258 (405)
. +..++. ...+++|++|+++++ .+.+..+ ..+++|+.|++++|. .++. +..+++|+.|++++|....
T Consensus 232 ~-l~~~~~-------l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~ 301 (466)
T 1o6v_A 232 Q-LKDIGT-------LASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED 301 (466)
T ss_dssp C-CCCCGG-------GGGCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC
T ss_pred C-cccchh-------hhcCCCCCEEECCCC-ccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC
Confidence 4 444433 334899999999986 4443222 368999999999875 3333 7789999999999986553
Q ss_pred ccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCc
Q 044605 259 WINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSL 336 (405)
Q Consensus 259 ~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L 336 (405)
++. +..+++| +++++| .++.++. +..+++|+.|++++|.++.++. +.++++|
T Consensus 302 -----~~~--~~~l~~L~~L~L~~n----------~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--------l~~l~~L 355 (466)
T 1o6v_A 302 -----ISP--ISNLKNLTYLTLYFN----------NISDISP-VSSLTKLQRLFFYNNKVSDVSS--------LANLTNI 355 (466)
T ss_dssp -----CGG--GGGCTTCSEEECCSS----------CCSCCGG-GGGCTTCCEEECCSSCCCCCGG--------GTTCTTC
T ss_pred -----chh--hcCCCCCCEEECcCC----------cCCCchh-hccCccCCEeECCCCccCCchh--------hccCCCC
Confidence 222 5566677 788877 3344443 6789999999999988887742 5788999
Q ss_pred CEEeeecCCCCcccCCCCCcCCccEEeecCCc
Q 044605 337 ERLELSRCPILKSFPENGLLPSVVYLSIYLCP 368 (405)
Q Consensus 337 ~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 368 (405)
++|++++|......| ...+++|++|++++|+
T Consensus 356 ~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp CEEECCSSCCCBCGG-GTTCTTCCEEECCCEE
T ss_pred CEEeCCCCccCccch-hhcCCCCCEEeccCCc
Confidence 999999986544444 4555789999999884
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=2.1e-19 Score=179.89 Aligned_cols=67 Identities=13% Similarity=0.027 Sum_probs=45.8
Q ss_pred CcccccCchhhheeeEEEEEccCCCCccC-ccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcc
Q 044605 13 RMETINGDFTEIFVIYLILVGDLTESKEM-PLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILG 84 (405)
Q Consensus 13 ~l~~l~~~~~~~~~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~ 84 (405)
.+..+|.+++ +.+++||+++|.++.+ |..++++++|++|++....- .......+..+.+|+ +|++..
T Consensus 16 ~l~~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~-~L~Ls~ 83 (549)
T 2z81_A 16 SFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLE-HLDLSD 83 (549)
T ss_dssp CCSSCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC-CEECTTTTTTCTTCC-EEECTT
T ss_pred ccccccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCc-CccChhhccccccCC-EEECCC
Confidence 4667777654 6889999999999876 45699999999997533221 112224466677777 777765
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=4.2e-19 Score=170.20 Aligned_cols=302 Identities=13% Similarity=0.042 Sum_probs=216.7
Q ss_pred eeeEEEEEccCCCCccCccc-cCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhccccccc
Q 044605 25 FVIYLILVGDLTESKEMPLR-IGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSS 103 (405)
Q Consensus 25 ~~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~ 103 (405)
+.++++|+++++.++.+|.. ++++++|++|++....- .......+..+.+|+ .|.+.... +...
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~-~L~L~~n~-l~~~------------ 108 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQ-KLYMGFNA-IRYL------------ 108 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCC-EEECCSSC-CCCC------------
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc-cccChhhccCCCCcC-EEECCCCC-CCcC------------
Confidence 57899999999999999987 68899999997532221 111223456666676 77775422 1110
Q ss_pred CChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCC
Q 044605 104 DSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGM 181 (405)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~ 181 (405)
....+..+++|+.|++.++....+|..+. ..+++|+.|++++|. +..++. ++.+++|++|++.++
T Consensus 109 -----------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 109 -----------PPHVFQNVPLLTVLVLERNDLSSLPRGIF-HNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp -----------CTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSS
T ss_pred -----------CHHHhcCCCCCCEEECCCCccCcCCHHHh-cCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCC
Confidence 12235668899999999998888887642 268999999999987 555543 888999999999886
Q ss_pred CCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCCCCCcceEEEcCcCCccccc
Q 044605 182 GRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWIN 261 (405)
Q Consensus 182 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~ 261 (405)
. +..++ ...+++|+.|+++++ .+.+ ++ ..++|+.|+++++.--.......++|+.|++++|....
T Consensus 176 ~-l~~~~--------~~~l~~L~~L~l~~n-~l~~-~~-~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~--- 240 (390)
T 3o6n_A 176 R-LTHVD--------LSLIPSLFHANVSYN-LLST-LA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--- 240 (390)
T ss_dssp C-CSBCC--------GGGCTTCSEEECCSS-CCSE-EE-CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC---
T ss_pred c-CCccc--------cccccccceeecccc-cccc-cC-CCCcceEEECCCCeeeeccccccccccEEECCCCCCcc---
Confidence 4 33332 334899999999885 3442 22 45689999998875321222346899999999986553
Q ss_pred cccccCCCCCCCCC--eeecCCCCccEEecCCCCcc-cccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCE
Q 044605 262 RPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQES-LPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLER 338 (405)
Q Consensus 262 ~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~-lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~ 338 (405)
. ..+..+++| ++++++ .++. .|..+..+++|+.|++++|+++.+|.. ...+++|++
T Consensus 241 --~--~~l~~l~~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~l~~L~~ 299 (390)
T 3o6n_A 241 --T--AWLLNYPGLVEVDLSYN----------ELEKIMYHPFVKMQRLERLYISNNRLVALNLY-------GQPIPTLKV 299 (390)
T ss_dssp --C--GGGGGCTTCSEEECCSS----------CCCEEESGGGTTCSSCCEEECCSSCCCEEECS-------SSCCTTCCE
T ss_pred --c--HHHcCCCCccEEECCCC----------cCCCcChhHccccccCCEEECCCCcCcccCcc-------cCCCCCCCE
Confidence 1 356677777 888887 3344 467889999999999999999998865 467899999
Q ss_pred EeeecCCCCcccCCC-CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEee
Q 044605 339 LELSRCPILKSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVF 399 (405)
Q Consensus 339 L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 399 (405)
|++++| .++.+|.. ..+++|++|++++|+-- .........++.+.+.++.+.
T Consensus 300 L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i~--------~~~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 300 LDLSHN-HLLHVERNQPQFDRLENLYLDHNSIV--------TLKLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp EECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC--------CCCCCTTCCCSEEECCSSCEE
T ss_pred EECCCC-cceecCccccccCcCCEEECCCCccc--------eeCchhhccCCEEEcCCCCcc
Confidence 999998 46677655 44579999999998521 223556678888888887664
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=4.2e-19 Score=166.44 Aligned_cols=279 Identities=14% Similarity=0.147 Sum_probs=152.6
Q ss_pred hccCcccccCchhhhe-----eeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcc
Q 044605 10 RLRRMETINGDFTEIF-----VIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILG 84 (405)
Q Consensus 10 ~lr~l~~l~~~~~~~~-----~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~ 84 (405)
....+..+|..+...+ ..+++++++++.++.+|..+. .+|++|++....- .......+..+.+|+ .|.+..
T Consensus 12 ~~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i-~~~~~~~~~~l~~L~-~L~L~~ 87 (332)
T 2ft3_A 12 GIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDI-SELRKDDFKGLQHLY-ALVLVN 87 (332)
T ss_dssp -------------CCCCSSCEEETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCC-CEECTTTTTTCTTCC-EEECCS
T ss_pred CCCccccCCCcccCCCCCCCcccCCEEECCCCCccccCCCCC--CCCeEEECCCCcC-CccCHhHhhCCCCCc-EEECCC
Confidence 3344556666555443 378999999999999998875 6788886432211 111223456666666 666654
Q ss_pred cccCCChhhhhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcC
Q 044605 85 LENVNVAEDAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSL 164 (405)
Q Consensus 85 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l 164 (405)
.. +.. .....+..+++|+.|++.++....+|..+. ++|++|++++|. ++.+
T Consensus 88 n~-l~~-----------------------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~----~~L~~L~l~~n~-i~~~ 138 (332)
T 2ft3_A 88 NK-ISK-----------------------IHEKAFSPLRKLQKLYISKNHLVEIPPNLP----SSLVELRIHDNR-IRKV 138 (332)
T ss_dssp SC-CCE-----------------------ECGGGSTTCTTCCEEECCSSCCCSCCSSCC----TTCCEEECCSSC-CCCC
T ss_pred Cc-cCc-----------------------cCHhHhhCcCCCCEEECCCCcCCccCcccc----ccCCEEECCCCc-cCcc
Confidence 21 110 012346667888888888887777776443 788888888877 5666
Q ss_pred CC--CCCCCCccEEeecCCCCCe--eeCCCCCCCCCCCCCCcccEEeeccCccccccCCC-CCCcccEEEEeccC--Cc-
Q 044605 165 PS--VGHLPLLKNLVIKGMGRMA--KAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ-HFSSLERIVIMSCE--QL- 236 (405)
Q Consensus 165 ~~--l~~l~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~-~~~~L~~L~l~~c~--~l- 236 (405)
+. +..+++|++|++.++.-.. ..+. ....+ +|++|+++++ .++ .+|. .+++|++|+++++. .+
T Consensus 139 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------~~~~l-~L~~L~l~~n-~l~-~l~~~~~~~L~~L~l~~n~i~~~~ 209 (332)
T 2ft3_A 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPG------AFDGL-KLNYLRISEA-KLT-GIPKDLPETLNELHLDHNKIQAIE 209 (332)
T ss_dssp CSGGGSSCSSCCEEECCSCCCBGGGSCTT------SSCSC-CCSCCBCCSS-BCS-SCCSSSCSSCSCCBCCSSCCCCCC
T ss_pred CHhHhCCCccCCEEECCCCccccCCCCcc------cccCC-ccCEEECcCC-CCC-ccCccccCCCCEEECCCCcCCccC
Confidence 54 7788888888888764211 1111 11123 7888888775 455 2443 34667777777653 22
Q ss_pred cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCC
Q 044605 237 LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGS 314 (405)
Q Consensus 237 ~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~ 314 (405)
+..+..+++|++|++++|... .++...+..+++| +++++| .++.+|.++..+++|+.|++++|
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L~~N----------~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIR-----MIENGSLSFLPTLRELHLDNN----------KLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCC-----CCCTTGGGGCTTCCEEECCSS----------CCCBCCTTGGGCTTCCEEECCSS
T ss_pred HHHhcCCCCCCEEECCCCcCC-----cCChhHhhCCCCCCEEECCCC----------cCeecChhhhcCccCCEEECCCC
Confidence 345666777777777766443 2333344444444 444444 33445555555555555555555
Q ss_pred cccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605 315 YLVSFPKGGLESLSFVRNLTSLERLELSRCP 345 (405)
Q Consensus 315 ~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~ 345 (405)
.++.++...|.........++|+.|++++|+
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CCCccChhHccccccccccccccceEeecCc
Confidence 5555554433211101113445555555544
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=2.2e-18 Score=177.03 Aligned_cols=321 Identities=13% Similarity=0.060 Sum_probs=156.7
Q ss_pred eEEEEEccCCCCccCc-cccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCC--------Chhhhhhc
Q 044605 27 IYLILVGDLTESKEMP-LRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVN--------VAEDAKEG 97 (405)
Q Consensus 27 ~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~--------~~~~~~~~ 97 (405)
+|++|++++|.++.++ ..++++.+|++|++....- .......+..+.+|+ .+.+....... ...+....
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI-QHLFSHSLHGLFNVR-YLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB-SEECTTTTTTCTTCC-EEECTTCBCCC------CCEECTTTTT
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCcc-CccChhhhcCCCCcc-EEeccchhhhcccccccccccChhhcc
Confidence 4889999988888765 5588888888887532211 112223455555565 66654311000 00000111
Q ss_pred ccccccCCh-hhHHHHHHHhccCCCCCCccEEEEEeeC--CCCCCcccC-CCCCCCccEEEEEcCCCCCcC-C-CCCCCC
Q 044605 98 NRTTSSDSR-EVAEIQTRVLEMLKPHYGLKELKVQNYG--GTKFPAWLG-QSSFENLVVLRFRNCNQCTSL-P-SVGHLP 171 (405)
Q Consensus 98 ~l~~l~~~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~lp~~~~-~~~l~~L~~L~l~~~~~~~~l-~-~l~~l~ 171 (405)
.+..+.... ..+.........+..+++|+.|++.++. ...++.... ....++|+.|++++|. +..+ | .+..++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLG 405 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC-CCEECTTTTTTCT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC-CCeEChhhhhCCC
Confidence 111111100 0000000111223445555555555442 111111110 0012456666666655 3333 2 366777
Q ss_pred CccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC-----CccccCCCC
Q 044605 172 LLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE-----QLLVSCTTL 243 (405)
Q Consensus 172 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~-----~l~~~l~~l 243 (405)
+|++|+++++.-...++. .....+++|++|+++++. +.+..+. .+++|+.|++.++. ..|..+..+
T Consensus 406 ~L~~L~L~~N~l~~~~~~-----~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTG-----QEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp TCCEEECCSSCCEEECCS-----GGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred CCCEEeCCCCcCccccCc-----ccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence 788888777653333432 011236777777777753 3322221 46677777776653 235666677
Q ss_pred CCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCc---------------------c-EEecCCCCccccc-
Q 044605 244 PLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVL---------------------P-WEIGSPDQESLPE- 298 (405)
Q Consensus 244 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l---------------------~-l~i~~~~l~~lp~- 298 (405)
++|+.|++++|... .++.+.+..+++| ++++++... + +.++.+.++.+|.
T Consensus 480 ~~L~~L~Ls~N~l~-----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~ 554 (680)
T 1ziw_A 480 RNLTILDLSNNNIA-----NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554 (680)
T ss_dssp TTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCEEECCCCCCC-----cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHH
Confidence 77777777776543 4555566666666 666655211 0 1222334444443
Q ss_pred ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--C-CcCCccEEeecCCc
Q 044605 299 GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--G-LLPSVVYLSIYLCP 368 (405)
Q Consensus 299 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~-~~~~L~~L~i~~c~ 368 (405)
.+.++++|+.|++++|+++.+|...| .++++|++|++++| .++.++.. . .+++|++|+++++|
T Consensus 555 ~~~~l~~L~~L~Ls~N~l~~l~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLNNLNTLPASVF------NNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTT------TTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred HcccccCcceeECCCCCCCcCCHhHh------CCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 24455555555555555555554432 44555555555554 33444332 1 23455666665554
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=1.3e-18 Score=182.93 Aligned_cols=353 Identities=12% Similarity=0.042 Sum_probs=172.3
Q ss_pred CcccccCchhhheeeEEEEEccCCCCccC-ccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCCh
Q 044605 13 RMETINGDFTEIFVIYLILVGDLTESKEM-PLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVA 91 (405)
Q Consensus 13 ~l~~l~~~~~~~~~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~ 91 (405)
.+..||. ..+.+++|||++|.++.+ |..++++++|++|++.............+.++.+|+ .|.+.... +...
T Consensus 15 ~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~-~L~Ls~N~-l~~~ 88 (844)
T 3j0a_A 15 NLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR-ILDLGSSK-IYFL 88 (844)
T ss_dssp CSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC-EEECTTCC-CCEE
T ss_pred CCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC-EEECCCCc-Cccc
Confidence 4667776 357899999999999876 567999999999985433221111244567777777 77776422 1111
Q ss_pred hhhhhcccccccCCh-hhHHHHHHHhcc--CCCCCCccEEEEEeeCCCCC--CcccCCCCCCCccEEEEEcCCCCCcCC-
Q 044605 92 EDAKEGNRTTSSDSR-EVAEIQTRVLEM--LKPHYGLKELKVQNYGGTKF--PAWLGQSSFENLVVLRFRNCNQCTSLP- 165 (405)
Q Consensus 92 ~~~~~~~l~~l~~~~-~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~l--p~~~~~~~l~~L~~L~l~~~~~~~~l~- 165 (405)
.......+..++... ..+......+.. +..+++|+.|++.+|....+ +..+. .+++|+.|++++|......+
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~--~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG--KLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG--TCSSCCEEEEESSCCCCCCSG
T ss_pred CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh--hCCCCCEEECCCCcCCeeCHH
Confidence 111112222222200 000000001111 33445555555555443322 12233 44555555555544111111
Q ss_pred CCCCC--CCccEEeecCCCCCeeeCC-CCCCCCCCCCCCcccEEeeccCccccccCCC----------------------
Q 044605 166 SVGHL--PLLKNLVIKGMGRMAKAGT-TGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---------------------- 220 (405)
Q Consensus 166 ~l~~l--~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---------------------- 220 (405)
.++.+ ++|+.|++.++.-....+. ++. ......-.+|++|+++++. +.+..+.
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred HcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEecCCCc-CchhHHHHHHhhcCcccccceeccccccc
Confidence 12222 3444444443322111111 110 0000001137777776651 1111110
Q ss_pred -------------------CCCcccEEEEeccCCc---cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--e
Q 044605 221 -------------------HFSSLERIVIMSCEQL---LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--P 276 (405)
Q Consensus 221 -------------------~~~~L~~L~l~~c~~l---~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l 276 (405)
..++|+.|+++++.-. +..|..+++|+.|++++|... .++...|..+++| |
T Consensus 245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-----KIADEAFYGLDNLQVL 319 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-----EECTTTTTTCSSCCEE
T ss_pred ccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC-----CCChHHhcCCCCCCEE
Confidence 1256677777665321 445666777777777776544 3444566666666 6
Q ss_pred eecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCC
Q 044605 277 EKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGL 355 (405)
Q Consensus 277 ~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~ 355 (405)
+++++ .++.+ |..+..+++|+.|++++|.++.++...| .++++|++|++++|. ++.++.
T Consensus 320 ~Ls~N----------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~------~~l~~L~~L~Ls~N~-l~~i~~--- 379 (844)
T 3j0a_A 320 NLSYN----------LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF------KFLEKLQTLDLRDNA-LTTIHF--- 379 (844)
T ss_dssp EEESC----------CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS------CSCCCCCEEEEETCC-SCCCSS---
T ss_pred ECCCC----------CCCccCHHHhcCCCCCCEEECCCCCCCccChhhh------cCCCCCCEEECCCCC-CCcccC---
Confidence 66666 33333 4566677777777777777776665543 556667777776653 344432
Q ss_pred cCCccEEeecCCcc--hHHHh-------------hc-CcccccccccccCeeEecceEeeC
Q 044605 356 LPSVVYLSIYLCPD--LEEKC-------------KK-DEREYCHLVADIPFVQLNHKLVFD 400 (405)
Q Consensus 356 ~~~L~~L~i~~c~~--l~~~~-------------~~-~~~~~~~~i~~i~~~~~~~~~~~~ 400 (405)
+++|+.|+++++.- ++... .. +.......+.+++.+.+.++.+..
T Consensus 380 ~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~ 440 (844)
T 3j0a_A 380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440 (844)
T ss_dssp CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCC
T ss_pred CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccc
Confidence 34555555555421 10000 00 000011256788888888887763
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=1.5e-18 Score=178.19 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=32.1
Q ss_pred CCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEee
Q 044605 331 RNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVF 399 (405)
Q Consensus 331 ~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 399 (405)
.++++|++|++++| .++.+|.. ..+++|++|+++++. ++. -....+..+..++.+.+.++.+.
T Consensus 533 ~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~----l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 533 KGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNN-LNT----LPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCC----CCTTTTTTCTTCCEEECTTSCCC
T ss_pred cCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCC-CCc----CCHhHhCCCCCCCEEECCCCcCC
Confidence 45556666666554 34455543 334566666665541 111 11122345566777777766554
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=1.2e-18 Score=183.09 Aligned_cols=35 Identities=17% Similarity=-0.065 Sum_probs=20.2
Q ss_pred hhheeeEEEEEccCCCCccC-ccccCCCccCcccCc
Q 044605 22 TEIFVIYLILVGDLTESKEM-PLRIGKLTSLRTLTK 56 (405)
Q Consensus 22 ~~~~~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~~ 56 (405)
+..+++|++|+|++|.++.+ |..|+++++|++|++
T Consensus 69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 104 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104 (844)
T ss_dssp TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEEC
T ss_pred hcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeC
Confidence 34455666666666666544 455666666666653
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=2e-18 Score=173.47 Aligned_cols=66 Identities=15% Similarity=0.038 Sum_probs=43.2
Q ss_pred cccccCchhhheeeEEEEEccCCCCccCc-cccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcc
Q 044605 14 METINGDFTEIFVIYLILVGDLTESKEMP-LRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILG 84 (405)
Q Consensus 14 l~~l~~~~~~~~~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~ 84 (405)
+..+|.++. +++++||+++|.++.+| ..++++++|++|++....- .......+..+.+|+ +|++..
T Consensus 43 L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~-~L~Ls~ 109 (562)
T 3a79_B 43 LTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLE-YLDVSH 109 (562)
T ss_dssp CCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC-CEECTTTTTTCTTCC-EEECTT
T ss_pred CccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCC-CcCCHHHhCCCCCCC-EEECCC
Confidence 455666543 68889999999988877 4688999999887533221 111234456666666 777654
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=4.3e-19 Score=178.42 Aligned_cols=208 Identities=22% Similarity=0.236 Sum_probs=127.5
Q ss_pred ccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeee--CC-CCC-
Q 044605 117 EMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKA--GT-TGG- 192 (405)
Q Consensus 117 ~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~--~~-~~~- 192 (405)
..+..+ +|+.|++.++....+|.+ .+++|+.|++++|.....++ ...+++|++|++.++.-.... +. +..
T Consensus 299 ~~~~~~-~L~~L~l~~n~~~~l~~~----~l~~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 372 (570)
T 2z63_A 299 DFSYNF-GWQHLELVNCKFGQFPTL----KLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372 (570)
T ss_dssp BCCSCC-CCSEEEEESCBCSSCCBC----BCSSCCEEEEESCBSCCBCC-CCBCTTCCEEECCSSCCBEEEEEEHHHHTC
T ss_pred hhhccC-CccEEeeccCcccccCcc----cccccCEEeCcCCccccccc-cccCCCCCEEeCcCCccCcccccccccccc
Confidence 334556 899999999887777762 56778888888776433333 366777777777765422111 11 111
Q ss_pred -----------C----CCCCCCCCcccEEeeccCccccccCC----CCCCcccEEEEeccCC---ccccCCCCCCcceEE
Q 044605 193 -----------D----QQAAKGFPCLRELSIINCSKLKGRLP----QHFSSLERIVIMSCEQ---LLVSCTTLPLLCELE 250 (405)
Q Consensus 193 -----------~----~~~~~~~~~L~~L~l~~~~~l~~~l~----~~~~~L~~L~l~~c~~---l~~~l~~l~~L~~L~ 250 (405)
. ......+++|++|+++++. +.+..+ ..+++|+.|++++|.. .+..+..+++|++|+
T Consensus 373 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 451 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451 (570)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CccCEEECCCCccccccccccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence 0 0002234555555555532 222222 1456666666666542 234455566666666
Q ss_pred EcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCc
Q 044605 251 IDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESL 327 (405)
Q Consensus 251 l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l 327 (405)
+++|.... ...+..+..+++| +++++| .++.+ |..+..+++|+.|++++|.++.++...|
T Consensus 452 l~~n~l~~----~~~p~~~~~l~~L~~L~l~~n----------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--- 514 (570)
T 2z63_A 452 MAGNSFQE----NFLPDIFTELRNLTFLDLSQC----------QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF--- 514 (570)
T ss_dssp CTTCEEGG----GEECSCCTTCTTCCEEECTTS----------CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT---
T ss_pred CcCCcCcc----ccchhhhhcccCCCEEECCCC----------ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh---
Confidence 66664431 1122355556666 666666 44555 7788999999999999999999887654
Q ss_pred ccCCCCCCcCEEeeecCCCCcccC
Q 044605 328 SFVRNLTSLERLELSRCPILKSFP 351 (405)
Q Consensus 328 ~~l~~l~~L~~L~l~~c~~l~~l~ 351 (405)
.++++|++|++++|+...+.|
T Consensus 515 ---~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 515 ---DRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp ---TTCTTCCEEECCSSCBCCCTT
T ss_pred ---hcccCCcEEEecCCcccCCCc
Confidence 788999999999987654444
No 34
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=1.8e-18 Score=161.83 Aligned_cols=212 Identities=20% Similarity=0.271 Sum_probs=169.5
Q ss_pred CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCC
Q 044605 122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGF 200 (405)
Q Consensus 122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 200 (405)
..+++.|++.++....+|..+. .+++|+.|++++|. +..+|. ++.+++|++|++.++. +..++. ....+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~------~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAF--RLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPA------SIASL 149 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGG--GGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCG------GGGGC
T ss_pred ccceeEEEccCCCchhcChhhh--hCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcH------HHhcC
Confidence 5789999999999889998887 79999999999988 557775 8899999999999874 446654 12348
Q ss_pred CcccEEeeccCccccccCCC------------CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCcccccccccc
Q 044605 201 PCLRELSIINCSKLKGRLPQ------------HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEA 266 (405)
Q Consensus 201 ~~L~~L~l~~~~~l~~~l~~------------~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 266 (405)
++|++|++++|.... .+|. .+++|+.|++++|. .+|..+..+++|++|++++|... .++.
T Consensus 150 ~~L~~L~L~~n~~~~-~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-----~l~~ 223 (328)
T 4fcg_A 150 NRLRELSIRACPELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-----ALGP 223 (328)
T ss_dssp TTCCEEEEEEETTCC-CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-----CCCG
T ss_pred cCCCEEECCCCCCcc-ccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-----cCch
Confidence 999999999986655 5664 28899999999875 56778888999999999998765 3343
Q ss_pred CCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeC-CcccccccCCCCCcccCCCCCCcCEEeeec
Q 044605 267 GIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVG-SYLVSFPKGGLESLSFVRNLTSLERLELSR 343 (405)
Q Consensus 267 ~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~-~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~ 343 (405)
.+..+++| +++++|... +.+|..+..+++|+.|++++ +.+..+|.. +.++++|++|++++
T Consensus 224 -~l~~l~~L~~L~Ls~n~~~---------~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-------~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 224 -AIHHLPKLEELDLRGCTAL---------RNYPPIFGGRAPLKRLILKDCSNLLTLPLD-------IHRLTQLEKLDLRG 286 (328)
T ss_dssp -GGGGCTTCCEEECTTCTTC---------CBCCCCTTCCCCCCEEECTTCTTCCBCCTT-------GGGCTTCCEEECTT
T ss_pred -hhccCCCCCEEECcCCcch---------hhhHHHhcCCCCCCEEECCCCCchhhcchh-------hhcCCCCCEEeCCC
Confidence 46777778 888887544 56788888999999999998 456677765 57888999999999
Q ss_pred CCCCcccCCC-CCcCCccEEeecC
Q 044605 344 CPILKSFPEN-GLLPSVVYLSIYL 366 (405)
Q Consensus 344 c~~l~~l~~~-~~~~~L~~L~i~~ 366 (405)
|+.++.+|.. ..+++|+.+++..
T Consensus 287 n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 287 CVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCchhhccHHHhhccCceEEeCCH
Confidence 9988888876 5566788887764
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=8.5e-18 Score=157.33 Aligned_cols=263 Identities=13% Similarity=0.114 Sum_probs=148.7
Q ss_pred eEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhcccccccCCh
Q 044605 27 IYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSDSR 106 (405)
Q Consensus 27 ~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~~~~ 106 (405)
++++++++++.++.+|..+. .++++|++....- .......++.+.+|+ +|.+.... +...
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i-~~~~~~~~~~l~~L~-~L~L~~n~-l~~~--------------- 91 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKI-TEIKDGDFKNLKNLH-TLILINNK-ISKI--------------- 91 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCC-CCBCTTTTTTCTTCC-EEECCSSC-CCCB---------------
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcC-CEeChhhhccCCCCC-EEECCCCc-CCee---------------
Confidence 78899999999999988764 5777776422211 111122355566666 66664321 1100
Q ss_pred hhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCC
Q 044605 107 EVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRM 184 (405)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l 184 (405)
....+..+++|++|++.++....+|..+. ++|+.|++++|. ++.++. +..+++|++|++.++...
T Consensus 92 --------~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~----~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 92 --------SPGAFAPLVKLERLYLSKNQLKELPEKMP----KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp --------CTTTTTTCTTCCEEECCSSCCSBCCSSCC----TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred --------CHHHhcCCCCCCEEECCCCcCCccChhhc----ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCC
Confidence 12335567778888888777666665432 678888887776 555553 677888888888765422
Q ss_pred e--eeCCCCCCCCCCCCCCcccEEeeccCccccccCCC-CCCcccEEEEeccCC--c-cccCCCCCCcceEEEcCcCCcc
Q 044605 185 A--KAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ-HFSSLERIVIMSCEQ--L-LVSCTTLPLLCELEIDGFGEVA 258 (405)
Q Consensus 185 ~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~-~~~~L~~L~l~~c~~--l-~~~l~~l~~L~~L~l~~~~~l~ 258 (405)
. ..+. ....+++|++|+++++ .++ .+|. .+++|+.|+++++.- + +..+..+++|+.|++++|...
T Consensus 159 ~~~~~~~------~~~~l~~L~~L~l~~n-~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~- 229 (330)
T 1xku_A 159 SSGIENG------AFQGMKKLSYIRIADT-NIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS- 229 (330)
T ss_dssp GGGBCTT------GGGGCTTCCEEECCSS-CCC-SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-
T ss_pred ccCcChh------hccCCCCcCEEECCCC-ccc-cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc-
Confidence 1 1111 1223778888888775 344 2443 346777777776542 1 455666777777777776543
Q ss_pred ccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCc
Q 044605 259 WINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSL 336 (405)
Q Consensus 259 ~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L 336 (405)
.++...+..+++| +++++| .++.+|.++..+++|+.|++++|.++.++...|.........++|
T Consensus 230 ----~~~~~~~~~l~~L~~L~L~~N----------~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 230 ----AVDNGSLANTPHLRELHLNNN----------KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp ----EECTTTGGGSTTCCEEECCSS----------CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred ----eeChhhccCCCCCCEEECCCC----------cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence 2333344444444 555544 334555555555555555555555555554443211111123445
Q ss_pred CEEeeecCC
Q 044605 337 ERLELSRCP 345 (405)
Q Consensus 337 ~~L~l~~c~ 345 (405)
+.|++++|+
T Consensus 296 ~~l~l~~N~ 304 (330)
T 1xku_A 296 SGVSLFSNP 304 (330)
T ss_dssp SEEECCSSS
T ss_pred cceEeecCc
Confidence 555555544
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.78 E-value=9.6e-19 Score=171.02 Aligned_cols=312 Identities=14% Similarity=0.048 Sum_probs=188.7
Q ss_pred ccccCchhhheeeEEEEEccCCCCc-cCc-cccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCC-h
Q 044605 15 ETINGDFTEIFVIYLILVGDLTESK-EMP-LRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNV-A 91 (405)
Q Consensus 15 ~~l~~~~~~~~~~L~~L~L~~~~i~-~lP-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~-~ 91 (405)
..++...+..+++|++|++++|.+. .+| ..|+++++|++|++....- .......++.+.+|+ .|.+....-... .
T Consensus 43 ~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~ 120 (455)
T 3v47_A 43 AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLE-VLTLTQCNLDGAVL 120 (455)
T ss_dssp CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT-CEECTTTTTTCTTCC-EEECTTSCCBTHHH
T ss_pred CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc-CccChhhccCcccCC-EEeCCCCCCCcccc
Confidence 3343333445667777777777765 453 4577777777776432211 111233455555565 666654321100 0
Q ss_pred hhhhhcccccccCChh-hHHHHHHHhcc-CCCCCCccEEEEEeeCCCCC-CcccCCCCCCCccEEEEEcCCCCCcCCC--
Q 044605 92 EDAKEGNRTTSSDSRE-VAEIQTRVLEM-LKPHYGLKELKVQNYGGTKF-PAWLGQSSFENLVVLRFRNCNQCTSLPS-- 166 (405)
Q Consensus 92 ~~~~~~~l~~l~~~~~-~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~l-p~~~~~~~l~~L~~L~l~~~~~~~~l~~-- 166 (405)
.......+..++.... .+......... +..+++|+.|++.++..... |..+......+|+.|++++|. +..++.
T Consensus 121 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~ 199 (455)
T 3v47_A 121 SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYW 199 (455)
T ss_dssp HSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTC
T ss_pred CcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc-ccccchhh
Confidence 1111222222222000 00000111122 45678999999998775443 444432123677778777766 444332
Q ss_pred --------CCCCCCccEEeecCCCCCe----------------eeCC--------------CCC-C--CCCCCCCCcccE
Q 044605 167 --------VGHLPLLKNLVIKGMGRMA----------------KAGT--------------TGG-D--QQAAKGFPCLRE 205 (405)
Q Consensus 167 --------l~~l~~L~~L~l~~~~~l~----------------~~~~--------------~~~-~--~~~~~~~~~L~~ 205 (405)
+..+++|++|+++++.-.. .+.. +.. . .......++|++
T Consensus 200 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 279 (455)
T 3v47_A 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279 (455)
T ss_dssp TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCE
T ss_pred ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceE
Confidence 2345677777777653211 1100 000 0 001112368999
Q ss_pred EeeccCccccccCCC---CCCcccEEEEeccCC--c-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--ee
Q 044605 206 LSIINCSKLKGRLPQ---HFSSLERIVIMSCEQ--L-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PE 277 (405)
Q Consensus 206 L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~~--l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~ 277 (405)
|+++++ .+.+..|. .+++|+.|++++|.- + +..|..+++|++|++++|... .++...+..+++| ++
T Consensus 280 L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 280 CDLSKS-KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-----SIDSRMFENLDKLEVLD 353 (455)
T ss_dssp EECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-----EECGGGGTTCTTCCEEE
T ss_pred EEecCc-cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC-----CcChhHhcCcccCCEEE
Confidence 999986 44444453 678999999998752 2 557888999999999999664 5566678888888 89
Q ss_pred ecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccC
Q 044605 278 KSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFP 351 (405)
Q Consensus 278 l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~ 351 (405)
+++| .++.+ |..+..+++|+.|++++|+++.+|...| .++++|++|++++|+...+.|
T Consensus 354 Ls~N----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 354 LSYN----------HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF------DRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSS----------CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT------TTCTTCCEEECCSSCBCCCTT
T ss_pred CCCC----------cccccChhhccccccccEEECCCCccccCCHhHh------ccCCcccEEEccCCCcccCCC
Confidence 9888 34444 6688999999999999999999987654 788999999999988665555
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=2.6e-18 Score=173.77 Aligned_cols=302 Identities=13% Similarity=0.046 Sum_probs=217.8
Q ss_pred eeeEEEEEccCCCCccCccc-cCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhccccccc
Q 044605 25 FVIYLILVGDLTESKEMPLR-IGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSS 103 (405)
Q Consensus 25 ~~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~ 103 (405)
+.+++++++++|.++.+|.. ++++++|++|++....- .......++.+.+|+ .|.+.... +...
