Query 044607
Match_columns 110
No_of_seqs 110 out of 1370
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:59:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05022 S-100A13 S-100A13: S-1 99.4 3.2E-12 7E-17 73.6 7.9 67 19-85 5-77 (89)
2 PF13499 EF-hand_7: EF-hand do 99.4 3.8E-12 8.3E-17 69.2 7.7 59 23-81 1-66 (66)
3 smart00027 EH Eps15 homology d 99.3 1.4E-11 3.1E-16 71.8 8.6 71 16-86 4-75 (96)
4 cd05027 S-100B S-100B: S-100B 99.3 3.1E-11 6.6E-16 69.4 8.0 67 19-85 5-81 (88)
5 KOG0027 Calmodulin and related 99.3 3.4E-11 7.5E-16 75.5 8.4 81 3-83 64-149 (151)
6 COG5126 FRQ1 Ca2+-binding prot 99.3 5.9E-11 1.3E-15 74.8 9.3 79 3-83 75-156 (160)
7 COG5126 FRQ1 Ca2+-binding prot 99.3 4.5E-11 9.8E-16 75.3 7.9 73 13-86 11-86 (160)
8 cd00052 EH Eps15 homology doma 99.2 9.8E-11 2.1E-15 63.5 6.3 60 25-84 2-62 (67)
9 cd05026 S-100Z S-100Z: S-100Z 99.2 2.2E-10 4.8E-15 66.5 8.0 67 19-85 7-83 (93)
10 KOG0027 Calmodulin and related 99.2 2.9E-10 6.2E-15 71.3 8.5 71 16-86 2-75 (151)
11 cd00213 S-100 S-100: S-100 dom 99.1 3.3E-10 7.2E-15 64.9 7.3 69 18-86 4-82 (88)
12 cd05031 S-100A10_like S-100A10 99.1 5.8E-10 1.3E-14 64.8 7.8 66 20-85 6-81 (94)
13 cd05029 S-100A6 S-100A6: S-100 99.1 7.7E-10 1.7E-14 63.6 8.0 67 19-85 7-81 (88)
14 cd05025 S-100A1 S-100A1: S-100 99.1 7.9E-10 1.7E-14 63.9 8.1 66 20-85 7-82 (92)
15 PTZ00183 centrin; Provisional 99.1 1.1E-09 2.4E-14 68.4 8.1 72 13-84 8-82 (158)
16 cd05023 S-100A11 S-100A11: S-1 99.1 2.2E-09 4.7E-14 61.8 8.1 67 19-85 6-82 (89)
17 cd00252 SPARC_EC SPARC_EC; ext 99.0 2.7E-09 5.7E-14 64.3 7.4 63 18-81 44-106 (116)
18 PTZ00184 calmodulin; Provision 99.0 6.7E-09 1.4E-13 64.1 8.1 70 15-84 4-76 (149)
19 KOG0034 Ca2+/calmodulin-depend 99.0 6.2E-09 1.3E-13 67.4 8.1 79 4-84 88-176 (187)
20 cd00051 EFh EF-hand, calcium b 98.9 9.8E-09 2.1E-13 53.8 6.8 58 24-81 2-62 (63)
21 PTZ00184 calmodulin; Provision 98.9 2.3E-08 5E-13 61.6 9.1 59 23-81 85-146 (149)
22 KOG0044 Ca2+ sensor (EF-Hand s 98.9 1.3E-08 2.9E-13 66.1 7.9 82 3-86 47-131 (193)
23 PTZ00183 centrin; Provisional 98.9 2.5E-08 5.4E-13 62.3 9.0 60 23-82 91-153 (158)
24 KOG0041 Predicted Ca2+-binding 98.9 1.2E-08 2.6E-13 66.1 7.4 79 14-92 91-172 (244)
25 KOG0037 Ca2+-binding protein, 98.8 2.4E-08 5.3E-13 65.3 7.5 67 20-86 122-191 (221)
26 KOG0030 Myosin essential light 98.8 2.2E-08 4.7E-13 61.4 6.0 74 15-88 4-82 (152)
27 PF13833 EF-hand_8: EF-hand do 98.8 5.9E-08 1.3E-12 50.5 6.4 49 35-83 1-53 (54)
28 PF14658 EF-hand_9: EF-hand do 98.7 1E-07 2.3E-12 51.5 6.4 57 27-83 3-64 (66)
29 KOG0028 Ca2+-binding protein ( 98.7 2.2E-07 4.8E-12 58.2 8.4 80 3-84 89-171 (172)
30 cd05030 calgranulins Calgranul 98.7 1.4E-07 3.1E-12 54.1 7.1 66 19-84 5-80 (88)
31 PF12763 EF-hand_4: Cytoskelet 98.7 1.8E-07 3.9E-12 55.3 7.1 70 15-85 3-73 (104)
32 KOG0028 Ca2+-binding protein ( 98.6 2.1E-07 4.5E-12 58.4 7.3 71 15-85 26-99 (172)
33 cd05024 S-100A10 S-100A10: A s 98.6 3.1E-07 6.7E-12 52.9 7.4 65 20-85 6-78 (91)
34 PF00036 EF-hand_1: EF hand; 98.6 7.6E-08 1.6E-12 44.0 3.6 27 24-50 2-28 (29)
35 PLN02964 phosphatidylserine de 98.6 7.2E-07 1.6E-11 67.1 9.6 69 16-84 173-244 (644)
36 KOG0030 Myosin essential light 98.5 6.6E-07 1.4E-11 54.9 7.3 79 3-82 69-150 (152)
37 KOG0031 Myosin regulatory ligh 98.5 6.1E-07 1.3E-11 56.0 6.6 66 14-83 24-92 (171)
38 PRK12309 transaldolase/EF-hand 98.5 9.3E-07 2E-11 63.2 8.3 72 4-85 314-387 (391)
39 KOG0040 Ca2+-binding actin-bun 98.5 8.3E-07 1.8E-11 71.1 8.5 80 13-92 2244-2333(2399)
40 KOG0031 Myosin regulatory ligh 98.5 2.8E-06 6E-11 53.1 9.1 76 5-82 86-164 (171)
41 PF13405 EF-hand_6: EF-hand do 98.4 4.5E-07 9.7E-12 42.0 3.6 30 23-52 1-31 (31)
42 PF00036 EF-hand_1: EF hand; 98.4 6.9E-07 1.5E-11 40.8 3.9 29 56-84 1-29 (29)
43 KOG0037 Ca2+-binding protein, 98.4 2E-06 4.4E-11 56.4 6.7 66 21-86 56-125 (221)
44 PLN02964 phosphatidylserine de 98.3 3.6E-06 7.7E-11 63.5 8.2 69 13-85 134-209 (644)
45 KOG0044 Ca2+ sensor (EF-Hand s 98.3 3.7E-06 8.1E-11 54.7 6.5 75 15-92 22-101 (193)
46 KOG0034 Ca2+/calmodulin-depend 98.2 7.4E-06 1.6E-10 53.2 7.2 70 16-86 27-98 (187)
47 KOG0377 Protein serine/threoni 98.2 7.4E-06 1.6E-10 59.1 7.3 65 22-86 547-618 (631)
48 PF13202 EF-hand_5: EF hand; P 98.2 4E-06 8.7E-11 36.9 3.4 23 25-47 2-24 (25)
49 KOG0038 Ca2+-binding kinase in 98.1 1.5E-05 3.2E-10 49.6 6.7 70 14-84 101-178 (189)
50 KOG0036 Predicted mitochondria 98.1 2.3E-05 5.1E-10 55.9 7.9 71 15-85 7-81 (463)
51 KOG0046 Ca2+-binding actin-bun 98.1 2.1E-05 4.6E-10 57.6 7.8 73 13-86 10-88 (627)
52 KOG0036 Predicted mitochondria 98.0 3.9E-05 8.5E-10 54.8 7.7 65 20-84 80-147 (463)
53 PF10591 SPARC_Ca_bdg: Secrete 98.0 1.1E-05 2.3E-10 48.4 3.9 60 20-79 52-112 (113)
54 PF13833 EF-hand_8: EF-hand do 98.0 4.1E-05 8.9E-10 39.6 5.3 44 3-49 8-52 (54)
55 KOG4223 Reticulocalbin, calume 97.8 9.8E-05 2.1E-09 51.2 7.0 67 20-86 161-231 (325)
56 PF14788 EF-hand_10: EF hand; 97.8 0.00012 2.5E-09 37.6 5.5 46 39-84 2-50 (51)
57 PF13202 EF-hand_5: EF hand; P 97.8 5.8E-05 1.3E-09 33.1 3.4 24 58-81 2-25 (25)
58 KOG4223 Reticulocalbin, calume 97.6 0.00025 5.3E-09 49.3 6.5 76 10-85 65-143 (325)
59 PF13499 EF-hand_7: EF-hand do 97.6 0.00024 5.3E-09 38.0 5.2 46 3-48 20-66 (66)
60 PF13405 EF-hand_6: EF-hand do 97.6 0.00021 4.6E-09 32.7 3.8 26 57-82 2-27 (31)
61 smart00054 EFh EF-hand, calciu 97.3 0.00043 9.3E-09 29.9 3.1 26 24-49 2-27 (29)
62 KOG4251 Calcium binding protei 97.2 0.00062 1.4E-08 46.0 4.4 66 20-85 99-170 (362)
63 PF14788 EF-hand_10: EF hand; 97.1 0.0015 3.3E-08 33.5 4.3 28 24-51 23-50 (51)
64 cd05022 S-100A13 S-100A13: S-1 97.0 0.0025 5.4E-08 36.6 4.8 47 3-51 29-76 (89)
65 smart00054 EFh EF-hand, calciu 96.9 0.0021 4.6E-08 27.6 3.2 27 57-83 2-28 (29)
66 KOG1955 Ral-GTPase effector RA 96.8 0.0051 1.1E-07 45.4 6.4 71 16-86 225-296 (737)
67 KOG4065 Uncharacterized conser 96.8 0.0064 1.4E-07 36.6 5.3 65 13-79 60-141 (144)
68 cd05029 S-100A6 S-100A6: S-100 96.7 0.0049 1.1E-07 35.2 4.4 46 3-51 32-80 (88)
69 KOG0377 Protein serine/threoni 96.6 0.018 3.9E-07 42.2 7.7 66 21-86 463-578 (631)
70 KOG1029 Endocytic adaptor prot 96.5 0.0053 1.2E-07 47.5 4.9 68 18-85 191-259 (1118)
71 cd00051 EFh EF-hand, calcium b 96.5 0.013 2.8E-07 29.8 5.2 43 3-48 20-62 (63)
72 KOG2643 Ca2+ binding protein, 96.5 0.0024 5.3E-08 46.2 2.8 63 24-86 235-317 (489)
73 cd05026 S-100Z S-100Z: S-100Z 96.4 0.0098 2.1E-07 34.3 4.6 49 3-51 32-82 (93)
74 cd05027 S-100B S-100B: S-100B 96.3 0.016 3.4E-07 33.1 5.0 46 3-51 30-80 (88)
75 cd05023 S-100A11 S-100A11: S-1 96.3 0.009 1.9E-07 34.2 3.8 49 3-51 31-81 (89)
76 cd05024 S-100A10 S-100A10: A s 96.2 0.011 2.4E-07 34.1 4.1 50 3-52 27-78 (91)
77 PF09279 EF-hand_like: Phospho 96.2 0.017 3.7E-07 32.4 4.7 61 24-85 2-71 (83)
78 KOG2562 Protein phosphatase 2 96.2 0.022 4.8E-07 41.7 6.1 71 16-86 272-346 (493)
79 cd05030 calgranulins Calgranul 96.1 0.023 4.9E-07 32.4 4.9 49 3-51 30-80 (88)
80 cd05031 S-100A10_like S-100A10 96.0 0.019 4.1E-07 33.0 4.3 32 22-53 51-82 (94)
81 cd00052 EH Eps15 homology doma 95.9 0.039 8.4E-07 29.1 5.1 43 3-50 19-61 (67)
82 cd05025 S-100A1 S-100A1: S-100 95.8 0.041 8.8E-07 31.4 5.2 29 23-51 53-81 (92)
83 PF05517 p25-alpha: p25-alpha 95.8 0.13 2.8E-06 32.4 7.8 61 26-86 6-72 (154)
84 KOG0042 Glycerol-3-phosphate d 95.7 0.028 6.1E-07 42.3 5.2 77 16-92 587-666 (680)
85 smart00027 EH Eps15 homology d 95.5 0.056 1.2E-06 31.1 5.1 44 3-51 30-73 (96)
86 KOG0038 Ca2+-binding kinase in 95.4 0.034 7.3E-07 34.9 4.0 67 26-92 75-145 (189)
87 KOG4578 Uncharacterized conser 95.3 0.022 4.7E-07 40.2 3.3 60 27-86 338-401 (421)
88 KOG3555 Ca2+-binding proteogly 95.3 0.022 4.7E-07 40.4 3.3 67 16-83 244-310 (434)
89 KOG1707 Predicted Ras related/ 95.2 0.032 6.9E-07 42.1 4.0 71 15-85 308-379 (625)
90 KOG2562 Protein phosphatase 2 94.8 0.078 1.7E-06 38.9 5.0 57 23-79 352-420 (493)
91 KOG4666 Predicted phosphate ac 94.4 0.065 1.4E-06 37.9 3.7 68 17-84 291-360 (412)
92 PF12763 EF-hand_4: Cytoskelet 94.3 0.12 2.6E-06 30.5 4.2 33 15-50 39-71 (104)
93 KOG2643 Ca2+ binding protein, 94.2 0.46 1E-05 34.9 7.8 61 24-85 320-386 (489)
94 cd00252 SPARC_EC SPARC_EC; ext 94.2 0.08 1.7E-06 31.9 3.4 25 24-48 82-106 (116)
95 PF14658 EF-hand_9: EF-hand do 93.9 0.42 9.2E-06 25.9 5.5 28 23-50 36-64 (66)
96 cd00213 S-100 S-100: S-100 dom 93.7 0.2 4.3E-06 28.2 4.4 30 22-51 51-80 (88)