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~L~~n~-l~~~------------ 114 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQ-KLYMGFNA-IRYL------------ 114 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCC-EEECCSSC-CCCC------------
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC-CCCChHHhcCCCCCC-EEECCCCc-CCCC------------
Confidence 57889999999999999987 78899999997533221 112223566677777 77775432 1111
Q ss_pred CChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCC
Q 044605 104 DSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGM 181 (405)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~ 181 (405)
....+..+++|+.|++.+|....+|..+. ..+++|+.|++++|. +..++ .++.+++|++|++.++
T Consensus 115 -----------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 115 -----------PPHVFQNVPLLTVLVLERNDLSSLPRGIF-HNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp -----------CTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTS
T ss_pred -----------CHHHHcCCCCCCEEEeeCCCCCCCCHHHh-ccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCC
Confidence 12235678899999999998888877642 268999999999987 55554 3888999999999886
Q ss_pred CCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCCCCCcceEEEcCcCCccccc
Q 044605 182 GRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWIN 261 (405)
Q Consensus 182 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~ 261 (405)
. +..++ ...+++|+.|+++++ .+.+ ++ ..++|+.|+++++.--...-...++|+.|++++|....
T Consensus 182 ~-l~~~~--------~~~l~~L~~L~l~~n-~l~~-l~-~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--- 246 (597)
T 3oja_B 182 R-LTHVD--------LSLIPSLFHANVSYN-LLST-LA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--- 246 (597)
T ss_dssp C-CSBCC--------GGGCTTCSEEECCSS-CCSE-EE-CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC---
T ss_pred C-CCCcC--------hhhhhhhhhhhcccC-cccc-cc-CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC---
Confidence 4 33332 334899999999885 4442 22 45789999998875321111224799999999986553
Q ss_pred cccccCCCCCCCCC--eeecCCCCccEEecCCCCcc-cccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCE
Q 044605 262 RPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQES-LPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLER 338 (405)
Q Consensus 262 ~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~-lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~ 338 (405)
...+..++.| |++++|. ++. .|..+..+++|+.|++++|.++.+|.. ...+++|++
T Consensus 247 ----~~~l~~l~~L~~L~Ls~N~----------l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-------~~~l~~L~~ 305 (597)
T 3oja_B 247 ----TAWLLNYPGLVEVDLSYNE----------LEKIMYHPFVKMQRLERLYISNNRLVALNLY-------GQPIPTLKV 305 (597)
T ss_dssp ----CGGGGGCTTCSEEECCSSC----------CCEEESGGGTTCSSCCEEECTTSCCCEEECS-------SSCCTTCCE
T ss_pred ----ChhhccCCCCCEEECCCCc----------cCCCCHHHhcCccCCCEEECCCCCCCCCCcc-------cccCCCCcE
Confidence 2356677778 8888873 343 467889999999999999999998866 467899999
Q ss_pred EeeecCCCCcccCCC-CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEee
Q 044605 339 LELSRCPILKSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVF 399 (405)
Q Consensus 339 L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 399 (405)
|++++|. ++.+|.. ..+++|++|++++|+-. +..+.....++.+.+.++.+.
T Consensus 306 L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 306 LDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV--------TLKLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp EECCSSC-CCCCGGGHHHHTTCSEEECCSSCCC--------CCCCCTTCCCSEEECCSSCEE
T ss_pred EECCCCC-CCccCcccccCCCCCEEECCCCCCC--------CcChhhcCCCCEEEeeCCCCC
Confidence 9999975 5677755 45679999999998621 223556678888888887664
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=1.9e-17 Score=166.38 Aligned_cols=147 Identities=16% Similarity=0.181 Sum_probs=110.4
Q ss_pred CCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC--C---ccccCCCCCCcceEEEcCcCCccccccccccCCC
Q 044605 198 KGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--Q---LLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIF 269 (405)
Q Consensus 198 ~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~---l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 269 (405)
..+++|++|+++++ .+++..|. .+++|+.|+++++. . ++..+..+++|+.|++++|.... .++.+.+
T Consensus 350 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~----~~~~~~~ 424 (562)
T 3a79_B 350 PSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS----HAYDRTC 424 (562)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS----CCSSCCC
T ss_pred cCCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC----ccChhhh
Confidence 45788899998886 44444443 67889999988764 2 23457788999999999887664 4777778
Q ss_pred CCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCC
Q 044605 270 DSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPIL 347 (405)
Q Consensus 270 ~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l 347 (405)
..+++| +++++|... +.+|..+. ++|+.|++++|+++.+|.. +.++++|++|++++| .+
T Consensus 425 ~~l~~L~~L~l~~n~l~---------~~~~~~l~--~~L~~L~L~~N~l~~ip~~-------~~~l~~L~~L~L~~N-~l 485 (562)
T 3a79_B 425 AWAESILVLNLSSNMLT---------GSVFRCLP--PKVKVLDLHNNRIMSIPKD-------VTHLQALQELNVASN-QL 485 (562)
T ss_dssp CCCTTCCEEECCSSCCC---------GGGGSSCC--TTCSEEECCSSCCCCCCTT-------TTSSCCCSEEECCSS-CC
T ss_pred cCcccCCEEECCCCCCC---------cchhhhhc--CcCCEEECCCCcCcccChh-------hcCCCCCCEEECCCC-CC
Confidence 888888 888887322 23343332 7999999999999999877 568899999999996 56
Q ss_pred cccCCC--CCcCCccEEeecCCc
Q 044605 348 KSFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 348 ~~l~~~--~~~~~L~~L~i~~c~ 368 (405)
+.+|.. ..+++|++|+++++|
T Consensus 486 ~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 486 KSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCHHHHhcCCCCCEEEecCCC
Confidence 788864 456799999999876
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=2.1e-18 Score=160.36 Aligned_cols=241 Identities=15% Similarity=0.153 Sum_probs=145.6
Q ss_pred eeEEEEEccCCCCc---cCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhcccccc
Q 044605 26 VIYLILVGDLTESK---EMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTS 102 (405)
Q Consensus 26 ~~L~~L~L~~~~i~---~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l 102 (405)
.++++|++++|.++ .+|..++++++|++|++..........+..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~------------------------------- 98 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA------------------------------- 98 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-------------------------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-------------------------------
Confidence 57999999999987 58999999999999975321211111222222
Q ss_pred cCChhhHHHHHHHhccCCCCCCccEEEEEeeCCC-CCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCCccEEeecC
Q 044605 103 SDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGT-KFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKG 180 (405)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~ 180 (405)
.+++|++|++.++... .+|..+. .+++|++|++++|.....+|. ++.+++|++|++.+
T Consensus 99 ------------------~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 99 ------------------KLTQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp ------------------GCTTCSEEEEEEECCEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred ------------------cCCCCCEEECcCCeeCCcCCHHHh--CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 3455666666665543 4565555 567777777777663224443 66677777777776
Q ss_pred CCCCeeeCC-CCCCCCCCCCCC-cccEEeeccCccccccCCC---CCCcccEEEEeccC---CccccCCCCCCcceEEEc
Q 044605 181 MGRMAKAGT-TGGDQQAAKGFP-CLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE---QLLVSCTTLPLLCELEID 252 (405)
Q Consensus 181 ~~~l~~~~~-~~~~~~~~~~~~-~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~---~l~~~l~~l~~L~~L~l~ 252 (405)
+.-...++. ++ .++ +|++|+++++ .+.+.+|. .+. |+.|+++++. ..+..+..+++|+.|+++
T Consensus 159 N~l~~~~p~~l~-------~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 159 NRISGAIPDSYG-------SFSKLFTSMTISRN-RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp SCCEEECCGGGG-------CCCTTCCEEECCSS-EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred CcccCcCCHHHh-------hhhhcCcEEECcCC-eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence 543334443 22 244 7777777764 34434443 222 6666666653 235566677777777777
Q ss_pred CcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCccc-ccccCCCCCcccCC
Q 044605 253 GFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLV-SFPKGGLESLSFVR 331 (405)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~l~~l~ 331 (405)
+|.... .+..+..+++|++|++++|.++ .+|.. +.
T Consensus 230 ~N~l~~-------------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-------l~ 265 (313)
T 1ogq_A 230 KNSLAF-------------------------------------DLGKVGLSKNLNGLDLRNNRIYGTLPQG-------LT 265 (313)
T ss_dssp SSEECC-------------------------------------BGGGCCCCTTCCEEECCSSCCEECCCGG-------GG
T ss_pred CCceee-------------------------------------ecCcccccCCCCEEECcCCcccCcCChH-------Hh
Confidence 764322 1222456667777777776666 44444 45
Q ss_pred CCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCcch
Q 044605 332 NLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDL 370 (405)
Q Consensus 332 ~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 370 (405)
.+++|++|++++|...+.+|....+++|+.+++.++|.+
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred cCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 667777777777655456666544556777777776644
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=8.3e-17 Score=157.27 Aligned_cols=56 Identities=16% Similarity=0.053 Sum_probs=41.3
Q ss_pred hhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcc
Q 044605 22 TEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILG 84 (405)
Q Consensus 22 ~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~ 84 (405)
+..+++|++|++++|.++.+| ++++++|++|++....- ..+ .++.+.+|+ .|.+..
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l---~~~-~~~~l~~L~-~L~L~~ 115 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKL---TNL-DVTPLTKLT-YLNCDT 115 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCC---SCC-CCTTCTTCC-EEECCS
T ss_pred hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCC---cee-ecCCCCcCC-EEECCC
Confidence 345789999999999999987 99999999997543322 222 266677777 777754
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=2.5e-16 Score=159.95 Aligned_cols=149 Identities=18% Similarity=0.167 Sum_probs=107.2
Q ss_pred CCCcccEEeeccCccccccCC----CCCCcccEEEEeccCC---ccccCCCCCCcceEEEcCcCCccccccccccCCCCC
Q 044605 199 GFPCLRELSIINCSKLKGRLP----QHFSSLERIVIMSCEQ---LLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDS 271 (405)
Q Consensus 199 ~~~~L~~L~l~~~~~l~~~l~----~~~~~L~~L~l~~c~~---l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 271 (405)
.+++|+.+++.++.... ..+ ..+++++.++++.+.. .+..+..+++|+.|++++|.... .+.++.|..
T Consensus 418 ~l~~L~~l~l~~~~~~~-~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~----~~~~~~~~~ 492 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----NFLPDIFTE 492 (635)
T ss_dssp TCTTCCEEECTTSEEES-TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG----GEECSCCTT
T ss_pred ccccccchhhhhccccc-cccccccccccccccccccccccccccccccccchhhhhhhhhhccccc----ccCchhhhh
Confidence 45666666666543333 222 1456677777766432 14556668899999999887665 566678888
Q ss_pred CCCC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCc
Q 044605 272 SNPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILK 348 (405)
Q Consensus 272 l~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~ 348 (405)
+++| |++++| +++.+ |..+.++++|+.|++++|+++.++...| .++++|++|++++|...+
T Consensus 493 l~~L~~L~Ls~N----------~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~------~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 493 LRNLTFLDLSQC----------QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY------KCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp CTTCCEEECTTS----------CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGG------TTCTTCCEEECTTSCCCB
T ss_pred ccccCEEECCCC----------ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHH------hCCCCCCEEECCCCcCCC
Confidence 8888 888888 44555 5678999999999999999999876654 788999999999975443
Q ss_pred ccCCC--CCcCCccEEeecCCc
Q 044605 349 SFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 349 ~l~~~--~~~~~L~~L~i~~c~ 368 (405)
..|.. ..+++|++|+++++|
T Consensus 557 ~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 557 SKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CCSSCTTCCCTTCCEEECTTCC
T ss_pred CCHHHHHhhhCcCCEEEeeCCC
Confidence 33433 345789999999754
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=6.9e-17 Score=164.07 Aligned_cols=143 Identities=19% Similarity=0.178 Sum_probs=87.6
Q ss_pred CCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCcc--------------EEecCCC-Cc-ccccccC
Q 044605 240 CTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLP--------------WEIGSPD-QE-SLPEGLH 301 (405)
Q Consensus 240 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~--------------l~i~~~~-l~-~lp~~~~ 301 (405)
+..+++|+.+++.++.... ..+...+..+..+ ++++.+.... +.++.+. .. ..|..+.
T Consensus 416 ~~~l~~L~~l~l~~~~~~~----~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~ 491 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQ----MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 491 (635)
T ss_dssp CTTCTTCCEEECTTSEEES----TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ccccccccchhhhhccccc----cccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh
Confidence 3445666666666554443 3333444555555 4444432111 2332222 23 3466788
Q ss_pred CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCcchHHHhhcCcc
Q 044605 302 KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCPDLEEKCKKDER 379 (405)
Q Consensus 302 ~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~l~~~~~~~~~ 379 (405)
.+++|+.|++++|+++.++...| .++++|++|++++| .++.++.. ..+++|++|+++++. +.. ...
T Consensus 492 ~l~~L~~L~Ls~N~L~~l~~~~f------~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~----~~~ 559 (635)
T 4g8a_A 492 ELRNLTFLDLSQCQLEQLSPTAF------NSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH-IMT----SKK 559 (635)
T ss_dssp TCTTCCEEECTTSCCCEECTTTT------TTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSC-CCB----CCS
T ss_pred hccccCEEECCCCccCCcChHHH------cCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCc-CCC----CCH
Confidence 99999999999999998876654 78889999999986 56666543 556799999999873 211 111
Q ss_pred cccccc-cccCeeEecceEe
Q 044605 380 EYCHLV-ADIPFVQLNHKLV 398 (405)
Q Consensus 380 ~~~~~i-~~i~~~~~~~~~~ 398 (405)
+....+ +.++.+.+.++.+
T Consensus 560 ~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 560 QELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp SCTTCCCTTCCEEECTTCCB
T ss_pred HHHHhhhCcCCEEEeeCCCC
Confidence 222333 5678888877654
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=155.66 Aligned_cols=204 Identities=17% Similarity=0.176 Sum_probs=117.2
Q ss_pred CCCCCCccEEEEEeeCCCCCCcc-cCCCCCCCccEEEEEcCCCCCcCCC---CCCCCCccEEeecCCCCCeeeCCCCCCC
Q 044605 119 LKPHYGLKELKVQNYGGTKFPAW-LGQSSFENLVVLRFRNCNQCTSLPS---VGHLPLLKNLVIKGMGRMAKAGTTGGDQ 194 (405)
Q Consensus 119 l~~~~~L~~L~l~~~~~~~lp~~-~~~~~l~~L~~L~l~~~~~~~~l~~---l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 194 (405)
+..+++|+.|++.++....+|.. +. .+++|++|++++|. ++.+|. +..+++|++|++.++..+..++.
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~----- 167 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFK--PLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQR----- 167 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHT--TCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-----
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhC--CCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCH-----
Confidence 44567777777777766666554 44 57778888887775 555554 66778888888877655555533
Q ss_pred CCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC--Ccccc-CCCCCCcceEEEcCcCCccccccccccCC
Q 044605 195 QAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QLLVS-CTTLPLLCELEIDGFGEVAWINRPVEAGI 268 (405)
Q Consensus 195 ~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 268 (405)
.....+++|++|+++++ .+.+..|. .+++|++|+++++. .++.. +..+++|+.|++++|.... ++...
T Consensus 168 ~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~~~~ 241 (353)
T 2z80_A 168 KDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT-----FHFSE 241 (353)
T ss_dssp TTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT-----CCCC-
T ss_pred HHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc-----ccccc
Confidence 11223777888887775 34433343 46677777777754 22222 2336788888888775432 22211
Q ss_pred CC---CCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeec
Q 044605 269 FD---SSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSR 343 (405)
Q Consensus 269 ~~---~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~ 343 (405)
+. ....+ +.+.++.. ..+.+..+|..+..+++|+.|++++|+++.+|...| .++++|++|++++
T Consensus 242 l~~~~~~~~l~~l~L~~~~l-----~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~------~~l~~L~~L~L~~ 310 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVKI-----TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF------DRLTSLQKIWLHT 310 (353)
T ss_dssp -----CCCCCCEEEEESCBC-----CHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT------TTCTTCCEEECCS
T ss_pred cccccccchhhccccccccc-----cCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH------hcCCCCCEEEeeC
Confidence 11 11112 33332210 001112345566677777777777777777766532 5666777777777
Q ss_pred CCCC
Q 044605 344 CPIL 347 (405)
Q Consensus 344 c~~l 347 (405)
|+..
T Consensus 311 N~~~ 314 (353)
T 2z80_A 311 NPWD 314 (353)
T ss_dssp SCBC
T ss_pred CCcc
Confidence 6543
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=4.8e-17 Score=158.83 Aligned_cols=34 Identities=12% Similarity=0.026 Sum_probs=7.9
Q ss_pred eeeEEEEEccCCCCccCccccCCCccCcccCcee
Q 044605 25 FVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFA 58 (405)
Q Consensus 25 ~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~ 58 (405)
...|++|++++|.++.+|.+|+++++|++|++..
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~ 43 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAW 43 (454)
T ss_dssp ------------------------CCHHHHHHHH
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccC
Confidence 4689999999999999999999999999997543
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=9.6e-17 Score=156.82 Aligned_cols=174 Identities=21% Similarity=0.263 Sum_probs=101.8
Q ss_pred CCCCCCccEEEEEeeCCCCCCcc-cCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCC
Q 044605 119 LKPHYGLKELKVQNYGGTKFPAW-LGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQ 195 (405)
Q Consensus 119 l~~~~~L~~L~l~~~~~~~lp~~-~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 195 (405)
+..+++|+.|++.++....+|.. +. .+++|+.|++++|. ++.++. +..+++|++|++.++..+..++. .
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-----~ 190 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFE--YLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISE-----G 190 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSS--SCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT-----T
T ss_pred ccCcccCCEEECCCCcCCccChhhhc--ccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccCh-----h
Confidence 44456677777777665555543 33 56777777777766 555553 66677777777777666666654 1
Q ss_pred CCCCCCcccEEeeccCccccccCCC--CCCcccEEEEeccCC--c-cccCCCCCCcceEEEcCcCCccccccccccCCCC
Q 044605 196 AAKGFPCLRELSIINCSKLKGRLPQ--HFSSLERIVIMSCEQ--L-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFD 270 (405)
Q Consensus 196 ~~~~~~~L~~L~l~~~~~l~~~l~~--~~~~L~~L~l~~c~~--l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 270 (405)
....+++|++|+++++ .++ .+|. .+++|+.|+++++.- + +..|..+++|+.|++++|..
T Consensus 191 ~~~~l~~L~~L~L~~n-~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-------------- 254 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMC-NIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-------------- 254 (452)
T ss_dssp TTTTCTTCCEEECTTS-CCS-SCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC--------------
T ss_pred hccCCCCCCEEECCCC-ccc-ccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC--------------
Confidence 1223667777777664 333 2332 344455555544321 1 33444444555555444422
Q ss_pred CCCCCeeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605 271 SSNPGPEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP 345 (405)
Q Consensus 271 ~l~~Ll~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~ 345 (405)
+.+ |..+..+++|+.|++++|+++.++...| ..+++|++|++++|+
T Consensus 255 -----------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 255 -----------------------SLIERNAFDGLASLVELNLAHNNLSSLPHDLF------TPLRYLVELHLHHNP 301 (452)
T ss_dssp -----------------------CEECTTTTTTCTTCCEEECCSSCCSCCCTTSS------TTCTTCCEEECCSSC
T ss_pred -----------------------ceECHHHhcCCCCCCEEECCCCcCCccChHHh------ccccCCCEEEccCCC
Confidence 222 3456677778888887777777776543 566777778777765
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.72 E-value=2e-16 Score=154.43 Aligned_cols=176 Identities=18% Similarity=0.136 Sum_probs=102.3
Q ss_pred cCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCC
Q 044605 118 MLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAA 197 (405)
Q Consensus 118 ~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 197 (405)
.+..+++|+.|++.+|....+|.. .++|+.|++++|. +..+|.++.+++|++|++.++. +..++.
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~l~~N~-l~~l~~-------- 254 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNI-LEELPELQNLPFLTTIYADNNL-LKTLPD-------- 254 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSC-CSSCCS--------
T ss_pred cccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCc-CCcccccCCCCCCCEEECCCCc-CCcccc--------
Confidence 356677777777777766555542 3567777877775 5577777777888888877653 333322
Q ss_pred CCCCcccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCC-CCCcceEEEcCcCCccccccccccCCCCCC-CCC
Q 044605 198 KGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTT-LPLLCELEIDGFGEVAWINRPVEAGIFDSS-NPG 275 (405)
Q Consensus 198 ~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l-~~L 275 (405)
.+++|++|+++++ .++ .+|..+++|+.|++++|. + ..++. .++|+.|++++|.... ++ .+ ++|
T Consensus 255 -~~~~L~~L~l~~N-~l~-~l~~~~~~L~~L~ls~N~-l-~~l~~~~~~L~~L~l~~N~l~~-----i~-----~~~~~L 319 (454)
T 1jl5_A 255 -LPPSLEALNVRDN-YLT-DLPELPQSLTFLDVSENI-F-SGLSELPPNLYYLNASSNEIRS-----LC-----DLPPSL 319 (454)
T ss_dssp -CCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSC-C-SEESCCCTTCCEEECCSSCCSE-----EC-----CCCTTC
T ss_pred -cccccCEEECCCC-ccc-ccCcccCcCCEEECcCCc-c-CcccCcCCcCCEEECcCCcCCc-----cc-----CCcCcC
Confidence 2467777777765 444 355556777777777653 1 11111 2566777776664331 11 11 233
Q ss_pred --eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605 276 --PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI 346 (405)
Q Consensus 276 --l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~ 346 (405)
++++++ .++.+|.. +++|+.|++++|+++.+|. .+++|++|++++|..
T Consensus 320 ~~L~Ls~N----------~l~~lp~~---~~~L~~L~L~~N~l~~lp~----------~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 320 EELNVSNN----------KLIELPAL---PPRLERLIASFNHLAEVPE----------LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CEEECCSS----------CCSCCCCC---CTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCC
T ss_pred CEEECCCC----------cccccccc---CCcCCEEECCCCccccccc----------hhhhccEEECCCCCC
Confidence 455544 33444442 4666666666666666553 235666666666543
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=1.1e-16 Score=155.81 Aligned_cols=177 Identities=23% Similarity=0.338 Sum_probs=102.5
Q ss_pred CCCCCCccEEEEEeeCCCCCCcc-cCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCC
Q 044605 119 LKPHYGLKELKVQNYGGTKFPAW-LGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQ 195 (405)
Q Consensus 119 l~~~~~L~~L~l~~~~~~~lp~~-~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 195 (405)
+..+++|+.|++.+|....+|.. +. .+++|+.|++++|. ++.++. +..+++|++|++.++..+..++. .
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-----~ 179 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTIPNGAFV--YLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISE-----G 179 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSCCTTTSC--SCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT-----T
T ss_pred ccCCccCCEEECCCCcCCeeCHhHhh--ccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCc-----c
Confidence 34456677777777665555542 33 56777777777766 555553 66677777777777666666644 1
Q ss_pred CCCCCCcccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC
Q 044605 196 AAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG 275 (405)
Q Consensus 196 ~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L 275 (405)
....+++|++|+++++ .++ .+|. +..+++|+.|++++|... .++...|..+++|
T Consensus 180 ~~~~l~~L~~L~L~~n-~l~-~~~~-------------------~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L 233 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMC-NLR-EIPN-------------------LTPLIKLDELDLSGNHLS-----AIRPGSFQGLMHL 233 (440)
T ss_dssp TTTTCSSCCEEECTTS-CCS-SCCC-------------------CTTCSSCCEEECTTSCCC-----EECTTTTTTCTTC
T ss_pred hhhcccccCeecCCCC-cCc-cccc-------------------cCCCcccCEEECCCCccC-----ccChhhhccCccC
Confidence 1223667777777664 333 2332 333444555555544322 2333344444444
Q ss_pred --eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605 276 --PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP 345 (405)
Q Consensus 276 --l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~ 345 (405)
++++++ .++.+ +..+.++++|+.|++++|+++.++...| ..+++|+.|++++|+
T Consensus 234 ~~L~L~~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 234 QKLWMIQS----------QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF------TPLHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTC----------CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT------SSCTTCCEEECCSSC
T ss_pred CEEECCCC----------ceeEEChhhhcCCCCCCEEECCCCCCCccChhHh------ccccCCCEEEcCCCC
Confidence 444444 22323 3356677778888887777777776543 566777778777765
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=6e-17 Score=151.46 Aligned_cols=208 Identities=22% Similarity=0.298 Sum_probs=129.5
Q ss_pred eeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhcccccccCC
Q 044605 26 VIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSDS 105 (405)
Q Consensus 26 ~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~~~ 105 (405)
..+++|++++|.++.+|..++++.+|++|++....-. ..+..++.+.+|+ +|.+.... +..
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~-~L~Ls~n~-l~~--------------- 141 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLE-TLTLARNP-LRA--------------- 141 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCS-EEEEESCC-CCC---------------
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCC-EEECCCCc-ccc---------------
Confidence 5777888888888888888888888888875433221 3334566677776 77765422 111
Q ss_pred hhhHHHHHHHhccCCCCCCccEEEEEeeC-CCCCCcccCC-------CCCCCccEEEEEcCCCCCcCCC-CCCCCCccEE
Q 044605 106 REVAEIQTRVLEMLKPHYGLKELKVQNYG-GTKFPAWLGQ-------SSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNL 176 (405)
Q Consensus 106 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~lp~~~~~-------~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L 176 (405)
+...+..+++|+.|++.+|. ...+|..+.. ..+++|+.|++++|. ++.+|. ++.+++|++|
T Consensus 142 ---------lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 142 ---------LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL 211 (328)
T ss_dssp ---------CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEE
T ss_pred ---------CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEE
Confidence 12234456677777777754 4555654430 126777777777775 456654 6677777777
Q ss_pred eecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccCC---ccccCCCCCCcceEE
Q 044605 177 VIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCEQ---LLVSCTTLPLLCELE 250 (405)
Q Consensus 177 ~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~~---l~~~l~~l~~L~~L~ 250 (405)
++.++. +..++. ....+++|++|++++|.... .+|. .+++|+.|++++|.. +|..+..+++|+.|+
T Consensus 212 ~L~~N~-l~~l~~------~l~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 212 KIRNSP-LSALGP------AIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp EEESSC-CCCCCG------GGGGCTTCCEEECTTCTTCC-BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred EccCCC-CCcCch------hhccCCCCCEEECcCCcchh-hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence 777654 333433 12236777777777765444 4553 467777777777653 355666677788888
Q ss_pred EcCcCCccccccccccCCCCCCCCC
Q 044605 251 IDGFGEVAWINRPVEAGIFDSSNPG 275 (405)
Q Consensus 251 l~~~~~l~~~~~~~~~~~~~~l~~L 275 (405)
+++|+.++ .+|. .+..++.+
T Consensus 284 L~~n~~~~----~iP~-~l~~L~~L 303 (328)
T 4fcg_A 284 LRGCVNLS----RLPS-LIAQLPAN 303 (328)
T ss_dssp CTTCTTCC----CCCG-GGGGSCTT
T ss_pred CCCCCchh----hccH-HHhhccCc
Confidence 88777776 5554 56666666
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=4.9e-15 Score=149.44 Aligned_cols=253 Identities=23% Similarity=0.151 Sum_probs=167.1
Q ss_pred eeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhcccccccC
Q 044605 25 FVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSD 104 (405)
Q Consensus 25 ~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~~ 104 (405)
...+++|++++|.++.+|..+. .+|++|++.... ...+.. .+.+|+ .|.+.... +..+
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~---l~~lp~--~l~~L~-~L~Ls~N~-l~~l------------- 96 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN---LTSLPA--LPPELR-TLEVSGNQ-LTSL------------- 96 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC---CSCCCC--CCTTCC-EEEECSCC-CSCC-------------
T ss_pred CCCCcEEEecCCCcCccChhhC--CCCcEEEecCCC---CCCCCC--cCCCCC-EEEcCCCc-CCcC-------------
Confidence 3468899999999999998876 788888753322 112222 345566 66665422 1110
Q ss_pred ChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCC
Q 044605 105 SREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRM 184 (405)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l 184 (405)
.. .+++|+.|++.+|....+|. .+++|+.|++++|. ++.+|.. +++|++|+++++. +
T Consensus 97 -----------p~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~-l~~lp~~--l~~L~~L~Ls~N~-l 153 (622)
T 3g06_A 97 -----------PV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDNQ-L 153 (622)
T ss_dssp -----------CC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSC-C
T ss_pred -----------CC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCC-CCcCCCC--CCCCCEEECcCCc-C
Confidence 11 35788888888887777765 46788888888876 6667652 5888888888763 4
Q ss_pred eeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcccEEEEeccCCccccC-CCCCCcceEEEcCcCCccccccc
Q 044605 185 AKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSC-TTLPLLCELEIDGFGEVAWINRP 263 (405)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l-~~l~~L~~L~l~~~~~l~~~~~~ 263 (405)
..++. .+++|+.|+++++ .++ .+|..+++|+.|++++|. + ..+ ..+++|+.|++++|... .
T Consensus 154 ~~l~~---------~~~~L~~L~L~~N-~l~-~l~~~~~~L~~L~Ls~N~-l-~~l~~~~~~L~~L~L~~N~l~-----~ 215 (622)
T 3g06_A 154 ASLPA---------LPSELCKLWAYNN-QLT-SLPMLPSGLQELSVSDNQ-L-ASLPTLPSELYKLWAYNNRLT-----S 215 (622)
T ss_dssp SCCCC---------CCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSC-C-SCCCCCCTTCCEEECCSSCCS-----S
T ss_pred CCcCC---------ccCCCCEEECCCC-CCC-CCcccCCCCcEEECCCCC-C-CCCCCccchhhEEECcCCccc-----c
Confidence 44432 3578888888774 555 366677888888887754 2 112 12468888888877543 2
Q ss_pred cccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEee
Q 044605 264 VEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLEL 341 (405)
Q Consensus 264 ~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l 341 (405)
++. . +++| +++++| .++.+| ..+++|+.|++++|.++.+|. .+++|+.|++
T Consensus 216 l~~-~---~~~L~~L~Ls~N----------~L~~lp---~~l~~L~~L~Ls~N~L~~lp~----------~~~~L~~L~L 268 (622)
T 3g06_A 216 LPA-L---PSGLKELIVSGN----------RLTSLP---VLPSELKELMVSGNRLTSLPM----------LPSGLLSLSV 268 (622)
T ss_dssp CCC-C---CTTCCEEECCSS----------CCSCCC---CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEEC
T ss_pred cCC-C---CCCCCEEEccCC----------ccCcCC---CCCCcCcEEECCCCCCCcCCc----------ccccCcEEeC
Confidence 332 1 2345 666665 445566 456788888888888877764 3467888888
Q ss_pred ecCCCCcccCCC-CCcCCccEEeecCCc
Q 044605 342 SRCPILKSFPEN-GLLPSVVYLSIYLCP 368 (405)
Q Consensus 342 ~~c~~l~~l~~~-~~~~~L~~L~i~~c~ 368 (405)
++| .++.+|.. ..+++|+.|++++++
T Consensus 269 s~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 269 YRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 876 45677765 455688888888875
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=1.2e-16 Score=148.58 Aligned_cols=211 Identities=11% Similarity=0.034 Sum_probs=162.9
Q ss_pred CCCCCccEEEEEeeCCCCCC-cccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCC
Q 044605 120 KPHYGLKELKVQNYGGTKFP-AWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAK 198 (405)
Q Consensus 120 ~~~~~L~~L~l~~~~~~~lp-~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 198 (405)
..+++|+.|++.++....++ ..+. .+++|+.|++++|. ++.++++..+++|++|+++++. +..++.
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~-l~~l~~--------- 97 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLV--------- 97 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHT--TCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSE-EEEEEE---------
T ss_pred ccCCCCCEEECcCCccCcCCHHHhh--CCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCc-cccccC---------
Confidence 34678999999998876665 4565 78999999999987 6656668999999999999874 666655
Q ss_pred CCCcccEEeeccCccccccCCCCCCcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccccCCC-CCCCC
Q 044605 199 GFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIF-DSSNP 274 (405)
Q Consensus 199 ~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~-~~l~~ 274 (405)
.++|++|+++++ .+.+..+..+++|+.|+++++. .+ +..+..+++|++|++++|.... ++...+ ..+++
T Consensus 98 -~~~L~~L~l~~n-~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~~l~~ 170 (317)
T 3o53_A 98 -GPSIETLHAANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-----VNFAELAASSDT 170 (317)
T ss_dssp -CTTCCEEECCSS-CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE-----EEGGGGGGGTTT
T ss_pred -CCCcCEEECCCC-ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc-----ccHHHHhhccCc
Confidence 689999999986 4554455578999999999875 23 4467778999999999987653 333333 46677
Q ss_pred C--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCC
Q 044605 275 G--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPE 352 (405)
Q Consensus 275 L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~ 352 (405)
| +++++| .++.+|. ...+++|+.|++++|+++.+|.. +..+++|++|++++| .++.+|.
T Consensus 171 L~~L~L~~N----------~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~-------~~~l~~L~~L~L~~N-~l~~l~~ 231 (317)
T 3o53_A 171 LEHLNLQYN----------FIYDVKG-QVVFAKLKTLDLSSNKLAFMGPE-------FQSAAGVTWISLRNN-KLVLIEK 231 (317)
T ss_dssp CCEEECTTS----------CCCEEEC-CCCCTTCCEEECCSSCCCEECGG-------GGGGTTCSEEECTTS-CCCEECT
T ss_pred CCEEECCCC----------cCccccc-ccccccCCEEECCCCcCCcchhh-------hcccCcccEEECcCC-cccchhh
Confidence 7 888887 4455543 33589999999999999988876 578889999999997 5677876
Q ss_pred C-CCcCCccEEeecCCcc
Q 044605 353 N-GLLPSVVYLSIYLCPD 369 (405)
Q Consensus 353 ~-~~~~~L~~L~i~~c~~ 369 (405)
. ..+++|+.|++++++-
T Consensus 232 ~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp TCCCCTTCCEEECTTCCC
T ss_pred HhhcCCCCCEEEccCCCc
Confidence 6 5567999999998863
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=6.2e-16 Score=143.03 Aligned_cols=217 Identities=18% Similarity=0.131 Sum_probs=163.1
Q ss_pred CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcC----CCCCCCCCccEEeecCCCCCeeeCCCCCCCCCC
Q 044605 122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSL----PSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAA 197 (405)
Q Consensus 122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l----~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 197 (405)
.++|+.|++.++....+|.... ..+++|+.|++++|. ++.+ +.+..+++|++|+++++. +..++. ..
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~------~~ 97 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSS------NF 97 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEE------EE
T ss_pred CCCCCEEECCCCccCccCHhHh-hccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChh------hc
Confidence 3679999999988878877542 278999999999887 5433 235568999999999874 445544 12
Q ss_pred CCCCcccEEeeccCccccccCC----CCCCcccEEEEeccCC---ccccCCCCCCcceEEEcCcCCccccccccccCCCC
Q 044605 198 KGFPCLRELSIINCSKLKGRLP----QHFSSLERIVIMSCEQ---LLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFD 270 (405)
Q Consensus 198 ~~~~~L~~L~l~~~~~l~~~l~----~~~~~L~~L~l~~c~~---l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 270 (405)
..+++|++|+++++ .+++..+ ..+++|+.|++++|.- .+..+..+++|++|++++|.... ...+..+.
T Consensus 98 ~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~ 172 (306)
T 2z66_A 98 LGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----NFLPDIFT 172 (306)
T ss_dssp ETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG----GEECSCCT
T ss_pred CCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc----ccchhHHh
Confidence 23899999999986 4443222 2678999999998752 25567789999999999986543 34456788
Q ss_pred CCCCC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCC
Q 044605 271 SSNPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPIL 347 (405)
Q Consensus 271 ~l~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l 347 (405)
.+++| +++++| .++.+ |..+..+++|+.|++++|.++.++... +..+++|++|++++|...
T Consensus 173 ~l~~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 173 ELRNLTFLDLSQC----------QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP------YKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp TCTTCCEEECTTS----------CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG------GTTCTTCCEEECTTSCCC
T ss_pred hCcCCCEEECCCC----------CcCCcCHHHhcCCCCCCEEECCCCccCccChhh------ccCcccCCEeECCCCCCc
Confidence 88888 888888 44555 567889999999999999999887644 378899999999998655
Q ss_pred cccCCC--CCcCCccEEeecCCc
Q 044605 348 KSFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 348 ~~l~~~--~~~~~L~~L~i~~c~ 368 (405)
+..+.. ..+++|++|++++++
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCC
T ss_pred ccCHHHHHhhhccCCEEEccCCC
Confidence 555544 344699999999975
No 52
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=2.9e-16 Score=154.74 Aligned_cols=214 Identities=11% Similarity=0.021 Sum_probs=167.6
Q ss_pred CCCCCCccEEEEEeeCCCCCC-cccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCC
Q 044605 119 LKPHYGLKELKVQNYGGTKFP-AWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAA 197 (405)
Q Consensus 119 l~~~~~L~~L~l~~~~~~~lp-~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 197 (405)
...+++|+.|++.++....++ ..+. .+++|+.|++++|. ++..++++.+++|++|+++++ .+..++.
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N-~l~~l~~-------- 97 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNN-YVQELLV-------- 97 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGT--TCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSS-EEEEEEE--------
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHh--CCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCC-cCCCCCC--------
Confidence 445678999999998876664 5666 79999999999988 665556999999999999987 4666655
Q ss_pred CCCCcccEEeeccCccccccCCCCCCcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCC
Q 044605 198 KGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNP 274 (405)
Q Consensus 198 ~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~ 274 (405)
.++|++|+++++ .+.+..+..+++|+.|++++|. .+ +..+..+++|++|++++|.... ..+......+++
T Consensus 98 --~~~L~~L~L~~N-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~l~~~l~~ 170 (487)
T 3oja_A 98 --GPSIETLHAANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----VNFAELAASSDT 170 (487)
T ss_dssp --CTTCCEEECCSS-CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE----EEGGGGGGGTTT
T ss_pred --CCCcCEEECcCC-cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC----cChHHHhhhCCc
Confidence 589999999996 5554455678999999999875 22 5567789999999999997664 333333346778
Q ss_pred C--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCC
Q 044605 275 G--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPE 352 (405)
Q Consensus 275 L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~ 352 (405)
| |++++| .++.+|. ...+++|+.|++++|.++.+|.. +..+++|+.|++++|. ++.+|.
T Consensus 171 L~~L~Ls~N----------~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~-------~~~l~~L~~L~Ls~N~-l~~lp~ 231 (487)
T 3oja_A 171 LEHLNLQYN----------FIYDVKG-QVVFAKLKTLDLSSNKLAFMGPE-------FQSAAGVTWISLRNNK-LVLIEK 231 (487)
T ss_dssp CCEEECTTS----------CCCEEEC-CCCCTTCCEEECCSSCCCEECGG-------GGGGTTCSEEECTTSC-CCEECT
T ss_pred ccEEecCCC----------ccccccc-cccCCCCCEEECCCCCCCCCCHh-------HcCCCCccEEEecCCc-Ccccch
Confidence 8 888888 3455544 34699999999999999998876 5788999999999964 667877
Q ss_pred C-CCcCCccEEeecCCcch
Q 044605 353 N-GLLPSVVYLSIYLCPDL 370 (405)
Q Consensus 353 ~-~~~~~L~~L~i~~c~~l 370 (405)
. ..+++|+.|++++++-.
T Consensus 232 ~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 232 ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TCCCCTTCCEEECTTCCBC
T ss_pred hhccCCCCCEEEcCCCCCc
Confidence 6 55679999999998643
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=4.4e-15 Score=144.47 Aligned_cols=212 Identities=16% Similarity=0.170 Sum_probs=147.8
Q ss_pred CCccEEEEEeeCCCCCC-cccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605 123 YGLKELKVQNYGGTKFP-AWLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG 199 (405)
Q Consensus 123 ~~L~~L~l~~~~~~~lp-~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 199 (405)
.+++.|++.++....++ ..+. .+++|+.|++++|. +..++ .+..+++|++|++.++ .+..++. .....
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~-----~~~~~ 134 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFK--HLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTTIPN-----GAFVY 134 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTS--SCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-CCSSCCT-----TTSCS
T ss_pred CCCcEEEccCCcCCeeCHHHhh--CCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC-cCCeeCH-----hHhhc
Confidence 56788888877665554 3344 67888888888876 55554 3777888888888775 3444433 11224
Q ss_pred CCcccEEeeccCccccccCC---CCCCcccEEEEeccCCc----cccCCCCCCcceEEEcCcCCccccccccccCCCCCC
Q 044605 200 FPCLRELSIINCSKLKGRLP---QHFSSLERIVIMSCEQL----LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSS 272 (405)
Q Consensus 200 ~~~L~~L~l~~~~~l~~~l~---~~~~~L~~L~l~~c~~l----~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l 272 (405)
+++|++|+++++ .+....+ ..+++|+.|++.+|..+ +..|..+++|++|++++|... .++ .+..+
T Consensus 135 l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-----~~~--~~~~l 206 (440)
T 3zyj_A 135 LSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-----EIP--NLTPL 206 (440)
T ss_dssp CSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-----SCC--CCTTC
T ss_pred cccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-----ccc--ccCCC
Confidence 788888888875 3442222 15778888888876644 235667888888888887544 333 35666
Q ss_pred CCC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcc
Q 044605 273 NPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKS 349 (405)
Q Consensus 273 ~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~ 349 (405)
.+| |+++++ .++.+ |..+.++++|+.|++++|+++.++...| .++++|++|++++| .++.
T Consensus 207 ~~L~~L~Ls~N----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~N-~l~~ 269 (440)
T 3zyj_A 207 IKLDELDLSGN----------HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF------DNLQSLVEINLAHN-NLTL 269 (440)
T ss_dssp SSCCEEECTTS----------CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS------TTCTTCCEEECTTS-CCCC
T ss_pred cccCEEECCCC----------ccCccChhhhccCccCCEEECCCCceeEEChhhh------cCCCCCCEEECCCC-CCCc
Confidence 666 777776 44544 5678899999999999999988876654 78889999999986 5666
Q ss_pred cCCC--CCcCCccEEeecCCc
Q 044605 350 FPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 350 l~~~--~~~~~L~~L~i~~c~ 368 (405)
++.. ..+++|+.|+++++|
T Consensus 270 ~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 270 LPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCTTTTSSCTTCCEEECCSSC
T ss_pred cChhHhccccCCCEEEcCCCC
Confidence 7654 445789999999876
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.66 E-value=3e-16 Score=145.70 Aligned_cols=238 Identities=16% Similarity=0.140 Sum_probs=172.6
Q ss_pred CCccEEEEEeeCCC---CCCcccCCCCCCCccEEEEEc-CCCCCcCCC-CCCCCCccEEeecCCCCCeeeCCCCCCCCCC
Q 044605 123 YGLKELKVQNYGGT---KFPAWLGQSSFENLVVLRFRN-CNQCTSLPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAA 197 (405)
Q Consensus 123 ~~L~~L~l~~~~~~---~lp~~~~~~~l~~L~~L~l~~-~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 197 (405)
.+++.|++.++... .+|..+. .+++|+.|++++ +.....+|. ++.+++|++|++.++.-...++. ..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~--~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~------~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD------FL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG------GG
T ss_pred ceEEEEECCCCCccCCcccChhHh--CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH------HH
Confidence 57899999987754 5787777 799999999996 553445664 88899999999988754445554 12
Q ss_pred CCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC---CccccCCCCC-CcceEEEcCcCCccccccccccCCCC
Q 044605 198 KGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE---QLLVSCTTLP-LLCELEIDGFGEVAWINRPVEAGIFD 270 (405)
Q Consensus 198 ~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~---~l~~~l~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~ 270 (405)
..+++|++|+++++ .+.+.+|. .+++|++|+++++. .+|..+..++ +|+.|++++|...+ .+ +..+.
T Consensus 122 ~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~----~~-~~~~~ 195 (313)
T 1ogq_A 122 SQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG----KI-PPTFA 195 (313)
T ss_dssp GGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE----EC-CGGGG
T ss_pred hCCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec----cC-ChHHh
Confidence 24899999999986 45545664 68899999999875 3467787887 99999999986653 22 33555
Q ss_pred CCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCc
Q 044605 271 SSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILK 348 (405)
Q Consensus 271 ~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~ 348 (405)
.+. | ++++++... ...|..+..+++|+.|++++|.++..+.. +..+++|++|++++|...+
T Consensus 196 ~l~-L~~L~Ls~N~l~---------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLE---------GDASVLFGSDKNTQKIHLAKNSLAFDLGK-------VGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp GCC-CSEEECCSSEEE---------ECCGGGCCTTSCCSEEECCSSEECCBGGG-------CCCCTTCCEEECCSSCCEE
T ss_pred CCc-ccEEECcCCccc---------CcCCHHHhcCCCCCEEECCCCceeeecCc-------ccccCCCCEEECcCCcccC
Confidence 554 6 788777322 24567888999999999999998854443 4678999999999987655
Q ss_pred ccCCC-CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceE
Q 044605 349 SFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKL 397 (405)
Q Consensus 349 ~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~ 397 (405)
.+|.. ..+++|++|++++++ +....+ .+..+.+++.+.+.++.
T Consensus 259 ~~p~~l~~l~~L~~L~Ls~N~-l~~~ip-----~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 259 TLPQGLTQLKFLHSLNVSFNN-LCGEIP-----QGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSE-EEEECC-----CSTTGGGSCGGGTCSSS
T ss_pred cCChHHhcCcCCCEEECcCCc-ccccCC-----CCccccccChHHhcCCC
Confidence 77765 556799999999984 221111 12445666666666654
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=3.4e-16 Score=144.74 Aligned_cols=172 Identities=20% Similarity=0.188 Sum_probs=104.5
Q ss_pred CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC---CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCC
Q 044605 122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP---SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAK 198 (405)
Q Consensus 122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~---~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 198 (405)
+++|+.|++.++....+|..+. .+++|+.|++++|. ++.++ .+..+++|++|++.++. +..+.. ....
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-----~~~~ 147 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN-----GIFN 147 (306)
T ss_dssp CSCCCEEECCSCSEEEEEEEEE--TCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEECST-----TTTT
T ss_pred ccccCEEECCCCccccChhhcC--CCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCccch-----hhcc
Confidence 4667777777776555666555 67888888887776 44443 36677888888887764 333222 0122
Q ss_pred CCCcccEEeeccCccccc-cCCC---CCCcccEEEEeccCC--c-cccCCCCCCcceEEEcCcCCccccccccccCCCCC
Q 044605 199 GFPCLRELSIINCSKLKG-RLPQ---HFSSLERIVIMSCEQ--L-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDS 271 (405)
Q Consensus 199 ~~~~L~~L~l~~~~~l~~-~l~~---~~~~L~~L~l~~c~~--l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 271 (405)
.+++|++|+++++. +.+ .+|. .+++|+.|++++|.- + +..+..+++|++|++++|.
T Consensus 148 ~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~---------------- 210 (306)
T 2z66_A 148 GLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN---------------- 210 (306)
T ss_dssp TCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC----------------
T ss_pred cCcCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc----------------
Confidence 36777777777753 322 2222 344555555554421 1 2344445555555555442
Q ss_pred CCCCeeecCCCCccEEecCCCCcccc-cccCCCCCccEEEEeCCcccccccCCCCCcccCCCC-CCcCEEeeecCCC
Q 044605 272 SNPGPEKSRTEVLPWEIGSPDQESLP-EGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNL-TSLERLELSRCPI 346 (405)
Q Consensus 272 l~~Ll~l~~~~~l~l~i~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l-~~L~~L~l~~c~~ 346 (405)
++.++ ..+..+++|+.|++++|.++.++...+ ..+ ++|++|++++|+.
T Consensus 211 ---------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 211 ---------------------FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL------QHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ---------------------CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC------CCCCTTCCEEECTTCCE
T ss_pred ---------------------cCccChhhccCcccCCEeECCCCCCcccCHHHH------HhhhccCCEEEccCCCe
Confidence 23333 256788999999999998887665443 556 4899999998764
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=3.8e-15 Score=136.24 Aligned_cols=209 Identities=17% Similarity=0.175 Sum_probs=143.5
Q ss_pred EEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCccc
Q 044605 127 ELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLR 204 (405)
Q Consensus 127 ~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~ 204 (405)
.++..+.....+|.. ..++|++|+++++. ++.++. +..+++|++|++.++. +..+.. .....+++|+
T Consensus 15 ~~~c~~~~l~~ip~~----~~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-----~~~~~l~~L~ 83 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVG----IPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNV-LARIDA-----AAFTGLALLE 83 (285)
T ss_dssp EEECCSSCCSSCCTT----CCTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECT-----TTTTTCTTCC
T ss_pred EEEcCcCCcccCCcC----CCCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCc-cceeCH-----hhcCCccCCC
Confidence 344444444455543 24678888888776 565553 7778888888888763 444422 0122378888
Q ss_pred EEeeccCccccccCCC---CCCcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--e
Q 044605 205 ELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--P 276 (405)
Q Consensus 205 ~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l 276 (405)
+|+++++..+....+. .+++|+.|+++++. .+ +..+..+++|++|++++|... .++...+..+++| +
T Consensus 84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-----ALPDDTFRDLGNLTHL 158 (285)
T ss_dssp EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEE
T ss_pred EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-----ccCHhHhccCCCccEE
Confidence 8888886545533232 56788888888764 22 455777888999998887654 4565567777777 7
Q ss_pred eecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--
Q 044605 277 EKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-- 353 (405)
Q Consensus 277 ~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-- 353 (405)
+++++ +++.+|. .+..+++|+.|++++|.++.++... +.++++|++|++++|. ++.++..
T Consensus 159 ~l~~n----------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~l~~n~-l~~~~~~~~ 221 (285)
T 1ozn_A 159 FLHGN----------RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA------FRDLGRLMTLYLFANN-LSALPTEAL 221 (285)
T ss_dssp ECCSS----------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTT------TTTCTTCCEEECCSSC-CSCCCHHHH
T ss_pred ECCCC----------cccccCHHHhcCccccCEEECCCCcccccCHhH------ccCcccccEeeCCCCc-CCcCCHHHc
Confidence 77776 4456665 4778999999999998888874443 4778899999999874 5556533
Q ss_pred CCcCCccEEeecCCc
Q 044605 354 GLLPSVVYLSIYLCP 368 (405)
Q Consensus 354 ~~~~~L~~L~i~~c~ 368 (405)
...++|++|+++++|
T Consensus 222 ~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 222 APLRALQYLRLNDNP 236 (285)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccCcccCEEeccCCC
Confidence 455789999999875
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=7.7e-15 Score=143.27 Aligned_cols=211 Identities=19% Similarity=0.181 Sum_probs=154.5
Q ss_pred CCccEEEEEeeCCCCC-CcccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605 123 YGLKELKVQNYGGTKF-PAWLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG 199 (405)
Q Consensus 123 ~~L~~L~l~~~~~~~l-p~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 199 (405)
++++.|++.++....+ |..+. .+++|+.|++++|. +..++ .+..+++|++|++.++. +..++. .....
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~~~ 145 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFR--HLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW-LTVIPS-----GAFEY 145 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTT--TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSBCCT-----TTSSS
T ss_pred CCccEEECcCCcCceECHHHcC--CCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCc-CCccCh-----hhhcc
Confidence 6788888888776555 34454 68889999998886 55554 37788899999988764 445543 11224
Q ss_pred CCcccEEeeccCccccccCCC----CCCcccEEEEeccCCc----cccCCCCCCcceEEEcCcCCccccccccccCCCCC
Q 044605 200 FPCLRELSIINCSKLKGRLPQ----HFSSLERIVIMSCEQL----LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDS 271 (405)
Q Consensus 200 ~~~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c~~l----~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 271 (405)
+++|++|+++++ .+.. ++. .+++|+.|++++|..+ +..|..+++|+.|++++|... .++ .+..
T Consensus 146 l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-----~~~--~~~~ 216 (452)
T 3zyi_A 146 LSKLRELWLRNN-PIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-----DMP--NLTP 216 (452)
T ss_dssp CTTCCEEECCSC-CCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-----SCC--CCTT
T ss_pred cCCCCEEECCCC-Ccce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-----ccc--cccc
Confidence 888999999885 3442 332 5788899998887655 235677889999999888654 232 4666
Q ss_pred CCCC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCc
Q 044605 272 SNPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILK 348 (405)
Q Consensus 272 l~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~ 348 (405)
+.+| |+++++ .++.+ |..+.++++|+.|++++|+++.++...| .++++|++|++++| .++
T Consensus 217 l~~L~~L~Ls~N----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~N-~l~ 279 (452)
T 3zyi_A 217 LVGLEELEMSGN----------HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF------DGLASLVELNLAHN-NLS 279 (452)
T ss_dssp CTTCCEEECTTS----------CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT------TTCTTCCEEECCSS-CCS
T ss_pred cccccEEECcCC----------cCcccCcccccCccCCCEEEeCCCcCceECHHHh------cCCCCCCEEECCCC-cCC
Confidence 6677 778777 44444 6678899999999999999998876654 78899999999997 566
Q ss_pred ccCCC--CCcCCccEEeecCCc
Q 044605 349 SFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 349 ~l~~~--~~~~~L~~L~i~~c~ 368 (405)
.++.. ..+++|+.|++.++|
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSC
T ss_pred ccChHHhccccCCCEEEccCCC
Confidence 77654 445799999999876
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.65 E-value=6.3e-15 Score=148.62 Aligned_cols=247 Identities=20% Similarity=0.119 Sum_probs=176.6
Q ss_pred cccccCchhhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhh
Q 044605 14 METINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAED 93 (405)
Q Consensus 14 l~~l~~~~~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~ 93 (405)
+..+|..++ ++|++|++++|.++.+|. .+.+|++|++.... ...+.. .+.+|+ .|.+.... +...
T Consensus 52 L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~---l~~lp~--~l~~L~-~L~Ls~N~-l~~l-- 116 (622)
T 3g06_A 52 LTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ---LTSLPV--LPPGLL-ELSIFSNP-LTHL-- 116 (622)
T ss_dssp CSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC---CSCCCC--CCTTCC-EEEECSCC-CCCC--
T ss_pred cCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc---CCcCCC--CCCCCC-EEECcCCc-CCCC--
Confidence 456666554 689999999999999998 57889998753332 122222 455666 77775421 1110
Q ss_pred hhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCc
Q 044605 94 AKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLL 173 (405)
Q Consensus 94 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L 173 (405)
.. .+.+|+.|++.+|....+|. .+++|+.|++++|. ++.+|. .+++|
T Consensus 117 ----------------------~~---~l~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~-l~~l~~--~~~~L 163 (622)
T 3g06_A 117 ----------------------PA---LPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQ-LASLPA--LPSEL 163 (622)
T ss_dssp ----------------------CC---CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSC-CSCCCC--CCTTC
T ss_pred ----------------------CC---CCCCcCEEECCCCCCCcCCC-----CCCCCCEEECcCCc-CCCcCC--ccCCC
Confidence 00 35789999999988777776 35889999999986 666664 35789
Q ss_pred cEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcccEEEEeccCCccccC-CCCCCcceEEEc
Q 044605 174 KNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSC-TTLPLLCELEID 252 (405)
Q Consensus 174 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l-~~l~~L~~L~l~ 252 (405)
+.|++.++. +..++. .+++|+.|+++++ .++ .+|..+++|+.|++.+|.-- .+ ..+++|+.|+++
T Consensus 164 ~~L~L~~N~-l~~l~~---------~~~~L~~L~Ls~N-~l~-~l~~~~~~L~~L~L~~N~l~--~l~~~~~~L~~L~Ls 229 (622)
T 3g06_A 164 CKLWAYNNQ-LTSLPM---------LPSGLQELSVSDN-QLA-SLPTLPSELYKLWAYNNRLT--SLPALPSGLKELIVS 229 (622)
T ss_dssp CEEECCSSC-CSCCCC---------CCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCS--SCCCCCTTCCEEECC
T ss_pred CEEECCCCC-CCCCcc---------cCCCCcEEECCCC-CCC-CCCCccchhhEEECcCCccc--ccCCCCCCCCEEEcc
Confidence 999998764 444432 4789999999985 566 47777899999999886421 22 235889999999
Q ss_pred CcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccC
Q 044605 253 GFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFV 330 (405)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l 330 (405)
+|... .++ ..+++| |++++| .++.+|. .+++|+.|++++|.++.+|.. +
T Consensus 230 ~N~L~-----~lp----~~l~~L~~L~Ls~N----------~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~-------l 280 (622)
T 3g06_A 230 GNRLT-----SLP----VLPSELKELMVSGN----------RLTSLPM---LPSGLLSLSVYRNQLTRLPES-------L 280 (622)
T ss_dssp SSCCS-----CCC----CCCTTCCEEECCSS----------CCSCCCC---CCTTCCEEECCSSCCCSCCGG-------G
T ss_pred CCccC-----cCC----CCCCcCcEEECCCC----------CCCcCCc---ccccCcEEeCCCCCCCcCCHH-------H
Confidence 98544 344 233456 777776 5567776 678999999999999999876 6
Q ss_pred CCCCCcCEEeeecCCCCcccC
Q 044605 331 RNLTSLERLELSRCPILKSFP 351 (405)
Q Consensus 331 ~~l~~L~~L~l~~c~~l~~l~ 351 (405)
.++++|+.|++++|+..+..+
T Consensus 281 ~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 281 IHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp GGSCTTCEEECCSCCCCHHHH
T ss_pred hhccccCEEEecCCCCCCcCH
Confidence 789999999999987654443
No 59
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=1.1e-14 Score=129.55 Aligned_cols=193 Identities=13% Similarity=0.114 Sum_probs=130.0
Q ss_pred CCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC---CC
Q 044605 148 ENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---HF 222 (405)
Q Consensus 148 ~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~ 222 (405)
.+|+.|+++++. ++.++. ++.+++|++|++.++..+..++. .....+++|++|++++|..++...+. .+
T Consensus 31 ~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-----~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLES-----HSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104 (239)
T ss_dssp TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECT-----TTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCH-----hHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence 467788887776 666654 66778888888877654666643 01123778888888775566632222 56
Q ss_pred CcccEEEEeccC--CccccCCCCCCcc---eEEEcCcCCccccccccccCCCCCCCCC---eeecCCCCccEEecCCCCc
Q 044605 223 SSLERIVIMSCE--QLLVSCTTLPLLC---ELEIDGFGEVAWINRPVEAGIFDSSNPG---PEKSRTEVLPWEIGSPDQE 294 (405)
Q Consensus 223 ~~L~~L~l~~c~--~l~~~l~~l~~L~---~L~l~~~~~l~~~~~~~~~~~~~~l~~L---l~l~~~~~l~l~i~~~~l~ 294 (405)
++|+.|+++++. .+|. +..+++|+ +|++++|..+. .++...|..++.| ++++++ +++
T Consensus 105 ~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~----~i~~~~~~~l~~L~~~L~l~~n----------~l~ 169 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMT----SIPVNAFQGLCNETLTLKLYNN----------GFT 169 (239)
T ss_dssp TTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCC----EECTTTTTTTBSSEEEEECCSC----------CCC
T ss_pred CCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchh----hcCcccccchhcceeEEEcCCC----------CCc
Confidence 778888887764 3443 66677777 88888874454 5666666666555 334343 456
Q ss_pred ccccccCCCCCccEEEEeCC-cccccccCCCCCcccCCCC-CCcCEEeeecCCCCcccCCCCCcCCccEEeecCCcc
Q 044605 295 SLPEGLHKLSHITRISIVGS-YLVSFPKGGLESLSFVRNL-TSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPD 369 (405)
Q Consensus 295 ~lp~~~~~l~~L~~L~l~~~-~l~~l~~~~~~~l~~l~~l-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~ 369 (405)
.+|......++|+.|++++| .++.++...| .++ ++|++|++++| .++.+|.. .+++|+.|++.+++.
T Consensus 170 ~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~------~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF------GGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp EECTTTTTTCEEEEEECTTCTTCCEECTTTT------TTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC--
T ss_pred ccCHhhcCCCCCCEEEcCCCCCcccCCHHHh------hccccCCcEEECCCC-ccccCChh-HhccCceeeccCccC
Confidence 67665444488999999998 4988887654 667 89999999985 56777765 456899999988864
No 60
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.64 E-value=8.8e-15 Score=136.75 Aligned_cols=239 Identities=18% Similarity=0.156 Sum_probs=163.9
Q ss_pred cCCCCCCccEEEEEeeCCCCC-CcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCC--CCCCC
Q 044605 118 MLKPHYGLKELKVQNYGGTKF-PAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGT--TGGDQ 194 (405)
Q Consensus 118 ~l~~~~~L~~L~l~~~~~~~l-p~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~--~~~~~ 194 (405)
.+..+++|+.|++.++....+ |..+. .+++|+.|++++|. ++.+|.- ..++|++|++.++. +..++. ++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~-l~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~~~--- 142 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFA--PLVKLERLYLSKNQ-LKELPEK-MPKTLQELRVHENE-ITKVRKSVFN--- 142 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSC-CSBCCSS-CCTTCCEEECCSSC-CCBBCHHHHT---
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhc--CCCCCCEEECCCCc-CCccChh-hcccccEEECCCCc-ccccCHhHhc---
Confidence 355678899999888776555 66665 78889999998887 6666642 13788999988764 444432 33
Q ss_pred CCCCCCCcccEEeeccCcccc-ccCCC---CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCC
Q 044605 195 QAAKGFPCLRELSIINCSKLK-GRLPQ---HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGI 268 (405)
Q Consensus 195 ~~~~~~~~L~~L~l~~~~~l~-~~l~~---~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 268 (405)
.+++|++|+++++..-. +..+. .+++|+.|+++++. .+|..+. ++|++|++++|... .++...
T Consensus 143 ----~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~-----~~~~~~ 211 (330)
T 1xku_A 143 ----GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKIT-----KVDAAS 211 (330)
T ss_dssp ----TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCC-----EECTGG
T ss_pred ----CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCC-----ccCHHH
Confidence 38899999998864321 12222 57889999998764 3344333 78999999988654 445557
Q ss_pred CCCCCCC--eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605 269 FDSSNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP 345 (405)
Q Consensus 269 ~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~ 345 (405)
+..+++| ++++++ .++.++. .+..+++|+.|++++|.++.+|.. +..+++|++|++++|+
T Consensus 212 ~~~l~~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-------l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 212 LKGLNNLAKLGLSFN----------SISAVDNGSLANTPHLRELHLNNNKLVKVPGG-------LADHKYIQVVYLHNNN 274 (330)
T ss_dssp GTTCTTCCEEECCSS----------CCCEECTTTGGGSTTCCEEECCSSCCSSCCTT-------TTTCSSCCEEECCSSC
T ss_pred hcCCCCCCEEECCCC----------cCceeChhhccCCCCCCEEECCCCcCccCChh-------hccCCCcCEEECCCCc
Confidence 7788888 888877 3445543 678899999999999999988876 6788999999999864
Q ss_pred CCcccCCCCC--------cCCccEEeecCCcchHHHhhcCcccccccccccCeeEecce
Q 044605 346 ILKSFPENGL--------LPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHK 396 (405)
Q Consensus 346 ~l~~l~~~~~--------~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~ 396 (405)
++.++.... .+++..|++.+.|--.-. .....+....+++.+++.++
T Consensus 275 -i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~---i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 275 -ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE---IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp -CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG---SCGGGGTTCCCGGGEEC---
T ss_pred -CCccChhhcCCcccccccccccceEeecCcccccc---cCccccccccceeEEEeccc
Confidence 666654321 257889999988732111 12234555677777777665
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=2.6e-16 Score=146.09 Aligned_cols=195 Identities=23% Similarity=0.244 Sum_probs=117.2
Q ss_pred CCCCccEEEEEeeCCC-CCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCC-----CCccEEeecCCCCCeeeCCCCCC
Q 044605 121 PHYGLKELKVQNYGGT-KFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHL-----PLLKNLVIKGMGRMAKAGTTGGD 193 (405)
Q Consensus 121 ~~~~L~~L~l~~~~~~-~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l-----~~L~~L~l~~~~~l~~~~~~~~~ 193 (405)
.+++|+.|++.++... ..|..+....+++|+.|++++|. ++.+|. ++.+ ++|++|+++++. +..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~---- 166 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSC---- 166 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCT----
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchH----
Confidence 3678889999888754 56765522378899999999887 555553 3333 889999998865 444432
Q ss_pred CCCCCCCCcccEEeeccCcccc------ccCCCCCCcccEEEEeccCCc-----c-ccCCCCCCcceEEEcCcCCccccc
Q 044605 194 QQAAKGFPCLRELSIINCSKLK------GRLPQHFSSLERIVIMSCEQL-----L-VSCTTLPLLCELEIDGFGEVAWIN 261 (405)
Q Consensus 194 ~~~~~~~~~L~~L~l~~~~~l~------~~l~~~~~~L~~L~l~~c~~l-----~-~~l~~l~~L~~L~l~~~~~l~~~~ 261 (405)
.....+++|++|+++++.-.. ......+++|++|++++|.-- + ..+..+++|++|++++|....
T Consensus 167 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--- 242 (312)
T 1wwl_A 167 -EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD--- 242 (312)
T ss_dssp -TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS---
T ss_pred -HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc---
Confidence 112248888999888864221 111246778888888776421 1 222356788888888775443
Q ss_pred cccccCCCCCCCCCeeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEee
Q 044605 262 RPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLEL 341 (405)
Q Consensus 262 ~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l 341 (405)
..+.. .+..+++|+.|++++|.++.+|.. +. ++|++|++
T Consensus 243 -~~~~~-------------------------------~~~~l~~L~~L~Ls~N~l~~ip~~-------~~--~~L~~L~L 281 (312)
T 1wwl_A 243 -AAGAP-------------------------------SCDWPSQLNSLNLSFTGLKQVPKG-------LP--AKLSVLDL 281 (312)
T ss_dssp -SCCCS-------------------------------CCCCCTTCCEEECTTSCCSSCCSS-------CC--SEEEEEEC
T ss_pred -ccchh-------------------------------hhhhcCCCCEEECCCCccChhhhh-------cc--CCceEEEC
Confidence 11111 233455666666666666666544 22 56666666
Q ss_pred ecCCCCcccCCCCCcCCccEEeecCC
Q 044605 342 SRCPILKSFPENGLLPSVVYLSIYLC 367 (405)
Q Consensus 342 ~~c~~l~~l~~~~~~~~L~~L~i~~c 367 (405)
++| .++.+|....+++|++|++++.
T Consensus 282 s~N-~l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 282 SYN-RLDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp CSS-CCCSCCCTTTSCEEEEEECTTC
T ss_pred CCC-CCCCChhHhhCCCCCEEeccCC
Confidence 664 3444444434456666666655
No 62
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.61 E-value=1.5e-14 Score=135.27 Aligned_cols=242 Identities=15% Similarity=0.099 Sum_probs=169.6
Q ss_pred cCCCCCCccEEEEEeeCCCCC-CcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCC
Q 044605 118 MLKPHYGLKELKVQNYGGTKF-PAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQA 196 (405)
Q Consensus 118 ~l~~~~~L~~L~l~~~~~~~l-p~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 196 (405)
.+..+++|+.|++.++....+ |..+. .+++|+.|++++|. ++.+|.-. .++|++|++.++. +..++. ..
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~-l~~l~~~~-~~~L~~L~l~~n~-i~~~~~-----~~ 142 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFS--PLRKLQKLYISKNH-LVEIPPNL-PSSLVELRIHDNR-IRKVPK-----GV 142 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGST--TCTTCCEEECCSSC-CCSCCSSC-CTTCCEEECCSSC-CCCCCS-----GG
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhh--CcCCCCEEECCCCc-CCccCccc-cccCCEEECCCCc-cCccCH-----hH
Confidence 466788899999998876555 55565 78999999999887 66676522 2899999998764 444433 11
Q ss_pred CCCCCcccEEeeccCcccc-ccCCCCCC--cccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCC
Q 044605 197 AKGFPCLRELSIINCSKLK-GRLPQHFS--SLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDS 271 (405)
Q Consensus 197 ~~~~~~L~~L~l~~~~~l~-~~l~~~~~--~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 271 (405)
...+++|++|+++++.--. +..+..+. +|+.|+++++. .+|..+. ++|++|++++|... .++...+..
T Consensus 143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~-----~~~~~~l~~ 215 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQ-----AIELEDLLR 215 (332)
T ss_dssp GSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCC-----CCCTTSSTT
T ss_pred hCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCCCEEECCCCcCC-----ccCHHHhcC
Confidence 2348999999998864321 12333221 78888888764 3344333 79999999998655 455567888
Q ss_pred CCCC--eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCc
Q 044605 272 SNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILK 348 (405)
Q Consensus 272 l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~ 348 (405)
+++| ++++++ .++.++. .+..+++|+.|++++|.++.+|.. +..+++|++|++++|+ ++
T Consensus 216 l~~L~~L~L~~N----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-------l~~l~~L~~L~l~~N~-l~ 277 (332)
T 2ft3_A 216 YSKLYRLGLGHN----------QIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-------LPDLKLLQVVYLHTNN-IT 277 (332)
T ss_dssp CTTCSCCBCCSS----------CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-------GGGCTTCCEEECCSSC-CC
T ss_pred CCCCCEEECCCC----------cCCcCChhHhhCCCCCCEEECCCCcCeecChh-------hhcCccCCEEECCCCC-CC
Confidence 8888 888887 4455554 688999999999999999999876 6789999999999964 66
Q ss_pred ccCCCCC--------cCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceE
Q 044605 349 SFPENGL--------LPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKL 397 (405)
Q Consensus 349 ~l~~~~~--------~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~ 397 (405)
.++.... ..+|+.|++.++|-..... ....+..+.+++.+.+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~---~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV---QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS---CGGGGTTBCCSTTEEC----
T ss_pred ccChhHccccccccccccccceEeecCccccccc---Ccccccccchhhhhhccccc
Confidence 6754311 3578999999997431111 23446667888888877653
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=8.9e-17 Score=149.58 Aligned_cols=38 Identities=11% Similarity=-0.034 Sum_probs=30.3
Q ss_pred CchhhheeeEEEEEccCCCCccCc-cccCCCccCcccCc
Q 044605 19 GDFTEIFVIYLILVGDLTESKEMP-LRIGKLTSLRTLTK 56 (405)
Q Consensus 19 ~~~~~~~~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~~ 56 (405)
..++..+++|++|++++|.++.+| ..++++++|++|++
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 65 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEEC
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEEC
Confidence 344445678999999999999876 56999999999974
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=9.6e-15 Score=133.57 Aligned_cols=196 Identities=16% Similarity=0.233 Sum_probs=151.0
Q ss_pred CCCccEEEEEeeCCCCCCc-ccCCCCCCCccEEEEEcCCCCCcC-C-CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCC
Q 044605 122 HYGLKELKVQNYGGTKFPA-WLGQSSFENLVVLRFRNCNQCTSL-P-SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAK 198 (405)
Q Consensus 122 ~~~L~~L~l~~~~~~~lp~-~~~~~~l~~L~~L~l~~~~~~~~l-~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 198 (405)
.++|+.|++.++....++. .+. .+++|+.|++++|. ++.+ + .+..+++|++|++.++..+..++. ....