97 KOG0035 Ca2+-binding actin-bun 93.2 0.5 1.1E-05 37.6 7.0 78 6-83 731-816 (890)
98 KOG2243 Ca2+ release channel ( 93.2 0.21 4.5E-06 41.9 4.9 55 27-81 4062-4118(5019)
99 KOG0751 Mitochondrial aspartat 93.1 0.74 1.6E-05 34.6 7.3 57 30-86 82-139 (694)
100 KOG0169 Phosphoinositide-speci 93.0 0.37 8E-06 37.5 5.9 70 19-88 133-205 (746)
101 KOG0751 Mitochondrial aspartat 93.0 0.19 4.2E-06 37.5 4.2 30 24-53 110-139 (694)
102 PRK12309 transaldolase/EF-hand 91.2 0.46 1E-05 34.5 4.4 35 16-50 351-385 (391)
103 KOG4251 Calcium binding protei 90.8 1.5 3.2E-05 30.2 6.2 66 20-85 278-347 (362)
104 KOG0998 Synaptic vesicle prote 89.7 0.23 5E-06 39.5 1.9 72 15-86 276-348 (847)
105 KOG1029 Endocytic adaptor prot 87.6 3.9 8.4E-05 32.6 7.1 67 17-84 11-78 (1118)
106 PF09069 EF-hand_3: EF-hand; 87.6 3.8 8.2E-05 23.6 5.8 60 22-84 3-76 (90)
107 KOG3866 DNA-binding protein of 86.9 0.65 1.4E-05 32.8 2.5 56 27-82 249-323 (442)
108 KOG3555 Ca2+-binding proteogly 86.5 0.53 1.2E-05 33.7 2.0 62 22-83 211-278 (434)
109 PF05042 Caleosin: Caleosin re 86.3 5.4 0.00012 25.8 6.3 30 24-53 9-38 (174)
110 KOG2301 Voltage-gated Ca2+ cha 84.3 0.71 1.5E-05 39.1 2.0 70 15-84 1410-1485(1592)
111 KOG0041 Predicted Ca2+-binding 82.3 1.9 4.1E-05 28.7 3.0 36 56-91 100-135 (244)
112 PF08414 NADPH_Ox: Respiratory 82.2 8 0.00017 22.7 6.0 65 21-87 29-96 (100)
113 PF05042 Caleosin: Caleosin re 80.3 13 0.00029 24.0 6.4 58 23-80 97-163 (174)
114 PF10591 SPARC_Ca_bdg: Secrete 78.4 3.5 7.6E-05 24.6 3.1 23 24-46 90-112 (113)
115 KOG4666 Predicted phosphate ac 76.0 10 0.00022 27.3 5.2 62 22-83 259-324 (412)
116 KOG4004 Matricellular protein 75.8 1.3 2.8E-05 29.4 0.8 54 28-82 193-249 (259)
117 KOG2871 Uncharacterized conser 75.2 3 6.4E-05 30.3 2.5 56 23-78 310-369 (449)
118 PF08726 EFhand_Ca_insen: Ca2+ 74.9 5.6 0.00012 21.7 3.0 51 24-79 8-65 (69)
119 KOG4347 GTPase-activating prot 74.8 5.5 0.00012 30.9 3.9 55 22-77 555-612 (671)
120 KOG0169 Phosphoinositide-speci 72.9 32 0.00068 27.4 7.5 61 24-85 174-234 (746)
121 PLN02952 phosphoinositide phos 72.3 13 0.00029 28.7 5.5 51 35-86 13-68 (599)
122 KOG1955 Ral-GTPase effector RA 71.0 5.4 0.00012 30.2 3.0 30 21-50 264-293 (737)
123 KOG0998 Synaptic vesicle prote 67.8 8.2 0.00018 31.1 3.7 70 15-85 122-192 (847)
124 KOG4347 GTPase-activating prot 66.1 16 0.00035 28.5 4.7 31 57-87 557-587 (671)
125 PF08976 DUF1880: Domain of un 65.9 8 0.00017 23.4 2.6 29 54-82 6-34 (118)
126 PLN02228 Phosphoinositide phos 61.8 46 0.00099 25.8 6.4 59 24-84 26-93 (567)
127 PLN02222 phosphoinositide phos 60.8 39 0.00084 26.2 5.9 59 24-84 27-91 (581)
128 PF14164 YqzH: YqzH-like prote 60.0 26 0.00056 18.8 4.0 27 24-50 10-37 (64)
129 PF14513 DAG_kinase_N: Diacylg 59.7 8.7 0.00019 23.9 2.0 17 68-84 45-61 (138)
130 PF08006 DUF1700: Protein of u 58.3 46 0.001 21.2 6.0 50 3-56 4-55 (181)
131 KOG1954 Endocytosis/signaling 56.0 20 0.00044 26.5 3.6 45 36-80 457-502 (532)
132 PF00404 Dockerin_1: Dockerin 54.9 16 0.00035 15.0 2.3 12 34-45 3-14 (21)
133 PF09068 EF-hand_2: EF hand; 54.6 47 0.001 20.2 6.0 65 20-84 39-126 (127)
134 TIGR02787 codY_Gpos GTP-sensin 52.9 74 0.0016 21.9 5.9 41 8-49 168-209 (251)
135 KOG0493 Transcription factor E 51.9 53 0.0011 22.9 4.9 45 13-62 250-295 (342)
136 KOG1265 Phospholipase C [Lipid 50.1 55 0.0012 27.0 5.3 47 40-86 206-252 (1189)
137 PRK08181 transposase; Validate 48.4 37 0.00081 23.4 3.9 48 36-83 4-51 (269)
138 PF09373 PMBR: Pseudomurein-bi 46.3 28 0.00061 15.8 2.2 18 69-86 2-19 (33)
139 KOG1707 Predicted Ras related/ 45.6 34 0.00074 26.6 3.6 34 15-48 188-221 (625)
140 PF01023 S_100: S-100/ICaBP ty 44.9 39 0.00085 16.5 3.9 30 21-50 5-36 (44)
141 KOG0040 Ca2+-binding actin-bun 43.9 71 0.0015 28.2 5.3 54 23-77 2297-2355(2399)
142 PLN02952 phosphoinositide phos 43.2 1.4E+02 0.0029 23.5 6.4 60 23-83 39-110 (599)
143 PF09336 Vps4_C: Vps4 C termin 43.2 46 0.00099 17.5 3.0 29 3-31 33-61 (62)
144 KOG0046 Ca2+-binding actin-bun 42.4 78 0.0017 24.5 4.9 35 19-53 54-88 (627)
145 PLN02230 phosphoinositide phos 40.6 1.6E+02 0.0034 23.1 6.4 60 23-83 30-102 (598)
146 PF09808 SNAPc_SNAP43: Small n 39.6 22 0.00048 23.2 1.7 27 21-52 6-32 (194)
147 PF02761 Cbl_N2: CBL proto-onc 38.1 79 0.0017 18.0 6.0 51 36-86 20-73 (85)
148 cd07313 terB_like_2 tellurium 37.7 63 0.0014 18.3 3.3 14 16-29 16-29 (104)
149 cd08028 LARP_3 La RNA-binding 37.5 45 0.00097 18.8 2.5 42 5-47 4-46 (82)
150 PF05872 DUF853: Bacterial pro 37.4 99 0.0021 23.6 4.8 51 3-53 109-159 (502)
151 KOG1265 Phospholipase C [Lipid 35.5 1.8E+02 0.0039 24.3 6.1 61 24-84 223-300 (1189)
152 cd00086 homeodomain Homeodomai 33.6 66 0.0014 15.8 5.2 43 15-62 6-49 (59)
153 PF00046 Homeobox: Homeobox do 33.5 68 0.0015 15.9 5.2 43 15-62 6-49 (57)
154 PF12091 DUF3567: Protein of u 33.5 96 0.0021 17.7 3.5 29 2-30 47-76 (85)
155 PF03002 Somatostatin: Somatos 33.1 15 0.00033 14.4 0.1 13 95-107 6-18 (18)
156 PF07879 PHB_acc_N: PHB/PHA ac 32.9 53 0.0011 17.7 2.1 21 30-50 11-31 (64)
157 PF12419 DUF3670: SNF2 Helicas 31.8 1.3E+02 0.0028 18.5 4.5 46 35-80 80-138 (141)
158 PF10891 DUF2719: Protein of u 31.7 54 0.0012 18.4 2.1 19 68-86 32-50 (81)
159 PF03979 Sigma70_r1_1: Sigma-7 31.7 60 0.0013 17.9 2.4 32 35-66 18-50 (82)
160 PLN02223 phosphoinositide phos 31.5 2E+02 0.0044 22.2 5.7 61 24-85 18-94 (537)
161 cd08326 CARD_CASP9 Caspase act 29.8 1.1E+02 0.0024 17.2 3.6 48 35-84 27-74 (84)
162 cd07909 YciF YciF bacterial st 28.8 1.5E+02 0.0032 18.6 4.0 36 3-39 32-67 (147)
163 PF13026 DUF3887: Protein of u 28.7 1.3E+02 0.0028 17.7 3.7 54 3-59 5-62 (101)
164 COG4709 Predicted membrane pro 28.7 1.8E+02 0.0039 19.3 4.9 51 3-56 4-55 (195)
165 PF12976 DUF3860: Domain of Un 28.2 1.2E+02 0.0026 17.0 5.0 45 1-49 1-46 (92)
166 cd08324 CARD_NOD1_CARD4 Caspas 27.3 1.3E+02 0.0028 17.2 4.6 49 35-85 26-74 (85)
167 PRK15117 ABC transporter perip 26.3 1.1E+02 0.0023 20.4 3.2 23 8-30 77-99 (211)
168 PF01325 Fe_dep_repress: Iron 25.9 1.1E+02 0.0024 15.9 3.3 46 16-65 2-47 (60)
169 KOG0506 Glutaminase (contains 25.6 2.3E+02 0.0051 21.8 5.0 81 27-107 91-190 (622)
170 TIGR03481 HpnM hopanoid biosyn 25.6 1.2E+02 0.0025 20.0 3.3 23 8-30 73-95 (198)
171 PF13720 Acetyltransf_11: Udp 24.4 1.4E+02 0.003 16.6 4.3 50 14-66 26-76 (83)
172 TIGR01565 homeo_ZF_HD homeobox 24.1 1.2E+02 0.0026 15.8 4.5 35 15-54 7-45 (58)
173 PF08355 EF_assoc_1: EF hand a 24.0 86 0.0019 17.3 2.1 22 64-85 11-32 (76)
174 PRK09430 djlA Dna-J like membr 23.6 2.3E+02 0.005 19.5 4.6 53 34-86 67-123 (267)
175 PF12174 RST: RCD1-SRO-TAF4 (R 23.4 1.4E+02 0.003 16.2 3.5 35 14-51 20-54 (70)
176 PF05383 La: La domain; Inter 23.3 1.1E+02 0.0024 16.0 2.4 21 27-47 20-40 (61)
177 PF09832 DUF2059: Uncharacteri 22.8 1.3E+02 0.0027 15.5 4.0 27 3-29 3-30 (64)
178 PF09851 SHOCT: Short C-termin 22.5 92 0.002 13.8 3.5 12 36-47 14-25 (31)
179 KOG0488 Transcription factor B 22.3 2.4E+02 0.0053 20.0 4.5 44 15-63 178-222 (309)
180 cd08032 LARP_7 La RNA-binding 22.3 1.6E+02 0.0035 16.5 3.9 32 16-47 17-48 (82)
181 PRK04158 transcriptional repre 22.1 2.8E+02 0.0061 19.3 5.3 30 5-34 168-198 (256)
182 KOG0843 Transcription factor E 21.8 2.5E+02 0.0054 18.6 4.4 44 15-63 108-152 (197)
183 COG5562 Phage envelope protein 21.7 72 0.0016 19.9 1.6 27 59-85 76-102 (137)
184 PF07308 DUF1456: Protein of u 21.4 1.5E+02 0.0033 15.9 4.4 12 39-50 30-41 (68)
185 cd08318 Death_NMPP84 Death dom 21.0 1.7E+02 0.0037 16.3 3.1 14 40-53 65-78 (86)
186 PF02758 PYRIN: PAAD/DAPIN/Pyr 20.6 1.7E+02 0.0037 16.1 4.0 39 8-46 4-42 (83)
187 PF12486 DUF3702: ImpA domain 20.6 1.9E+02 0.0041 18.3 3.4 29 22-50 69-97 (148)
188 PLN02230 phosphoinositide phos 20.2 1.7E+02 0.0037 23.0 3.6 34 53-87 27-60 (598)
189 PF07499 RuvA_C: RuvA, C-termi 20.2 1.3E+02 0.0028 14.6 3.1 24 42-65 4-28 (47)
No 1
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.40 E-value=3.2e-12 Score=73.57 Aligned_cols=67 Identities=21% Similarity=0.343 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhcCC-CCCCceeHHHHHHHHhc-cCC---c-HHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 19 EVQNLAKNFFNSMDT-NGDGRISRSEFLQFLGK-FNN---T-QWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 19 ~~~~~~~~~F~~~d~-~~~G~i~~~el~~~l~~-~~~---~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
..+..+..+|+.||+ +++|+|+..||+.++.. ++. . ..++.++..+|.++||+|+|+||+.++..+.
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 456678999999999 99999999999999998 765 4 6789999999999999999999999998774
No 2
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.39 E-value=3.8e-12 Score=69.16 Aligned_cols=59 Identities=34% Similarity=0.642 Sum_probs=52.1
Q ss_pred HHHHHHhhcCCCCCCceeHHHHHHHHhccCC-------cHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 044607 23 LAKNFFNSMDTNGDGRISRSEFLQFLGKFNN-------TQWIQELFQSIDQNGDGSLDFVEFLTPF 81 (110)
Q Consensus 23 ~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 81 (110)
+++.+|+.+|++++|.|+.+|+..++..++. ...++.++..+|.+++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3678999999999999999999999999886 2345677999999999999999999764
No 3
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.34 E-value=1.4e-11 Score=71.83 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=64.7
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC-cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 16 ATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN-TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 16 ~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
++++++..+..+|..+|++++|.|+.+++..+++..+. ...++.++..++.+++|.|++++|+.++..+..
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999998877 567889999999999999999999999887765
No 4
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.30 E-value=3.1e-11 Score=69.42 Aligned_cols=67 Identities=21% Similarity=0.514 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhcC-CCCCC-ceeHHHHHHHHhc-----cCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 19 EVQNLAKNFFNSMD-TNGDG-RISRSEFLQFLGK-----FNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 19 ~~~~~~~~~F~~~d-~~~~G-~i~~~el~~~l~~-----~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
..+..+..+|+.+| ++++| .|+..+|+.+++. ++. +..++.++..+|.+++|+|+|++|+.++..+.
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 34567899999998 89999 5999999999998 665 45688999999999999999999999887663
No 5
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.28 E-value=3.4e-11 Score=75.51 Aligned_cols=81 Identities=30% Similarity=0.427 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhhcCHH--HHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHH
Q 044607 3 QEFHDSAIICYNNATGE--VQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEF 77 (110)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef 77 (110)
++|...+.+........ ...+++++|+.+|++++|+|+..||+.++..++. ...++.++...|.+++|.|+|.+|
T Consensus 64 ~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef 143 (151)
T KOG0027|consen 64 EEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEF 143 (151)
T ss_pred HHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHH
Confidence 45666665554433332 3557999999999999999999999999999998 456789999999999999999999
Q ss_pred HHHHHh
Q 044607 78 LTPFYF 83 (110)
Q Consensus 78 ~~~~~~ 83 (110)
+.++..
T Consensus 144 ~~~m~~ 149 (151)
T KOG0027|consen 144 VKMMSG 149 (151)
T ss_pred HHHHhc
Confidence 988763
No 6
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.28 E-value=5.9e-11 Score=74.76 Aligned_cols=79 Identities=23% Similarity=0.390 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHH
Q 044607 3 QEFHDSAIICYNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLT 79 (110)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~ 79 (110)
++|..++......... .+++..+|+.||.|++|+|+..++..++..++. ...++.+++.++.+++|.|++++|+.
T Consensus 75 ~~Fl~~ms~~~~~~~~--~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~ 152 (160)
T COG5126 75 PEFLTVMSVKLKRGDK--EEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKK 152 (160)
T ss_pred HHHHHHHHHHhccCCc--HHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHH
Confidence 4566666555543332 334889999999999999999999999999888 56788999999999999999999998
Q ss_pred HHHh
Q 044607 80 PFYF 83 (110)
Q Consensus 80 ~~~~ 83 (110)
.+..
T Consensus 153 ~~~~ 156 (160)
T COG5126 153 LIKD 156 (160)
T ss_pred HHhc
Confidence 7653
No 7
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.26 E-value=4.5e-11 Score=75.28 Aligned_cols=73 Identities=32% Similarity=0.463 Sum_probs=65.4
Q ss_pred HhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 13 YNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 13 ~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
...++++++.+++++|+.+|++++|.|+..+|..+++.+|. ...+.+++..++. +.+.|+|.+|+.+++....
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~ 86 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK 86 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc
Confidence 45689999999999999999999999999999999998888 4567789999988 8899999999999987765
No 8
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.19 E-value=9.8e-11 Score=63.46 Aligned_cols=60 Identities=33% Similarity=0.543 Sum_probs=54.3
Q ss_pred HHHHhhcCCCCCCceeHHHHHHHHhccCC-cHHHHHHHHhcCCCCCCceeHHHHHHHHHhh
Q 044607 25 KNFFNSMDTNGDGRISRSEFLQFLGKFNN-TQWIQELFQSIDQNGDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 25 ~~~F~~~d~~~~G~i~~~el~~~l~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 84 (110)
+.+|..+|++++|.|+.+|+..++...+. ...++.++..++.+++|.|++.+|+.++..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 56899999999999999999999998887 5567899999999999999999999988765
No 9
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.19 E-value=2.2e-10 Score=66.47 Aligned_cols=67 Identities=19% Similarity=0.450 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhcC-CCCCC-ceeHHHHHHHHhc-cC----C---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 19 EVQNLAKNFFNSMD-TNGDG-RISRSEFLQFLGK-FN----N---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 19 ~~~~~~~~~F~~~d-~~~~G-~i~~~el~~~l~~-~~----~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
..+..+..+|+.+| +|++| .|+..||+.++.. ++ . ...++.++..+|.+++|.|+|+||+.++..+.
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 34566888999999 78998 5999999999965 21 1 34688999999999999999999999998773
No 10
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.17 E-value=2.9e-10 Score=71.34 Aligned_cols=71 Identities=31% Similarity=0.491 Sum_probs=64.0
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 16 ATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 16 ~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
.+.++...++.+|+.+|++++|.|+..++..+++.++. ...+..++...|.+++|.|++.+|+.++.....
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 45677888999999999999999999999999999999 345778999999999999999999999987654
No 11
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.14 E-value=3.3e-10 Score=64.90 Aligned_cols=69 Identities=20% Similarity=0.377 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhcCC--CCCCceeHHHHHHHHhc-cCC-------cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 18 GEVQNLAKNFFNSMDT--NGDGRISRSEFLQFLGK-FNN-------TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 18 ~~~~~~~~~~F~~~d~--~~~G~i~~~el~~~l~~-~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
+++++.++.+|..+|+ +++|.|+.+++..+++. ++. ...++.++..++.+++|.|+|++|+.++..+..
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 4567889999999999 89999999999999975 332 456889999999999999999999999887644
No 12
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.13 E-value=5.8e-10 Score=64.77 Aligned_cols=66 Identities=24% Similarity=0.419 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhcCC-CC-CCceeHHHHHHHHhc-----cCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 20 VQNLAKNFFNSMDT-NG-DGRISRSEFLQFLGK-----FNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 20 ~~~~~~~~F~~~d~-~~-~G~i~~~el~~~l~~-----~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
....+..+|..+|. ++ +|.|+..|+..+++. ++. ...++.++..+|.+++|.|+|++|+.++....
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 45668899999997 97 799999999999875 233 45688999999999999999999998887553
No 13
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.12 E-value=7.7e-10 Score=63.59 Aligned_cols=67 Identities=21% Similarity=0.406 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhcCC-CC-CCceeHHHHHHHHhc---cCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 19 EVQNLAKNFFNSMDT-NG-DGRISRSEFLQFLGK---FNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 19 ~~~~~~~~~F~~~d~-~~-~G~i~~~el~~~l~~---~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
+.+..+..+|..++. ++ +|+|+.+||..++.. ++. ..++.++++.+|.+++|+|+|+||+.++..+.
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 445667889999997 77 899999999999963 454 56788999999999999999999999988774
No 14
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.12 E-value=7.9e-10 Score=63.92 Aligned_cols=66 Identities=24% Similarity=0.510 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhcC-CCCCCc-eeHHHHHHHHhc-cCC-------cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 20 VQNLAKNFFNSMD-TNGDGR-ISRSEFLQFLGK-FNN-------TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 20 ~~~~~~~~F~~~d-~~~~G~-i~~~el~~~l~~-~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
....+..+|..+| ++++|. |+..|+..+++. ++. ...++.++..+|.+++|.|+|++|+.++..+.
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 3456899999997 999995 999999999975 432 45688999999999999999999999888764
No 15
>PTZ00183 centrin; Provisional
Probab=99.08 E-value=1.1e-09 Score=68.40 Aligned_cols=72 Identities=24% Similarity=0.413 Sum_probs=63.1
Q ss_pred HhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhh
Q 044607 13 YNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 13 ~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 84 (110)
...+++++++++..+|..+|++++|.|+..+|..++..++. ...++.++..+|.+++|.|++.+|+.++...
T Consensus 8 ~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 8 RPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82 (158)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 34678889999999999999999999999999999998775 4457789999999999999999999887654
No 16
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.06 E-value=2.2e-09 Score=61.85 Aligned_cols=67 Identities=27% Similarity=0.466 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhh-cCCCCCC-ceeHHHHHHHHhccCC--------cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 19 EVQNLAKNFFNS-MDTNGDG-RISRSEFLQFLGKFNN--------TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 19 ~~~~~~~~~F~~-~d~~~~G-~i~~~el~~~l~~~~~--------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
..+..+..+|.. +|++++| .|+.+||+.++..... +..++.++..+|.++||.|+|+||+.++..+.
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 456678889998 7888876 9999999999987521 35688999999999999999999999988773
No 17
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.01 E-value=2.7e-09 Score=64.26 Aligned_cols=63 Identities=29% Similarity=0.400 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCCcHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 044607 18 GEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNNTQWIQELFQSIDQNGDGSLDFVEFLTPF 81 (110)
Q Consensus 18 ~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 81 (110)
+.....+.-+|..+|+|+||.|+.+|+..+. .......+..+|..+|.++||.|+++||...+
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~-l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR-LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH-ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4566778889999999999999999999876 22224557789999999999999999999988
No 18
>PTZ00184 calmodulin; Provisional
Probab=98.96 E-value=6.7e-09 Score=64.06 Aligned_cols=70 Identities=29% Similarity=0.471 Sum_probs=57.8
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhh
Q 044607 15 NATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 15 ~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 84 (110)
.+++++.+.+...|..+|++++|.|+.++|..++..++. ...+..++..++.+++|.|++++|+.++...