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~-----~~~~ 102 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDP-----ATFH 102 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCT-----TTTT
T ss_pred CCCceEEEeeCCcCCccCHHHcc--cCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCH-----HHhc
Confidence 4689999999887766654 344 78999999999987 5655 3 488899999999998865666633 1123
Q ss_pred CCCcccEEeeccCccccccCCC---CCCcccEEEEeccC--Ccc-ccCCCCCCcceEEEcCcCCccccccccccCCCCCC
Q 044605 199 GFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QLL-VSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSS 272 (405)
Q Consensus 199 ~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l 272 (405)
.+++|++|+++++ .+++..+. .+++|++|+++++. .++ ..+..+++|++|++++|... .++...+..+
T Consensus 103 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l 176 (285)
T 1ozn_A 103 GLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-----SVPERAFRGL 176 (285)
T ss_dssp TCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-----EECTTTTTTC
T ss_pred CCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-----ccCHHHhcCc
Confidence 4899999999986 44433343 57899999999875 333 44778999999999998654 5666678888
Q ss_pred CCC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCC
Q 044605 273 NPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPIL 347 (405)
Q Consensus 273 ~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l 347 (405)
++| ++++++. ++.+ |..+..+++|+.|++++|.++.++... +..+++|++|++++|+..
T Consensus 177 ~~L~~L~l~~n~----------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 177 HSLDRLLLHQNR----------VAHVHPHAFRDLGRLMTLYLFANNLSALPTEA------LAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTCCEEECCSSC----------CCEECTTTTTTCTTCCEEECCSSCCSCCCHHH------HTTCTTCCEEECCSSCEE
T ss_pred cccCEEECCCCc----------ccccCHhHccCcccccEeeCCCCcCCcCCHHH------cccCcccCEEeccCCCcc
Confidence 888 8888873 3444 678889999999999999999887544 378899999999998754
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.59 E-value=5.2e-15 Score=139.69 Aligned_cols=217 Identities=21% Similarity=0.187 Sum_probs=150.9
Q ss_pred CCccEEEEEeeCCCCCCc-ccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCC--CCCCCCCC
Q 044605 123 YGLKELKVQNYGGTKFPA-WLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGT--TGGDQQAA 197 (405)
Q Consensus 123 ~~L~~L~l~~~~~~~lp~-~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~ 197 (405)
++|+.|++.++....+|. .+. .+++|+.|++++|. ++.++ .++.+++|++|+++++. +..++. ++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~------ 121 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQ--RCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFK------ 121 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHT------
T ss_pred ccCcEEECCCCcCcccCHHHhc--cCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhC------
Confidence 478888888877666654 344 68888888888876 55553 37788888888888764 444433 23
Q ss_pred CCCCcccEEeeccCccccccCCC-----CCCcccEEEEeccCCc----cccCCCCCCcceEEEcCcCCccccccccccCC
Q 044605 198 KGFPCLRELSIINCSKLKGRLPQ-----HFSSLERIVIMSCEQL----LVSCTTLPLLCELEIDGFGEVAWINRPVEAGI 268 (405)
Q Consensus 198 ~~~~~L~~L~l~~~~~l~~~l~~-----~~~~L~~L~l~~c~~l----~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 268 (405)
.+++|++|+++++ .+++ +|. .+++|+.|++++|..+ +..+..+++|+.|++++|... .+....
T Consensus 122 -~l~~L~~L~L~~n-~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~ 193 (353)
T 2z80_A 122 -PLSSLTFLNLLGN-PYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-----SYEPKS 193 (353)
T ss_dssp -TCTTCSEEECTTC-CCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----EECTTT
T ss_pred -CCccCCEEECCCC-CCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-----ccCHHH
Confidence 3788888888875 4442 332 5788888888887433 346777888888888888654 344556
Q ss_pred CCCCCCC--eeecCCCCccEEecCCCCccccccc-CCCCCccEEEEeCCcccccccCCCCC-------------------
Q 044605 269 FDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGL-HKLSHITRISIVGSYLVSFPKGGLES------------------- 326 (405)
Q Consensus 269 ~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~-~~l~~L~~L~l~~~~l~~l~~~~~~~------------------- 326 (405)
+..+++| ++++++ .++.+|..+ ..+++|+.|++++|.++.++...+..
T Consensus 194 l~~l~~L~~L~l~~n----------~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 194 LKSIQNVSHLILHMK----------QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TTTCSEEEEEEEECS----------CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred HhccccCCeecCCCC----------ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 7777777 777776 445666543 46899999999998888765332210
Q ss_pred -----ccc-CCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605 327 -----LSF-VRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 327 -----l~~-l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 368 (405)
+|. +.++++|++|++++| .++.+|.. ..+++|++|+++++|
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 111 456789999999987 56778765 456799999999885
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=1.8e-13 Score=125.40 Aligned_cols=195 Identities=18% Similarity=0.206 Sum_probs=107.7
Q ss_pred CCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCCCCCCCCC
Q 044605 119 LKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQA 196 (405)
Q Consensus 119 l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 196 (405)
+..+++++.+++.++....+|..+ .++++.|++++|. ++.++ .+..+++|++|++.++. +..++.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~----~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------- 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL----PKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQV------- 72 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC----CTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-------
T ss_pred ccccCCccEEECCCCCCCcCCCCC----CCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccC-------
Confidence 344566777777766666666543 2567778887776 44443 36677777777777653 444433
Q ss_pred CCCCCcccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC-
Q 044605 197 AKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG- 275 (405)
Q Consensus 197 ~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L- 275 (405)
...+++|++|+++++ .++ .+| ..+..+++|++|++++|... .++.+.|..+++|
T Consensus 73 ~~~l~~L~~L~Ls~N-~l~-~l~------------------~~~~~l~~L~~L~l~~N~l~-----~l~~~~~~~l~~L~ 127 (290)
T 1p9a_G 73 DGTLPVLGTLDLSHN-QLQ-SLP------------------LLGQTLPALTVLDVSFNRLT-----SLPLGALRGLGELQ 127 (290)
T ss_dssp CSCCTTCCEEECCSS-CCS-SCC------------------CCTTTCTTCCEEECCSSCCC-----CCCSSTTTTCTTCC
T ss_pred CCCCCcCCEEECCCC-cCC-cCc------------------hhhccCCCCCEEECCCCcCc-----ccCHHHHcCCCCCC
Confidence 234677777777664 333 233 23333444444444444322 2333344444444
Q ss_pred -eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC
Q 044605 276 -PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN 353 (405)
Q Consensus 276 -l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~ 353 (405)
|+++++ +++.+|. .+..+++|+.|++++|+++.+|...| .++++|++|++++| .++.+|..
T Consensus 128 ~L~L~~N----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~------~~l~~L~~L~L~~N-~l~~ip~~ 190 (290)
T 1p9a_G 128 ELYLKGN----------ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL------NGLENLDTLLLQEN-SLYTIPKG 190 (290)
T ss_dssp EEECTTS----------CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTT------TTCTTCCEEECCSS-CCCCCCTT
T ss_pred EEECCCC----------CCCccChhhcccccCCCEEECCCCcCCccCHHHh------cCcCCCCEEECCCC-cCCccChh
Confidence 444443 2233433 34566666666666666666665433 45666666666664 34556554
Q ss_pred -CCcCCccEEeecCCc
Q 044605 354 -GLLPSVVYLSIYLCP 368 (405)
Q Consensus 354 -~~~~~L~~L~i~~c~ 368 (405)
....+|+.+++.+.|
T Consensus 191 ~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 191 FFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTCCCSEEECCSCC
T ss_pred hcccccCCeEEeCCCC
Confidence 223466666666543
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=4.8e-14 Score=125.47 Aligned_cols=191 Identities=16% Similarity=0.148 Sum_probs=146.1
Q ss_pred CCccEEEEEeeCCCCCCc-ccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605 123 YGLKELKVQNYGGTKFPA-WLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG 199 (405)
Q Consensus 123 ~~L~~L~l~~~~~~~lp~-~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 199 (405)
.+++.|++.++....+|. .+. .+++|+.|++++|..++.++. +..+++|++|++.+|+.+..++. .....
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~-----~~f~~ 103 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP-----DALKE 103 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-----TSEEC
T ss_pred CcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-----HHhCC
Confidence 479999999988777765 344 689999999999976777763 77899999999998667777764 11224
Q ss_pred CCcccEEeeccCccccccCCC--CCCccc---EEEEeccCCc---c-ccCCCCCCcc-eEEEcCcCCccccccccccCCC
Q 044605 200 FPCLRELSIINCSKLKGRLPQ--HFSSLE---RIVIMSCEQL---L-VSCTTLPLLC-ELEIDGFGEVAWINRPVEAGIF 269 (405)
Q Consensus 200 ~~~L~~L~l~~~~~l~~~l~~--~~~~L~---~L~l~~c~~l---~-~~l~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~ 269 (405)
+++|++|+++++ .++ .+|. .+++|+ .|+++++..+ + ..|..+++|+ .|++++|... .++...+
T Consensus 104 l~~L~~L~l~~n-~l~-~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-----~i~~~~~ 176 (239)
T 2xwt_C 104 LPLLKFLGIFNT-GLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-----SVQGYAF 176 (239)
T ss_dssp CTTCCEEEEEEE-CCC-SCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-----EECTTTT
T ss_pred CCCCCEEeCCCC-CCc-cccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-----ccCHhhc
Confidence 899999999986 455 3553 567777 9999988433 3 4578899999 9999998654 5666666
Q ss_pred CCCCCC--eeecCCCCccEEecCCCCccccc-ccCCC-CCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605 270 DSSNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKL-SHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP 345 (405)
Q Consensus 270 ~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l-~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~ 345 (405)
.. ++| ++++++.. ++.+|. .+..+ ++|+.|++++|.++.+|.. .+++|+.|++.++.
T Consensus 177 ~~-~~L~~L~L~~n~~---------l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---------~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKY---------LTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---------GLEHLKELIARNTW 237 (239)
T ss_dssp TT-CEEEEEECTTCTT---------CCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---------TCTTCSEEECTTC-
T ss_pred CC-CCCCEEEcCCCCC---------cccCCHHHhhccccCCcEEECCCCccccCChh---------HhccCceeeccCcc
Confidence 55 677 88877732 356654 67788 9999999999999999865 46899999998875
Q ss_pred C
Q 044605 346 I 346 (405)
Q Consensus 346 ~ 346 (405)
.
T Consensus 238 ~ 238 (239)
T 2xwt_C 238 T 238 (239)
T ss_dssp -
T ss_pred C
Confidence 4
No 68
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=4e-13 Score=126.59 Aligned_cols=211 Identities=19% Similarity=0.180 Sum_probs=133.4
Q ss_pred CCccEEEEEeeCCCCCCcc-cCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605 123 YGLKELKVQNYGGTKFPAW-LGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG 199 (405)
Q Consensus 123 ~~L~~L~l~~~~~~~lp~~-~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 199 (405)
.++++|++.++....+|.. +. .+++|+.|++++|...+.+|. +..++++.++.+.+++.+..++. .....
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~-----~~f~~ 102 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-----EAFQN 102 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT-----TSBCC
T ss_pred CCCCEEEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc-----hhhhh
Confidence 5677777777766666643 33 567777777777764444543 55666666655555555666643 01123
Q ss_pred CCcccEEeeccCccccccCCC----CCCcccEEEEeccCCc----cccCCCC-CCcceEEEcCcCCccccccccccCCCC
Q 044605 200 FPCLRELSIINCSKLKGRLPQ----HFSSLERIVIMSCEQL----LVSCTTL-PLLCELEIDGFGEVAWINRPVEAGIFD 270 (405)
Q Consensus 200 ~~~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c~~l----~~~l~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~ 270 (405)
+++|++|+++++ .++. ++. ...++..+++.++..+ +..|..+ ..++.|++++|... .++.+.|.
T Consensus 103 l~~L~~L~l~~n-~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-----~i~~~~f~ 175 (350)
T 4ay9_X 103 LPNLQYLLISNT-GIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-----EIHNSAFN 175 (350)
T ss_dssp CTTCCEEEEEEE-CCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-----EECTTSST
T ss_pred cccccccccccc-cccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-----CCChhhcc
Confidence 677777777664 3432 222 2344556666555443 1233333 35677777766443 34444443
Q ss_pred CCCCC--eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCC
Q 044605 271 SSNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPIL 347 (405)
Q Consensus 271 ~l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l 347 (405)
. .++ +.+.+ ++.++.+|. .+..+++|+.|++++|+++.+|.. .+.+|+.|.+.+++.+
T Consensus 176 ~-~~L~~l~l~~---------~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---------~~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 176 G-TQLDELNLSD---------NNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---------GLENLKKLRARSTYNL 236 (350)
T ss_dssp T-EEEEEEECTT---------CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---------SCTTCCEEECTTCTTC
T ss_pred c-cchhHHhhcc---------CCcccCCCHHHhccCcccchhhcCCCCcCccChh---------hhccchHhhhccCCCc
Confidence 2 223 44433 445678886 568999999999999999999976 3578888888888999
Q ss_pred cccCCCCCcCCccEEeecC
Q 044605 348 KSFPENGLLPSVVYLSIYL 366 (405)
Q Consensus 348 ~~l~~~~~~~~L~~L~i~~ 366 (405)
+.+|....+++|+.+++..
T Consensus 237 ~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 237 KKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCTTTCCSCCEEECSC
T ss_pred CcCCCchhCcChhhCcCCC
Confidence 9999776667999999864
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.54 E-value=2.2e-13 Score=123.49 Aligned_cols=189 Identities=21% Similarity=0.285 Sum_probs=105.1
Q ss_pred CccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCC
Q 044605 124 GLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFP 201 (405)
Q Consensus 124 ~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 201 (405)
..+.+++.++....+|..+ .++++.|++++|. ++.++. +..+++|++|++.++. +..++. .....++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~-----~~~~~l~ 85 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI----PADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPA-----GIFKELK 85 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC----CTTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCT-----TTTSSCT
T ss_pred CCCEEEccCCCCCccCCCC----CCCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeCh-----hhhcCCC
Confidence 4566666666666666543 2578888888876 666653 7778888888887753 444433 0112377
Q ss_pred cccEEeeccCccccccCC----CCCCcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCC
Q 044605 202 CLRELSIINCSKLKGRLP----QHFSSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNP 274 (405)
Q Consensus 202 ~L~~L~l~~~~~l~~~l~----~~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~ 274 (405)
+|++|+++++ .+.+ ++ ..+++|+.|+++++. .+ +..|..+++|++|++++|... .++...
T Consensus 86 ~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~------ 152 (270)
T 2o6q_A 86 NLETLWVTDN-KLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-----SLPKGV------ 152 (270)
T ss_dssp TCCEEECCSS-CCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-----CCCTTT------
T ss_pred CCCEEECCCC-cCCc-CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-----ccCHhH------
Confidence 8888888775 3442 33 135566666666543 12 233455666666666665322 223322
Q ss_pred CeeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-
Q 044605 275 GPEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN- 353 (405)
Q Consensus 275 Ll~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~- 353 (405)
+..+++|+.|++++|.++.++...| .++++|++|++++| .++.++..
T Consensus 153 -------------------------~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~ 200 (270)
T 2o6q_A 153 -------------------------FDKLTSLKELRLYNNQLKRVPEGAF------DKLTELKTLKLDNN-QLKRVPEGA 200 (270)
T ss_dssp -------------------------TTTCTTCCEEECCSSCCSCCCTTTT------TTCTTCCEEECCSS-CCSCCCTTT
T ss_pred -------------------------ccCCcccceeEecCCcCcEeChhHh------ccCCCcCEEECCCC-cCCcCCHHH
Confidence 4455555555555555555554332 44555555555554 33444432
Q ss_pred -CCcCCccEEeecCCc
Q 044605 354 -GLLPSVVYLSIYLCP 368 (405)
Q Consensus 354 -~~~~~L~~L~i~~c~ 368 (405)
..+++|+.|+++++|
T Consensus 201 ~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hccccCCCEEEecCCC
Confidence 223455555555543
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=1.1e-13 Score=126.87 Aligned_cols=174 Identities=21% Similarity=0.234 Sum_probs=114.3
Q ss_pred CCCccEEEEEeeCCCCCC-cccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCC
Q 044605 122 HYGLKELKVQNYGGTKFP-AWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGF 200 (405)
Q Consensus 122 ~~~L~~L~l~~~~~~~lp-~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 200 (405)
.++++.|++.++....++ ..+. .+++|+.|++++|. ++.++..+.+++|++|+++++. +..++. ....+
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~------~~~~l 99 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQSLPL------LGQTL 99 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC-CSSCCC------CTTTC
T ss_pred CCCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCc-CCcCch------hhccC
Confidence 368999999998866553 4455 78999999999987 7778777899999999999864 555544 12347
Q ss_pred CcccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eee
Q 044605 201 PCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEK 278 (405)
Q Consensus 201 ~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l 278 (405)
++|++|+++++ .+++ ++. ..|..+++|+.|++++|... .++.+.|..+++| |++
T Consensus 100 ~~L~~L~l~~N-~l~~-l~~-----------------~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 100 PALTVLDVSFN-RLTS-LPL-----------------GALRGLGELQELYLKGNELK-----TLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSS-CCCC-CCS-----------------STTTTCTTCCEEECTTSCCC-----CCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCC-cCcc-cCH-----------------HHHcCCCCCCEEECCCCCCC-----ccChhhcccccCCCEEEC
Confidence 88899988885 4442 321 22334444444444444322 3333344444444 444
Q ss_pred cCCCCccEEecCCCCcccccc-cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605 279 SRTEVLPWEIGSPDQESLPEG-LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI 346 (405)
Q Consensus 279 ~~~~~l~l~i~~~~l~~lp~~-~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~ 346 (405)
+++ +++.+|.. +..+++|+.|++++|.++.+|.. +...++|+.|++.+|+.
T Consensus 156 ~~N----------~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~-------~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 156 ANN----------NLTELPAGLLNGLENLDTLLLQENSLYTIPKG-------FFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTS----------CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCCCSEEECCSCCB
T ss_pred CCC----------cCCccCHHHhcCcCCCCEEECCCCcCCccChh-------hcccccCCeEEeCCCCc
Confidence 444 33455543 45778888888888888887776 34666788888877663
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=7.6e-14 Score=126.96 Aligned_cols=124 Identities=19% Similarity=0.249 Sum_probs=64.4
Q ss_pred CCccEEEEEeeCCCCCCc-ccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605 123 YGLKELKVQNYGGTKFPA-WLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG 199 (405)
Q Consensus 123 ~~L~~L~l~~~~~~~lp~-~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 199 (405)
++|+.|++.++....++. .+. .+++|+.|++++|. ++.++. +..+++|++|+++++. +..++. .....
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLAL-----GAFSG 98 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTT--TCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECT-----TTTTT
T ss_pred CCccEEECCCCcccccCHhHhc--cccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccCh-----hhhcC
Confidence 356666666655544433 333 46666666666664 444442 5666666666666543 333322 01123
Q ss_pred CCcccEEeeccCccccccCC---CCCCcccEEEEeccC--C--ccccCCCCCCcceEEEcCcCC
Q 044605 200 FPCLRELSIINCSKLKGRLP---QHFSSLERIVIMSCE--Q--LLVSCTTLPLLCELEIDGFGE 256 (405)
Q Consensus 200 ~~~L~~L~l~~~~~l~~~l~---~~~~~L~~L~l~~c~--~--l~~~l~~l~~L~~L~l~~~~~ 256 (405)
+++|++|++.++ .+.+..+ ..+++|++|+++++. . +|..+..+++|++|++++|..
T Consensus 99 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 99 LSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp CTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CccccEEECCCC-CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 566666666654 2332111 145566666665543 1 344555566666666666543
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=6.4e-14 Score=129.63 Aligned_cols=188 Identities=14% Similarity=0.228 Sum_probs=132.6
Q ss_pred CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCC
Q 044605 122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFP 201 (405)
Q Consensus 122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 201 (405)
+++|+.|++.++....+|. +. .+++|+.|++++|. +..++.+..+++|++|++.++. +..++. ...++
T Consensus 40 l~~L~~L~l~~~~i~~l~~-~~--~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------~~~l~ 107 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEG-VQ--YLNNLIGLELKDNQ-ITDLAPLKNLTKITELELSGNP-LKNVSA-------IAGLQ 107 (308)
T ss_dssp HHTCCEEECTTSCCCCCTT-GG--GCTTCCEEECCSSC-CCCCGGGTTCCSCCEEECCSCC-CSCCGG-------GTTCT
T ss_pred cCCcCEEEeeCCCccCchh-hh--ccCCCCEEEccCCc-CCCChhHccCCCCCEEEccCCc-CCCchh-------hcCCC
Confidence 4568888888877666663 44 68888899988886 6667668888889998888764 444443 23378
Q ss_pred cccEEeeccCccccccCC--CCCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--
Q 044605 202 CLRELSIINCSKLKGRLP--QHFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG-- 275 (405)
Q Consensus 202 ~L~~L~l~~~~~l~~~l~--~~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L-- 275 (405)
+|++|+++++ .+++ ++ ..+++|+.|++++|. .+ ..+..+++|+.|++++|... .++. +..+++|
T Consensus 108 ~L~~L~l~~n-~l~~-~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~-----~~~~--l~~l~~L~~ 177 (308)
T 1h6u_A 108 SIKTLDLTST-QITD-VTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVS-----DLTP--LANLSKLTT 177 (308)
T ss_dssp TCCEEECTTS-CCCC-CGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCC-----CCGG--GTTCTTCCE
T ss_pred CCCEEECCCC-CCCC-chhhcCCCCCCEEECCCCccCcC-ccccCCCCccEEEccCCcCC-----CChh--hcCCCCCCE
Confidence 8888888886 3442 33 267888888888764 22 23667888888888888544 2232 6666677
Q ss_pred eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccC
Q 044605 276 PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFP 351 (405)
Q Consensus 276 l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~ 351 (405)
++++++ .++.++. +..+++|+.|++++|.++.++. +..+++|++|++++|+ ++..|
T Consensus 178 L~l~~n----------~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--------l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 178 LKADDN----------KISDISP-LASLPNLIEVHLKNNQISDVSP--------LANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp EECCSS----------CCCCCGG-GGGCTTCCEEECTTSCCCBCGG--------GTTCTTCCEEEEEEEE-EECCC
T ss_pred EECCCC----------ccCcChh-hcCCCCCCEEEccCCccCcccc--------ccCCCCCCEEEccCCe-eecCC
Confidence 777766 3445554 6788889999998888887763 4778888899988865 34443
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=7.2e-14 Score=129.29 Aligned_cols=184 Identities=14% Similarity=0.158 Sum_probs=145.1
Q ss_pred CCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC--CCC
Q 044605 146 SFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ--HFS 223 (405)
Q Consensus 146 ~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~--~~~ 223 (405)
.+++|+.|++++|. +..++++..+++|++|+++++. +..++. ...+++|++|+++++. +++ ++. .++
T Consensus 39 ~l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~-i~~~~~-------~~~l~~L~~L~L~~n~-l~~-~~~~~~l~ 107 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQ-ITDLAP-------LKNLTKITELELSGNP-LKN-VSAIAGLQ 107 (308)
T ss_dssp HHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSC-CCCCGG-------GTTCCSCCEEECCSCC-CSC-CGGGTTCT
T ss_pred HcCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCc-CCCChh-------HccCCCCCEEEccCCc-CCC-chhhcCCC
Confidence 57899999999986 7888889999999999999873 444443 3348999999999964 553 443 689
Q ss_pred cccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccc
Q 044605 224 SLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEG 299 (405)
Q Consensus 224 ~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~ 299 (405)
+|+.|++++|. .+ ..+..+++|++|++++|.... ++. +..+++| |++++| .++.++.
T Consensus 108 ~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~-----~~~--l~~l~~L~~L~l~~n----------~l~~~~~- 168 (308)
T 1h6u_A 108 SIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITN-----ISP--LAGLTNLQYLSIGNA----------QVSDLTP- 168 (308)
T ss_dssp TCCEEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCC-----CGG--GGGCTTCCEEECCSS----------CCCCCGG-
T ss_pred CCCEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCc-----Ccc--ccCCCCccEEEccCC----------cCCCChh-
Confidence 99999999875 33 348889999999999986553 222 6677777 888887 4456665
Q ss_pred cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCc
Q 044605 300 LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCP 368 (405)
Q Consensus 300 ~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 368 (405)
+..+++|+.|++++|.++.++. +..+++|++|++++|. ++.++....+++|++|++++++
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--------l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--------LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--------GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEEE
T ss_pred hcCCCCCCEEECCCCccCcChh--------hcCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCCe
Confidence 8899999999999999988764 4788999999999975 5666545566799999999875
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=1.1e-12 Score=118.94 Aligned_cols=193 Identities=25% Similarity=0.261 Sum_probs=121.9
Q ss_pred CCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC----CCC
Q 044605 148 ENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ----HFS 223 (405)
Q Consensus 148 ~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~----~~~ 223 (405)
.+.+.++++++. ++.+|.- -.+++++|++.++. +..++. .....+++|++|+++++ .++ .++. .++
T Consensus 16 ~~~~~l~~~~~~-l~~ip~~-~~~~l~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~l~~n-~l~-~i~~~~~~~l~ 85 (270)
T 2o6q_A 16 NNKNSVDCSSKK-LTAIPSN-IPADTKKLDLQSNK-LSSLPS-----KAFHRLTKLRLLYLNDN-KLQ-TLPAGIFKELK 85 (270)
T ss_dssp TTTTEEECTTSC-CSSCCSC-CCTTCSEEECCSSC-CSCCCT-----TSSSSCTTCCEEECCSS-CCS-CCCTTTTSSCT
T ss_pred CCCCEEEccCCC-CCccCCC-CCCCCCEEECcCCC-CCeeCH-----HHhcCCCCCCEEECCCC-ccC-eeChhhhcCCC
Confidence 456778887665 6666641 12678888887764 444432 11223778888888774 344 2331 345
Q ss_pred cccEEEEeccC--Ccc-ccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCcccc-cc
Q 044605 224 SLERIVIMSCE--QLL-VSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLP-EG 299 (405)
Q Consensus 224 ~L~~L~l~~c~--~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp-~~ 299 (405)
+|++|+++++. .++ ..+..+++|++|++++| .++.+| ..
T Consensus 86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-------------------------------------~l~~~~~~~ 128 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-------------------------------------QLKSLPPRV 128 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS-------------------------------------CCCCCCTTT
T ss_pred CCCEEECCCCcCCcCCHhHcccccCCCEEECCCC-------------------------------------ccCeeCHHH
Confidence 55555555432 111 22334445555555443 223343 35
Q ss_pred cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCcchHHHhhcC
Q 044605 300 LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCPDLEEKCKKD 377 (405)
Q Consensus 300 ~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~l~~~~~~~ 377 (405)
+..+++|+.|++++|.++.++...| ..+++|++|++++| .++.++.. ..+++|++|+++++. ++. .
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~----~ 196 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPKGVF------DKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKR----V 196 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTT------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSC----C
T ss_pred hCcCcCCCEEECCCCcCCccCHhHc------cCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCc-CCc----C
Confidence 6799999999999999999887654 78899999999997 46667654 445799999999983 321 1
Q ss_pred cccccccccccCeeEecceEee
Q 044605 378 EREYCHLVADIPFVQLNHKLVF 399 (405)
Q Consensus 378 ~~~~~~~i~~i~~~~~~~~~~~ 399 (405)
....+..+.+++.+.+.++.+.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBC
T ss_pred CHHHhccccCCCEEEecCCCee
Confidence 2233556788888998887653
No 75
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.50 E-value=8.8e-16 Score=154.97 Aligned_cols=222 Identities=15% Similarity=0.076 Sum_probs=124.5
Q ss_pred ccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCc--CCC-CCCCCCccEEeecCCCCCeeeCCCCCC
Q 044605 117 EMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTS--LPS-VGHLPLLKNLVIKGMGRMAKAGTTGGD 193 (405)
Q Consensus 117 ~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~--l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~ 193 (405)
..+..+++|+.+.+.+.....+|..+. .+++|++|++++|. ++. ++. +..+++|++|++.++..-..+..
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~--~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~---- 336 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFP--FAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEV---- 336 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGG--GGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH----
T ss_pred HHhhccccccccCccccchhHHHHHHh--hcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHH----
Confidence 345556677777766655555565554 56777777777776 332 111 45677777777763211111111
Q ss_pred CCCCCCCCcccEEeecc----------Ccccccc----CCCCCCcccEEEEeccCCc----cccCCC-CCCcceEEEcC-
Q 044605 194 QQAAKGFPCLRELSIIN----------CSKLKGR----LPQHFSSLERIVIMSCEQL----LVSCTT-LPLLCELEIDG- 253 (405)
Q Consensus 194 ~~~~~~~~~L~~L~l~~----------~~~l~~~----l~~~~~~L~~L~l~~c~~l----~~~l~~-l~~L~~L~l~~- 253 (405)
....+++|++|++.+ |..+++. +...+++|++|++ .|..+ +..+.. +++|+.|++.+
T Consensus 337 --~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 337 --LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLL 413 (592)
T ss_dssp --HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred --HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeec
Confidence 112367788888874 5555431 1124778888887 44443 222322 77888888874
Q ss_pred --cCCccccccccccC-----CCCCCCCC--eeecCCCCccEEecCCCCc-cccccc-CCCCCccEEEEeCCcccc--cc
Q 044605 254 --FGEVAWINRPVEAG-----IFDSSNPG--PEKSRTEVLPWEIGSPDQE-SLPEGL-HKLSHITRISIVGSYLVS--FP 320 (405)
Q Consensus 254 --~~~l~~~~~~~~~~-----~~~~l~~L--l~l~~~~~l~l~i~~~~l~-~lp~~~-~~l~~L~~L~l~~~~l~~--l~ 320 (405)
++.+. ..|.+ .+.++++| ++++.|.+. ++ ..+..+ ..+++|+.|+++++.+++ ++
T Consensus 414 ~~~n~l~----~~p~~~~~~~~~~~~~~L~~L~L~~~~~~--------l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 414 DREERIT----DLPLDNGVRSLLIGCKKLRRFAFYLRQGG--------LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp SCCSCCS----SCCCHHHHHHHHHHCTTCCEEEEECCGGG--------CCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCcccc----CchHHHHHHHHHHhCCCCCEEEEecCCCC--------ccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 33333 21111 12335555 666555320 11 112222 357888999988877654 22
Q ss_pred cCCCCCcccCCCCCCcCEEeeecCCCCcc--cCCC-CCcCCccEEeecCCc
Q 044605 321 KGGLESLSFVRNLTSLERLELSRCPILKS--FPEN-GLLPSVVYLSIYLCP 368 (405)
Q Consensus 321 ~~~~~~l~~l~~l~~L~~L~l~~c~~l~~--l~~~-~~~~~L~~L~i~~c~ 368 (405)
.. +.++++|++|++++|+ +++ ++.. ..+++|++|++++|.
T Consensus 482 ~~-------~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 482 EF-------SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HH-------HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HH-------HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 21 4678889999999987 443 2221 334689999999986
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=3.7e-13 Score=122.15 Aligned_cols=176 Identities=19% Similarity=0.234 Sum_probs=87.7
Q ss_pred CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCC
Q 044605 122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFP 201 (405)
Q Consensus 122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 201 (405)
+++|+.|.+.++....++. +. .+++|+.|++++|. +..++.++.+++|++|++.++. +..++. .....++
T Consensus 40 l~~L~~L~l~~~~i~~~~~-l~--~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~-l~~~~~-----~~~~~l~ 109 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQG-IQ--YLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQ-LQSLPN-----GVFDKLT 109 (272)
T ss_dssp HTTCCEEECTTSCCCCCTT-GG--GCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSC-CCCCCT-----TTTTTCT
T ss_pred ccceeeeeeCCCCcccccc-cc--cCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCc-cCccCh-----hHhcCCc
Confidence 3455555555554443332 22 45566666665554 4444455555666666665542 333222 0011255
Q ss_pred cccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeec
Q 044605 202 CLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKS 279 (405)
Q Consensus 202 ~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~ 279 (405)
+|++|+++++ .+++..+ ..+..+++|++|++++|... .++...+..+++| ++++
T Consensus 110 ~L~~L~L~~n-~l~~~~~------------------~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 110 NLKELVLVEN-QLQSLPD------------------GVFDKLTNLTYLNLAHNQLQ-----SLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp TCCEEECTTS-CCCCCCT------------------TTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCC-cCCccCH------------------HHhccCCCCCEEECCCCccC-----ccCHHHhccCccCCEEECC
Confidence 5555555553 2332111 22344455555555554322 2333334444444 4444
Q ss_pred CCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCC
Q 044605 280 RTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPIL 347 (405)
Q Consensus 280 ~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l 347 (405)
+| .++.+|. .+..+++|+.|++++|.++.++...+ .++++|++|++++|+..
T Consensus 166 ~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 166 YN----------QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF------DRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp SS----------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT------TTCTTCCEEECCSSCBC
T ss_pred CC----------CcCccCHHHhcCCccCCEEECCCCcCCccCHHHH------hCCcCCCEEEccCCCcc
Confidence 44 2233333 34567777777777777776665433 56677777777776543
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.47 E-value=5.8e-13 Score=121.07 Aligned_cols=196 Identities=18% Similarity=0.151 Sum_probs=141.7
Q ss_pred CCCCcccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCcc
Q 044605 136 TKFPAWLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSK 213 (405)
Q Consensus 136 ~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 213 (405)
..+|..+ .++|++|++++|. ++.++ .+..+++|++|++.++. +..++. .....+++|++|+++++ .