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 356777888889999999999999999999988887665 3456788888999999999999998877644
No 19
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.96 E-value=6.2e-09 Score=67.42 Aligned_cols=79 Identities=28% Similarity=0.390 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---c-------HHHHHHHHhcCCCCCCcee
Q 044607 4 EFHDSAIICYNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---T-------QWIQELFQSIDQNGDGSLD 73 (110)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~-------~~~~~~~~~~d~~~~g~i~ 73 (110)
+|.+.+..+....+.+ ..++-+|+.+|.+++|.|+.+|+..++..+.. . ..++.++..+|.++||+|+
T Consensus 88 ~Fv~~ls~f~~~~~~~--~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~Is 165 (187)
T KOG0034|consen 88 EFVRLLSVFSPKASKR--EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKIS 165 (187)
T ss_pred HHHHHHhhhcCCccHH--HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCc
Confidence 4444444444433333 45888999999999999999999999887655 1 1245788899999999999
Q ss_pred HHHHHHHHHhh
Q 044607 74 FVEFLTPFYFV 84 (110)
Q Consensus 74 ~~ef~~~~~~~ 84 (110)
|+||..++...
T Consensus 166 feEf~~~v~~~ 176 (187)
T KOG0034|consen 166 FEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHcC
Confidence 99999988754
No 20
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.92 E-value=9.8e-09 Score=53.80 Aligned_cols=58 Identities=34% Similarity=0.645 Sum_probs=51.2
Q ss_pred HHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 044607 24 AKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPF 81 (110)
Q Consensus 24 ~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 81 (110)
+..+|..+|++++|.|+.+++..++..++. ...+..++..++.+++|.|++.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 567899999999999999999999998866 4557789999999999999999998764
No 21
>PTZ00184 calmodulin; Provisional
Probab=98.91 E-value=2.3e-08 Score=61.63 Aligned_cols=59 Identities=25% Similarity=0.542 Sum_probs=36.1
Q ss_pred HHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 044607 23 LAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPF 81 (110)
Q Consensus 23 ~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 81 (110)
.+..+|..+|++++|.|+..++..++..++. ...++.++..+|.+++|.|+++||+.++
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 3555666666666666666666666655543 3345556666666666666666666554
No 22
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.89 E-value=1.3e-08 Score=66.06 Aligned_cols=82 Identities=23% Similarity=0.317 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHH
Q 044607 3 QEFHDSAIICYNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLT 79 (110)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~ 79 (110)
++|++++....+...+... ...+|+.+|.+++|.|+..||..++..... ...+.+.|+.+|.+++|.|+..|++.
T Consensus 47 ~~F~~i~~~~fp~gd~~~y--~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~ 124 (193)
T KOG0044|consen 47 EEFREIYASFFPDGDASKY--AELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLK 124 (193)
T ss_pred HHHHHHHHHHCCCCCHHHH--HHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHH
Confidence 5688888877776655555 556999999999999999999988876655 44566889999999999999999999
Q ss_pred HHHhhhc
Q 044607 80 PFYFVSN 86 (110)
Q Consensus 80 ~~~~~~~ 86 (110)
++..+-.
T Consensus 125 iv~~i~~ 131 (193)
T KOG0044|consen 125 IVQAIYQ 131 (193)
T ss_pred HHHHHHH
Confidence 9887765
No 23
>PTZ00183 centrin; Provisional
Probab=98.89 E-value=2.5e-08 Score=62.25 Aligned_cols=60 Identities=23% Similarity=0.373 Sum_probs=36.9
Q ss_pred HHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 044607 23 LAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFY 82 (110)
Q Consensus 23 ~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 82 (110)
.+..+|..+|++++|.|+..+|..++..++. ...++.++..++.+++|.|++++|..++.
T Consensus 91 ~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 91 EILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 3555666666666666666666666665543 33455666666666666666666665554
No 24
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.88 E-value=1.2e-08 Score=66.11 Aligned_cols=79 Identities=24% Similarity=0.377 Sum_probs=70.8
Q ss_pred hhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCCcH---HHHHHHHhcCCCCCCceeHHHHHHHHHhhhccccc
Q 044607 14 NNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNNTQ---WIQELFQSIDQNGDGSLDFVEFLTPFYFVSNWRVK 90 (110)
Q Consensus 14 ~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~~---~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 90 (110)
+.++..+++.+..+|..+|.+.||+|+..|++.++.++|-+. -++.++...|.|.+|+|+|-||+-++.....+.+.
T Consensus 91 ~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~ 170 (244)
T KOG0041|consen 91 SEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQ 170 (244)
T ss_pred hHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccc
Confidence 457778889999999999999999999999999999999844 36789999999999999999999999988887777
Q ss_pred cC
Q 044607 91 CD 92 (110)
Q Consensus 91 ~~ 92 (110)
++
T Consensus 171 ~d 172 (244)
T KOG0041|consen 171 ED 172 (244)
T ss_pred cc
Confidence 76
No 25
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.83 E-value=2.4e-08 Score=65.31 Aligned_cols=67 Identities=27% Similarity=0.426 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 20 VQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 20 ~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
-+..|+.+|+.+|+|++|.|+.+||+.++..+|. +...+.+++.+|..++|.|.|++|+.++..+..
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~ 191 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR 191 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHH
Confidence 3566888999999999999999999999999999 344668999999888999999999999887765
No 26
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.79 E-value=2.2e-08 Score=61.39 Aligned_cols=74 Identities=24% Similarity=0.297 Sum_probs=62.4
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCCcH---HHHHHHHhcCCC--CCCceeHHHHHHHHHhhhccc
Q 044607 15 NATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNNTQ---WIQELFQSIDQN--GDGSLDFVEFLTPFYFVSNWR 88 (110)
Q Consensus 15 ~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~~---~~~~~~~~~d~~--~~g~i~~~ef~~~~~~~~~~~ 88 (110)
.+++++..+++.+|..||..+||.|+.++..++++.+|.+| ++.+.+..++.+ +-.+|+|++|+.++..+.+.+
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 35678889999999999999999999999999999999954 455666666655 457899999999999888753
No 27
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.76 E-value=5.9e-08 Score=50.51 Aligned_cols=49 Identities=35% Similarity=0.633 Sum_probs=42.5
Q ss_pred CCCceeHHHHHHHHhccCC----cHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 044607 35 GDGRISRSEFLQFLGKFNN----TQWIQELFQSIDQNGDGSLDFVEFLTPFYF 83 (110)
Q Consensus 35 ~~G~i~~~el~~~l~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 83 (110)
.+|.|+.++|..++..++. ..+++.++..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 3799999999999977654 456889999999999999999999988763
No 28
>PF14658 EF-hand_9: EF-hand domain
Probab=98.71 E-value=1e-07 Score=51.51 Aligned_cols=57 Identities=28% Similarity=0.545 Sum_probs=51.3
Q ss_pred HHhhcCCCCCCceeHHHHHHHHhccCC----cHHHHHHHHhcCCCCC-CceeHHHHHHHHHh
Q 044607 27 FFNSMDTNGDGRISRSEFLQFLGKFNN----TQWIQELFQSIDQNGD-GSLDFVEFLTPFYF 83 (110)
Q Consensus 27 ~F~~~d~~~~G~i~~~el~~~l~~~~~----~~~~~~~~~~~d~~~~-g~i~~~ef~~~~~~ 83 (110)
.|+.||+++.|.|....+...++..+. ...++.+.+.+|+++. |.|+++.|+.++..
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 699999999999999999999998877 3457799999999888 99999999998875
No 29
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=2.2e-07 Score=58.25 Aligned_cols=80 Identities=18% Similarity=0.363 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHH
Q 044607 3 QEFHDSAIICYNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLT 79 (110)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~ 79 (110)
++|+..+....... +..++++.+|+.+|-|++|.|+..+|..+-..+|. ..++++++..+|.+++|.|+-+||..
T Consensus 89 e~f~~~mt~k~~e~--dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~ 166 (172)
T KOG0028|consen 89 EDFRRVMTVKLGER--DTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIR 166 (172)
T ss_pred HHHHHHHHHHHhcc--CcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHH
Confidence 34555444443222 14455899999999999999999999999999998 56788999999999999999999998
Q ss_pred HHHhh
Q 044607 80 PFYFV 84 (110)
Q Consensus 80 ~~~~~ 84 (110)
++...
T Consensus 167 imk~t 171 (172)
T KOG0028|consen 167 IMKKT 171 (172)
T ss_pred HHhcC
Confidence 87653
No 30
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.70 E-value=1.4e-07 Score=54.10 Aligned_cols=66 Identities=27% Similarity=0.455 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhcCCC--CCCceeHHHHHHHHh-ccCC-------cHHHHHHHHhcCCCCCCceeHHHHHHHHHhh
Q 044607 19 EVQNLAKNFFNSMDTN--GDGRISRSEFLQFLG-KFNN-------TQWIQELFQSIDQNGDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 19 ~~~~~~~~~F~~~d~~--~~G~i~~~el~~~l~-~~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 84 (110)
..+..+...|..++.. .+|.|+..||..++. .++. ...++.++..+|.+++|.|+|++|+.++..+
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3456677889998865 489999999999996 3332 3568899999999999999999999988866
No 31
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.67 E-value=1.8e-07 Score=55.28 Aligned_cols=70 Identities=26% Similarity=0.436 Sum_probs=59.8
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC-cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 15 NATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN-TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 15 ~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
.+++++...+..+|+..++ .+|.|+..+...++...++ ...+..++...|.+++|+++++||+-.+..+.
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 4567788889999999986 5799999999999999999 56788999999999999999999998877653
No 32
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=2.1e-07 Score=58.35 Aligned_cols=71 Identities=21% Similarity=0.319 Sum_probs=62.1
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 15 NATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 15 ~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
..++++...++..|..||++++|+|+.+||..+.+.+|. ..++.+++..+|.++.|.|+|++|+..++..-
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~ 99 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKL 99 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHH
Confidence 466777788999999999999999999999999999998 34567899999999999999999998876544
No 33
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.64 E-value=3.1e-07 Score=52.86 Aligned_cols=65 Identities=12% Similarity=0.228 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC--------cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 20 VQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN--------TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 20 ~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~--------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
.+..+...|..+.. +.+.++..||+.++..--. +..++.++..+|.++||.|+|.||+.++..+.
T Consensus 6 ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 6 SMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 45567778888874 3568999999998854221 45688999999999999999999999998874
No 34
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.62 E-value=7.6e-08 Score=44.03 Aligned_cols=27 Identities=37% Similarity=0.685 Sum_probs=19.2
Q ss_pred HHHHHhhcCCCCCCceeHHHHHHHHhc
Q 044607 24 AKNFFNSMDTNGDGRISRSEFLQFLGK 50 (110)
Q Consensus 24 ~~~~F~~~d~~~~G~i~~~el~~~l~~ 50 (110)
++.+|+.+|+|++|.|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 566777777777777777777776654
No 35
>PLN02964 phosphatidylserine decarboxylase
Probab=98.57 E-value=7.2e-07 Score=67.11 Aligned_cols=69 Identities=28% Similarity=0.461 Sum_probs=58.3
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhh
Q 044607 16 ATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 16 ~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 84 (110)
.++.+...+..+|..+|++++|.|+.+||..++..++. ..++..+|+.+|.+++|.|+++|+..++...
T Consensus 173 pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 173 PVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 44455556888999999999999999999999887764 4567899999999999999999999998874
No 36
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.54 E-value=6.6e-07 Score=54.95 Aligned_cols=79 Identities=16% Similarity=0.288 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHH
Q 044607 3 QEFHDSAIICYNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLT 79 (110)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~ 79 (110)
|+|...+......-.....+.+....++||++++|.|...+++-++..+|. ..+++.++.-.. |.+|.|+|+.|+.
T Consensus 69 E~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk 147 (152)
T KOG0030|consen 69 EEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVK 147 (152)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHH
Confidence 445555555544444455666888999999999999999999999999998 455666666554 7789999999997
Q ss_pred HHH
Q 044607 80 PFY 82 (110)
Q Consensus 80 ~~~ 82 (110)
.+.
T Consensus 148 ~i~ 150 (152)
T KOG0030|consen 148 HIM 150 (152)
T ss_pred HHh
Confidence 653
No 37
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.51 E-value=6.1e-07 Score=56.01 Aligned_cols=66 Identities=24% Similarity=0.363 Sum_probs=50.4
Q ss_pred hhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCCc---HHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 044607 14 NNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNNT---QWIQELFQSIDQNGDGSLDFVEFLTPFYF 83 (110)
Q Consensus 14 ~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~---~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 83 (110)
.-++..++.+++.+|..+|.|+||.|+++++++++.++|.. .+++.++. ..+|.|+|.-|+.++..
T Consensus 24 amf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~----Ea~gPINft~FLTmfGe 92 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMK----EAPGPINFTVFLTMFGE 92 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH----hCCCCeeHHHHHHHHHH
Confidence 44777899999999999999999999999999999999882 23333333 34566777766666553
No 38
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.50 E-value=9.3e-07 Score=63.21 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=55.9
Q ss_pred HHHHHHHHHHh--hcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCCcHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 044607 4 EFHDSAIICYN--NATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNNTQWIQELFQSIDQNGDGSLDFVEFLTPF 81 (110)
Q Consensus 4 ~~~~~~~~~~~--~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 81 (110)
+|.+.+...+. ...+.....+..+|+.+|++++|.|+.+||.. .+.+|..+|.+++|.|+++||...+
T Consensus 314 ~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~----------~~~~F~~~D~d~DG~Is~eEf~~~~ 383 (391)
T PRK12309 314 TLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG----------SDAVFDALDLNHDGKITPEEMRAGL 383 (391)
T ss_pred HHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH----------HHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 34444444433 34445567788899999999999999999842 4679999999999999999999988
Q ss_pred Hhhh
Q 044607 82 YFVS 85 (110)
Q Consensus 82 ~~~~ 85 (110)
....
T Consensus 384 ~~~~ 387 (391)
T PRK12309 384 GAAL 387 (391)
T ss_pred HHHH
Confidence 7653
No 39
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.50 E-value=8.3e-07 Score=71.09 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=71.1
Q ss_pred HhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC----------cHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 044607 13 YNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN----------TQWIQELFQSIDQNGDGSLDFVEFLTPFY 82 (110)
Q Consensus 13 ~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~----------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 82 (110)
..+.+++++.++.-+|.+||++.+|.++..+|..+++.+|+ .|+.++++...|++.+|+|+..+|+.++.
T Consensus 2244 ~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2244 HNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred cCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHH
Confidence 56799999999999999999999999999999999999998 34678999999999999999999999998
Q ss_pred hhhccccccC
Q 044607 83 FVSNWRVKCD 92 (110)
Q Consensus 83 ~~~~~~~~~~ 92 (110)
.-...++..+
T Consensus 2324 ~~ETeNI~s~ 2333 (2399)
T KOG0040|consen 2324 SKETENILSS 2333 (2399)
T ss_pred hcccccccch
Confidence 7766554444
No 40
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.49 E-value=2.8e-06 Score=53.12 Aligned_cols=76 Identities=18% Similarity=0.310 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 044607 5 FHDSAIICYNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPF 81 (110)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 81 (110)
|+......+....++.. +..+|..||+++.|.|..+.++.+|...|- +.+|+.+++.+-.+..|.++|..|+.++
T Consensus 86 FLTmfGekL~gtdpe~~--I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~i 163 (171)
T KOG0031|consen 86 FLTMFGEKLNGTDPEEV--ILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYII 163 (171)
T ss_pred HHHHHHHHhcCCCHHHH--HHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHH
Confidence 44445555555555443 888999999999999999999999998887 6789999999999999999999999887
Q ss_pred H
Q 044607 82 Y 82 (110)
Q Consensus 82 ~ 82 (110)
.
T Consensus 164 t 164 (171)
T KOG0031|consen 164 T 164 (171)
T ss_pred H
Confidence 6
No 41
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.43 E-value=4.5e-07 Score=41.97 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=24.5
Q ss_pred HHHHHHhhcCCCCCCceeHHHHHHHHh-ccC
Q 044607 23 LAKNFFNSMDTNGDGRISRSEFLQFLG-KFN 52 (110)
Q Consensus 23 ~~~~~F~~~d~~~~G~i~~~el~~~l~-~~~ 52 (110)
+++.+|..+|++++|.|+.+||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367889999999999999999999888 454
No 42
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.41 E-value=6.9e-07 Score=40.80 Aligned_cols=29 Identities=34% Similarity=0.634 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCCCCceeHHHHHHHHHhh
Q 044607 56 WIQELFQSIDQNGDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 56 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 84 (110)
+++.+|+.+|.|+||.|+++||..++..+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 35789999999999999999999998754
No 43
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.37 E-value=2e-06 Score=56.41 Aligned_cols=66 Identities=21% Similarity=0.362 Sum_probs=53.7
Q ss_pred HHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC----cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 21 QNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN----TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 21 ~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
...+...|+..|+|+.|.|+-+|++.++..... ..+++.++..+|.+.+|+|.++||..+|+.+..
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~ 125 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQ 125 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Confidence 345777888999999999999999988774444 556778888889999999999999988887765
No 44
>PLN02964 phosphatidylserine decarboxylase
Probab=98.33 E-value=3.6e-06 Score=63.49 Aligned_cols=69 Identities=14% Similarity=0.232 Sum_probs=58.6
Q ss_pred HhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC----cH---HHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 13 YNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN----TQ---WIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 13 ~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~----~~---~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
+..+...+.++++++|..+|++++|.+ +..+++.++. .. .++.+|..+|.+++|.|+++||+.++..+.
T Consensus 134 ~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg 209 (644)
T PLN02964 134 LFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG 209 (644)
T ss_pred HhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc
Confidence 356788888999999999999999997 7777887772 22 267899999999999999999999998764
No 45
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.28 E-value=3.7e-06 Score=54.74 Aligned_cols=75 Identities=20% Similarity=0.487 Sum_probs=59.3
Q ss_pred hcCHHHHHHHHHHHhhcCCCC-CCceeHHHHHHHHhccCC----cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhcccc
Q 044607 15 NATGEVQNLAKNFFNSMDTNG-DGRISRSEFLQFLGKFNN----TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSNWRV 89 (110)
Q Consensus 15 ~~~~~~~~~~~~~F~~~d~~~-~G~i~~~el~~~l~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 89 (110)
.+++.+ ++.+|+.|=.+. +|.++.++|+.++.+..+ ....+.+|+.+|.+++|.|+|.||+..++.+.+|.+
T Consensus 22 ~f~~~e---i~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~ 98 (193)
T KOG0044|consen 22 KFSKKE---IQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTL 98 (193)
T ss_pred CCCHHH---HHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcH
Confidence 355555 566666655554 899999999999998887 234668999999999999999999999999888665
Q ss_pred ccC
Q 044607 90 KCD 92 (110)
Q Consensus 90 ~~~ 92 (110)
...
T Consensus 99 eek 101 (193)
T KOG0044|consen 99 EEK 101 (193)
T ss_pred HHH
Confidence 443
No 46
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.24 E-value=7.4e-06 Score=53.20 Aligned_cols=70 Identities=24% Similarity=0.463 Sum_probs=59.8
Q ss_pred cCHHHHHHHHHHHhhcCCC-CCCceeHHHHHHHHhccCCcHHHHHHHHhcCCCCCCc-eeHHHHHHHHHhhhc
Q 044607 16 ATGEVQNLAKNFFNSMDTN-GDGRISRSEFLQFLGKFNNTQWIQELFQSIDQNGDGS-LDFVEFLTPFYFVSN 86 (110)
Q Consensus 16 ~~~~~~~~~~~~F~~~d~~-~~G~i~~~el~~~l~~~~~~~~~~~~~~~~d~~~~g~-i~~~ef~~~~~~~~~ 86 (110)
++..++..+...|..++++ ++|+++.++|..+. .+..++....+++.++.+++|. |+|++|+..++....
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~ 98 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSP 98 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcC
Confidence 7888999999999999998 99999999999888 4555777788999988887787 999999988886654
No 47
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.22 E-value=7.4e-06 Score=59.05 Aligned_cols=65 Identities=34% Similarity=0.508 Sum_probs=55.7
Q ss_pred HHHHHHHhhcCCCCCCceeHHHHHHHHhccCC-------cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 22 NLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN-------TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 22 ~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
..+..+|+.+|.|+.|.|+.+||..+++-++. .+.+.++-+.+|.++||.|++.||+..+.....
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDR 618 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcc
Confidence 44677999999999999999999999886655 445667888899999999999999999887655
No 48
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.17 E-value=4e-06 Score=36.91 Aligned_cols=23 Identities=48% Similarity=0.845 Sum_probs=16.9
Q ss_pred HHHHhhcCCCCCCceeHHHHHHH
Q 044607 25 KNFFNSMDTNGDGRISRSEFLQF 47 (110)
Q Consensus 25 ~~~F~~~d~~~~G~i~~~el~~~ 47 (110)
+++|+.+|.|++|.|+.+|+..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45777777777777777777764
No 49
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.15 E-value=1.5e-05 Score=49.64 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=53.6
Q ss_pred hhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC----cHH----HHHHHHhcCCCCCCceeHHHHHHHHHhh
Q 044607 14 NNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN----TQW----IQELFQSIDQNGDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 14 ~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~----~~~----~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 84 (110)
.+..+.+++.. -+|..+|-|+++.|...++...+..+-. ..+ .++++...|.++||++++.+|-.++..-
T Consensus 101 sE~APrdlK~~-YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 101 SEMAPRDLKAK-YAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HhhChHHhhhh-heeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 33444443333 3899999999999999999988877655 222 4588999999999999999999887643
No 50
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.11 E-value=2.3e-05 Score=55.92 Aligned_cols=71 Identities=23% Similarity=0.389 Sum_probs=59.4
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCCc----HHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 15 NATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNNT----QWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 15 ~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~----~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
+..++...+++..|+.+|.+++|.++..++...+..+..+ .....++..+|.+.+|+|+|.||...+..-.
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E 81 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKE 81 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhH
Confidence 3456667789999999999999999999999888777663 3455899999999999999999998877544
No 51
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.10 E-value=2.1e-05 Score=57.62 Aligned_cols=73 Identities=23% Similarity=0.345 Sum_probs=63.8
Q ss_pred HhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC------cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 13 YNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN------TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 13 ~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
...++.+++.+++..|...| +++|+|+..++..++.+.+. .++++.++...+.+.+|+|+|++|+..+-.+..
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 45688999999999999999 99999999999999988776 456788999999999999999999996655543
No 52
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.02 E-value=3.9e-05 Score=54.80 Aligned_cols=65 Identities=20% Similarity=0.426 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhh
Q 044607 20 VQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 20 ~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 84 (110)
...++..+|+..|.+.||.|+.+|+...++.++. ...++++++.+|.++++.|+++||..++...
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC
Confidence 3455778999999999999999999999999998 4567789999999999999999998876544
No 53
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.99 E-value=1.1e-05 Score=48.43 Aligned_cols=60 Identities=25% Similarity=0.393 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC-cHHHHHHHHhcCCCCCCceeHHHHHH
Q 044607 20 VQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN-TQWIQELFQSIDQNGDGSLDFVEFLT 79 (110)
Q Consensus 20 ~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~ 79 (110)
....+.-.|..+|.++||.++.+|+..+...+.. ..=+..++...|.++|+.|+..|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3344555799999999999999999987664433 33367899999999999999999974
No 54
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.95 E-value=4.1e-05 Score=39.56 Aligned_cols=44 Identities=30% Similarity=0.458 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhh-cCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHh
Q 044607 3 QEFHDSAIICYNN-ATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLG 49 (110)
Q Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~ 49 (110)
++|+.++...-.. +++++ +..+|..+|++++|.|+..||..++.
T Consensus 8 ~~~~~~l~~~g~~~~s~~e---~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 8 EEFRRALSKLGIKDLSEEE---VDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp HHHHHHHHHTTSSSSCHHH---HHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHH---HHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 6788888433334 66666 88899999999999999999998875
No 55
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=9.8e-05 Score=51.21 Aligned_cols=67 Identities=30% Similarity=0.526 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC----cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 20 VQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN----TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 20 ~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
.+.+-...|...|.|++|.++.+||..++.---. .-.+++.+...|.|+||.|+++||+.=+.....