T Consensus 20 ~~ip~~l----~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~L~~n-~ 87 (276)
T 2z62_A 20 YKIPDNL----PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIED-----GAYQSLSHLSTLILTGN-P 87 (276)
T ss_dssp SSCCSSS----CTTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCC-CCEECT-----TTTTTCTTCCEEECTTC-C
T ss_pred cccCCCC----CCCccEEECCCCc-ccccCHhHhccccCCcEEECCCCc-CCccCH-----HHccCCcCCCEEECCCC-c
Confidence 4456533 3679999999987 66665 48889999999999874 555543 11234899999999986 4
Q ss_pred ccccCCC---CCCcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccc-cCCCCCCCCC--eeecCCCCc
Q 044605 214 LKGRLPQ---HFSSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVE-AGIFDSSNPG--PEKSRTEVL 284 (405)
Q Consensus 214 l~~~l~~---~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~-~~~~~~l~~L--l~l~~~~~l 284 (405)
+++..+. .+++|+.|++.++. .+ +..+..+++|++|++++|.... +. +..+..+++| ++++++
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~l~~~~~~l~~L~~L~Ls~N--- 159 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-----FKLPEYFSNLTNLEHLDLSSN--- 159 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC-----CCCCGGGGGCTTCCEEECCSS---
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce-----ecCchhhccCCCCCEEECCCC---
Confidence 4433332 67899999998875 23 3357889999999999986542 22 4467778888 888887
Q ss_pred cEEecCCCCcccc-cccCCCCCcc----EEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcC
Q 044605 285 PWEIGSPDQESLP-EGLHKLSHIT----RISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLP 357 (405)
Q Consensus 285 ~l~i~~~~l~~lp-~~~~~l~~L~----~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~ 357 (405)
.++.++ ..+..+++|+ .|++++|.++.++...+ ...+|++|++++|. ++.++.. ...+
T Consensus 160 -------~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-------~~~~L~~L~L~~n~-l~~~~~~~~~~l~ 224 (276)
T 2z62_A 160 -------KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-------KEIRLKELALDTNQ-LKSVPDGIFDRLT 224 (276)
T ss_dssp -------CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-------CSCCEEEEECCSSC-CSCCCTTTTTTCC
T ss_pred -------CCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-------CCCcccEEECCCCc-eeecCHhHhcccc
Confidence 344444 3455555555 88999999999887633 44589999999975 6777764 4467
Q ss_pred CccEEeecC
Q 044605 358 SVVYLSIYL 366 (405)
Q Consensus 358 ~L~~L~i~~ 366 (405)
+|++|++++
T Consensus 225 ~L~~L~l~~ 233 (276)
T 2z62_A 225 SLQKIWLHT 233 (276)
T ss_dssp SCCEEECCS
T ss_pred cccEEEccC
Confidence 999999994
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=2.4e-13 Score=133.88 Aligned_cols=212 Identities=12% Similarity=0.048 Sum_probs=157.5
Q ss_pred CCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCC
Q 044605 146 SFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFS 223 (405)
Q Consensus 146 ~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~ 223 (405)
.+++|+.|++++|. ++.++ .++.+++|++|+++++. +...+.++ .+++|++|+++++ .+++ +| ..+
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~-------~l~~L~~L~Ls~N-~l~~-l~-~~~ 99 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLDLE-------SLSTLRTLDLNNN-YVQE-LL-VGP 99 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSC-CEEEEECT-------TCTTCCEEECCSS-EEEE-EE-ECT
T ss_pred cCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccc-------cCCCCCEEEecCC-cCCC-CC-CCC
Confidence 34589999999987 66665 48899999999999875 44333333 4899999999996 5663 44 348
Q ss_pred cccEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcc-ccccc
Q 044605 224 SLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQES-LPEGL 300 (405)
Q Consensus 224 ~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~-lp~~~ 300 (405)
+|+.|++++|.--......+++|+.|++++|... .+++..+..+++| |+++++ .++. .|..+
T Consensus 100 ~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N----------~l~~~~~~~l 164 (487)
T 3oja_A 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKIT-----MLRDLDEGCRSRVQYLDLKLN----------EIDTVNFAEL 164 (487)
T ss_dssp TCCEEECCSSCCCCEEECCCSSCEEEECCSSCCC-----SGGGBCGGGGSSEEEEECTTS----------CCCEEEGGGG
T ss_pred CcCEEECcCCcCCCCCccccCCCCEEECCCCCCC-----CCCchhhcCCCCCCEEECCCC----------CCCCcChHHH
Confidence 9999999987633222345789999999999765 3445567777788 888887 3343 45566
Q ss_pred C-CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCcchHHHhhcCc
Q 044605 301 H-KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDE 378 (405)
Q Consensus 301 ~-~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~ 378 (405)
. .+++|+.|++++|.++.++.. ..+++|++|++++|. ++.+|.. ..+++|+.|+++++. +.. -
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~--------~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~-----l 229 (487)
T 3oja_A 165 AASSDTLEHLNLQYNFIYDVKGQ--------VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVL-----I 229 (487)
T ss_dssp GGGTTTCCEEECTTSCCCEEECC--------CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCE-----E
T ss_pred hhhCCcccEEecCCCcccccccc--------ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-Ccc-----c
Confidence 5 799999999999999988654 568999999999975 6667655 556799999999984 211 1
Q ss_pred ccccccccccCeeEecceEee
Q 044605 379 REYCHLVADIPFVQLNHKLVF 399 (405)
Q Consensus 379 ~~~~~~i~~i~~~~~~~~~~~ 399 (405)
...+....+++.+.+.++.+.
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBC
T ss_pred chhhccCCCCCEEEcCCCCCc
Confidence 223455678888888887664
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.44 E-value=4.1e-13 Score=121.89 Aligned_cols=175 Identities=15% Similarity=0.094 Sum_probs=119.1
Q ss_pred cCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCC
Q 044605 118 MLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQ 195 (405)
Q Consensus 118 ~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 195 (405)
.+..+++|+.|++.++....++ .+. .+++|+.|++++|. ++.++. ++.+++|++|++.++. +..++. .
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~~-~l~--~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~ 127 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDIS-ALK--ELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQ-LQSLPD-----G 127 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCCG-GGT--TCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCT-----T
T ss_pred ccccCCCCcEEECCCCCCCCch-hhc--CCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCc-CCccCH-----H
Confidence 4566889999999998876654 344 78999999999987 666665 7899999999999875 444433 1
Q ss_pred CCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccccCCC
Q 044605 196 AAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIF 269 (405)
Q Consensus 196 ~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 269 (405)
....+++|++|+++++ .+++..+. .+++|+.|++++|. .+ +..+..+++|++|++++|..
T Consensus 128 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l------------- 193 (272)
T 3rfs_A 128 VFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL------------- 193 (272)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-------------
T ss_pred HhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC-------------
Confidence 1234889999999886 55532221 35566666666553 12 22244555666666655532
Q ss_pred CCCCCCeeecCCCCccEEecCCCCcccc-cccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCc
Q 044605 270 DSSNPGPEKSRTEVLPWEIGSPDQESLP-EGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILK 348 (405)
Q Consensus 270 ~~l~~Ll~l~~~~~l~l~i~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~ 348 (405)
+.+| ..+..+++|+.|++++|.+. +.++.|+.|+++.|....
T Consensus 194 ------------------------~~~~~~~~~~l~~L~~L~l~~N~~~-------------~~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 194 ------------------------KSVPDGVFDRLTSLQYIWLHDNPWD-------------CTCPGIRYLSEWINKHSG 236 (272)
T ss_dssp ------------------------SCCCTTTTTTCTTCCEEECCSSCBC-------------CCTTTTHHHHHHHHHTGG
T ss_pred ------------------------CccCHHHHhCCcCCCEEEccCCCcc-------------ccCcHHHHHHHHHHhCCC
Confidence 2333 34678899999999987653 346788888888877666
Q ss_pred ccCCC
Q 044605 349 SFPEN 353 (405)
Q Consensus 349 ~l~~~ 353 (405)
.+|..
T Consensus 237 ~ip~~ 241 (272)
T 3rfs_A 237 VVRNS 241 (272)
T ss_dssp GBBCT
T ss_pred cccCc
Confidence 77754
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.42 E-value=9.6e-16 Score=149.88 Aligned_cols=267 Identities=14% Similarity=0.039 Sum_probs=124.6
Q ss_pred HhccCCCCCCccEEEEEeeCCCCC-Cc----ccCCCCCCCccEEEEEcCCCCCcC-----C-CCCCCCCccEEeecCCCC
Q 044605 115 VLEMLKPHYGLKELKVQNYGGTKF-PA----WLGQSSFENLVVLRFRNCNQCTSL-----P-SVGHLPLLKNLVIKGMGR 183 (405)
Q Consensus 115 ~~~~l~~~~~L~~L~l~~~~~~~l-p~----~~~~~~l~~L~~L~l~~~~~~~~l-----~-~l~~l~~L~~L~l~~~~~ 183 (405)
+...+..+++|+.|++.++..... +. .+. ...++|++|++++|. ++.. + .+..+++|++|++.++.
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~- 181 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL-DPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND- 181 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT-STTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB-
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHh-cCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC-
Confidence 344455566666666665543211 11 111 123456666666664 3321 1 13345666666666654
Q ss_pred CeeeCC--CCCCCCCCCCCCcccEEeeccCcccccc----CCC---CCCcccEEEEeccCCc--------cccCCCCCCc
Q 044605 184 MAKAGT--TGGDQQAAKGFPCLRELSIINCSKLKGR----LPQ---HFSSLERIVIMSCEQL--------LVSCTTLPLL 246 (405)
Q Consensus 184 l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~----l~~---~~~~L~~L~l~~c~~l--------~~~l~~l~~L 246 (405)
+...+. ++. ......++|++|++++| .+.+. ++. .+++|++|++++|.-- +..+..+++|
T Consensus 182 i~~~~~~~l~~--~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 182 INEAGVRVLCQ--GLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258 (461)
T ss_dssp CHHHHHHHHHH--HHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred cchHHHHHHHH--HHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence 221110 000 00001346677777665 23211 121 3566777777665311 1122346677
Q ss_pred ceEEEcCcCCcccccc-ccccCCCCCCCCC--eeecCCCCccEEecCCCCccccccc-CCCCCccEEEEeCCcccccccC
Q 044605 247 CELEIDGFGEVAWINR-PVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGL-HKLSHITRISIVGSYLVSFPKG 322 (405)
Q Consensus 247 ~~L~l~~~~~l~~~~~-~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~-~~l~~L~~L~l~~~~l~~l~~~ 322 (405)
++|++++|..... +. .++ ..+..+++| ++++++.... .....+...+ ...++|+.|++++|.++....
T Consensus 259 ~~L~L~~n~l~~~-~~~~l~-~~l~~~~~L~~L~Ls~n~i~~-----~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~- 330 (461)
T 1z7x_W 259 RTLWIWECGITAK-GCGDLC-RVLRAKESLKELSLAGNELGD-----EGARLLCETLLEPGCQLESLWVKSCSFTAACC- 330 (461)
T ss_dssp CEEECTTSCCCHH-HHHHHH-HHHHHCTTCCEEECTTCCCHH-----HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH-
T ss_pred eEEECcCCCCCHH-HHHHHH-HHHhhCCCcceEECCCCCCch-----HHHHHHHHHhccCCccceeeEcCCCCCchHHH-
Confidence 7777776633210 00 011 123334455 5665552110 0000111122 133577777777766654210
Q ss_pred CCCCccc-CCCCCCcCEEeeecCCCCcccC-C----C--CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEec
Q 044605 323 GLESLSF-VRNLTSLERLELSRCPILKSFP-E----N--GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLN 394 (405)
Q Consensus 323 ~~~~l~~-l~~l~~L~~L~l~~c~~l~~l~-~----~--~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~ 394 (405)
..++. +..+++|++|++++|. +++.. . . ...++|++|++++|. +.......-...+....+++.+.+.
T Consensus 331 --~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 331 --SHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp --HHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred --HHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECC
Confidence 00110 4556788888888874 44331 1 1 113588888888883 3321111112233446788888888
Q ss_pred ceEee
Q 044605 395 HKLVF 399 (405)
Q Consensus 395 ~~~~~ 399 (405)
++.|.
T Consensus 407 ~N~i~ 411 (461)
T 1z7x_W 407 NNCLG 411 (461)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 87664
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=1.1e-14 Score=136.24 Aligned_cols=196 Identities=14% Similarity=0.155 Sum_probs=111.5
Q ss_pred CCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCc--CCC-CCCCCCccEEeecCCCCCeeeCC-CCCCCCCCC
Q 044605 123 YGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTS--LPS-VGHLPLLKNLVIKGMGRMAKAGT-TGGDQQAAK 198 (405)
Q Consensus 123 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~--l~~-l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~ 198 (405)
.+++.+++.++.....+..+. .+++|++|++++|. +.. ++. +..+++|++|++.+|.-....+. ++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~------- 139 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA------- 139 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCC--CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-------
T ss_pred ccceEEEcCCccccccchhhc--cCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-------
Confidence 467777777665443333344 57888888888876 332 443 66788888888887742222222 22
Q ss_pred CCCcccEEeeccCcccccc-CCC---CCCcccEEEEeccCCc-----cccCCCCC-CcceEEEcCcC-CccccccccccC
Q 044605 199 GFPCLRELSIINCSKLKGR-LPQ---HFSSLERIVIMSCEQL-----LVSCTTLP-LLCELEIDGFG-EVAWINRPVEAG 267 (405)
Q Consensus 199 ~~~~L~~L~l~~~~~l~~~-l~~---~~~~L~~L~l~~c~~l-----~~~l~~l~-~L~~L~l~~~~-~l~~~~~~~~~~ 267 (405)
.+++|++|++++|..+++. ++. .+++|++|++++|..+ +..+..++ +|++|++++|. .+... .++ .
T Consensus 140 ~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~--~l~-~ 216 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS--DLS-T 216 (336)
T ss_dssp TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH--HHH-H
T ss_pred cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH--HHH-H
Confidence 2788888888887655531 332 5788888888887433 34455678 88888888874 22100 111 1
Q ss_pred CCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecC
Q 044605 268 IFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRC 344 (405)
Q Consensus 268 ~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c 344 (405)
.+..+++| +++++|..++ ...+..+..+++|+.|+++++. .+...++ ..+.++++|++|++++|
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~--------~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~---~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLK--------NDCFQEFFQLNYLQHLSLSRCY--DIIPETL---LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCC--------GGGGGGGGGCTTCCEEECTTCT--TCCGGGG---GGGGGCTTCCEEECTTS
T ss_pred HHhhCCCCCEEeCCCCCcCC--------HHHHHHHhCCCCCCEeeCCCCC--CCCHHHH---HHHhcCCCCCEEeccCc
Confidence 22334445 5555553221 1334455566666666666642 1111111 11345666666666665
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.41 E-value=6.2e-13 Score=123.22 Aligned_cols=204 Identities=16% Similarity=0.137 Sum_probs=121.3
Q ss_pred CCCCccEEEEEcCCCCCcCCC-C--CCCCCccEEeecCCCCCeeeCC-CCCCCCCCCCCCcccEEeeccCccccccCCC-
Q 044605 146 SFENLVVLRFRNCNQCTSLPS-V--GHLPLLKNLVIKGMGRMAKAGT-TGGDQQAAKGFPCLRELSIINCSKLKGRLPQ- 220 (405)
Q Consensus 146 ~l~~L~~L~l~~~~~~~~l~~-l--~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~- 220 (405)
.+++|++|++++|.-...+|. + +.+++|++|+++++. +..++. ++. .....+++|++|+++++ .+.+..+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~--l~~~~~~~L~~L~L~~N-~l~~~~~~~ 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAE--LQQWLKPGLKVLSIAQA-HSLNFSCEQ 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHH--HHTTCCTTCCEEEEESC-SCCCCCTTT
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHH--HHHhhcCCCcEEEeeCC-CCccchHHH
Confidence 367888888888873334554 3 678888888887754 332222 111 00001266666666664 33322221
Q ss_pred --CCCcccEEEEeccCCc-----cccC--CCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCC
Q 044605 221 --HFSSLERIVIMSCEQL-----LVSC--TTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSP 291 (405)
Q Consensus 221 --~~~~L~~L~l~~c~~l-----~~~l--~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~ 291 (405)
.+++|++|+++++.-. +..+ ..+++|++|++++|....
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~--------------------------------- 215 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET--------------------------------- 215 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC---------------------------------
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc---------------------------------
Confidence 3455555555544311 1122 444555555555442110
Q ss_pred CCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCcch
Q 044605 292 DQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDL 370 (405)
Q Consensus 292 ~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 370 (405)
+..++. .+.++++|+.|++++|.++..+.... +..+++|++|++++|. ++.+|.... ++|++|+++++. +
T Consensus 216 -~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~~l~~L~~L~Ls~N~-l~~ip~~~~-~~L~~L~Ls~N~-l 286 (312)
T 1wwl_A 216 -PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS-----CDWPSQLNSLNLSFTG-LKQVPKGLP-AKLSVLDLSYNR-L 286 (312)
T ss_dssp -HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC-----CCCCTTCCEEECTTSC-CSSCCSSCC-SEEEEEECCSSC-C
T ss_pred -hHHHHHHHHhcCCCCCEEECCCCcCCcccchhh-----hhhcCCCCEEECCCCc-cChhhhhcc-CCceEEECCCCC-C
Confidence 012232 23588999999999999987552111 4668999999999975 678887533 799999999983 3
Q ss_pred HHHhhcCcccccccccccCeeEecceEeeCC
Q 044605 371 EEKCKKDEREYCHLVADIPFVQLNHKLVFDP 401 (405)
Q Consensus 371 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~ 401 (405)
+.. ..+....+++.+.+.++.|.+.
T Consensus 287 ~~~------p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 287 DRN------PSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CSC------CCTTTSCEEEEEECTTCTTTCC
T ss_pred CCC------hhHhhCCCCCEEeccCCCCCCC
Confidence 221 2256678888899988877653
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.40 E-value=2.4e-12 Score=119.11 Aligned_cols=195 Identities=22% Similarity=0.217 Sum_probs=119.0
Q ss_pred CCCccEEEEEeeCCC-CCCcccCCCCCCCccEEEEEcCCCCCcCCC-----CCCCCCccEEeecCCCCCeeeCCCCCCCC
Q 044605 122 HYGLKELKVQNYGGT-KFPAWLGQSSFENLVVLRFRNCNQCTSLPS-----VGHLPLLKNLVIKGMGRMAKAGTTGGDQQ 195 (405)
Q Consensus 122 ~~~L~~L~l~~~~~~-~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-----l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 195 (405)
+++|++|++.++... ..|..+....+++|+.|++++|......+. +..+++|++|++.++.- ..++. .
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~-----~ 163 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSC-----E 163 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCT-----T
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhH-----H
Confidence 355899999887653 445444113688899999998873333332 34688899999887653 33322 1
Q ss_pred CCCCCCcccEEeeccCcccc------ccCCCCCCcccEEEEeccCC--ccc----cCCCCCCcceEEEcCcCCccccccc
Q 044605 196 AAKGFPCLRELSIINCSKLK------GRLPQHFSSLERIVIMSCEQ--LLV----SCTTLPLLCELEIDGFGEVAWINRP 263 (405)
Q Consensus 196 ~~~~~~~L~~L~l~~~~~l~------~~l~~~~~~L~~L~l~~c~~--l~~----~l~~l~~L~~L~l~~~~~l~~~~~~ 263 (405)
....+++|++|+++++.-.. ......+++|++|++++|.- ++. .+..+++|++|++++|....
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~----- 238 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA----- 238 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC-----
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc-----
Confidence 12247888888888864221 01123567777777777642 122 13456777777777764432
Q ss_pred cccCCCCCCCCCeeecCCCCccEEecCCCCcccccccCC---CCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEe
Q 044605 264 VEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHK---LSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLE 340 (405)
Q Consensus 264 ~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~~~~---l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~ 340 (405)
..|..+.. +++|+.|++++|+++.+|.. + .++|++|+
T Consensus 239 -------------------------------~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~-------~--~~~L~~L~ 278 (310)
T 4glp_A 239 -------------------------------TVNPSAPRCMWSSALNSLNLSFAGLEQVPKG-------L--PAKLRVLD 278 (310)
T ss_dssp -------------------------------CCCSCCSSCCCCTTCCCEECCSSCCCSCCSC-------C--CSCCSCEE
T ss_pred -------------------------------cchhhHHhccCcCcCCEEECCCCCCCchhhh-------h--cCCCCEEE
Confidence 11333333 36777788877777777654 2 26777888
Q ss_pred eecCCCCcccCCCCCcCCccEEeecCCc
Q 044605 341 LSRCPILKSFPENGLLPSVVYLSIYLCP 368 (405)
Q Consensus 341 l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 368 (405)
+++| .++.+|....+++|+.|++++++
T Consensus 279 Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 279 LSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred CCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 8775 35555544445677777777764
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=7e-12 Score=112.28 Aligned_cols=172 Identities=21% Similarity=0.274 Sum_probs=93.4
Q ss_pred CccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCC
Q 044605 124 GLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFP 201 (405)
Q Consensus 124 ~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 201 (405)
..+.++..++....+|..+. ++++.|++++|. +..++ .+..+++|++|++.++. +..++. .....++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~----~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~~~l~ 83 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP----ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQ-LQTLSA-----GVFDDLT 83 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC----TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCT-----TTTTTCT
T ss_pred CCeEEecCCCCccccCCCCC----CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCc-CCccCH-----hHhccCC
Confidence 34556666666666665443 567777777766 44443 26667777777777653 333322 0112366
Q ss_pred cccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeec
Q 044605 202 CLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKS 279 (405)
Q Consensus 202 ~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~ 279 (405)
+|++|+++++ .+++ ++ +..|..+++|++|++++|... .++...|..+++| |+++
T Consensus 84 ~L~~L~L~~n-~l~~-~~-----------------~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 84 ELGTLGLANN-QLAS-LP-----------------LGVFDHLTQLDKLYLGGNQLK-----SLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp TCCEEECTTS-CCCC-CC-----------------TTTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCC-cccc-cC-----------------hhHhcccCCCCEEEcCCCcCC-----CcChhHhccCCcccEEECc
Confidence 6777776664 3332 22 123344555555555555322 2333333334444 4443
Q ss_pred CCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605 280 RTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI 346 (405)
Q Consensus 280 ~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~ 346 (405)
++ +++.+|. .+..+++|+.|++++|.++.++...| .++++|++|++++|+.
T Consensus 140 ~N----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 140 TN----------QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF------DRLGKLQTITLFGNQF 191 (251)
T ss_dssp SS----------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT------TTCTTCCEEECCSCCB
T ss_pred CC----------cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH------hCCCCCCEEEeeCCce
Confidence 33 2234443 45667777777777777776665433 5666777777777653
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.39 E-value=5.9e-15 Score=138.15 Aligned_cols=44 Identities=18% Similarity=0.358 Sum_probs=26.5
Q ss_pred ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccC
Q 044605 299 GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFP 351 (405)
Q Consensus 299 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~ 351 (405)
.+.++++|+.|+++++ +++.++..+. ..+..|++++|...+..|
T Consensus 267 ~l~~~~~L~~L~l~~~----i~~~~~~~l~-----~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI----VPDGTLQLLK-----EALPHLQINCSHFTTIAR 310 (336)
T ss_dssp GGGGCTTCCEEECTTS----SCTTCHHHHH-----HHSTTSEESCCCSCCTTC
T ss_pred HHhcCCCCCEEeccCc----cCHHHHHHHH-----hhCcceEEecccCccccC
Confidence 4667899999999987 5554432222 235566676654433344
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.38 E-value=1.1e-11 Score=116.64 Aligned_cols=214 Identities=16% Similarity=0.182 Sum_probs=159.9
Q ss_pred cEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcc
Q 044605 126 KELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCL 203 (405)
Q Consensus 126 ~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 203 (405)
+.++-.++....+|..+ .+++++|++++|. ++.+|. +..+++|++|+++++...+.++. .....++++
T Consensus 12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~-----~~f~~L~~l 81 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL----PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEA-----DVFSNLPKL 81 (350)
T ss_dssp TEEEEESTTCCSCCTTC----CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECT-----TSBCSCTTC
T ss_pred CEEEecCCCCCccCcCc----CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccCh-----hHhhcchhh
Confidence 34555555667778644 3789999999987 888875 88999999999999876677754 111237788
Q ss_pred cEEeeccCccccccCCC---CCCcccEEEEeccC--Ccc-ccCCCCCCcceEEEcCcCCccccccccccCCCCCCCC-C-
Q 044605 204 RELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QLL-VSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNP-G- 275 (405)
Q Consensus 204 ~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~-L- 275 (405)
.++.+.++..++...|. .+++|+.|+++++. .++ ..+.....+..|++.++..+. .++...|..+.. +
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~----~l~~~~f~~~~~~l~ 157 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH----TIERNSFVGLSFESV 157 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC----EECTTSSTTSBSSCE
T ss_pred hhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc----cccccchhhcchhhh
Confidence 87776666677743343 57899999999875 222 234456678899998887776 777777776653 3
Q ss_pred -eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeC-CcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC
Q 044605 276 -PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVG-SYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN 353 (405)
Q Consensus 276 -l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~-~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~ 353 (405)
++++++ +++.+|.......+|+.|.+.+ |.++.||.+.| .++++|++|++++| .++.+|..
T Consensus 158 ~L~L~~N----------~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f------~~l~~L~~LdLs~N-~l~~lp~~ 220 (350)
T 4ay9_X 158 ILWLNKN----------GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF------HGASGPVILDISRT-RIHSLPSY 220 (350)
T ss_dssp EEECCSS----------CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTT------TTEECCSEEECTTS-CCCCCCSS
T ss_pred hhccccc----------cccCCChhhccccchhHHhhccCCcccCCCHHHh------ccCcccchhhcCCC-CcCccChh
Confidence 666665 6678888777788999999987 89999998765 78889999999996 68889875
Q ss_pred CCcCCccEEeecCCcchH
Q 044605 354 GLLPSVVYLSIYLCPDLE 371 (405)
Q Consensus 354 ~~~~~L~~L~i~~c~~l~ 371 (405)
. +.+|+.|.+.+|..++
T Consensus 221 ~-~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 221 G-LENLKKLRARSTYNLK 237 (350)
T ss_dssp S-CTTCCEEECTTCTTCC
T ss_pred h-hccchHhhhccCCCcC
Confidence 4 4588888888876553
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.36 E-value=3.2e-15 Score=150.91 Aligned_cols=196 Identities=17% Similarity=0.177 Sum_probs=113.3
Q ss_pred CCCCccEEEEEcCCCCCc--CCC-CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeecc--------Cccc
Q 044605 146 SFENLVVLRFRNCNQCTS--LPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIIN--------CSKL 214 (405)
Q Consensus 146 ~l~~L~~L~l~~~~~~~~--l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~--------~~~l 214 (405)
.+++|++|++++|. ++. ++. +..+++|++|++.+|..-..+.. ....+++|++|++.+ |..+
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~------l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV------LASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH------HHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH------HHHhCCCCCEEEEecCcccccccCCCC
Confidence 46888999998887 443 122 45788899999887622111111 011378889998843 3333
Q ss_pred ccc----CCCCCCcccEEEEeccCCc----cccC-CCCCCcceEEEc-----CcCCccccccccccC-C----CCCCCCC
Q 044605 215 KGR----LPQHFSSLERIVIMSCEQL----LVSC-TTLPLLCELEID-----GFGEVAWINRPVEAG-I----FDSSNPG 275 (405)
Q Consensus 215 ~~~----l~~~~~~L~~L~l~~c~~l----~~~l-~~l~~L~~L~l~-----~~~~l~~~~~~~~~~-~----~~~l~~L 275 (405)
++. +...+++|+.|.+ +|..+ ...+ ..+++|+.|++. +|..+. ..+.+ + +..+++|
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~----~~~~~~~~~~l~~~~~~L 434 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT----LEPLDIGFGAIVEHCKDL 434 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT----CCCTHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc----CCchhhHHHHHHhhCCCc
Confidence 321 1124788888855 44444 1222 247889999998 344443 22211 1 2334455
Q ss_pred --eeecCCCCccEEecCCCCcccccccC-CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccC-
Q 044605 276 --PEKSRTEVLPWEIGSPDQESLPEGLH-KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFP- 351 (405)
Q Consensus 276 --l~l~~~~~l~l~i~~~~l~~lp~~~~-~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~- 351 (405)
+++++ .++ ...+..+. .+++|+.|+++++.+++..-.. + ..++++|++|++++|+. ++..
T Consensus 435 ~~L~L~~--~l~--------~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~---l--~~~~~~L~~L~L~~n~~-~~~~~ 498 (594)
T 2p1m_B 435 RRLSLSG--LLT--------DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH---V--LSGCDSLRKLEIRDCPF-GDKAL 498 (594)
T ss_dssp CEEECCS--SCC--------HHHHHHHHHHCTTCCEEEEESCCSSHHHHHH---H--HHHCTTCCEEEEESCSC-CHHHH
T ss_pred cEEeecC--ccc--------HHHHHHHHHhchhccEeeccCCCCcHHHHHH---H--HhcCCCcCEEECcCCCC-cHHHH
Confidence 55544 221 11122333 4889999999987765421110 0 24688999999999986 3321
Q ss_pred C-C-CCcCCccEEeecCCcc
Q 044605 352 E-N-GLLPSVVYLSIYLCPD 369 (405)
Q Consensus 352 ~-~-~~~~~L~~L~i~~c~~ 369 (405)
. . ..+++|++|++++|+.
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhCCCCCEEeeeCCCC
Confidence 1 1 3356999999999975
No 88
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.35 E-value=1.2e-14 Score=146.64 Aligned_cols=315 Identities=13% Similarity=-0.042 Sum_probs=165.2
Q ss_pred hheeeEEEEEccCCCCc-----cCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChh--hhh
Q 044605 23 EIFVIYLILVGDLTESK-----EMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAE--DAK 95 (405)
Q Consensus 23 ~~~~~L~~L~L~~~~i~-----~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~--~~~ 95 (405)
..+++|++|++++|.++ .++..+.++++|++|++..+... .....+..+.+|+ .+.+.......... ...
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~--~l~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL--ELVGFFKAAANLE-EFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG--GGHHHHHHCTTCC-EEEECBCCCCTTCTTSSSC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH--HHHHHHhhhhHHH-hhcccccccccchHHHHHH
Confidence 34677888888877765 34444567777777764332111 1223344455555 55554321110000 000
Q ss_pred hcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCC--CCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCC
Q 044605 96 EGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTK--FPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPL 172 (405)
Q Consensus 96 ~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~ 172 (405)
...+..+............+...+..+++|+.|++.++.... ++..+. .+++|+.|++.++..-..++. ...+++
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~--~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ--KCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHT--TCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHH--hCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 111111111000000111122334456788999988876221 112223 688899999984432122332 245788
Q ss_pred ccEEeecC----------CCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccC----CCCCCcccEEEEec---cCC
Q 044605 173 LKNLVIKG----------MGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRL----PQHFSSLERIVIMS---CEQ 235 (405)
Q Consensus 173 L~~L~l~~----------~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l----~~~~~~L~~L~l~~---c~~ 235 (405)
|++|++.+ |..+..... ......+++|++|++ .|..+++.. ...+++|+.|++.+ |..
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~----~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~ 418 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGL----IALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREER 418 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHH----HHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred CCEEEeecCccccccccccCccCHHHH----HHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence 99999984 554443211 001123789999998 444554322 22478899999985 334
Q ss_pred ccc---------cCCCCCCcceEEEcCcCC-ccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCC
Q 044605 236 LLV---------SCTTLPLLCELEIDGFGE-VAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKL 303 (405)
Q Consensus 236 l~~---------~l~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l 303 (405)
+.. .+..+++|++|+++.|.. +.. .........+++| |.+++|.... ..++..+.++
T Consensus 419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~---~~~~~~~~~~~~L~~L~L~~n~l~~--------~~~~~~~~~~ 487 (592)
T 3ogk_B 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD---LGLSYIGQYSPNVRWMLLGYVGESD--------EGLMEFSRGC 487 (592)
T ss_dssp CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH---HHHHHHHHSCTTCCEEEECSCCSSH--------HHHHHHHTCC
T ss_pred ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH---HHHHHHHHhCccceEeeccCCCCCH--------HHHHHHHhcC
Confidence 421 244588999999976542 110 1111111234456 6777663210 1345556789
Q ss_pred CCccEEEEeCCcccc--cccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC---CCcCCccEEeecC
Q 044605 304 SHITRISIVGSYLVS--FPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN---GLLPSVVYLSIYL 366 (405)
Q Consensus 304 ~~L~~L~l~~~~l~~--l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~i~~ 366 (405)
++|+.|++++|.++. ++.. ..++++|++|++++|. ++..... ...+.+....+..
T Consensus 488 ~~L~~L~l~~n~l~~~~~~~~-------~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 488 PNLQKLEMRGCCFSERAIAAA-------VTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp TTCCEEEEESCCCBHHHHHHH-------HHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred cccCeeeccCCCCcHHHHHHH-------HHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence 999999999977653 2221 3568999999999997 4443221 2234555554443
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.34 E-value=3.8e-11 Score=107.48 Aligned_cols=172 Identities=22% Similarity=0.273 Sum_probs=119.2
Q ss_pred CCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcccE
Q 044605 148 ENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLER 227 (405)
Q Consensus 148 ~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~ 227 (405)
.+.+.++++++. ++.+|.- -.++++.|++.++. +..+.. .....+++|++|+++++ .+.+ ++
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~-~~~~l~~L~L~~n~-l~~~~~-----~~~~~l~~L~~L~L~~n-~l~~-~~-------- 75 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSG-IPADTEKLDLQSTG-LATLSD-----ATFRGLTKLTWLNLDYN-QLQT-LS-------- 75 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSC-CCTTCCEEECTTSC-CCCCCT-----TTTTTCTTCCEEECTTS-CCCC-CC--------
T ss_pred CCCeEEecCCCC-ccccCCC-CCCCCCEEEccCCC-cCccCH-----hHhcCcccCCEEECCCC-cCCc-cC--------
Confidence 456667776654 5566541 12567777777654 333322 01223666666666663 3331 11
Q ss_pred EEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccc-cCCCC
Q 044605 228 IVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEG-LHKLS 304 (405)
Q Consensus 228 L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~-~~~l~ 304 (405)
+..|..+++|++|++++|... .++...|..+++| |+++++ .++.+|.. +..++
T Consensus 76 ---------~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~N----------~l~~~~~~~~~~l~ 131 (251)
T 3m19_A 76 ---------AGVFDDLTELGTLGLANNQLA-----SLPLGVFDHLTQLDKLYLGGN----------QLKSLPSGVFDRLT 131 (251)
T ss_dssp ---------TTTTTTCTTCCEEECTTSCCC-----CCCTTTTTTCTTCCEEECCSS----------CCCCCCTTTTTTCT
T ss_pred ---------HhHhccCCcCCEEECCCCccc-----ccChhHhcccCCCCEEEcCCC----------cCCCcChhHhccCC
Confidence 345677889999999988655 5677778888888 888887 45667664 67999
Q ss_pred CccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605 305 HITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 305 ~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 368 (405)
+|+.|++++|+++.++...| .++++|++|++++|. ++.++.. ..+++|++|++.+++
T Consensus 132 ~L~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 132 KLKELRLNTNQLQSIPAGAF------DKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTT------TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cccEEECcCCcCCccCHHHc------CcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 99999999999999987554 788999999999974 5666653 456799999999875
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=8.5e-12 Score=107.43 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=23.2
Q ss_pred cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605 300 LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP 345 (405)
Q Consensus 300 ~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~ 345 (405)
+..+++|+.|++++|.+++++ . +.++++|++|++++|+
T Consensus 155 l~~l~~L~~L~l~~n~i~~~~-~-------l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 155 LKTLPELKSLNIQFDGVHDYR-G-------IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGGCSSCCEEECTTBCCCCCT-T-------GGGCSSCCEEEECBC-
T ss_pred hcCCCCCCEEECCCCCCcChH-H-------hccCCCCCEEEeeCcc
Confidence 456666677777666666654 1 3566667777776654
No 91
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.31 E-value=2.8e-15 Score=146.62 Aligned_cols=229 Identities=16% Similarity=0.083 Sum_probs=134.3
Q ss_pred CCCCccEEEEEeeCCCC-----CCcccCCCCCCCccEEEEEcCCCCCcCC--CCC-----CCCCccEEeecCCCCCee--
Q 044605 121 PHYGLKELKVQNYGGTK-----FPAWLGQSSFENLVVLRFRNCNQCTSLP--SVG-----HLPLLKNLVIKGMGRMAK-- 186 (405)
Q Consensus 121 ~~~~L~~L~l~~~~~~~-----lp~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~-----~l~~L~~L~l~~~~~l~~-- 186 (405)
...+|+.|++.+|.... ++..+. .+++|++|++++|. +++.. .+. ..++|++|++.+|. +..