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~ 231 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEG 231 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccC
Confidence 3455666899999999999999999988763222 123557777899999999999999988876654
No 56
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.83 E-value=0.00012 Score=37.61 Aligned_cols=46 Identities=26% Similarity=0.363 Sum_probs=34.8
Q ss_pred eeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhh
Q 044607 39 ISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 39 i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 84 (110)
++..|++.+++.++. ...+..+|+..|.+++|++..+||..++..+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 577888888888887 3456678888888888888888888887654
No 57
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.77 E-value=5.8e-05 Score=33.12 Aligned_cols=24 Identities=38% Similarity=0.747 Sum_probs=21.3
Q ss_pred HHHHHhcCCCCCCceeHHHHHHHH
Q 044607 58 QELFQSIDQNGDGSLDFVEFLTPF 81 (110)
Q Consensus 58 ~~~~~~~d~~~~g~i~~~ef~~~~ 81 (110)
+..|..+|.|+||.|+++||..++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 568999999999999999998753
No 58
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.00025 Score=49.28 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=60.3
Q ss_pred HHHHhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 10 IICYNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
..+.+..+.+...++..++..+|.+++|.|+.+|+..++..... ...+.+-+...|.+.+|.|+|+++........
T Consensus 65 ~~fd~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~ 143 (325)
T KOG4223|consen 65 DEFDQLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRV 143 (325)
T ss_pred hhhhhhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcc
Confidence 33344455567788999999999999999999999999876554 23345677788999999999999998887643
No 59
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.62 E-value=0.00024 Score=38.01 Aligned_cols=46 Identities=33% Similarity=0.576 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhhcCHH-HHHHHHHHHhhcCCCCCCceeHHHHHHHH
Q 044607 3 QEFHDSAIICYNNATGE-VQNLAKNFFNSMDTNGDGRISRSEFLQFL 48 (110)
Q Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~~~~~F~~~d~~~~G~i~~~el~~~l 48 (110)
++|+..+.......++. ....+..+|+.+|++++|.|+..||..++
T Consensus 20 ~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 20 EELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 56777777665544343 34457778999999999999999998764
No 60
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.56 E-value=0.00021 Score=32.74 Aligned_cols=26 Identities=35% Similarity=0.673 Sum_probs=23.1
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHHH
Q 044607 57 IQELFQSIDQNGDGSLDFVEFLTPFY 82 (110)
Q Consensus 57 ~~~~~~~~d~~~~g~i~~~ef~~~~~ 82 (110)
++.+|..+|.+++|.|+.+||..++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 46799999999999999999999988
No 61
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.31 E-value=0.00043 Score=29.93 Aligned_cols=26 Identities=38% Similarity=0.652 Sum_probs=16.4
Q ss_pred HHHHHhhcCCCCCCceeHHHHHHHHh
Q 044607 24 AKNFFNSMDTNGDGRISRSEFLQFLG 49 (110)
Q Consensus 24 ~~~~F~~~d~~~~G~i~~~el~~~l~ 49 (110)
++.+|..+|.+++|.|+..+|..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34566666666666666666666554
No 62
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.24 E-value=0.00062 Score=46.02 Aligned_cols=66 Identities=21% Similarity=0.378 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC------cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 20 VQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN------TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 20 ~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
....+..+|...|-+.+|.|+..|+++.+..--. ..+.+..|+..|.++||.|+|+||-.-+....
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlask 170 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASK 170 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhc
Confidence 3456888999999999999999999988764211 12334678889999999999999986665544
No 63
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.14 E-value=0.0015 Score=33.48 Aligned_cols=28 Identities=29% Similarity=0.638 Sum_probs=24.0
Q ss_pred HHHHHhhcCCCCCCceeHHHHHHHHhcc
Q 044607 24 AKNFFNSMDTNGDGRISRSEFLQFLGKF 51 (110)
Q Consensus 24 ~~~~F~~~d~~~~G~i~~~el~~~l~~~ 51 (110)
...+|+..|++++|.+..+||..+++.+
T Consensus 23 A~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 23 ARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 6669999999999999999999988754
No 64
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.98 E-value=0.0025 Score=36.61 Aligned_cols=47 Identities=19% Similarity=0.339 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhh-cCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhcc
Q 044607 3 QEFHDSAIICYNN-ATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKF 51 (110)
Q Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~ 51 (110)
++|+..+.+.+.. ++.. ..+..+++.+|.|++|.|+.+||..++..+
T Consensus 29 ~ELk~ll~~elg~~ls~~--~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 29 SEFQELLTQQLPHLLKDV--EGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhhhhccCH--HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 5677777663332 3331 458889999999999999999999887754
No 65
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.88 E-value=0.0021 Score=27.56 Aligned_cols=27 Identities=37% Similarity=0.703 Sum_probs=23.5
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHHHh
Q 044607 57 IQELFQSIDQNGDGSLDFVEFLTPFYF 83 (110)
Q Consensus 57 ~~~~~~~~d~~~~g~i~~~ef~~~~~~ 83 (110)
++.+|..+|.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 457899999999999999999988764
No 66
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.0051 Score=45.44 Aligned_cols=71 Identities=25% Similarity=0.342 Sum_probs=63.3
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC-cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 16 ATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN-TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 16 ~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
.++++.+.+..-|+..-+|..|.|+-+--+.++.+..+ -.++..++...|.+.||.+++.||+..+..+..
T Consensus 225 IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVa 296 (737)
T KOG1955|consen 225 ITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVA 296 (737)
T ss_pred cCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhheee
Confidence 67788888999999999999999999999999988777 456778999999999999999999998877665
No 67
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.0064 Score=36.57 Aligned_cols=65 Identities=23% Similarity=0.380 Sum_probs=46.8
Q ss_pred HhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC-------------cHHHH----HHHHhcCCCCCCceeHH
Q 044607 13 YNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN-------------TQWIQ----ELFQSIDQNGDGSLDFV 75 (110)
Q Consensus 13 ~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-------------~~~~~----~~~~~~d~~~~g~i~~~ 75 (110)
...++++++. -..|...|-|++|.++--|+..++..... ..++. .+++.-|.++||.|+|.
T Consensus 60 ~a~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYg 137 (144)
T KOG4065|consen 60 VAKMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYG 137 (144)
T ss_pred hhhCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHH
Confidence 3457777742 23899999999999999999888763221 12233 45555678999999999
Q ss_pred HHHH
Q 044607 76 EFLT 79 (110)
Q Consensus 76 ef~~ 79 (110)
||+.
T Consensus 138 EflK 141 (144)
T KOG4065|consen 138 EFLK 141 (144)
T ss_pred HHHh
Confidence 9974
No 68
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.66 E-value=0.0049 Score=35.24 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=34.1
Q ss_pred hHHHHHHHHH---HhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhcc
Q 044607 3 QEFHDSAIIC---YNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKF 51 (110)
Q Consensus 3 ~~~~~~~~~~---~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~ 51 (110)
++|++.+.+. -...++++ +..+++.+|.+++|.|+.+||..++..+
T Consensus 32 ~EL~~~l~~~~~lg~k~t~~e---v~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 32 KELKELIQKELTIGSKLQDAE---IAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHhcCCCCCHHH---HHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 5677777643 12344444 7778999999999999999998877654
No 69
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.60 E-value=0.018 Score=42.18 Aligned_cols=66 Identities=21% Similarity=0.418 Sum_probs=51.9
Q ss_pred HHHHHHHHhhcCCCCCCceeHHHHHHHHhc---cCCc-------------------------------------------
Q 044607 21 QNLAKNFFNSMDTNGDGRISRSEFLQFLGK---FNNT------------------------------------------- 54 (110)
Q Consensus 21 ~~~~~~~F~~~d~~~~G~i~~~el~~~l~~---~~~~------------------------------------------- 54 (110)
...+.+.|+.+|++..|.|+.+.+..++.. ++++
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 345788999999999999999998877643 2220
Q ss_pred ----HHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 55 ----QWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 55 ----~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
..++.+|+.+|.|+.|.|+.+||...+..+..
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~s 578 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSS 578 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHh
Confidence 01345888999999999999999999887765
No 70
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.0053 Score=47.48 Aligned_cols=68 Identities=21% Similarity=0.346 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC-cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 18 GEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN-TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 18 ~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
......+...|..+|+...|+++...-+.++.+.++ ...+..++..-|.|+||+++.+||+-.+..+.
T Consensus 191 ~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~lie 259 (1118)
T KOG1029|consen 191 QHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIE 259 (1118)
T ss_pred chhhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHH
Confidence 334455788999999999999999999999998888 45677888999999999999999997776554
No 71
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.54 E-value=0.013 Score=29.79 Aligned_cols=43 Identities=23% Similarity=0.430 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHH
Q 044607 3 QEFHDSAIICYNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFL 48 (110)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l 48 (110)
++|..++.......+.+. +..+|..+|++++|.|+.++|..++
T Consensus 20 ~e~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 20 DELKAALKSLGEGLSEEE---IDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHHHhCCCCCHHH---HHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 345555554433344343 6678999999999999999998764
No 72
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.51 E-value=0.0024 Score=46.23 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=46.8
Q ss_pred HHHHHhhcCCCCCCceeHHHHHHHHhcc------CC------------cHHHH--HHHHhcCCCCCCceeHHHHHHHHHh
Q 044607 24 AKNFFNSMDTNGDGRISRSEFLQFLGKF------NN------------TQWIQ--ELFQSIDQNGDGSLDFVEFLTPFYF 83 (110)
Q Consensus 24 ~~~~F~~~d~~~~G~i~~~el~~~l~~~------~~------------~~~~~--~~~~~~d~~~~g~i~~~ef~~~~~~ 83 (110)
+.-+|..||.|+||.|+.+||..+.... +. ...+. ...-.+..++++++++++|+.++..
T Consensus 235 F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~ 314 (489)
T KOG2643|consen 235 FRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQEN 314 (489)
T ss_pred ceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHH
Confidence 5568999999999999999998876421 11 11122 2334478899999999999999887
Q ss_pred hhc
Q 044607 84 VSN 86 (110)
Q Consensus 84 ~~~ 86 (110)
+..
T Consensus 315 Lq~ 317 (489)
T KOG2643|consen 315 LQE 317 (489)
T ss_pred HHH
Confidence 765
No 73
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.43 E-value=0.0098 Score=34.26 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhh-c-CHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhcc
Q 044607 3 QEFHDSAIICYNN-A-TGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKF 51 (110)
Q Consensus 3 ~~~~~~~~~~~~~-~-~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~ 51 (110)
+||++.+.+.... + .......+..+++.+|.+++|.|+.+||..++..+
T Consensus 32 ~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 32 GELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 4666666553221 1 11123458889999999999999999999888765
No 74
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=96.33 E-value=0.016 Score=33.15 Aligned_cols=46 Identities=22% Similarity=0.391 Sum_probs=32.8
Q ss_pred hHHHHHHHHHH-----hhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhcc
Q 044607 3 QEFHDSAIICY-----NNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKF 51 (110)
Q Consensus 3 ~~~~~~~~~~~-----~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~ 51 (110)
++|+..+.... ...+++. +..+++.+|++++|.|+.++|..++..+
T Consensus 30 ~eL~~ll~~~~~~~lg~~~~~~~---v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 30 SELKELINNELSHFLEEIKEQEV---VDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhHHHhcCCCCHHH---HHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45666666522 2233333 7788889999999999999998877643
No 75
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.26 E-value=0.009 Score=34.24 Aligned_cols=49 Identities=22% Similarity=0.370 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhhcC--HHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhcc
Q 044607 3 QEFHDSAIICYNNAT--GEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKF 51 (110)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~ 51 (110)
+||+..+.+..+.+. ......+..+++.+|.|++|.|+.+||..++..+
T Consensus 31 ~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 31 TEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 456666655543211 1123457789999999999999999999887654
No 76
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.23 E-value=0.011 Score=34.06 Aligned_cols=50 Identities=8% Similarity=0.205 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhhcC--HHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccC
Q 044607 3 QEFHDSAIICYNNAT--GEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFN 52 (110)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~ 52 (110)
.||++.+.+.++.+. ......+..+++.+|.|+||.|+.+||..++..+.
T Consensus 27 ~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 27 DDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 466666655554321 12335588899999999999999999998887653
No 77
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.21 E-value=0.017 Score=32.36 Aligned_cols=61 Identities=16% Similarity=0.330 Sum_probs=46.8
Q ss_pred HHHHHhhcCCCCCCceeHHHHHHHHhccCC-----cHHHHHHHHhcCCC----CCCceeHHHHHHHHHhhh
Q 044607 24 AKNFFNSMDTNGDGRISRSEFLQFLGKFNN-----TQWIQELFQSIDQN----GDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 24 ~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-----~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~~~ 85 (110)
+..+|..+.. +.+.++.++|..++..-.. ...+..++..+..+ ..+.+++++|..++..-.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 6678898866 7999999999999975433 34566777776543 468999999999987554
No 78
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.17 E-value=0.022 Score=41.67 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=52.6
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCCcHHHHHHHHh----cCCCCCCceeHHHHHHHHHhhhc
Q 044607 16 ATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNNTQWIQELFQS----IDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 16 ~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~----~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
++.+..-.+...|-.+|+|.+|.|+.+++...-.......-++++|.+ .-.-.+|+++|++|+.++-.+..
T Consensus 272 FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~ 346 (493)
T KOG2562|consen 272 FSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED 346 (493)
T ss_pred eeHHHHHHHHHHHhhhccccccccCHHHHHHHhccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc
Confidence 344443334445888999999999999999877665556667788883 33457888999999998887764
No 79
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.09 E-value=0.023 Score=32.38 Aligned_cols=49 Identities=31% Similarity=0.405 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhh-cC-HHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhcc
Q 044607 3 QEFHDSAIICYNN-AT-GEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKF 51 (110)
Q Consensus 3 ~~~~~~~~~~~~~-~~-~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~ 51 (110)
++|+..+.+.... ++ ......+..+|+.+|.+++|.|+.++|..++..+
T Consensus 30 ~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 30 KEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4566666533322 22 0003448889999999999999999999887643
No 80
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.00 E-value=0.019 Score=33.01 Aligned_cols=32 Identities=19% Similarity=0.450 Sum_probs=27.1
Q ss_pred HHHHHHHhhcCCCCCCceeHHHHHHHHhccCC
Q 044607 22 NLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN 53 (110)
Q Consensus 22 ~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~ 53 (110)
..+..+++.+|.+++|.|+.++|..++...++
T Consensus 51 ~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 51 MAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 34788899999999999999999988876554
No 81
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=95.91 E-value=0.039 Score=29.08 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhc
Q 044607 3 QEFHDSAIICYNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGK 50 (110)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~ 50 (110)
+++++++... ..+.+. +..+|..+|++++|.|+.++|..++..
T Consensus 19 ~el~~~l~~~--g~~~~~---~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 19 DEARPFLGKS--GLPRSV---LAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred HHHHHHHHHc--CCCHHH---HHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 3455555432 234443 778899999999999999999887754
No 82
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=95.81 E-value=0.041 Score=31.43 Aligned_cols=29 Identities=24% Similarity=0.583 Sum_probs=25.3
Q ss_pred HHHHHHhhcCCCCCCceeHHHHHHHHhcc
Q 044607 23 LAKNFFNSMDTNGDGRISRSEFLQFLGKF 51 (110)
Q Consensus 23 ~~~~~F~~~d~~~~G~i~~~el~~~l~~~ 51 (110)
.+..+++.+|++++|.|+.++|..++..+
T Consensus 53 ~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 53 AVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 47888999999999999999999887654
No 83
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.77 E-value=0.13 Score=32.44 Aligned_cols=61 Identities=13% Similarity=0.304 Sum_probs=48.2
Q ss_pred HHHhhcCCCCCCceeHHHHHHHHhccCC------cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 26 NFFNSMDTNGDGRISRSEFLQFLGKFNN------TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 26 ~~F~~~d~~~~G~i~~~el~~~l~~~~~------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
..|..|.+.+...++...|..+++..++ ...++.+|..+...+..+|+|++|+.++..+..
T Consensus 6 ~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~ 72 (154)
T PF05517_consen 6 KAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAE 72 (154)
T ss_dssp HHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHH
T ss_pred HHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHH
Confidence 3566667777788999999999998888 346778999977666678999999999987765
No 84
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.73 E-value=0.028 Score=42.30 Aligned_cols=77 Identities=22% Similarity=0.203 Sum_probs=66.5
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhccccccC
Q 044607 16 ATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSNWRVKCD 92 (110)
Q Consensus 16 ~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 92 (110)
+++++....+..|+.+|.++.|+++..+...+++..+. .+..+++++..+...+|.+...||..+++.+..+.+...
T Consensus 587 ~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~~~~~ 666 (680)
T KOG0042|consen 587 LTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGCTEGS 666 (680)
T ss_pred cCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCChHHH
Confidence 67788888999999999999999999999999988774 445668888888888999999999999999888766554
No 85
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=95.52 E-value=0.056 Score=31.10 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhcc
Q 044607 3 QEFHDSAIICYNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKF 51 (110)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~ 51 (110)
++++.++.. ..+++++ +..+|..+|.+++|.|+.++|..++..+
T Consensus 30 ~el~~~l~~--~~~~~~e---v~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 30 AQAKPILLK--SGLPQTL---LAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHH--cCCCHHH---HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 345555544 2355444 7778899999999999999999887643
No 86
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=95.39 E-value=0.034 Score=34.94 Aligned_cols=67 Identities=15% Similarity=0.291 Sum_probs=52.0
Q ss_pred HHHhhcCCCCCCceeHHHHHHHHhccCC--cH--HHHHHHHhcCCCCCCceeHHHHHHHHHhhhccccccC
Q 044607 26 NFFNSMDTNGDGRISRSEFLQFLGKFNN--TQ--WIQELFQSIDQNGDGSLDFVEFLTPFYFVSNWRVKCD 92 (110)
Q Consensus 26 ~~F~~~d~~~~G~i~~~el~~~l~~~~~--~~--~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 92 (110)
++.++|..||.|.++.++|.+++.-++. +. .+...|+..|-++|+.|...+....+..+.++.++..
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~e 145 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDE 145 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHH
Confidence 3556777899999999999998876655 22 2346777789999999999999988888887766654
No 87
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.34 E-value=0.022 Score=40.17 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=47.4
Q ss_pred HHhhcCCCCCCceeHHHH---HHHHhccCC-cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 27 FFNSMDTNGDGRISRSEF---LQFLGKFNN-TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 27 ~F~~~d~~~~G~i~~~el---~~~l~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
.|..+|++.++.|+..|+ ..++..... ..=.+.+++..|.++|..|++.|+...+.....
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 688999999999998885 455544333 344568999999999999999999988876554
No 88
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.33 E-value=0.022 Score=40.42 Aligned_cols=67 Identities=27% Similarity=0.253 Sum_probs=53.9
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCCcHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 044607 16 ATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNNTQWIQELFQSIDQNGDGSLDFVEFLTPFYF 83 (110)
Q Consensus 16 ~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 83 (110)
+.+.-...+.=+|..+|.+.+|.++..|+..+..- +...=++.+|+..|...||.|+-.|++..+..
T Consensus 244 ~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld-knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 244 ILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD-KNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred cCcchhhhhhhhhhccccccccccCHHHhhhhhcc-CchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 44455666777999999999999999999987542 23444678999999999999999999876553
No 89
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.22 E-value=0.032 Score=42.09 Aligned_cols=71 Identities=18% Similarity=0.392 Sum_probs=53.5
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCCcHHHHHHHH-hcCCCCCCceeHHHHHHHHHhhh
Q 044607 15 NATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNNTQWIQELFQ-SIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 15 ~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~~~~~~~~~-~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
++++.-+..+..+|..+|.|+||.++.+|++.++...+..++..-... .-..+..|.+++..|+..|+.+.
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~WsL~T 379 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWSLMT 379 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHHHHh
Confidence 467778889999999999999999999999999987766443221111 11223678999999998887554
No 90
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=94.82 E-value=0.078 Score=38.94 Aligned_cols=57 Identities=12% Similarity=0.310 Sum_probs=42.6
Q ss_pred HHHHHHhhcCCCCCCceeHHHHHHHHhcc-------CC-----cHHHHHHHHhcCCCCCCceeHHHHHH
Q 044607 23 LAKNFFNSMDTNGDGRISRSEFLQFLGKF-------NN-----TQWIQELFQSIDQNGDGSLDFVEFLT 79 (110)
Q Consensus 23 ~~~~~F~~~d~~~~G~i~~~el~~~l~~~-------~~-----~~~~~~~~~~~d~~~~g~i~~~ef~~ 79 (110)
.+.-+|+.+|-+++|.++..|+.-++... +. .+-...+++.+.+...++|+..+|..
T Consensus 352 SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 352 SLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred chhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 36669999999999999999988776532 11 22344677777777788999988864
No 91
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=94.42 E-value=0.065 Score=37.87 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC--cHHHHHHHHhcCCCCCCceeHHHHHHHHHhh
Q 044607 17 TGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN--TQWIQELFQSIDQNGDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 17 ~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~--~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 84 (110)
++.....++-.|..|+-+.||++..++|..+++.... ...+-.+|...+...+++|++++|..+...-
T Consensus 291 p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 291 PPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred CCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccchhhhcccCcceeHHHHHHHHHhC
Confidence 3444455888999999999999999999988875433 3345578888898889999999998876543
No 92
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=94.28 E-value=0.12 Score=30.52 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=27.2
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhc
Q 044607 15 NATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGK 50 (110)
Q Consensus 15 ~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~ 50 (110)
.++.+. +.++|...|.+++|+++.+||..+++-
T Consensus 39 ~L~~~~---L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 39 GLPRDV---LAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp TSSHHH---HHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCHHH---HHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 466655 888999999999999999999988763
No 93
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=94.25 E-value=0.46 Score=34.91 Aligned_cols=61 Identities=18% Similarity=0.409 Sum_probs=44.8
Q ss_pred HHHHHhhcCCCCCCceeHHHHHHHHhccCC------cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 24 AKNFFNSMDTNGDGRISRSEFLQFLGKFNN------TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 24 ~~~~F~~~d~~~~G~i~~~el~~~l~~~~~------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
+.--|..+|+..+|.|+..+|..++-.... ....+++-..+... +..|+++||..+..-+.
T Consensus 320 l~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~ 386 (489)
T KOG2643|consen 320 LELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLN 386 (489)
T ss_pred HHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHh
Confidence 555799999999999999999988765443 22345666667655 56799998887765444
No 94
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=94.18 E-value=0.08 Score=31.87 Aligned_cols=25 Identities=40% Similarity=0.574 Sum_probs=23.0
Q ss_pred HHHHHhhcCCCCCCceeHHHHHHHH
Q 044607 24 AKNFFNSMDTNGDGRISRSEFLQFL 48 (110)
Q Consensus 24 ~~~~F~~~d~~~~G~i~~~el~~~l 48 (110)
+..+|..+|.|++|.|+.+||..++
T Consensus 82 ~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 82 IKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 5678999999999999999999988
No 95
>PF14658 EF-hand_9: EF-hand domain
Probab=93.90 E-value=0.42 Score=25.87 Aligned_cols=28 Identities=21% Similarity=0.515 Sum_probs=24.7
Q ss_pred HHHHHHhhcCCCCC-CceeHHHHHHHHhc
Q 044607 23 LAKNFFNSMDTNGD-GRISRSEFLQFLGK 50 (110)
Q Consensus 23 ~~~~~F~~~d~~~~-G~i~~~el~~~l~~ 50 (110)
+++.+.+.+||++. |.|+.+.|..+++.
T Consensus 36 ~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 36 ELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 58889999999998 99999999988764
No 96
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=93.74 E-value=0.2 Score=28.16 Aligned_cols=30 Identities=30% Similarity=0.661 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCCCCCCceeHHHHHHHHhcc
Q 044607 22 NLAKNFFNSMDTNGDGRISRSEFLQFLGKF 51 (110)
Q Consensus 22 ~~~~~~F~~~d~~~~G~i~~~el~~~l~~~ 51 (110)
..+..++..+|.+++|.|+.++|..++...
T Consensus 51 ~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 51 EAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 347778999999999999999999887643
No 97
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.24 E-value=0.5 Score=37.57 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=59.8
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCCcHH-----HH---HHHHhcCCCCCCceeHHHH
Q 044607 6 HDSAIICYNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNNTQW-----IQ---ELFQSIDQNGDGSLDFVEF 77 (110)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~~~-----~~---~~~~~~d~~~~g~i~~~ef 77 (110)
.+++.+-.+..+.....++...|+.+++...|..+.+++..++..+|++.. .. .+....+....|+|++.+|
T Consensus 731 n~il~R~sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~ 810 (890)
T KOG0035|consen 731 NEILERDSKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEF 810 (890)
T ss_pred HHHHHhcccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHH
Confidence 334444456677788899999999999999999999999999999999221 22 3444456666689999999
Q ss_pred HHHHHh
Q 044607 78 LTPFYF 83 (110)
Q Consensus 78 ~~~~~~ 83 (110)
...+..