T Consensus 140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~ 215 (461)
T 1z7x_W 140 PQCRLEKLQLEYCSLSAASCEPLASVLR--AKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDN 215 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHH--HCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTH
T ss_pred CCCcceEEECCCCCCCHHHHHHHHHHHh--hCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHH
Confidence 35679999998875432 223333 46889999998887 44321 121 35689999998874 222
Q ss_pred ---eCCCCCCCCCCCCCCcccEEeeccCcccccc--------CCCCCCcccEEEEeccCC-------ccccCCCCCCcce
Q 044605 187 ---AGTTGGDQQAAKGFPCLRELSIINCSKLKGR--------LPQHFSSLERIVIMSCEQ-------LLVSCTTLPLLCE 248 (405)
Q Consensus 187 ---~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--------l~~~~~~L~~L~l~~c~~-------l~~~l~~l~~L~~ 248 (405)
++. ....+++|++|+++++ .+.+. +...+++|++|++++|.- ++..+..+++|++
T Consensus 216 ~~~l~~------~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 288 (461)
T 1z7x_W 216 CRDLCG------IVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288 (461)
T ss_dssp HHHHHH------HHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHHH------HHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcce
Confidence 111 1113788999999886 33321 112478899999988742 2445556889999
Q ss_pred EEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCC
Q 044605 249 LEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLES 326 (405)
Q Consensus 249 L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~ 326 (405)
|++++|.........+........+.| +++++|.... .....++..+..+++|+.|++++|.+++.....+
T Consensus 289 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-----~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l-- 361 (461)
T 1z7x_W 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA-----ACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL-- 361 (461)
T ss_dssp EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG-----GGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH--
T ss_pred EECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch-----HHHHHHHHHHhhCCCccEEEccCCccccccHHHH--
Confidence 999988543200000111111222456 7777773221 0001245566678899999998887765321111
Q ss_pred ccc-CC-CCCCcCEEeeecCCCCc----ccCCC-CCcCCccEEeecCCc
Q 044605 327 LSF-VR-NLTSLERLELSRCPILK----SFPEN-GLLPSVVYLSIYLCP 368 (405)
Q Consensus 327 l~~-l~-~l~~L~~L~l~~c~~l~----~l~~~-~~~~~L~~L~i~~c~ 368 (405)
.. +. ..++|++|++++|..-. .++.. ...++|++|++++|+
T Consensus 362 -~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 362 -CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp -HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred -HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 00 11 25688899998875322 44443 334688899998884
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=9.2e-12 Score=107.22 Aligned_cols=150 Identities=16% Similarity=0.232 Sum_probs=100.6
Q ss_pred CCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcc
Q 044605 146 SFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSL 225 (405)
Q Consensus 146 ~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L 225 (405)
.+++|+.|++++|. +..+|++..+++|++|++.++ .+..++. ...+++|++|+++++ .+.+.
T Consensus 42 ~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~n-~~~~~~~-------l~~l~~L~~L~l~~n-~l~~~-------- 103 (197)
T 4ezg_A 42 QMNSLTYITLANIN-VTDLTGIEYAHNIKDLTINNI-HATNYNP-------ISGLSNLERLRIMGK-DVTSD-------- 103 (197)
T ss_dssp HHHTCCEEEEESSC-CSCCTTGGGCTTCSEEEEESC-CCSCCGG-------GTTCTTCCEEEEECT-TCBGG--------
T ss_pred hcCCccEEeccCCC-ccChHHHhcCCCCCEEEccCC-CCCcchh-------hhcCCCCCEEEeECC-ccCcc--------
Confidence 46778888888776 667777777777777777766 2333222 112555555555553 22211
Q ss_pred cEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCcccccccCCCCC
Q 044605 226 ERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHKLSH 305 (405)
Q Consensus 226 ~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~~~~l~~ 305 (405)
.+..+..+++|++|++++|.... ..|..+..+++
T Consensus 104 ----------~~~~l~~l~~L~~L~Ls~n~i~~------------------------------------~~~~~l~~l~~ 137 (197)
T 4ezg_A 104 ----------KIPNLSGLTSLTLLDISHSAHDD------------------------------------SILTKINTLPK 137 (197)
T ss_dssp ----------GSCCCTTCTTCCEEECCSSBCBG------------------------------------GGHHHHTTCSS
T ss_pred ----------cChhhcCCCCCCEEEecCCccCc------------------------------------HhHHHHhhCCC
Confidence 13455667788888887764331 23456778999
Q ss_pred ccEEEEeCCc-ccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCc
Q 044605 306 ITRISIVGSY-LVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCP 368 (405)
Q Consensus 306 L~~L~l~~~~-l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 368 (405)
|+.|++++|. ++++|. +.++++|++|++++|. +++++....+++|++|++++.+
T Consensus 138 L~~L~L~~n~~i~~~~~--------l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 138 VNSIDLSYNGAITDIMP--------LKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCEEECCSCTBCCCCGG--------GGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred CCEEEccCCCCccccHh--------hcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence 9999999986 888762 5789999999999975 6667644556789999998864
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.30 E-value=7.8e-12 Score=114.59 Aligned_cols=163 Identities=15% Similarity=0.200 Sum_probs=98.4
Q ss_pred CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCC
Q 044605 122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFP 201 (405)
Q Consensus 122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 201 (405)
+++|+.|++.++....++. +. .+++|+.|++++|. ++.++.+..+++|++|++.++. +..++. ...++
T Consensus 45 l~~L~~L~l~~~~i~~~~~-~~--~l~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-------l~~l~ 112 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG-IQ--YLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENK-VKDLSS-------LKDLK 112 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT-GG--GCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCGGG-------GTTCT
T ss_pred cCcccEEEccCCCcccChh-Hh--cCCCCCEEEccCCc-cCCCcccccCCCCCEEECCCCc-CCCChh-------hccCC
Confidence 4567777777766655553 33 57778888887776 5556557777777777777653 333433 22367
Q ss_pred cccEEeeccCccccccCCC--CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCee
Q 044605 202 CLRELSIINCSKLKGRLPQ--HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPE 277 (405)
Q Consensus 202 ~L~~L~l~~~~~l~~~l~~--~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~ 277 (405)
+|++|+++++ .+++ ++. .+++|+.|++++|. .+ ..+..+++|+.|++++|..
T Consensus 113 ~L~~L~L~~n-~i~~-~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l--------------------- 168 (291)
T 1h6t_A 113 KLKSLSLEHN-GISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI--------------------- 168 (291)
T ss_dssp TCCEEECTTS-CCCC-CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC---------------------
T ss_pred CCCEEECCCC-cCCC-ChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcc---------------------
Confidence 7777777765 3332 221 45556666555543 12 3344455555555555422
Q ss_pred ecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605 278 KSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP 345 (405)
Q Consensus 278 l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~ 345 (405)
+.++. +..+++|+.|++++|.+++++. +..+++|+.|++++|+
T Consensus 169 ----------------~~~~~-l~~l~~L~~L~L~~N~i~~l~~--------l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 169 ----------------SDIVP-LAGLTKLQNLYLSKNHISDLRA--------LAGLKNLDVLELFSQE 211 (291)
T ss_dssp ----------------CCCGG-GTTCTTCCEEECCSSCCCBCGG--------GTTCTTCSEEEEEEEE
T ss_pred ----------------ccchh-hcCCCccCEEECCCCcCCCChh--------hccCCCCCEEECcCCc
Confidence 33333 6677777777777777776643 3667777777777754
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=3.8e-11 Score=119.69 Aligned_cols=178 Identities=18% Similarity=0.121 Sum_probs=130.5
Q ss_pred CCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCc
Q 044605 123 YGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPC 202 (405)
Q Consensus 123 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 202 (405)
.+++.|++.++....+|..+ +++|+.|++++|. ++.+| +.+++|++|+++++. +..++. ...+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l----~~~L~~L~Ls~N~-l~~ip--~~l~~L~~L~Ls~N~-l~~ip~---------l~~~ 121 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL----PPQITVLEITQNA-LISLP--ELPASLEYLDACDNR-LSTLPE---------LPAS 121 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC----CTTCSEEECCSSC-CSCCC--CCCTTCCEEECCSSC-CSCCCC---------CCTT
T ss_pred CCccEEEeCCCCCCccCHhH----cCCCCEEECcCCC-Ccccc--cccCCCCEEEccCCC-CCCcch---------hhcC
Confidence 47999999998877787754 3789999999987 77888 678999999999874 444543 1239
Q ss_pred ccEEeeccCccccccCCCCCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eee
Q 044605 203 LRELSIINCSKLKGRLPQHFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEK 278 (405)
Q Consensus 203 L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l 278 (405)
|++|+++++ .+++ +|..+++|+.|+++++. .+|. .+++|+.|++++|... .+|. +. ++| |++
T Consensus 122 L~~L~Ls~N-~l~~-lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~-----~lp~--l~--~~L~~L~L 187 (571)
T 3cvr_A 122 LKHLDVDNN-QLTM-LPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLT-----FLPE--LP--ESLEALDV 187 (571)
T ss_dssp CCEEECCSS-CCSC-CCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-----CCCC--CC--TTCCEEEC
T ss_pred CCEEECCCC-cCCC-CCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCC-----Ccch--hh--CCCCEEEC
Confidence 999999985 5664 66678899999998864 2333 4679999999998644 3444 33 556 777
Q ss_pred cCCCCccEEecCCCCcccccccCCCCCc-------cEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccC
Q 044605 279 SRTEVLPWEIGSPDQESLPEGLHKLSHI-------TRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFP 351 (405)
Q Consensus 279 ~~~~~l~l~i~~~~l~~lp~~~~~l~~L-------~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~ 351 (405)
+++ +++.+|. +.. +| +.|++++|.++.||.. +..+++|+.|++++|+..+.+|
T Consensus 188 s~N----------~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~-------l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 188 STN----------LLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPEN-------ILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CSS----------CCSSCCC-CC----------CCEEEECCSSCCCCCCGG-------GGGSCTTEEEECCSSSCCHHHH
T ss_pred cCC----------CCCchhh-HHH--hhhcccccceEEecCCCcceecCHH-------HhcCCCCCEEEeeCCcCCCcCH
Confidence 666 5567776 443 66 8899999989888876 4568889999999887655444
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.25 E-value=2.9e-11 Score=110.76 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=118.3
Q ss_pred cCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCC
Q 044605 118 MLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAA 197 (405)
Q Consensus 118 ~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 197 (405)
.+..+++|+.|++.++....++. +. .+++|+.|++++|. ++.++.++.+++|++|+++++. +..++. .
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~-l~--~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~-i~~~~~-------l 130 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKP-LA--NLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNG-ISDING-------L 130 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSC-CCCCGG-------G
T ss_pred hHhcCCCCCEEEccCCccCCCcc-cc--cCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCc-CCCChh-------h
Confidence 35568899999999998777766 55 79999999999987 7788889999999999999874 444443 3
Q ss_pred CCCCcccEEeeccCccccccCCC--CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCC
Q 044605 198 KGFPCLRELSIINCSKLKGRLPQ--HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSN 273 (405)
Q Consensus 198 ~~~~~L~~L~l~~~~~l~~~l~~--~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~ 273 (405)
..+++|++|+++++ .+++ ++. .+++|+.|++++|. .++. +..+++|+.|++++|...
T Consensus 131 ~~l~~L~~L~l~~n-~l~~-~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~---------------- 191 (291)
T 1h6t_A 131 VHLPQLESLYLGNN-KITD-ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS---------------- 191 (291)
T ss_dssp GGCTTCCEEECCSS-CCCC-CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC----------------
T ss_pred cCCCCCCEEEccCC-cCCc-chhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC----------------
Confidence 34899999999986 4543 332 68999999999875 3333 788999999999987332
Q ss_pred CCeeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCccccccc
Q 044605 274 PGPEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPK 321 (405)
Q Consensus 274 ~Ll~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~ 321 (405)
.+| .+..+++|+.|++++|.+...|.
T Consensus 192 ---------------------~l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 192 ---------------------DLR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp ---------------------BCG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred ---------------------CCh-hhccCCCCCEEECcCCcccCCcc
Confidence 233 36788999999999988877654
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.24 E-value=4e-11 Score=110.87 Aligned_cols=209 Identities=13% Similarity=0.050 Sum_probs=116.5
Q ss_pred CCCccEEEEEcCCCCCcCCC-C--CCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCC
Q 044605 147 FENLVVLRFRNCNQCTSLPS-V--GHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFS 223 (405)
Q Consensus 147 l~~L~~L~l~~~~~~~~l~~-l--~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~ 223 (405)
+++|++|++++|......|. + +.+++|++|+++++.-....+... ......+++|++|+++++ .+.+..
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~--~~~~~~~~~L~~L~Ls~n-~l~~~~----- 161 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA--ELQQWLKPGLKVLSIAQA-HSPAFS----- 161 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH--HHHTTBCSCCCEEEEECC-SSCCCC-----
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH--HHHhhhccCCCEEEeeCC-Ccchhh-----
Confidence 35577777777763333333 3 667777777776654221111000 000012455555555543 222111
Q ss_pred cccEEEEeccCCccccCCCCCCcceEEEcCcCCcccccccccc-CCCCCCCCC--eeecCCCCccEEecCCCCccccc--
Q 044605 224 SLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEA-GIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPE-- 298 (405)
Q Consensus 224 ~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~-~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~-- 298 (405)
+..+..+++|++|++++|+..+.. .++. ..+..+++| +++++| +++.++.
T Consensus 162 -------------~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~~~~l~~L~~L~Ls~N----------~l~~l~~~~ 216 (310)
T 4glp_A 162 -------------CEQVRAFPALTSLDLSDNPGLGER--GLMAALCPHKFPAIQNLALRNT----------GMETPTGVC 216 (310)
T ss_dssp -------------TTSCCCCTTCCEEECCSCTTCHHH--HHHTTSCTTSSCCCCSCBCCSS----------CCCCHHHHH
T ss_pred -------------HHHhccCCCCCEEECCCCCCccch--hhhHHHhhhcCCCCCEEECCCC----------CCCchHHHH
Confidence 234445566666666665432100 0111 112344444 555555 3333333
Q ss_pred -c-cCCCCCccEEEEeCCccccc-ccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCcchHHHhh
Q 044605 299 -G-LHKLSHITRISIVGSYLVSF-PKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDLEEKCK 375 (405)
Q Consensus 299 -~-~~~l~~L~~L~l~~~~l~~l-~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~~~~ 375 (405)
. +.++++|+.|++++|.++.+ |.. + ..+..+++|++|++++| .++.+|... +++|++|+++++. +...
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~---~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N~-l~~~-- 287 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRATVNPS-A---PRCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSNR-LNRA-- 287 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCCCCSC-C---SSCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSCC-CCSC--
T ss_pred HHHHhcCCCCCEEECCCCCCCccchhh-H---HhccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCCc-CCCC--
Confidence 2 46889999999999999987 543 1 11223379999999996 567888753 4799999999984 2110
Q ss_pred cCcccccccccccCeeEecceEeeCC
Q 044605 376 KDEREYCHLVADIPFVQLNHKLVFDP 401 (405)
Q Consensus 376 ~~~~~~~~~i~~i~~~~~~~~~~~~~ 401 (405)
.....+.+++.+.+.++.|.++
T Consensus 288 ----~~~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 288 ----PQPDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp ----CCTTSCCCCSCEECSSTTTSCC
T ss_pred ----chhhhCCCccEEECcCCCCCCC
Confidence 2245568899999998887653
No 97
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.23 E-value=1.4e-14 Score=146.27 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=36.2
Q ss_pred CCCcCEEeeecCCCCccc-CCC--CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEe
Q 044605 333 LTSLERLELSRCPILKSF-PEN--GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLV 398 (405)
Q Consensus 333 l~~L~~L~l~~c~~l~~l-~~~--~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 398 (405)
+++|++|++++|.. ++. ... ..+++|++|++++|+- ...... +......+++.+.+.+..+
T Consensus 455 ~~~L~~L~L~~~~i-~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~---~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGD-SDLGMHHVLSGCDSLRKLEIRDCPF-GDKALL---ANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCS-SHHHHHHHHHHCTTCCEEEEESCSC-CHHHHH---HTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCC-cHHHHHHHHhcCCCcCEEECcCCCC-cHHHHH---HHHHhCCCCCEEeeeCCCC
Confidence 78899999988763 322 111 2257999999999974 221110 1112346677777766544
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.22 E-value=1.9e-11 Score=123.10 Aligned_cols=121 Identities=14% Similarity=0.165 Sum_probs=75.3
Q ss_pred CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCC
Q 044605 122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFP 201 (405)
Q Consensus 122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 201 (405)
+.+|+.|++.++....+|. +. .+++|+.|++++|. +..++.+..+++|+.|++.++. +..++. ...++
T Consensus 42 L~~L~~L~l~~n~i~~l~~-l~--~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~-------l~~l~ 109 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG-IQ--YLPNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDENK-IKDLSS-------LKDLK 109 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT-GG--GCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSC-CCCCTT-------STTCT
T ss_pred CCCCCEEECcCCCCCCChH-Hc--cCCCCCEEEeeCCC-CCCChhhccCCCCCEEECcCCC-CCCChh-------hccCC
Confidence 4567777777766666653 33 57888888887776 6666667778888888887753 444433 23377
Q ss_pred cccEEeeccCccccccCCC--CCCcccEEEEeccCCc-cccCCCCCCcceEEEcCcCC
Q 044605 202 CLRELSIINCSKLKGRLPQ--HFSSLERIVIMSCEQL-LVSCTTLPLLCELEIDGFGE 256 (405)
Q Consensus 202 ~L~~L~l~~~~~l~~~l~~--~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~ 256 (405)
+|++|+++++ .+.+ ++. .+++|+.|++++|.-- ...+..+++|+.|++++|..
T Consensus 110 ~L~~L~Ls~N-~l~~-l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 110 KLKSLSLEHN-GISD-INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp TCCEEECTTS-CCCC-CGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCC
T ss_pred CCCEEEecCC-CCCC-CccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcC
Confidence 7888887775 3332 332 4666677766665311 14455566666666666643
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.20 E-value=4.4e-13 Score=128.01 Aligned_cols=185 Identities=12% Similarity=0.119 Sum_probs=100.0
Q ss_pred hccCCCCCCccEEEEEeeCCCC-----CCcccCCCCCCCccEEEEEcCCCCCcC-----CC-CCCC---------CCccE
Q 044605 116 LEMLKPHYGLKELKVQNYGGTK-----FPAWLGQSSFENLVVLRFRNCNQCTSL-----PS-VGHL---------PLLKN 175 (405)
Q Consensus 116 ~~~l~~~~~L~~L~l~~~~~~~-----lp~~~~~~~l~~L~~L~l~~~~~~~~l-----~~-l~~l---------~~L~~ 175 (405)
...+..+++|+.|++.++.... +|.++. .+++|+.|++++|. ++.. +. +..+ ++|++
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~ 163 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS--KHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRS 163 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHH--HCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHH--hCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcE
Confidence 3445567778888887766543 344444 57778888887776 3321 11 2222 67777
Q ss_pred EeecCCCCC-eeeCCCCCCCCCCCCCCcccEEeeccCccccc-----cCC---CCCCcccEEEEeccCC-------cccc
Q 044605 176 LVIKGMGRM-AKAGTTGGDQQAAKGFPCLRELSIINCSKLKG-----RLP---QHFSSLERIVIMSCEQ-------LLVS 239 (405)
Q Consensus 176 L~l~~~~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~l~---~~~~~L~~L~l~~c~~-------l~~~ 239 (405)
|++.++.-. ..++.+. .....+++|++|++++|. +.+ ..+ ..+++|+.|++++|.- ++..
T Consensus 164 L~L~~n~l~~~~~~~l~---~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWA---KTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp EECCSSCCTGGGHHHHH---HHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred EECCCCCCCcHHHHHHH---HHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 777665421 1111000 001125667777776652 221 111 1455666666665542 2445
Q ss_pred CCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCccccccc--CCCCCccEEEEeCCccc
Q 044605 240 CTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGL--HKLSHITRISIVGSYLV 317 (405)
Q Consensus 240 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~~--~~l~~L~~L~l~~~~l~ 317 (405)
+..+++|++|++++|.... .. ...+|..+ ..+++|+.|++++|.++
T Consensus 240 l~~~~~L~~L~L~~n~i~~-----~~---------------------------~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSA-----RG---------------------------AAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp GGGCTTCCEEECTTCCCCH-----HH---------------------------HHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred HccCCCcCEEECCCCCCch-----hh---------------------------HHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 5556666666666653221 00 01134444 34777888888887777
Q ss_pred c-----cccCCCCCcccC-CCCCCcCEEeeecCCC
Q 044605 318 S-----FPKGGLESLSFV-RNLTSLERLELSRCPI 346 (405)
Q Consensus 318 ~-----l~~~~~~~l~~l-~~l~~L~~L~l~~c~~ 346 (405)
. +|.. + .++++|++|++++|+.
T Consensus 288 ~~g~~~l~~~-------l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 288 LDAVRTLKTV-------IDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHHH-------HHHHCTTCCEEECTTSBS
T ss_pred HHHHHHHHHH-------HHhcCCCceEEEccCCcC
Confidence 6 5544 2 4467888888887654
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.18 E-value=6.5e-11 Score=119.11 Aligned_cols=161 Identities=14% Similarity=0.179 Sum_probs=70.1
Q ss_pred CCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC--CCCc
Q 044605 147 FENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ--HFSS 224 (405)
Q Consensus 147 l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~--~~~~ 224 (405)
+++|+.|++++|. +..++++..+++|+.|++.++. +..++. ...+++|+.|+++++ .+.+ ++. .+++
T Consensus 42 L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~-l~~~~~-------l~~l~~L~~L~Ls~N-~l~~-l~~l~~l~~ 110 (605)
T 1m9s_A 42 LNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNK-LTDIKP-------LTNLKNLGWLFLDEN-KIKD-LSSLKDLKK 110 (605)
T ss_dssp HTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSC-CCCCGG-------GGGCTTCCEEECCSS-CCCC-CTTSTTCTT
T ss_pred CCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCC-CCCChh-------hccCCCCCEEECcCC-CCCC-ChhhccCCC
Confidence 4445555554444 4444445555555555554432 222221 122455555555543 2221 221 3455
Q ss_pred ccEEEEeccCCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccC
Q 044605 225 LERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLH 301 (405)
Q Consensus 225 L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~ 301 (405)
|+.|++++|.-- ...+..+++|+.|++++|.... + ..+..+++| |++++| .+..++. +.
T Consensus 111 L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-----l--~~l~~l~~L~~L~Ls~N----------~l~~~~~-l~ 172 (605)
T 1m9s_A 111 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD-----I--TVLSRLTKLDTLSLEDN----------QISDIVP-LA 172 (605)
T ss_dssp CCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCC-----C--GGGGSCTTCSEEECCSS----------CCCCCGG-GT
T ss_pred CCEEEecCCCCCCCccccCCCccCEEECCCCccCC-----c--hhhcccCCCCEEECcCC----------cCCCchh-hc
Confidence 555555544311 1234445555555555543321 1 233444444 444444 2223322 44
Q ss_pred CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecC
Q 044605 302 KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRC 344 (405)
Q Consensus 302 ~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c 344 (405)
.+++|+.|++++|.++.++. +..+++|+.|++++|
T Consensus 173 ~l~~L~~L~Ls~N~i~~l~~--------l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDLRA--------LAGLKNLDVLELFSQ 207 (605)
T ss_dssp TCTTCCEEECCSSCCCBCGG--------GTTCTTCSEEECCSE
T ss_pred cCCCCCEEECcCCCCCCChH--------HccCCCCCEEEccCC
Confidence 55555555555555544431 344555555555544
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.16 E-value=9.5e-13 Score=125.66 Aligned_cols=232 Identities=12% Similarity=0.079 Sum_probs=138.3
Q ss_pred hccCCCCCCccEEEEEeeCCCC-----CCcccCCCCCCCccEEEEEcCC--CCC-cCCC--------CCCCCCccEEeec
Q 044605 116 LEMLKPHYGLKELKVQNYGGTK-----FPAWLGQSSFENLVVLRFRNCN--QCT-SLPS--------VGHLPLLKNLVIK 179 (405)
Q Consensus 116 ~~~l~~~~~L~~L~l~~~~~~~-----lp~~~~~~~l~~L~~L~l~~~~--~~~-~l~~--------l~~l~~L~~L~l~ 179 (405)
.+.+..+++|+.|++.++.... ++..+. .+++|+.|++++|. .+. .+|. +..+++|++|+++
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~--~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA--SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTT--TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHH--hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3344456778888887765332 122233 57788888888764 111 2221 3567888888887
Q ss_pred CCCCCe----eeCCCCCCCCCCCCCCcccEEeeccCccccc----cCCC---CC---------CcccEEEEeccCCc---
Q 044605 180 GMGRMA----KAGTTGGDQQAAKGFPCLRELSIINCSKLKG----RLPQ---HF---------SSLERIVIMSCEQL--- 236 (405)
Q Consensus 180 ~~~~l~----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----~l~~---~~---------~~L~~L~l~~c~~l--- 236 (405)
++.-.. .++. ....+++|++|++++|. +.+ .++. .+ ++|++|++++|.--
T Consensus 103 ~n~l~~~~~~~l~~------~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 103 DNAFGPTAQEPLID------FLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp SCCCCTTTHHHHHH------HHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred CCcCCHHHHHHHHH------HHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 764222 1211 11236788888888764 221 1111 12 78888888876521
Q ss_pred -c---ccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEE
Q 044605 237 -L---VSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRIS 310 (405)
Q Consensus 237 -~---~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~ 310 (405)
+ ..+..+++|++|++++|.........+....+..+++| |++++|.... .+...+|..+..+++|+.|+
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~-----~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH-----LGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH-----HHHHHHHHHGGGCTTCCEEE
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc-----HHHHHHHHHHccCCCcCEEE
Confidence 2 34456788888888887543100000122255566666 7777763210 00034677788899999999
Q ss_pred EeCCccccc-----ccCCCCCcccC--CCCCCcCEEeeecCCCCc----ccCCC--CCcCCccEEeecCCc
Q 044605 311 IVGSYLVSF-----PKGGLESLSFV--RNLTSLERLELSRCPILK----SFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 311 l~~~~l~~l-----~~~~~~~l~~l--~~l~~L~~L~l~~c~~l~----~l~~~--~~~~~L~~L~i~~c~ 368 (405)
+++|.++.. +.. + ..+++|++|++++|..-. .+|.. ..+++|++|++++|+
T Consensus 251 L~~n~i~~~~~~~l~~~-------l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDA-------FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CTTCCCCHHHHHHHHHH-------HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCCCCchhhHHHHHHH-------HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 999887753 332 2 347899999999976433 26654 234799999999884
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.11 E-value=9.5e-10 Score=109.61 Aligned_cols=177 Identities=18% Similarity=0.154 Sum_probs=129.7
Q ss_pred CCccEEEEEcCCCCCcCCC-CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCccc
Q 044605 148 ENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLE 226 (405)
Q Consensus 148 ~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~ 226 (405)
.+|+.|++++|. ++.+|. + +++|++|+++++. +..++ ..+++|++|+++++ .+++ +|....+|+
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---------~~l~~L~~L~Ls~N-~l~~-ip~l~~~L~ 123 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPDNL--PPQITVLEITQNA-LISLP---------ELPASLEYLDACDN-RLST-LPELPASLK 123 (571)
T ss_dssp TTCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSC-CSCCC---------CCCTTCCEEECCSS-CCSC-CCCCCTTCC
T ss_pred CCccEEEeCCCC-CCccCHhH--cCCCCEEECcCCC-Ccccc---------cccCCCCEEEccCC-CCCC-cchhhcCCC
Confidence 489999999987 677776 4 4899999999864 44453 24799999999996 6664 666223899
Q ss_pred EEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCC
Q 044605 227 RIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHK 302 (405)
Q Consensus 227 ~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~ 302 (405)
.|+++++. .+|. .+++|+.|++++|... .++. .+++| |++++| .++.+|. +.
T Consensus 124 ~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-----~lp~----~l~~L~~L~Ls~N----------~L~~lp~-l~- 179 (571)
T 3cvr_A 124 HLDVDNNQLTMLPE---LPALLEYINADNNQLT-----MLPE----LPTSLEVLSVRNN----------QLTFLPE-LP- 179 (571)
T ss_dssp EEECCSSCCSCCCC---CCTTCCEEECCSSCCS-----CCCC----CCTTCCEEECCSS----------CCSCCCC-CC-
T ss_pred EEECCCCcCCCCCC---cCccccEEeCCCCccC-----cCCC----cCCCcCEEECCCC----------CCCCcch-hh-
Confidence 99999864 3444 6789999999998654 3443 34566 777777 5567887 55
Q ss_pred CCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCc
Q 044605 303 LSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCP 368 (405)
Q Consensus 303 l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~ 368 (405)
++|+.|++++|+++.+|. |.. .-....+.|+.|++++| .++.+|.. ..+++|+.|++++++
T Consensus 180 -~~L~~L~Ls~N~L~~lp~--~~~-~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 180 -ESLEALDVSTNLLESLPA--VPV-RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp -TTCCEEECCSSCCSSCCC--CC---------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred -CCCCEEECcCCCCCchhh--HHH-hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 999999999999999886 300 00011223399999996 57788875 446799999999986
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.08 E-value=1.3e-09 Score=95.92 Aligned_cols=123 Identities=23% Similarity=0.316 Sum_probs=73.7
Q ss_pred CcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccc
Q 044605 223 SSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLP 297 (405)
Q Consensus 223 ~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp 297 (405)
++|+.|+++++. .+ +..|..+++|+.|++++|... .++...|..+++| |+++++ .++.+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-----~i~~~~~~~l~~L~~L~Ls~N----------~l~~l~ 104 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-----ALPVGVFDSLTQLTVLDLGTN----------QLTVLP 104 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSS----------CCCCCC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-----CcChhhcccCCCcCEEECCCC----------cCCccC
Confidence 445555555432 11 344555666666666665432 4454455555555 555555 334454
Q ss_pred c-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605 298 E-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 298 ~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 368 (405)
. .+..+++|+.|++++|+++.+|.. +.++++|++|++++| .++.++.. ..+++|+.|++.++|
T Consensus 105 ~~~~~~l~~L~~L~Ls~N~l~~lp~~-------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCNKLTELPRG-------IERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTT-------GGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hhHhCcchhhCeEeccCCcccccCcc-------cccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 4 356777777777777777777765 567777777777775 45566543 344677777777754
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.07 E-value=5.3e-10 Score=105.56 Aligned_cols=168 Identities=20% Similarity=0.189 Sum_probs=85.4
Q ss_pred EEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CC-CCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcc
Q 044605 127 ELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VG-HLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCL 203 (405)
Q Consensus 127 ~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 203 (405)
.++..++....+|..+. ..++.|++++|. ++.++. +. .+++|++|++.++ .+..++. .....+++|
T Consensus 22 ~l~c~~~~l~~iP~~~~----~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~-----~~~~~l~~L 90 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP----SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISS-----EAFVPVPNL 90 (361)
T ss_dssp EEECCSSCCSSCCSSCC----TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-CCCEECT-----TTTTTCTTC
T ss_pred EEEeCCCCcCccCccCC----CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCC-cCCccCh-----hhccCCCCC
Confidence 45555555555665432 457777777765 555543 44 6777777777665 3444432 011236677
Q ss_pred cEEeeccCccccccCCCCCCcccEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCC
Q 044605 204 RELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRT 281 (405)
Q Consensus 204 ~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~ 281 (405)
++|+++++ .++...+ ..|..+++|+.|++++|... .++...|..+.+| |+++++
T Consensus 91 ~~L~Ls~N-~l~~~~~------------------~~~~~l~~L~~L~L~~N~i~-----~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 91 RYLDLSSN-HLHTLDE------------------FLFSDLQALEVLLLYNNHIV-----VVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp CEEECCSS-CCCEECT------------------TTTTTCTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCC-cCCcCCH------------------HHhCCCcCCCEEECCCCccc-----EECHHHhCCcccCCEEECCCC
Confidence 77777664 3442211 22333444444444444322 2223333333333 333333
Q ss_pred CCccEEecCCCCccccccc----CCCCCccEEEEeCCcccccccCCCCCcccCCCCCC--cCEEeeecCC
Q 044605 282 EVLPWEIGSPDQESLPEGL----HKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTS--LERLELSRCP 345 (405)
Q Consensus 282 ~~l~l~i~~~~l~~lp~~~----~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~--L~~L~l~~c~ 345 (405)
.++.+|..+ ..+++|+.|++++|+++.+|...+ ..++. |+.|++.+|+
T Consensus 147 ----------~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~------~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 147 ----------QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL------QKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ----------CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHH------HHSCHHHHTTEECCSSC
T ss_pred ----------cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHh------hhccHhhcceEEecCCC
Confidence 223444332 457777777777777777664433 33443 3667776654
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.07 E-value=2e-09 Score=94.20 Aligned_cols=107 Identities=11% Similarity=0.153 Sum_probs=54.5
Q ss_pred CCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccc-cCCCCCccEEEEeCCcc
Q 044605 240 CTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEG-LHKLSHITRISIVGSYL 316 (405)
Q Consensus 240 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~-~~~l~~L~~L~l~~~~l 316 (405)
|..+++|+.|++++|... .+..+.|..+++| |+++++ .++.+|.. +.++++|+.|++++|.+
T Consensus 52 ~~~l~~L~~L~Ls~N~i~-----~~~~~~~~~l~~L~~L~Ls~N----------~l~~l~~~~f~~l~~L~~L~L~~N~l 116 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQIS-----ELAPDAFQGLRSLNSLVLYGN----------KITELPKSLFEGLFSLQLLLLNANKI 116 (220)
T ss_dssp STTCTTCCEEECCSSCCC-----EECTTTTTTCSSCCEEECCSS----------CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred hhCCCCCCEEECCCCcCC-----CcCHHHhhCCcCCCEEECCCC----------cCCccCHhHccCCCCCCEEECCCCCC
Confidence 344444555555444332 2233344444444 444444 33344443 35666666666666666
Q ss_pred cccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605 317 VSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 317 ~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 368 (405)
+.++...| .++++|++|++++|. ++.++.. ..+++|++|+++++|
T Consensus 117 ~~~~~~~~------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 117 NCLRVDAF------QDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCTTTT------TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHc------CCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 66554433 556666666666643 4444432 334566666666654
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.07 E-value=5.5e-10 Score=100.60 Aligned_cols=98 Identities=23% Similarity=0.190 Sum_probs=43.5
Q ss_pred CCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC-CCCcc
Q 044605 147 FENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ-HFSSL 225 (405)
Q Consensus 147 l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~-~~~~L 225 (405)
+++|+.|++++|. ++.++++..+++|++|+++++. +..++. ...+++|++|+++++ .+++ ++. ..++|
T Consensus 40 l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~N~-i~~~~~-------l~~l~~L~~L~L~~N-~l~~-l~~~~~~~L 108 (263)
T 1xeu_A 40 LSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHNQ-ISDLSP-------LKDLTKLEELSVNRN-RLKN-LNGIPSACL 108 (263)
T ss_dssp HTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCSSC-CCCCGG-------GTTCSSCCEEECCSS-CCSC-CTTCCCSSC
T ss_pred cCcCcEEECcCCC-cccchHHhhCCCCCEEECCCCc-cCCChh-------hccCCCCCEEECCCC-ccCC-cCccccCcc
Confidence 4445555554443 4444444445555555554432 222221 112455555555443 2221 221 11445
Q ss_pred cEEEEeccCCc-cccCCCCCCcceEEEcCcC
Q 044605 226 ERIVIMSCEQL-LVSCTTLPLLCELEIDGFG 255 (405)
Q Consensus 226 ~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~ 255 (405)
+.|++++|.-- ...+..+++|+.|++++|.
T Consensus 109 ~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 109 SRLFLDNNELRDTDSLIHLKNLEILSIRNNK 139 (263)
T ss_dssp CEEECCSSCCSBSGGGTTCTTCCEEECTTSC
T ss_pred cEEEccCCccCCChhhcCcccccEEECCCCc
Confidence 55555444210 1345556666666666653
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.06 E-value=1.1e-09 Score=96.56 Aligned_cols=150 Identities=21% Similarity=0.241 Sum_probs=94.8
Q ss_pred ccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcccEEE
Q 044605 150 LVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIV 229 (405)
Q Consensus 150 L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~ 229 (405)
.+.++++++. ++.+|. +-.++|++|++.++. +..+.. .....+++|++|+++++ .+. .++.
T Consensus 21 ~~~v~c~~~~-l~~ip~-~~~~~L~~L~Ls~n~-i~~~~~-----~~~~~l~~L~~L~L~~N-~l~-~i~~--------- 81 (229)
T 3e6j_A 21 GTTVDCRSKR-HASVPA-GIPTNAQILYLHDNQ-ITKLEP-----GVFDSLINLKELYLGSN-QLG-ALPV--------- 81 (229)
T ss_dssp TTEEECTTSC-CSSCCS-CCCTTCSEEECCSSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCC-CCCT---------
T ss_pred CCEeEccCCC-cCccCC-CCCCCCCEEEcCCCc-cCccCH-----HHhhCccCCcEEECCCC-CCC-CcCh---------
Confidence 4456665544 566664 123778888887754 333322 01123677777777764 333 2321
Q ss_pred EeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCcc
Q 044605 230 IMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHIT 307 (405)
Q Consensus 230 l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~ 307 (405)
..|..+++|+.|++++|... .++...|..+.+| |+++++ +++.+|..+..+++|+
T Consensus 82 --------~~~~~l~~L~~L~Ls~N~l~-----~l~~~~~~~l~~L~~L~Ls~N----------~l~~lp~~~~~l~~L~ 138 (229)
T 3e6j_A 82 --------GVFDSLTQLTVLDLGTNQLT-----VLPSAVFDRLVHLKELFMCCN----------KLTELPRGIERLTHLT 138 (229)
T ss_dssp --------TTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSS----------CCCSCCTTGGGCTTCS
T ss_pred --------hhcccCCCcCEEECCCCcCC-----ccChhHhCcchhhCeEeccCC----------cccccCcccccCCCCC
Confidence 23445556666666665433 3444455555555 555555 4467788888999999
Q ss_pred EEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCC
Q 044605 308 RISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPIL 347 (405)
Q Consensus 308 ~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l 347 (405)
.|++++|+++.++...| ..+++|+.|++.+|+..
T Consensus 139 ~L~L~~N~l~~~~~~~~------~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 139 HLALDQNQLKSIPHGAF------DRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp EEECCSSCCCCCCTTTT------TTCTTCCEEECTTSCBC
T ss_pred EEECCCCcCCccCHHHH------hCCCCCCEEEeeCCCcc
Confidence 99999999999987654 78899999999998754
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.06 E-value=1.6e-09 Score=94.77 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=27.1
Q ss_pred cccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605 298 EGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP 345 (405)
Q Consensus 298 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~ 345 (405)
..+..+++|+.|++++|+++.++... +..+++|++|++++|+
T Consensus 123 ~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 123 DSFIGLSSVRLLSLYDNQITTVAPGA------FDTLHSLSTLNLLANP 164 (220)
T ss_dssp TSSTTCTTCSEEECTTSCCCCBCTTT------TTTCTTCCEEECCSCC
T ss_pred hHcCCCccCCEEECCCCcCCEECHHH------hcCCCCCCEEEecCcC
Confidence 34556677777777777777664433 3566677777777665
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.02 E-value=3.1e-09 Score=92.95 Aligned_cols=107 Identities=16% Similarity=0.238 Sum_probs=78.2
Q ss_pred CCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcc
Q 044605 240 CTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYL 316 (405)
Q Consensus 240 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l 316 (405)
|..+++|++|++++|... .++.+.|..+++| |+++++ .++.++. .+..+++|++|++++|++
T Consensus 53 ~~~l~~L~~L~L~~N~i~-----~i~~~~~~~l~~L~~L~Ls~N----------~l~~~~~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKIT-----DIEEGAFEGASGVNEILLTSN----------RLENVQHKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp GGGCTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSS----------CCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred hccCCCCCEEECCCCcCC-----EECHHHhCCCCCCCEEECCCC----------ccCccCHhHhcCCcCCCEEECCCCcC
Confidence 455667777777666543 4455566666666 666665 3345544 588999999999999999
Q ss_pred cccccCCCCCcccCCCCCCcCEEeeecCCCCccc-CCC-CCcCCccEEeecCCc
Q 044605 317 VSFPKGGLESLSFVRNLTSLERLELSRCPILKSF-PEN-GLLPSVVYLSIYLCP 368 (405)
Q Consensus 317 ~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l-~~~-~~~~~L~~L~i~~c~ 368 (405)
+.++...| .++++|++|++++|. ++.+ |.. ..+++|++|+++++|
T Consensus 118 ~~~~~~~~------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 118 TCVGNDSF------IGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCBCTTSS------TTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CeECHhHc------CCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence 99866554 788999999999975 5555 444 556799999999876
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.01 E-value=1.4e-09 Score=94.20 Aligned_cols=143 Identities=22% Similarity=0.248 Sum_probs=70.9
Q ss_pred EEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC---CCCcccEE
Q 044605 152 VLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERI 228 (405)
Q Consensus 152 ~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L 228 (405)
.+++.++. ++.+|. +..++|++|++.++. +..++. .....+++|++|+++++ .+++..+. .+++|++|
T Consensus 11 ~v~c~~~~-l~~~p~-~~~~~l~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 81 (208)
T 2o6s_A 11 TVECYSQG-RTSVPT-GIPAQTTYLDLETNS-LKSLPN-----GVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYL 81 (208)
T ss_dssp EEECCSSC-CSSCCS-CCCTTCSEEECCSSC-CCCCCT-----TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred EEEecCCC-ccCCCC-CCCCCCcEEEcCCCc-cCcCCh-----hhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEE
Confidence 34444433 444442 234577778777653 333432 01123677777777764 44422111 34455555
Q ss_pred EEeccC--Ccc-ccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCccccc-ccCCCC
Q 044605 229 VIMSCE--QLL-VSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPE-GLHKLS 304 (405)
Q Consensus 229 ~l~~c~--~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~-~~~~l~ 304 (405)
+++++. .++ ..+..+++|++|++++|. ++.+|. .+..++
T Consensus 82 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-------------------------------------l~~~~~~~~~~l~ 124 (208)
T 2o6s_A 82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQ-------------------------------------LQSLPDGVFDKLT 124 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------------------------------------CCCCCTTTTTTCT
T ss_pred ECCCCcCCccCHhHhcCccCCCEEEcCCCc-------------------------------------CcccCHhHhccCC
Confidence 554432 111 123444455555554442 223332 245666
Q ss_pred CccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605 305 HITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI 346 (405)
Q Consensus 305 ~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~ 346 (405)
+|+.|++++|.++.++...| ..+++|++|++++|+.
T Consensus 125 ~L~~L~l~~N~l~~~~~~~~------~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 125 QLKDLRLYQNQLKSVPDGVF------DRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TCCEEECCSSCCSCCCTTTT------TTCTTCCEEECCSCCB
T ss_pred cCCEEECCCCccceeCHHHh------ccCCCccEEEecCCCe
Confidence 66666666666666555432 4556666666666543
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.01 E-value=6.3e-09 Score=90.99 Aligned_cols=44 Identities=18% Similarity=0.437 Sum_probs=35.3
Q ss_pred ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605 297 PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI 346 (405)
Q Consensus 297 p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~ 346 (405)
|..+..+++|+.|++++|.++.++...| ..+++|++|++++|+.
T Consensus 121 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTF------SPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTT------TTCTTCCEEECCSSCE
T ss_pred HHHcCCCCCCCEEECCCCcCCEECHHHH------hCCCCCCEEEeCCCCc
Confidence 3467788899999999999988887654 6788899999988763
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.00 E-value=1.9e-11 Score=115.60 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=26.8
Q ss_pred ccCCCCCccEEEEeCCcccccccCCCCCccc-CCCCCCcCEEeeecCC
Q 044605 299 GLHKLSHITRISIVGSYLVSFPKGGLESLSF-VRNLTSLERLELSRCP 345 (405)
Q Consensus 299 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~ 345 (405)
.+..+++|+.|++++|.+..++..++..++. +.++++|++|++++|+
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3456677777777776644443322211111 4566777777777765
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.99 E-value=8.9e-09 Score=89.07 Aligned_cols=107 Identities=27% Similarity=0.392 Sum_probs=75.9
Q ss_pred CCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcc
Q 044605 240 CTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYL 316 (405)
Q Consensus 240 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l 316 (405)
+..+++|++|++++|... .++...|..+++| ++++++ .++.+|. .+..+++|+.|++++|++
T Consensus 48 ~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l 112 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQ-----SLPNGVFNKLTSLTYLNLSTN----------QLQSLPNGVFDKLTQLKELALNTNQL 112 (208)
T ss_dssp TTTCTTCSEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSS----------CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred hcccccCcEEECCCCccC-----ccChhhcCCCCCcCEEECCCC----------cCCccCHhHhcCccCCCEEEcCCCcC
Confidence 455666666666665433 3444455556666 666555 3345554 467999999999999999
Q ss_pred cccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605 317 VSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 317 ~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 368 (405)
+.++...| .++++|++|++++|. ++.++.. ..+++|++|++++++
T Consensus 113 ~~~~~~~~------~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 113 QSLPDGVF------DKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCCTTTT------TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cccCHhHh------ccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 99887644 788999999999974 5666654 456799999999853
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.96 E-value=6.3e-12 Score=118.92 Aligned_cols=224 Identities=9% Similarity=0.040 Sum_probs=135.7
Q ss_pred CCCCCCccEEEEEeeCCCCCC-----cccCCCCCC-CccEEEEEcCCCCCcCC--CCCCC-----CCccEEeecCCCCCe
Q 044605 119 LKPHYGLKELKVQNYGGTKFP-----AWLGQSSFE-NLVVLRFRNCNQCTSLP--SVGHL-----PLLKNLVIKGMGRMA 185 (405)
Q Consensus 119 l~~~~~L~~L~l~~~~~~~lp-----~~~~~~~l~-~L~~L~l~~~~~~~~l~--~l~~l-----~~L~~L~l~~~~~l~ 185 (405)
+...++|+.|++.+|.....+ ..+. .++ +|++|++++|. ++... .+..+ ++|++|+++++. +.
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~ 93 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFA--NTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LS 93 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHH--TCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GG
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHH--hCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CC
Confidence 334566899999887765544 2333 466 89999998886 55432 13332 889999998875 33
Q ss_pred eeCC--CCCCCCCCCCC-CcccEEeeccCccccccCCC-------C-CCcccEEEEeccCCc-------cccCCCCC-Cc
Q 044605 186 KAGT--TGGDQQAAKGF-PCLRELSIINCSKLKGRLPQ-------H-FSSLERIVIMSCEQL-------LVSCTTLP-LL 246 (405)
Q Consensus 186 ~~~~--~~~~~~~~~~~-~~L~~L~l~~~~~l~~~l~~-------~-~~~L~~L~l~~c~~l-------~~~l~~l~-~L 246 (405)
..+. ++. ....+ ++|++|+++++. +++..+. . ..+|++|++++|.-- +..+..++ +|
T Consensus 94 ~~~~~~l~~---~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 94 YKSSDELVK---TLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp GSCHHHHHH---HHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred hHHHHHHHH---HHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence 2211 110 01113 789999998864 4432221 1 358999999886421 33344455 89
Q ss_pred ceEEEcCcCCccccccccccC----CCCCC-CCC--eeecCCCCccEEecCCCCcc-----cccccCC-CCCccEEEEeC
Q 044605 247 CELEIDGFGEVAWINRPVEAG----IFDSS-NPG--PEKSRTEVLPWEIGSPDQES-----LPEGLHK-LSHITRISIVG 313 (405)
Q Consensus 247 ~~L~l~~~~~l~~~~~~~~~~----~~~~l-~~L--l~l~~~~~l~l~i~~~~l~~-----lp~~~~~-l~~L~~L~l~~ 313 (405)
++|++++|.... .... .+... ++| +++++|. ++. ++..+.. .++|+.|++++
T Consensus 170 ~~L~Ls~n~l~~-----~~~~~l~~~l~~~~~~L~~L~Ls~N~----------i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 170 NSLNLRGNNLAS-----KNCAELAKFLASIPASVTSLDLSANL----------LGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp CEEECTTSCGGG-----SCHHHHHHHHHTSCTTCCEEECTTSC----------GGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred cEeeecCCCCch-----hhHHHHHHHHHhCCCCCCEEECCCCC----------CChhHHHHHHHHHhcCCCCceEEECcC
Confidence 999999885442 1111 22233 356 7777763 333 5555555 45999999999
Q ss_pred CcccccccCCCCCccc-CCCCCCcCEEeeecCCC-------CcccCCC-CCcCCccEEeecCCc
Q 044605 314 SYLVSFPKGGLESLSF-VRNLTSLERLELSRCPI-------LKSFPEN-GLLPSVVYLSIYLCP 368 (405)
Q Consensus 314 ~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~~-------l~~l~~~-~~~~~L~~L~i~~c~ 368 (405)
|.+++.+...+ .. +..+++|++|++++|.. +..++.. ...++|++|++++++
T Consensus 235 N~l~~~~~~~l---~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 235 NCLHGPSLENL---KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp SCCCCCCHHHH---HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCCCcHHHHHH---HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 88877543111 11 36778999999999751 1222222 344678999999874
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.95 E-value=3.2e-09 Score=88.54 Aligned_cols=54 Identities=26% Similarity=0.441 Sum_probs=24.1
Q ss_pred CCcccEEeeccCcccc-ccCCC---CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcC
Q 044605 200 FPCLRELSIINCSKLK-GRLPQ---HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFG 255 (405)
Q Consensus 200 ~~~L~~L~l~~~~~l~-~~l~~---~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~ 255 (405)
+++|++|++++|. +. +.+|. .+++|+.|++++|. .+ ..+..+++|++|++++|.
T Consensus 23 ~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR 82 (168)
T ss_dssp TTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC
T ss_pred cccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc
Confidence 3455555555542 22 12332 34445555555443 11 344445555555555553
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.93 E-value=5.9e-09 Score=98.36 Aligned_cols=171 Identities=15% Similarity=0.154 Sum_probs=111.8
Q ss_pred cEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCC--CCCCCCCCCCCCcccEEeeccCccccccCCCCCCcccEE
Q 044605 151 VVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGT--TGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERI 228 (405)
Q Consensus 151 ~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L 228 (405)
+.++++++. ++.+|. .-.+.++.|+++++ .+..++. +. ..+++|++|+++++ .+++ ++
T Consensus 21 ~~l~c~~~~-l~~iP~-~~~~~l~~L~Ls~N-~l~~l~~~~~~------~~l~~L~~L~L~~N-~i~~-i~--------- 80 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQ-SLPSYTALLDLSHN-NLSRLRAEWTP------TRLTNLHSLLLSHN-HLNF-IS--------- 80 (361)
T ss_dssp TEEECCSSC-CSSCCS-SCCTTCSEEECCSS-CCCEECTTSSS------SCCTTCCEEECCSS-CCCE-EC---------
T ss_pred CEEEeCCCC-cCccCc-cCCCCCCEEECCCC-CCCccChhhhh------hcccccCEEECCCC-cCCc-cC---------
Confidence 455665544 555553 11245677777765 3444433 11 03566666666553 2321 11
Q ss_pred EEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccc-ccccCCCCC
Q 044605 229 VIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSH 305 (405)
Q Consensus 229 ~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~ 305 (405)
+..|..+++|++|++++|... .++...|..+.+| |+++++ .++.+ |..+..+++
T Consensus 81 --------~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~N----------~i~~~~~~~~~~l~~ 137 (361)
T 2xot_A 81 --------SEAFVPVPNLRYLDLSSNHLH-----TLDEFLFSDLQALEVLLLYNN----------HIVVVDRNAFEDMAQ 137 (361)
T ss_dssp --------TTTTTTCTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSS----------CCCEECTTTTTTCTT
T ss_pred --------hhhccCCCCCCEEECCCCcCC-----cCCHHHhCCCcCCCEEECCCC----------cccEECHHHhCCccc
Confidence 245777889999999998654 5677788889999 899888 44555 567889999
Q ss_pred ccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCC--ccEEeecCCc
Q 044605 306 ITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPS--VVYLSIYLCP 368 (405)
Q Consensus 306 L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~--L~~L~i~~c~ 368 (405)
|+.|++++|+++.+|...|.. +..+++|+.|++++| .++.+|.. ..++. ++.|++.++|
T Consensus 138 L~~L~L~~N~l~~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 138 LQKLYLSQNQISRFPVELIKD---GNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCEEECCSSCCCSCCGGGTC-------CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCEEECCCCcCCeeCHHHhcC---cccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 999999999999998763311 146899999999996 56777643 22233 5789999865
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.92 E-value=5.4e-09 Score=94.05 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=117.4
Q ss_pred CCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC--CCCCc
Q 044605 147 FENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP--QHFSS 224 (405)
Q Consensus 147 l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~--~~~~~ 224 (405)
+.++..++++++. +++++.+..+++|++|++.++ .+..++. ...+++|++|+++++ .+++ ++ ..+++
T Consensus 18 l~~l~~l~l~~~~-i~~~~~~~~l~~L~~L~l~~n-~i~~l~~-------l~~l~~L~~L~L~~N-~i~~-~~~l~~l~~ 86 (263)
T 1xeu_A 18 LANAVKQNLGKQS-VTDLVSQKELSGVQNFNGDNS-NIQSLAG-------MQFFTNLKELHLSHN-QISD-LSPLKDLTK 86 (263)
T ss_dssp HHHHHHHHHTCSC-TTSEECHHHHTTCSEEECTTS-CCCCCTT-------GGGCTTCCEEECCSS-CCCC-CGGGTTCSS
T ss_pred HHHHHHHHhcCCC-cccccchhhcCcCcEEECcCC-CcccchH-------HhhCCCCCEEECCCC-ccCC-ChhhccCCC
Confidence 4556666676655 667777778999999999987 4555544 334899999999986 4553 33 36889
Q ss_pred ccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccccccc
Q 044605 225 LERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGL 300 (405)
Q Consensus 225 L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~ 300 (405)
|+.|+++++. .++ .+.. ++|+.|++++|.... + ..+..+++| ++++++ +++.++ .+
T Consensus 87 L~~L~L~~N~l~~l~-~~~~-~~L~~L~L~~N~l~~-----~--~~l~~l~~L~~L~Ls~N----------~i~~~~-~l 146 (263)
T 1xeu_A 87 LEELSVNRNRLKNLN-GIPS-ACLSRLFLDNNELRD-----T--DSLIHLKNLEILSIRNN----------KLKSIV-ML 146 (263)
T ss_dssp CCEEECCSSCCSCCT-TCCC-SSCCEEECCSSCCSB-----S--GGGTTCTTCCEEECTTS----------CCCBCG-GG
T ss_pred CCEEECCCCccCCcC-cccc-CcccEEEccCCccCC-----C--hhhcCcccccEEECCCC----------cCCCCh-HH
Confidence 9999999875 333 2333 899999999986542 2 246777777 888777 445665 57
Q ss_pred CCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605 301 HKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP 345 (405)
Q Consensus 301 ~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~ 345 (405)
..+++|+.|++++|.++.+ .. +..+++|+.|++++|+
T Consensus 147 ~~l~~L~~L~L~~N~i~~~-~~-------l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 147 GFLSKLEVLDLHGNEITNT-GG-------LTRLKKVNWIDLTGQK 183 (263)
T ss_dssp GGCTTCCEEECTTSCCCBC-TT-------STTCCCCCEEEEEEEE
T ss_pred ccCCCCCEEECCCCcCcch-HH-------hccCCCCCEEeCCCCc
Confidence 7889999999999888887 22 5788899999999875
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.90 E-value=1.5e-09 Score=90.64 Aligned_cols=124 Identities=20% Similarity=0.271 Sum_probs=97.1
Q ss_pred CCCcccEEEEeccC----CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCc
Q 044605 221 HFSSLERIVIMSCE----QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQE 294 (405)
Q Consensus 221 ~~~~L~~L~l~~c~----~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~ 294 (405)
..++|+.|++++|. .++..+..+++|++|++++|.... + ..+..+++| +++++| .++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-----~--~~~~~l~~L~~L~Ls~N----------~l~ 84 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----V--SNLPKLPKLKKLELSEN----------RIF 84 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-----C--SSCCCCSSCCEEEEESC----------CCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-----h--hhhccCCCCCEEECcCC----------cCc
Confidence 46889999999875 456666779999999999997543 3 577788888 888888 334
Q ss_pred c-cccccCCCCCccEEEEeCCccccccc-CCCCCcccCCCCCCcCEEeeecCCCCcccCC----C-CCcCCccEEeecCC
Q 044605 295 S-LPEGLHKLSHITRISIVGSYLVSFPK-GGLESLSFVRNLTSLERLELSRCPILKSFPE----N-GLLPSVVYLSIYLC 367 (405)
Q Consensus 295 ~-lp~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~----~-~~~~~L~~L~i~~c 367 (405)
. +|..+..+++|+.|++++|.++.++. .. +..+++|++|++++|+ ++.++. . ..+++|++|++++|
T Consensus 85 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 85 GGLDMLAEKLPNLTHLNLSGNKLKDISTLEP------LKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp SCCCHHHHHCTTCCEEECBSSSCCSSGGGGG------GSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred hHHHHHHhhCCCCCEEeccCCccCcchhHHH------HhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 4 66666679999999999999988763 22 5788999999999975 566665 2 55679999999998
Q ss_pred c
Q 044605 368 P 368 (405)
Q Consensus 368 ~ 368 (405)
.
T Consensus 158 ~ 158 (168)
T 2ell_A 158 E 158 (168)
T ss_dssp T
T ss_pred C
Confidence 5
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.88 E-value=1.1e-11 Score=123.79 Aligned_cols=180 Identities=12% Similarity=0.049 Sum_probs=107.8
Q ss_pred eeeEEEEEccCCCCccCccccCCCccCcccCceeeCC------------CCCCCcccccccccCCCceEEcccccCCChh
Q 044605 25 FVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGK------------SNCSGLSELRSSTLLHEKLTILGLENVNVAE 92 (405)
Q Consensus 25 ~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~------------~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~ 92 (405)
.++|+.|+|++|.++.+|.+|+++++|+.|+...... ........++.+.+|+ .|......
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~-~L~~l~~n------ 420 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK-AVDPMRAA------ 420 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHH-HHCGGGHH------
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcc-cCcchhhc------
Confidence 4677899999999999999999999999997421100 0011112223333332 22210000
Q ss_pred hhhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCC
Q 044605 93 DAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLP 171 (405)
Q Consensus 93 ~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~ 171 (405)
.+..+.. .......+..+. ...|+.|++.+|....+|. +. .+++|+.|++++|. ++.+|. ++.++
T Consensus 421 -----~~~~L~~----l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~lp~-~~--~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 486 (567)
T 1dce_A 421 -----YLDDLRS----KFLLENSVLKME-YADVRVLHLAHKDLTVLCH-LE--QLLLVTHLDLSHNR-LRALPPALAALR 486 (567)
T ss_dssp -----HHHHHHH----HHHHHHHHHHHH-HTTCSEEECTTSCCSSCCC-GG--GGTTCCEEECCSSC-CCCCCGGGGGCT
T ss_pred -----ccchhhh----hhhhcccccccC-ccCceEEEecCCCCCCCcC-cc--ccccCcEeecCccc-ccccchhhhcCC
Confidence 0000000 000001111111 1248889998888777886 55 78899999998887 667764 88889
Q ss_pred CccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccC-CC---CCCcccEEEEeccC
Q 044605 172 LLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRL-PQ---HFSSLERIVIMSCE 234 (405)
Q Consensus 172 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l-~~---~~~~L~~L~l~~c~ 234 (405)
+|+.|+++++. +..++.+ ..+++|++|+++++ .+++.. |. .+++|+.|+++++.
T Consensus 487 ~L~~L~Ls~N~-l~~lp~l-------~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 487 CLEVLQASDNA-LENVDGV-------ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp TCCEEECCSSC-CCCCGGG-------TTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCEEECCCCC-CCCCccc-------CCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 99999998764 4445442 34888888888875 555332 43 46667777776653
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.86 E-value=4.7e-12 Score=126.58 Aligned_cols=65 Identities=25% Similarity=0.279 Sum_probs=34.1
Q ss_pred cccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCccc--CCC-CCcCCccEEeecCC
Q 044605 294 ESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSF--PEN-GLLPSVVYLSIYLC 367 (405)
Q Consensus 294 ~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l--~~~-~~~~~L~~L~i~~c 367 (405)
+.+|..+.++++|+.|++++|.++.+| . +.++++|++|++++|. ++.+ |.. ..+++|+.|+++++
T Consensus 476 ~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~-------l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 476 RALPPALAALRCLEVLQASDNALENVD-G-------VANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCCG-G-------GTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTS
T ss_pred cccchhhhcCCCCCEEECCCCCCCCCc-c-------cCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCC
Confidence 445555555556666666555555554 2 3555556666665543 3333 333 33445566666555
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.81 E-value=2.9e-08 Score=84.88 Aligned_cols=102 Identities=13% Similarity=0.214 Sum_probs=50.5
Q ss_pred CcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccccc
Q 044605 223 SSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPE 298 (405)
Q Consensus 223 ~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~ 298 (405)
++|+.|+++++. .+|..|..+++|+.|++++|... .++.+.|..+++| |+++++ .++.++.
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~-----~i~~~~f~~l~~L~~L~Ls~N----------~l~~i~~ 95 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-----TLSNQSFSNMTQLLTLILSYN----------RLRCIPP 95 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSS----------CCCBCCT
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCC-----EeCHhHccCCCCCCEEECCCC----------ccCEeCH
Confidence 445555555432 33455566677777777766433 2333334444444 444433 2233322
Q ss_pred -ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605 299 -GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP 345 (405)
Q Consensus 299 -~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~ 345 (405)
.+..+++|+.|++++|.++.+|...| ..+++|+.|++++|+
T Consensus 96 ~~f~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 96 RTFDGLKSLRLLSLHGNDISVVPEGAF------NDLSALSHLAIGANP 137 (193)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTT------TTCTTCCEEECCSSC
T ss_pred HHhCCCCCCCEEECCCCCCCeeChhhh------hcCccccEEEeCCCC
Confidence 34455555555555555555554332 444555555555543
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=5.1e-08 Score=90.64 Aligned_cols=97 Identities=9% Similarity=0.135 Sum_probs=66.9
Q ss_pred CCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccccc-ccCCCCCcc-EEEEeCCcccc
Q 044605 243 LPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHIT-RISIVGSYLVS 318 (405)
Q Consensus 243 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~-~L~l~~~~l~~ 318 (405)
+++|+.+++.+|... .++...|..+.+| +.+.+. + +.++. ++.++++|+ .+.+.+ .++.
T Consensus 225 ~~~L~~l~L~~n~i~-----~I~~~aF~~~~~L~~l~l~~n--i---------~~I~~~aF~~~~~L~~~l~l~~-~l~~ 287 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-----TIPDFTFAQKKYLLKIKLPHN--L---------KTIGQRVFSNCGRLAGTLELPA-SVTA 287 (329)
T ss_dssp CTTCCEEECTTBCCC-----EECTTTTTTCTTCCEEECCTT--C---------CEECTTTTTTCTTCCEEEEECT-TCCE
T ss_pred cCCCeEEECCCCCcc-----eecHhhhhCCCCCCEEECCcc--c---------ceehHHHhhCChhccEEEEEcc-cceE
Confidence 678888888876533 6677778777777 666553 2 45544 567888888 888877 7777
Q ss_pred cccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEe
Q 044605 319 FPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLS 363 (405)
Q Consensus 319 l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~ 363 (405)
|+...| .+|++|+++++.+ +.++.++.. ..+++|+.++
T Consensus 288 I~~~aF------~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 288 IEFGAF------MGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECTTTT------TTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred Echhhh------hCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 777665 7788888888766 356777654 3445666654
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.78 E-value=3.7e-08 Score=84.07 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=30.6
Q ss_pred cEEeeccCccccccCCC-CCCcccEEEEeccC--Cccc--cCCCCCCcceEEEcCcCCc
Q 044605 204 RELSIINCSKLKGRLPQ-HFSSLERIVIMSCE--QLLV--SCTTLPLLCELEIDGFGEV 257 (405)
Q Consensus 204 ~~L~l~~~~~l~~~l~~-~~~~L~~L~l~~c~--~l~~--~l~~l~~L~~L~l~~~~~l 257 (405)
+.+++++. .++ .+|. ..++|+.|+++++. .++. .|..+++|++|++++|...
T Consensus 11 ~~l~~s~~-~l~-~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~ 67 (192)
T 1w8a_A 11 TTVDCTGR-GLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67 (192)
T ss_dssp TEEECTTS-CCS-SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC
T ss_pred CEEEcCCC-CcC-cCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC
Confidence 56666663 444 4554 33467777777653 2222 2566777777777776443
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.78 E-value=2.8e-09 Score=87.07 Aligned_cols=63 Identities=24% Similarity=0.461 Sum_probs=42.3
Q ss_pred cccccCCCCCccEEEEeCCcccccc--cCCCCCcccCCCCCCcCEEeeecCCCCcccCC----C-CCcCCccEEeecC
Q 044605 296 LPEGLHKLSHITRISIVGSYLVSFP--KGGLESLSFVRNLTSLERLELSRCPILKSFPE----N-GLLPSVVYLSIYL 366 (405)
Q Consensus 296 lp~~~~~l~~L~~L~l~~~~l~~l~--~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~----~-~~~~~L~~L~i~~ 366 (405)
+|..+..+++|+.|++++|.++.++ .. +.++++|++|++++|+ ++.++. . ..+++|++|++++
T Consensus 80 ~~~~~~~l~~L~~L~ls~N~i~~~~~~~~-------~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNLSGNKIKDLSTIEP-------LKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp THHHHHHCTTCCEEECTTSCCCSHHHHGG-------GGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHHhhhCCCCCEEECCCCcCCChHHHHH-------HhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 5555566788888888888777764 22 5677888888888864 555554 1 3345777777653
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.73 E-value=7.2e-09 Score=84.53 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=32.4
Q ss_pred cccCCCCCccEEEEeCCccccccc---CCCCCcccCCCCCCcCEEeeec
Q 044605 298 EGLHKLSHITRISIVGSYLVSFPK---GGLESLSFVRNLTSLERLELSR 343 (405)
Q Consensus 298 ~~~~~l~~L~~L~l~~~~l~~l~~---~~~~~l~~l~~l~~L~~L~l~~ 343 (405)
..+..+++|+.|++++|.++.++. .. +..+++|+.|++++
T Consensus 107 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~------~~~l~~L~~L~l~d 149 (149)
T 2je0_A 107 EPLKKLENLKSLDLFNCEVTNLNDYRENV------FKLLPQLTYLDGYD 149 (149)
T ss_dssp GGGGGCTTCCEEECTTCGGGGSTTHHHHH------HHHCTTCCEETTBC
T ss_pred HHHhhCCCCCEEeCcCCcccchHHHHHHH------HHHCCCcccccCCC
Confidence 567899999999999999998875 22 46788999998763
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.69 E-value=1.7e-08 Score=84.94 Aligned_cols=68 Identities=22% Similarity=0.235 Sum_probs=48.2
Q ss_pred ccccc-cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCC-----CCCcCCccEEeecCCc
Q 044605 295 SLPEG-LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPE-----NGLLPSVVYLSIYLCP 368 (405)
Q Consensus 295 ~lp~~-~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~-----~~~~~~L~~L~i~~c~ 368 (405)
.+|.. +..+++|+.|++++|.++.+|.-.. +.++++|++|++++|+ ++.+|. ...+++|++|+++++.
T Consensus 78 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-----l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 78 RIGEGLDQALPDLTELILTNNSLVELGDLDP-----LASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECSCHHHHCTTCCEEECCSCCCCCGGGGGG-----GGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ccCcchhhcCCCCCEEECCCCcCCcchhhHh-----hhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 34433 3678888999998888888775101 5678889999998875 456664 2345688999988875
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.69 E-value=1.8e-07 Score=78.50 Aligned_cols=62 Identities=31% Similarity=0.427 Sum_probs=37.3
Q ss_pred cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605 300 LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 300 ~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 368 (405)
+..+++|+.|++++|.++.++...| .++++|++|++++| .++.++.. ..+++|++|++++++
T Consensus 72 ~~~l~~L~~L~l~~N~l~~~~~~~~------~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQSLPNGVF------DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTT------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCccCEEECCCCCccccCHHHh------hCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 4566667777776666666655432 55666777777665 34555543 334566777776654
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.67 E-value=1.2e-07 Score=80.90 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=83.3
Q ss_pred CCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccc-cccCCCCCccEEEEeCCcccccc
Q 044605 244 PLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLP-EGLHKLSHITRISIVGSYLVSFP 320 (405)
Q Consensus 244 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~l~ 320 (405)
++|++|++++|... .++ ..|..+++| |+++++ .++.++ ..+.++++|+.|++++|+++.++
T Consensus 31 ~~l~~L~L~~n~i~-----~ip-~~~~~l~~L~~L~Ls~N----------~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~ 94 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-----LVP-KELSNYKHLTLIDLSNN----------RISTLSNQSFSNMTQLLTLILSYNRLRCIP 94 (193)
T ss_dssp TTCCEEECCSSCCC-----SCC-GGGGGCTTCCEEECCSS----------CCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCCEEECCCCcCc-----hhH-HHhhcccCCCEEECCCC----------cCCEeCHhHccCCCCCCEEECCCCccCEeC
Confidence 68999999998654 455 577888888 888887 456665 46889999999999999999998
Q ss_pred cCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605 321 KGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 321 ~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 368 (405)
...| .++++|++|++++| .++.++.. ..+++|+.|++.+.|
T Consensus 95 ~~~f------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 95 PRTF------DGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTT------TTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred HHHh------CCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 7654 78899999999996 56777764 456799999999875
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.67 E-value=1.1e-07 Score=81.04 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=58.2
Q ss_pred CCcccEEeeccCccccccCCC----CCCcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCC
Q 044605 200 FPCLRELSIINCSKLKGRLPQ----HFSSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSS 272 (405)
Q Consensus 200 ~~~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l 272 (405)
++++++|+++++ .+.+..+. .+++|+.|+++++. .+ +..|..+++|++|++++|.... ++
T Consensus 28 ~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~------- 94 (192)
T 1w8a_A 28 PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-----IS------- 94 (192)
T ss_dssp CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE-----EC-------
T ss_pred CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCc-----cC-------
Confidence 347777777764 44422221 46677777777653 22 4556667777777777663321 11
Q ss_pred CCCeeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605 273 NPGPEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI 346 (405)
Q Consensus 273 ~~Ll~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~ 346 (405)
|..+.++++|+.|++++|+++.++... +..+++|++|++++|+.
T Consensus 95 ------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 95 ------------------------NKMFLGLHQLKTLNLYDNQISCVMPGS------FEHLNSLTSLNLASNPF 138 (192)
T ss_dssp ------------------------SSSSTTCTTCCEEECCSSCCCEECTTS------STTCTTCCEEECTTCCB
T ss_pred ------------------------HHHhcCCCCCCEEECCCCcCCeeCHHH------hhcCCCCCEEEeCCCCc
Confidence 123445666666666666666554333 25556666666666543
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.66 E-value=1.5e-08 Score=85.20 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=85.2
Q ss_pred CCcccEEeeccCccccccCCC---CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCC
Q 044605 200 FPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNP 274 (405)
Q Consensus 200 ~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~ 274 (405)
+++|++|+++++ .++ .++. ..++|+.|+++++. .+ ..+..+++|++|++++|... .++.+.+..+++
T Consensus 18 ~~~L~~L~l~~n-~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~ 89 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-----RIGEGLDQALPD 89 (176)
T ss_dssp TTSCEEEECTTS-CCC-SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-----EECSCHHHHCTT
T ss_pred cCCceEEEeeCC-CCc-hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-----ccCcchhhcCCC
Confidence 678899999886 455 2443 34488888888764 23 56777888888888887654 445444466666
Q ss_pred C--eeecCCCCccEEecCCCCccccc--ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605 275 G--PEKSRTEVLPWEIGSPDQESLPE--GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP 345 (405)
Q Consensus 275 L--l~l~~~~~l~l~i~~~~l~~lp~--~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~ 345 (405)
| ++++++ .++.+|. .+..+++|+.|++++|.+..+|.... .-+..+++|+.|++++|.
T Consensus 90 L~~L~L~~N----------~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~---~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNN----------SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL---YVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSC----------CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHH---HHHHHCTTCSEETTEECC
T ss_pred CCEEECCCC----------cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHH---HHHHHCCccceeCCCcCC
Confidence 6 777766 4456665 67788888888888888877664200 003567888888888765
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.65 E-value=1.7e-07 Score=78.63 Aligned_cols=105 Identities=25% Similarity=0.276 Sum_probs=68.2
Q ss_pred CcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccc
Q 044605 223 SSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLP 297 (405)
Q Consensus 223 ~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp 297 (405)
++|+.|+++++. .+ +..+..+++|++|++++|... .++...+..+++| ++++++ .++.+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~N----------~l~~~~ 92 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-----SLPDGVFDKLTKLTILYLHEN----------KLQSLP 92 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSS----------CCCCCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-----EeChhHccCCCccCEEECCCC----------CccccC
Confidence 344444444432 11 123455666666666666433 4444455566666 666655 345555
Q ss_pred c-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCc
Q 044605 298 E-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILK 348 (405)
Q Consensus 298 ~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~ 348 (405)
. .+..+++|+.|++++|.++.+|...| ..+++|++|++++|+...
T Consensus 93 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~------~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 93 NGVFDKLTQLKELALDTNQLKSVPDGIF------DRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTT------TTCTTCCEEECCSSCBCC
T ss_pred HHHhhCCcccCEEECcCCcceEeCHHHh------cCCcccCEEEecCCCeec
Confidence 4 46789999999999999999887643 678999999999986543
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=7.1e-08 Score=89.66 Aligned_cols=102 Identities=17% Similarity=0.140 Sum_probs=45.1
Q ss_pred CCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC-CCCCCCCccEEeecCCCCCeeeCC--CCC-CCCCCC
Q 044605 123 YGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP-SVGHLPLLKNLVIKGMGRMAKAGT--TGG-DQQAAK 198 (405)
Q Consensus 123 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~--~~~-~~~~~~ 198 (405)
.+++.|.+.+.....--.++. ..+++|+.|+++++. +..+. .-+.++.++.+..... .++. |.+ ......
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~-~~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLR-DEFPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHH-HSCTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred CceeEEEEeccccHHHHHHHH-HhhccCeEEecCcce-eEEecCcccccccccccccccc----ccCHHHhccccccccc
Confidence 357777777643211111222 026778888888776 33110 1122333233332221 2332 100 000001
Q ss_pred CCCcccEEeeccCccccccCCC----CCCcccEEEEecc
Q 044605 199 GFPCLRELSIINCSKLKGRLPQ----HFSSLERIVIMSC 233 (405)
Q Consensus 199 ~~~~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c 233 (405)
++++|+++++.+ .++ .++. .+++|+.+++.+.
T Consensus 99 g~~~L~~l~L~~--~i~-~I~~~aF~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 99 GKQTLEKVILSE--KIK-NIEDAAFKGCDNLKICQIRKK 134 (329)
T ss_dssp ECTTCCC-CBCT--TCC-EECTTTTTTCTTCCEEEBCCS
T ss_pred ccCCCcEEECCc--ccc-chhHHHhhcCcccceEEcCCC
Confidence 267777777766 344 2332 4566777777654
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.55 E-value=4.4e-06 Score=79.66 Aligned_cols=140 Identities=11% Similarity=0.052 Sum_probs=84.3
Q ss_pred CcccEEEEecc-CCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccccc
Q 044605 223 SSLERIVIMSC-EQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPE 298 (405)
Q Consensus 223 ~~L~~L~l~~c-~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~ 298 (405)
.+|+.+.+... ..+ ...|..+++|+.+.+.++.........++...|..+.+| +.+.+ .++.++.
T Consensus 248 ~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-----------~i~~I~~ 316 (401)
T 4fdw_A 248 SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-----------SIRILGQ 316 (401)
T ss_dssp CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-----------TCCEECT
T ss_pred CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-----------ceEEEhh
Confidence 44555555331 122 345666777777777665321000003566667777666 55542 1245543
Q ss_pred -ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC---CCcCCccEEeecCCcchHHHh
Q 044605 299 -GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN---GLLPSVVYLSIYLCPDLEEKC 374 (405)
Q Consensus 299 -~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~i~~c~~l~~~~ 374 (405)
++.++++|+.+.+.. .++.|....| .++ +|+++++.++ ....++.. +.+.++..|.+..- . .+.+
T Consensus 317 ~aF~~c~~L~~l~lp~-~l~~I~~~aF------~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~-~-~~~y 385 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPA-NVTQINFSAF------NNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE-S-VEKY 385 (401)
T ss_dssp TTTTTCCSCCEEEECT-TCCEECTTSS------SSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG-G-HHHH
T ss_pred hhhcCCCCccEEEECc-cccEEcHHhC------CCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH-H-HHHh
Confidence 677899999999954 4888887776 788 9999999986 44555443 34457888888762 2 2333
Q ss_pred hcCccccccccc
Q 044605 375 KKDEREYCHLVA 386 (405)
Q Consensus 375 ~~~~~~~~~~i~ 386 (405)
+ .+..|....
T Consensus 386 ~--~a~~W~~f~ 395 (401)
T 4fdw_A 386 K--NANGWRDFT 395 (401)
T ss_dssp H--HSTTGGGGG
T ss_pred h--hccchhhhh
Confidence 3 345677653
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.54 E-value=1e-07 Score=98.17 Aligned_cols=66 Identities=18% Similarity=0.304 Sum_probs=35.1
Q ss_pred cccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCC
Q 044605 294 ESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLC 367 (405)
Q Consensus 294 ~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c 367 (405)
+.+|..+.++++|+.|+|++|.++.||.. +.++++|++|++++| .++.+|.. ..+++|++|+++++
T Consensus 260 ~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~-------~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 260 TELPAEIKNLSNLRVLDLSHNRLTSLPAE-------LGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCCGGGGGGTTCCEEECTTSCCSSCCSS-------GGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTS
T ss_pred cccChhhhCCCCCCEEeCcCCcCCccChh-------hcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCC
Confidence 44555555555555555555555555544 345555555555554 34455543 33445555555555
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.53 E-value=4.6e-08 Score=100.71 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=50.9
Q ss_pred CCcccEEeeccCccccccCCC---CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCC
Q 044605 200 FPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNP 274 (405)
Q Consensus 200 ~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~ 274 (405)
++.|+.|+++++. +. .+|. .+++|+.|+++++. .+|..|..+++|++|++++|... .+|. .+..+++
T Consensus 223 l~~L~~L~Ls~n~-l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-----~lp~-~~~~l~~ 294 (727)
T 4b8c_D 223 DQLWHALDLSNLQ-IF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-----SLPA-ELGSCFQ 294 (727)
T ss_dssp CCCCCEEECTTSC-CS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-----SCCS-SGGGGTT
T ss_pred CCCCcEEECCCCC-CC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-----ccCh-hhcCCCC
Confidence 5555566655542 22 2332 34555555555442 33455556666666666666432 2222 3333444
Q ss_pred C--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccc
Q 044605 275 G--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVS 318 (405)
Q Consensus 275 L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~ 318 (405)
| |++++| .++.+|..+..+++|+.|++++|.++.
T Consensus 295 L~~L~L~~N----------~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 295 LKYFYFFDN----------MVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CSEEECCSS----------CCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCEEECCCC----------CCCccChhhhcCCCccEEeCCCCccCC
Confidence 4 444443 334555556666666666666665553
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.43 E-value=3.2e-05 Score=73.71 Aligned_cols=229 Identities=10% Similarity=0.049 Sum_probs=148.1
Q ss_pred CccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCC
Q 044605 124 GLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFP 201 (405)
Q Consensus 124 ~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 201 (405)
+|+.+.+..+ ...++..-+. . .+|+.+.+.+ .++.++ .+..+++|+.+.+.++ .+..++. .+....
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~-~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~------~aF~~~ 203 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFF-N-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPA------STFVYA 203 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTT-T-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECT------TTTTTC
T ss_pred CccEEEeCCC-ccEECHHhcC-C-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEech------hhEeec
Confidence 5777776543 2233332221 2 3688888864 356665 3777899999998763 4666655 122357
Q ss_pred cccEEeeccCccccccCCC----CCCcccEEEEecc-CCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC
Q 044605 202 CLRELSIINCSKLKGRLPQ----HFSSLERIVIMSC-EQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG 275 (405)
Q Consensus 202 ~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c-~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L 275 (405)
+|+.+.+.+ .++ .++. .+++|+.+.+... ..+ ...|.. .+|+.+.+.+. +. .++...|..+.+|
T Consensus 204 ~L~~l~lp~--~l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~--i~----~I~~~aF~~c~~L 273 (401)
T 4fdw_A 204 GIEEVLLPV--TLK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG--VT----NIASRAFYYCPEL 273 (401)
T ss_dssp CCSEEECCT--TCC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT--CC----EECTTTTTTCTTC
T ss_pred ccCEEEeCC--chh-eehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC--cc----EEChhHhhCCCCC
Confidence 888888864 244 2332 5778888888642 233 234444 78999999543 44 6778889888888
Q ss_pred --eeecCCCCccEEecCCCCcccc-cccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCC
Q 044605 276 --PEKSRTEVLPWEIGSPDQESLP-EGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPE 352 (405)
Q Consensus 276 --l~l~~~~~l~l~i~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~ 352 (405)
+.+.+.... ......++ .++.++++|+.+.+. +.++.|+...| .+|++|+.+.+.+ .++.+..
T Consensus 274 ~~l~l~~~~~~-----~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF------~~c~~L~~l~lp~--~l~~I~~ 339 (401)
T 4fdw_A 274 AEVTTYGSTFN-----DDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLL------GGNRKVTQLTIPA--NVTQINF 339 (401)
T ss_dssp CEEEEESSCCC-----CCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTT------TTCCSCCEEEECT--TCCEECT
T ss_pred CEEEeCCcccc-----CCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhh------cCCCCccEEEECc--cccEEcH
Confidence 777654210 00112344 477899999999998 55888888776 8899999999965 4777766
Q ss_pred C--CCcCCccEEeecCC--cchHHHhhcCcccccccc-cccCeeEecce
Q 044605 353 N--GLLPSVVYLSIYLC--PDLEEKCKKDEREYCHLV-ADIPFVQLNHK 396 (405)
Q Consensus 353 ~--~~~~~L~~L~i~~c--~~l~~~~~~~~~~~~~~i-~~i~~~~~~~~ 396 (405)
. ..+ +|+.+++.+. +.+ ....|..+ .+++.+.+...
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l-------~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQV-------FEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBC-------CCSSCCCSCTTCCEEEECGG
T ss_pred HhCCCC-CCCEEEEcCCCCccc-------ccccccCCCCCccEEEeCHH
Confidence 5 455 9999999986 222 22334444 46677777654
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.41 E-value=9.7e-07 Score=73.59 Aligned_cols=40 Identities=35% Similarity=0.581 Sum_probs=24.6
Q ss_pred cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605 300 LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP 345 (405)
Q Consensus 300 ~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~ 345 (405)
+..+++|+.|++++|+++.++...| .++++|++|++++|+
T Consensus 74 f~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 74 FDKLTQLTQLSLNDNQLKSIPRGAF------DNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTT------TTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCCCccCEeCHHHh------cCCCCCCEEEeCCCC
Confidence 3566666666666666666665433 556666666666654
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.41 E-value=1.1e-06 Score=73.57 Aligned_cols=40 Identities=33% Similarity=0.578 Sum_probs=23.3
Q ss_pred cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605 300 LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP 345 (405)
Q Consensus 300 ~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~ 345 (405)
+.++++|+.|++++|+++.+|...| .++++|++|++++|+
T Consensus 77 ~~~l~~L~~L~L~~N~l~~l~~~~~------~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 77 FDKLTQLTQLDLNDNHLKSIPRGAF------DNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTT------TTCTTCSEEECCSSC
T ss_pred hCCcchhhEEECCCCccceeCHHHh------ccccCCCEEEeCCCC
Confidence 3456666666666666666655433 455566666666654
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.35 E-value=3.5e-05 Score=73.20 Aligned_cols=42 Identities=7% Similarity=-0.124 Sum_probs=33.0
Q ss_pred cccccCchhhheeeEEEEEccCCCCccCccc-cCCCccCcccCc
Q 044605 14 METINGDFTEIFVIYLILVGDLTESKEMPLR-IGKLTSLRTLTK 56 (405)
Q Consensus 14 l~~l~~~~~~~~~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~~ 56 (405)
+..|....|..+.+|+.+++.. .++.++.. |.++.+|+.+++
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~l 101 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINI 101 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECC
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEe
Confidence 4456677777889999999974 58888655 889999998864
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.27 E-value=4.4e-06 Score=69.86 Aligned_cols=65 Identities=28% Similarity=0.454 Sum_probs=54.6
Q ss_pred ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605 297 PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 297 p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 368 (405)
|..+.++++|+.|++++|+++.+|...| .++++|++|++++| .++.++.. ..+++|++|++++++
T Consensus 50 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~------~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVF------DKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTT------TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred HHHhcCCcCCCEEECCCCCCCccChhHh------CCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCCC
Confidence 4467899999999999999999987754 78899999999996 56777764 456799999999875
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.25 E-value=5.6e-06 Score=68.88 Aligned_cols=68 Identities=29% Similarity=0.459 Sum_probs=55.8
Q ss_pred ccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605 294 ESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 294 ~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 368 (405)
+.+ |..+.++++|+.|++++|+++.++...| .++++|++|++++| .++.++.. ..+++|++|++++.|
T Consensus 43 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 43 TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF------DKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT------TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccChhhhcCcccCCEEECCCCCcCccChhhc------cCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 344 4567899999999999999999988754 78899999999996 56777654 456799999999864
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.13 E-value=2.1e-08 Score=85.98 Aligned_cols=18 Identities=11% Similarity=0.314 Sum_probs=8.4
Q ss_pred CCCCccEEEEeCCccccc
Q 044605 302 KLSHITRISIVGSYLVSF 319 (405)
Q Consensus 302 ~l~~L~~L~l~~~~l~~l 319 (405)
.+++|+.|++++|.++.+
T Consensus 113 ~l~~L~~L~l~~N~i~~~ 130 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNW 130 (198)
T ss_dssp HHHHSSEEEESEEECCCH
T ss_pred cCCCCCEEECCCCcCCch
Confidence 444445555544444443
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.12 E-value=0.00048 Score=65.27 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=44.8
Q ss_pred ccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecC
Q 044605 294 ESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYL 366 (405)
Q Consensus 294 ~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~ 366 (405)
+.++. ++.++++|+++.+.+ .++.|....| .+|.+|+.+.+.. .++.+... ..+.+|+.+++.+
T Consensus 309 ~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF------~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 309 KFIGEEAFESCTSLVSIDLPY-LVEEIGKRSF------RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCT-TCCEECTTTT------TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred ceechhhhcCCCCCCEEEeCC-cccEEhHHhc------cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 44433 567888888888753 4777776665 7888888888864 36777655 5566888888754
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.03 E-value=9.9e-06 Score=75.53 Aligned_cols=85 Identities=18% Similarity=0.168 Sum_probs=49.7
Q ss_pred CCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccc-cccCCCCCccEEEEeCCcc
Q 044605 240 CTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLP-EGLHKLSHITRISIVGSYL 316 (405)
Q Consensus 240 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp-~~~~~l~~L~~L~l~~~~l 316 (405)
++.+++|+.|++++++.+. .++.+.|..+++| |+++++ +++.+| ..+.++++|+.|+|++|++
T Consensus 27 l~~~~~L~~L~l~~~n~l~----~~~~~~~~~l~~L~~L~l~~N----------~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQ----HLELRDLRGLGELRNLTIVKS----------GLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp SCSCSCCSEEECCSCSSCC----EECGGGSCSCCCCSEEECCSS----------CCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred CCCCCCeeEEEccCCCCCC----CcChhHhccccCCCEEECCCC----------ccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 4455556666665422233 4444455555555 555554 334443 3567778888888888888
Q ss_pred cccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605 317 VSFPKGGLESLSFVRNLTSLERLELSRCP 345 (405)
Q Consensus 317 ~~l~~~~~~~l~~l~~l~~L~~L~l~~c~ 345 (405)
+.+|...| ..++ |++|++.+|+
T Consensus 93 ~~~~~~~~------~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 93 ESLSWKTV------QGLS-LQELVLSGNP 114 (347)
T ss_dssp SCCCSTTT------CSCC-CCEEECCSSC
T ss_pred ceeCHHHc------ccCC-ceEEEeeCCC
Confidence 77776543 3333 7777777755
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.96 E-value=2.4e-05 Score=72.91 Aligned_cols=97 Identities=21% Similarity=0.156 Sum_probs=73.7
Q ss_pred eEEEcCcCCccccccccccCCCCCCCCC--eeecC-CCCccEEecCCCCcccc-cccCCCCCccEEEEeCCcccccccCC
Q 044605 248 ELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSR-TEVLPWEIGSPDQESLP-EGLHKLSHITRISIVGSYLVSFPKGG 323 (405)
Q Consensus 248 ~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~-~~~l~l~i~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~l~~~~ 323 (405)
.++.+++..+. .+|. ++.+++| |++++ + .++.+| ..+.++++|+.|+|++|+++.++...
T Consensus 12 ~v~~~~~n~l~----~ip~--l~~~~~L~~L~l~~~n----------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 75 (347)
T 2ifg_A 12 GLRCTRDGALD----SLHH--LPGAENLTELYIENQQ----------HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75 (347)
T ss_dssp CEECCSSCCCT----TTTT--SCSCSCCSEEECCSCS----------SCCEECGGGSCSCCCCSEEECCSSCCCEECTTG
T ss_pred EEEcCCCCCCC----ccCC--CCCCCCeeEEEccCCC----------CCCCcChhHhccccCCCEEECCCCccceeCHHH
Confidence 34555543454 5665 7777788 88875 4 456676 47899999999999999999998765
Q ss_pred CCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605 324 LESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 324 ~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 368 (405)
| .++++|++|++++| .++.+|.. ..+ +|+.|++.+++
T Consensus 76 ~------~~l~~L~~L~l~~N-~l~~~~~~~~~~~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 76 F------HFTPRLSRLNLSFN-ALESLSWKTVQGL-SLQELVLSGNP 114 (347)
T ss_dssp G------GSCSCCCEEECCSS-CCSCCCSTTTCSC-CCCEEECCSSC
T ss_pred h------cCCcCCCEEeCCCC-ccceeCHHHcccC-CceEEEeeCCC
Confidence 4 78899999999996 56778765 233 49999999864
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.88 E-value=7.8e-08 Score=82.43 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=51.8
Q ss_pred cccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCC---CCCcCCccEEeecCCc
Q 044605 294 ESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPE---NGLLPSVVYLSIYLCP 368 (405)
Q Consensus 294 ~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~i~~c~ 368 (405)
+.+|..+..+++|+.|++++|+++.+|. +.++++|++|++++|. ++.++. ...+++|++|++++++
T Consensus 83 ~~l~~~~~~~~~L~~L~L~~N~l~~l~~--------~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 83 KKIENLDAVADTLEELWISYNQIASLSG--------IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp CSCSSHHHHHHHCSEEEEEEEECCCHHH--------HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ccccchhhcCCcCCEEECcCCcCCcCCc--------cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 3455556677899999999999988872 4778899999999974 565543 2556799999999985
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=1.3e-05 Score=66.46 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=17.5
Q ss_pred cccEEEEeccCCc----cccCCCCCCcceEEEcCcCCc
Q 044605 224 SLERIVIMSCEQL----LVSCTTLPLLCELEIDGFGEV 257 (405)
Q Consensus 224 ~L~~L~l~~c~~l----~~~l~~l~~L~~L~l~~~~~l 257 (405)
+|++|++++|..+ ...+..+++|++|++++|+.+
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCC
Confidence 4555555555544 122344566666666666544
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.75 E-value=1.3e-05 Score=75.10 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=7.0
Q ss_pred CCCccEEEEeCCccc
Q 044605 303 LSHITRISIVGSYLV 317 (405)
Q Consensus 303 l~~L~~L~l~~~~l~ 317 (405)
+++|++|+++.|.++
T Consensus 278 ~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 278 LPQLETMDISAGVLT 292 (362)
T ss_dssp GGGCSEEECCSSCCB
T ss_pred CCCCCEEECCCCCCC
Confidence 344555555444443
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.71 E-value=1.9e-05 Score=74.09 Aligned_cols=128 Identities=18% Similarity=0.173 Sum_probs=68.0
Q ss_pred cCCCCCCccEEEEEeeCCC----------CCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeee
Q 044605 118 MLKPHYGLKELKVQNYGGT----------KFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKA 187 (405)
Q Consensus 118 ~l~~~~~L~~L~l~~~~~~----------~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~ 187 (405)
+...+++|+.|.+.+.... .++.++. .+++|++|++.++... .++.+ .+++|++|.+..+.-....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~--~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD--AMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH--TCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHh--cCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHH
Confidence 3444568888887653221 1112222 5678888888876432 34443 3788888888755321111
Q ss_pred CC-CCCCCCCCCCCCcccEEeeccCcc-------ccc---cCC-CCCCcccEEEEeccCCc---cc---cCCCCCCcceE
Q 044605 188 GT-TGGDQQAAKGFPCLRELSIINCSK-------LKG---RLP-QHFSSLERIVIMSCEQL---LV---SCTTLPLLCEL 249 (405)
Q Consensus 188 ~~-~~~~~~~~~~~~~L~~L~l~~~~~-------l~~---~l~-~~~~~L~~L~l~~c~~l---~~---~l~~l~~L~~L 249 (405)
.. ++ ...+|+|++|+++.+.. +.+ .+. ..+|+|+.|.+.+|... .. ..+.+|+|++|
T Consensus 210 l~~l~-----~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~L 284 (362)
T 2ra8_A 210 VEDIL-----GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM 284 (362)
T ss_dssp HHHHH-----HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEE
T ss_pred HHHHH-----HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEE
Confidence 00 00 11378888888753111 110 111 24677888877776532 11 11346777777
Q ss_pred EEcCc
Q 044605 250 EIDGF 254 (405)
Q Consensus 250 ~l~~~ 254 (405)
+++.|
T Consensus 285 dLs~n 289 (362)
T 2ra8_A 285 DISAG 289 (362)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 77654
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.71 E-value=3.1e-05 Score=64.30 Aligned_cols=83 Identities=12% Similarity=0.196 Sum_probs=58.6
Q ss_pred CCccEEEEEcCCCCCc--CCCCCCCCCccEEeecCCCCCeeeCC--CCCCCCCC-CCCCcccEEeeccCccccc----cC
Q 044605 148 ENLVVLRFRNCNQCTS--LPSVGHLPLLKNLVIKGMGRMAKAGT--TGGDQQAA-KGFPCLRELSIINCSKLKG----RL 218 (405)
Q Consensus 148 ~~L~~L~l~~~~~~~~--l~~l~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~-~~~~~L~~L~l~~~~~l~~----~l 218 (405)
-.|+.|++++|. +++ +..+..+++|++|++.+|..+.+.+. +.. . ...++|++|++++|..+++ .+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~----~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ----LENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHT----CHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHh----cccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 458888888887 654 34577888999999988877665432 111 0 0135799999999987775 22
Q ss_pred CCCCCcccEEEEeccCCc
Q 044605 219 PQHFSSLERIVIMSCEQL 236 (405)
Q Consensus 219 ~~~~~~L~~L~l~~c~~l 236 (405)
. .+++|+.|++++|+.+
T Consensus 136 ~-~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 136 H-HFRNLKYLFLSDLPGV 152 (176)
T ss_dssp G-GCTTCCEEEEESCTTC
T ss_pred h-cCCCCCEEECCCCCCC
Confidence 2 5789999999999866
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.50 E-value=0.014 Score=54.98 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=71.3
Q ss_pred ccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCC
Q 044605 238 VSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGS 314 (405)
Q Consensus 238 ~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~ 314 (405)
..|..+..|+.+.+.+. +. .+....|..+..| +.+.. .++.++. ++.++.+|+++.|..
T Consensus 259 ~aF~~c~~L~~i~lp~~--~~----~I~~~aF~~c~~L~~i~l~~-----------~i~~I~~~aF~~c~~L~~i~lp~- 320 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS--VV----SIGTGAFMNCPALQDIEFSS-----------RITELPESVFAGCISLKSIDIPE- 320 (394)
T ss_dssp TTTTTCSSCCEEECCTT--CC----EECTTTTTTCTTCCEEECCT-----------TCCEECTTTTTTCTTCCEEECCT-
T ss_pred ceeeecccccEEecccc--cc----eecCcccccccccccccCCC-----------cccccCceeecCCCCcCEEEeCC-
Confidence 35666778888877543 22 4455566666666 44432 2245554 667889999998864
Q ss_pred cccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605 315 YLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 315 ~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 368 (405)
.++.|.+..| .+|.+|+++.+-+ .++.+... ..+++|+.+++.+..
T Consensus 321 ~v~~I~~~aF------~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 321 GITQILDDAF------AGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEECTTTT------TTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred cccEehHhHh------hCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 4777777765 7888999999854 46777665 566789999988753
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.43 E-value=1.9e-06 Score=81.42 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=24.8
Q ss_pred ccccCCCCCccEEEEeCCcccccccCCCCCccc-CCCCCCcCEEeeecCC
Q 044605 297 PEGLHKLSHITRISIVGSYLVSFPKGGLESLSF-VRNLTSLERLELSRCP 345 (405)
Q Consensus 297 p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~ 345 (405)
+..+...++|+.|++++|.+++.... .++. +...++|++|++++|+
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~---~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAAL---ALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHH---HHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHH---HHHHHHHhCCCCCEEeccCCC
Confidence 33445556777777777666542110 0000 2345677777777764
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.15 E-value=0.052 Score=50.65 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=32.2
Q ss_pred ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEee
Q 044605 299 GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSI 364 (405)
Q Consensus 299 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i 364 (405)
++.++++|+.+.+.++.++.|++..| .+|.+|+.+.+.+ .++.+... ..+.+|+.+.+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF------~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVF------MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTT------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccccccccccceehhhhh------cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 44566666666666666666665554 5666666666642 34445433 33344554444
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.11 E-value=3e-05 Score=73.09 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=46.5
Q ss_pred cccccCCCCCccEEEEeCCcccccccCCCCCccc-CCCCCCcCEEeeecCCCCcccC-----CC-CCcCCccEEeecCCc
Q 044605 296 LPEGLHKLSHITRISIVGSYLVSFPKGGLESLSF-VRNLTSLERLELSRCPILKSFP-----EN-GLLPSVVYLSIYLCP 368 (405)
Q Consensus 296 lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~~l~~l~-----~~-~~~~~L~~L~i~~c~ 368 (405)
++..+...++|++|++++|.+++..- ..++. +...++|++|++++|. +++.. .. ...++|++|++++|+
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~---~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGL---ELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHH---HHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHH---HHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 44456688999999999988875310 01111 4567899999999975 44332 11 123689999999985
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.80 E-value=0.13 Score=48.23 Aligned_cols=58 Identities=10% Similarity=0.194 Sum_probs=42.3
Q ss_pred ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeec
Q 044605 299 GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIY 365 (405)
Q Consensus 299 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~ 365 (405)
++.++++|+.+.+. +.++.|+...| .+|.+|+.+.+.+ .++.+... ..+.+|+.+.+.
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF------~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVF------AGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTT------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEC
T ss_pred ccccccccccccCC-CcccccCceee------cCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEEC
Confidence 55677888888774 55777777765 7889999999864 46777655 455678888774
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.33 E-value=0.0016 Score=57.91 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=32.7
Q ss_pred cccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccC
Q 044605 296 LPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFP 351 (405)
Q Consensus 296 lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~ 351 (405)
+|..+..+++|+.|++++|+++++.+ +..+..+ +|++|++++|+.-..+|
T Consensus 188 l~~~~~~l~~L~~L~Ls~N~i~~~~~-----l~~l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 188 MSSIVQKAPNLKILNLSGNELKSERE-----LDKIKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp GTTHHHHSTTCCEEECTTSCCCSGGG-----GGGGTTS-CCSEEECTTSTTGGGCS
T ss_pred chhHHhhCCCCCEEECCCCccCCchh-----hhhcccC-CcceEEccCCcCccccC
Confidence 44455678888888888888877632 1112334 78888888877555444
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.46 E-value=0.0014 Score=55.04 Aligned_cols=62 Identities=11% Similarity=0.178 Sum_probs=34.3
Q ss_pred ccCCCCCccEEEEeCCcccc-----cccCCCCCcccCCCCCCcCEEee--ecCCCCccc-----CCC-CCcCCccEEeec
Q 044605 299 GLHKLSHITRISIVGSYLVS-----FPKGGLESLSFVRNLTSLERLEL--SRCPILKSF-----PEN-GLLPSVVYLSIY 365 (405)
Q Consensus 299 ~~~~l~~L~~L~l~~~~l~~-----l~~~~~~~l~~l~~l~~L~~L~l--~~c~~l~~l-----~~~-~~~~~L~~L~i~ 365 (405)
.+...++|++|++++|.+.+ +... +...++|++|++ ++|. +++- ... ...++|++|+++
T Consensus 88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~-------L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 88 MLKVNNTLKSLNVESNFISGSGILALVEA-------LQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHHCSSCCEEECCSSCCCHHHHHHHHHG-------GGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHhCCCcCEEECcCCcCCHHHHHHHHHH-------HHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEecc
Confidence 34455667777777766654 2222 445567777777 4443 3321 111 112467788877
Q ss_pred CCc
Q 044605 366 LCP 368 (405)
Q Consensus 366 ~c~ 368 (405)
+|.
T Consensus 160 ~n~ 162 (185)
T 1io0_A 160 FTQ 162 (185)
T ss_dssp CSS
T ss_pred CCC
Confidence 763
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.28 E-value=0.0012 Score=55.50 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=24.8
Q ss_pred cccCCCCCccEEEE--eCCcccccccCCCCCccc-CCCCCCcCEEeeecCC
Q 044605 298 EGLHKLSHITRISI--VGSYLVSFPKGGLESLSF-VRNLTSLERLELSRCP 345 (405)
Q Consensus 298 ~~~~~l~~L~~L~l--~~~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~ 345 (405)
..+...++|++|++ ++|.+.+-- ...+.. +...++|++|++++|.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g---~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNV---EMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHH---HHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHhCCCceEEEecCCCCCCCHHH---HHHHHHHHHhCCCcCEEeccCCC
Confidence 34556667788888 556665310 000000 3445678888887754
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.43 E-value=0.015 Score=51.66 Aligned_cols=62 Identities=19% Similarity=0.159 Sum_probs=46.5
Q ss_pred CCCCCccEEEEeCCcccccccCCCCCccc-CCCCCCcCEEeeecCCCCcccCCCCCcC--CccEEeecCCc
Q 044605 301 HKLSHITRISIVGSYLVSFPKGGLESLSF-VRNLTSLERLELSRCPILKSFPENGLLP--SVVYLSIYLCP 368 (405)
Q Consensus 301 ~~l~~L~~L~l~~~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~--~L~~L~i~~c~ 368 (405)
.++++|+.|++++|+++.++. ++. +..+++|+.|++++| .++.+.....+. +|++|++.++|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~-----l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDD-----MSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGG-----GTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCCCCCCCcc-----chhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCc
Confidence 478999999999999987652 110 357899999999986 556653332223 89999999998
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.34 E-value=0.037 Score=43.24 Aligned_cols=47 Identities=28% Similarity=0.432 Sum_probs=35.7
Q ss_pred CCc--ccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605 292 DQE--SLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI 346 (405)
Q Consensus 292 ~l~--~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~ 346 (405)
+++ .+|..+ -++|+.|+|++|+++.|+...| ..+++|++|++.+|+.
T Consensus 19 ~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f------~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 19 GLTWASLPTAF--PVDTTELVLTGNNLTALPPGLL------DALPALRTAHLGANPW 67 (130)
T ss_dssp CCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTG------GGCTTCCEEECCSSCC
T ss_pred CCccccCCCCC--CcCCCEEECCCCcCCccChhhh------hhccccCEEEecCCCe
Confidence 455 677532 2368999999999999988765 6777899999998763
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.61 E-value=4.4 Score=37.30 Aligned_cols=59 Identities=5% Similarity=0.065 Sum_probs=42.4
Q ss_pred ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeec
Q 044605 299 GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIY 365 (405)
Q Consensus 299 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~ 365 (405)
++.++.+|+.+.+.. .++.++...| .+|.+|+.+.+.+ ..++.++.. ..+.+|+.+.+.
T Consensus 258 aF~~~~~l~~i~l~~-~i~~i~~~aF------~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 258 LLQNCTALKTLNFYA-KVKTVPYLLC------SGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTTCTTCCEEEECC-CCSEECTTTT------TTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred ccceeehhccccccc-cceecccccc------ccccccccccccc-cccceehhhhhcCCCCCCEEEcC
Confidence 566788888888854 4667776655 7889999999976 356777655 445677777774
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=86.65 E-value=0.85 Score=35.27 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=38.9
Q ss_pred EEEEeCCccc--ccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605 308 RISIVGSYLV--SFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP 368 (405)
Q Consensus 308 ~L~l~~~~l~--~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 368 (405)
.++-++++++ .+|.. + -++|++|++++| .++.++.+ ..+++|++|++.+.|
T Consensus 12 ~v~Cs~~~L~~~~vP~~----l-----p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA----F-----PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSC----C-----CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCC----C-----CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 5566678888 88854 1 257999999985 68888876 345699999999876
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=47.22 E-value=5 Score=33.40 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=35.0
Q ss_pred ccCCCCCccEEEEeCCcccccccCCCCCccc-CCCCCCcCEEeeecCC--CCcc-----cCCC-CCcCCccEEeecCC
Q 044605 299 GLHKLSHITRISIVGSYLVSFPKGGLESLSF-VRNLTSLERLELSRCP--ILKS-----FPEN-GLLPSVVYLSIYLC 367 (405)
Q Consensus 299 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~--~l~~-----l~~~-~~~~~L~~L~i~~c 367 (405)
.+..=+.|++|+|++|.+..- +...+.+ +..=+.|++|++++|. .+++ +... ..-+.|..|++..+
T Consensus 93 aL~~N~tL~~L~L~~N~Ig~~---Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 93 LIETSPSLRVLNVESNFLTPE---LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHCSSCCEEECCSSBCCHH---HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHhcCCccCeEecCCCcCCHH---HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 344446788888888777631 1111111 3444568888887642 2222 1111 11147788888754
No 164
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.70 E-value=82 Score=22.57 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=32.8
Q ss_pred Ccccc-cccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeec
Q 044605 293 QESLP-EGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSR 343 (405)
Q Consensus 293 l~~lp-~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~ 343 (405)
++.+. .++.++.+|+++.|-. .++.|-...| .+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF------~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQP-NIGLLYDGMF------SGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSS------TTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCC-chheEcHHHH------hccCCccEEEEcC
Confidence 34454 3678999999998864 3666666655 8899999999976
Done!