T Consensus 811 ~ddl~R 816 (890)
T KOG0035|consen 811 EDDLER 816 (890)
T ss_pred HhHhhh
Confidence 888764
No 98
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=93.19 E-value=0.21 Score=41.93 Aligned_cols=55 Identities=22% Similarity=0.470 Sum_probs=43.7
Q ss_pred HHhhcCCCCCCceeHHHHHHHHhccCC--cHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 044607 27 FFNSMDTNGDGRISRSEFLQFLGKFNN--TQWIQELFQSIDQNGDGSLDFVEFLTPF 81 (110)
Q Consensus 27 ~F~~~d~~~~G~i~~~el~~~l~~~~~--~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 81 (110)
-|..+|+|+.|.|+..+|..++..-.. ..+.+-++.-...+.+...+|++|+.-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 366789999999999999999875444 4455566777778899999999998654
No 99
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=93.13 E-value=0.74 Score=34.55 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=40.6
Q ss_pred hcCCCCCCceeHHHHHHHHhccCCc-HHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 30 SMDTNGDGRISRSEFLQFLGKFNNT-QWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 30 ~~d~~~~G~i~~~el~~~l~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
+.|..+||.|+++||..+-.-+-.+ ......|..+|..++|.++++++..++..+.-
T Consensus 82 iaD~tKDglisf~eF~afe~~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l 139 (694)
T KOG0751|consen 82 IADQTKDGLISFQEFRAFESVLCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNL 139 (694)
T ss_pred hhhhcccccccHHHHHHHHhhccCchHHHHHHHHHhcccCCCceehHHHHHHHhcccc
Confidence 4567788888888887654333332 23346788888888888999988888876653
No 100
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=93.00 E-value=0.37 Score=37.48 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhccc
Q 044607 19 EVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSNWR 88 (110)
Q Consensus 19 ~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 88 (110)
+...-+..+|+..|++.+|.++..+..+++..++. ......+|+..+...++++...+|..+.......+
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp 205 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP 205 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc
Confidence 34455788999999999999999999999988777 23344677777888889999999998887766533
No 101
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=92.95 E-value=0.19 Score=37.50 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=27.3
Q ss_pred HHHHHhhcCCCCCCceeHHHHHHHHhccCC
Q 044607 24 AKNFFNSMDTNGDGRISRSEFLQFLGKFNN 53 (110)
Q Consensus 24 ~~~~F~~~d~~~~G~i~~~el~~~l~~~~~ 53 (110)
...+|+.||+.++|.++.+++.+++.+..+
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l 139 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNL 139 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhcccc
Confidence 667999999999999999999999988766
No 102
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=91.15 E-value=0.46 Score=34.50 Aligned_cols=35 Identities=31% Similarity=0.375 Sum_probs=28.6
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhc
Q 044607 16 ATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGK 50 (110)
Q Consensus 16 ~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~ 50 (110)
.+.++......+|..+|+|++|.|+.+||...+..
T Consensus 351 Is~~E~~~~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 351 ITREEWLGSDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred CcHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 44555544678999999999999999999998764
No 103
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=90.76 E-value=1.5 Score=30.17 Aligned_cols=66 Identities=21% Similarity=0.324 Sum_probs=47.9
Q ss_pred HHHHHHHHHh-hcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 20 VQNLAKNFFN-SMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 20 ~~~~~~~~F~-~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
+.+.-++-|. .+|.+.+|.++.+|+.....-.+. -.++..++..-|.+++.+++.++.+.---.+.
T Consensus 278 wvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r~~~~~ 347 (362)
T KOG4251|consen 278 WVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLERDWLLA 347 (362)
T ss_pred HHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHHHhhhc
Confidence 4444445565 689999999999999988654444 23455777888899999999999876544333
No 104
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.67 E-value=0.23 Score=39.47 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=61.2
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC-cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 15 NATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN-TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 15 ~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
..++.....+.++|...|++.+|.|+..+....+...|+ ...+..++...+....|.+++.+|+..+..+..
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~ 348 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQ 348 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCcccccccccccccCCCChhhhhhhhhhcchhccCcccccccchhhhhhhh
Confidence 345666777888999999999999999999998888777 566778999999999999999999888776665
No 105
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.56 E-value=3.9 Score=32.60 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC-cHHHHHHHHhcCCCCCCceeHHHHHHHHHhh
Q 044607 17 TGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN-TQWIQELFQSIDQNGDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 17 ~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 84 (110)
++++.......|..+ +.+-|+|+-..-+.++-+.++ .+.+..++..-|.|+||+++..||.-.+..+
T Consensus 11 T~~Er~K~~~qF~~L-kp~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi 78 (1118)
T KOG1029|consen 11 TDEERQKHDAQFGQL-KPGQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLI 78 (1118)
T ss_pred chHHHHHHHHHHhcc-CCCCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHH
Confidence 344433333344433 456899999999999988888 4556789999999999999999998666544
No 106
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=87.56 E-value=3.8 Score=23.57 Aligned_cols=60 Identities=12% Similarity=0.211 Sum_probs=36.4
Q ss_pred HHHHHHHhhcCCCCCCceeHHHHHHHHhc-------cCC-------cHHHHHHHHhcCCCCCCceeHHHHHHHHHhh
Q 044607 22 NLAKNFFNSMDTNGDGRISRSEFLQFLGK-------FNN-------TQWIQELFQSIDQNGDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 22 ~~~~~~F~~~d~~~~G~i~~~el~~~l~~-------~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 84 (110)
+.++-+|+.+ .|++|.++...|...++. ++. ...++..|... ..+..|+.++|+.++..-
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 3466678876 788999999888877664 222 34455666665 345689999999888754
No 107
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=86.92 E-value=0.65 Score=32.85 Aligned_cols=56 Identities=25% Similarity=0.338 Sum_probs=40.2
Q ss_pred HHhhcCCCCCCceeHHHHHHHHhccC--------CcHH-----------HHHHHHhcCCCCCCceeHHHHHHHHH
Q 044607 27 FFNSMDTNGDGRISRSEFLQFLGKFN--------NTQW-----------IQELFQSIDQNGDGSLDFVEFLTPFY 82 (110)
Q Consensus 27 ~F~~~d~~~~G~i~~~el~~~l~~~~--------~~~~-----------~~~~~~~~d~~~~g~i~~~ef~~~~~ 82 (110)
.|...|.+++|.++..|+..++..-- ..++ .+.+++..|.+.|..|+.+||+..--
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 45666778999999999887765311 1111 22578889999999999999976543
No 108
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=86.50 E-value=0.53 Score=33.66 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=42.1
Q ss_pred HHHHHHHhhcCCCCCCceeHHHHHHHHh---c-cCC--cHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 044607 22 NLAKNFFNSMDTNGDGRISRSEFLQFLG---K-FNN--TQWIQELFQSIDQNGDGSLDFVEFLTPFYF 83 (110)
Q Consensus 22 ~~~~~~F~~~d~~~~G~i~~~el~~~l~---~-~~~--~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 83 (110)
.++.++|..+=.++++......+..+-. . +.. +..+.++|+.+|.+.|+.++..|...+...
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld 278 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD 278 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc
Confidence 4578899977655555444444443311 1 222 567889999999999999999998766543
No 109
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=86.26 E-value=5.4 Score=25.80 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=21.8
Q ss_pred HHHHHhhcCCCCCCceeHHHHHHHHhccCC
Q 044607 24 AKNFFNSMDTNGDGRISRSEFLQFLGKFNN 53 (110)
Q Consensus 24 ~~~~F~~~d~~~~G~i~~~el~~~l~~~~~ 53 (110)
+++=..-||+|+||.|...|--.-++.+|.
T Consensus 9 LQqHvaFFDrd~DGiI~P~dTy~GFraLGf 38 (174)
T PF05042_consen 9 LQQHVAFFDRDKDGIIYPWDTYQGFRALGF 38 (174)
T ss_pred HhhhhceeCCCCCeeECHHHHHHHHHHhCC
Confidence 455556789999999998887666665554
No 110
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=84.32 E-value=0.71 Score=39.13 Aligned_cols=70 Identities=9% Similarity=0.104 Sum_probs=53.6
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCCcHHH------HHHHHhcCCCCCCceeHHHHHHHHHhh
Q 044607 15 NATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNNTQWI------QELFQSIDQNGDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 15 ~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~~~~------~~~~~~~d~~~~g~i~~~ef~~~~~~~ 84 (110)
.+++.+.+.++.++..+|++..|.|...++.++++.+..+..+ +.+-..+....++.|++.+-+.++..-
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 4777888999999999999999999999999999987773221 223333455678889988877666644
No 111
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=82.25 E-value=1.9 Score=28.73 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCCCCceeHHHHHHHHHhhhcccccc
Q 044607 56 WIQELFQSIDQNGDGSLDFVEFLTPFYFVSNWRVKC 91 (110)
Q Consensus 56 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 91 (110)
+...+|+.+|.+.||.|++.|.-.++-+++......
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL 135 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHL 135 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCchhhH
Confidence 456899999999999999999999999887644433
No 112
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=82.18 E-value=8 Score=22.69 Aligned_cols=65 Identities=20% Similarity=0.316 Sum_probs=42.3
Q ss_pred HHHHHHHHhhcCCCCCCceeHHHHHHHHhccCCcHHHHHHHHhcCC---CCCCceeHHHHHHHHHhhhcc
Q 044607 21 QNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNNTQWIQELFQSIDQ---NGDGSLDFVEFLTPFYFVSNW 87 (110)
Q Consensus 21 ~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~d~---~~~g~i~~~ef~~~~~~~~~~ 87 (110)
...+..-|..+-. +|.++.++|..++..-.-..-..++|..+.. -....|+.+|...++..+...
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD~ 96 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIGMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISDQ 96 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcCCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhcc
Confidence 4567777777777 8999999999998733224445567776532 235789999999998877543
No 113
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=80.30 E-value=13 Score=24.04 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=37.3
Q ss_pred HHHHHHhhcCCCCCCceeHHHHHHHHhccCC--------cHHHHH-HHHhcCCCCCCceeHHHHHHH
Q 044607 23 LAKNFFNSMDTNGDGRISRSEFLQFLGKFNN--------TQWIQE-LFQSIDQNGDGSLDFVEFLTP 80 (110)
Q Consensus 23 ~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~--------~~~~~~-~~~~~d~~~~g~i~~~ef~~~ 80 (110)
.+.++|..+++.+.+.++..|+..+++.--. ....+. +.=.+-.+.+|.+..+....+
T Consensus 97 kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 97 KFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDIRGV 163 (174)
T ss_pred HHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHHhhh
Confidence 4888999999999999999999998875222 111221 111123466777777655443
No 114
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=78.36 E-value=3.5 Score=24.59 Aligned_cols=23 Identities=48% Similarity=0.755 Sum_probs=18.0
Q ss_pred HHHHHhhcCCCCCCceeHHHHHH
Q 044607 24 AKNFFNSMDTNGDGRISRSEFLQ 46 (110)
Q Consensus 24 ~~~~F~~~d~~~~G~i~~~el~~ 46 (110)
+...|+..|.|+||.|+..|+..
T Consensus 90 ~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 90 ARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHH-TT-SSSEEHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHcc
Confidence 56688899999999999999864
No 115
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=75.95 E-value=10 Score=27.25 Aligned_cols=62 Identities=16% Similarity=0.069 Sum_probs=45.8
Q ss_pred HHHHHHHhhcCCCCCCceeHHHHHHHHhccCC----cHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 044607 22 NLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN----TQWIQELFQSIDQNGDGSLDFVEFLTPFYF 83 (110)
Q Consensus 22 ~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 83 (110)
+.+...|..||.+.+|.++..+-...+.-+-. ...++.-|+.++.+.||.+.-.++..++..
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 34677899999999999988876655443333 445778888999999999988777655543
No 116
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=75.82 E-value=1.3 Score=29.43 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=37.6
Q ss_pred HhhcCCC-CCCceeHHHHHHHHhccCCc--HHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 044607 28 FNSMDTN-GDGRISRSEFLQFLGKFNNT--QWIQELFQSIDQNGDGSLDFVEFLTPFY 82 (110)
Q Consensus 28 F~~~d~~-~~G~i~~~el~~~l~~~~~~--~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 82 (110)
|..+|+. -||+++..|+.-+ +.--++ .=...+|...|.++|+.|+..|+...++
T Consensus 193 f~qld~~p~d~~~sh~el~pl-~ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPL-RAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eccccCCCccccccccccccc-cCCcccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 4556653 4899999888733 221111 1234799999999999999999976654
No 117
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.20 E-value=3 Score=30.31 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=39.3
Q ss_pred HHHHHHhhcCCCCCCceeHHHHHHHHhccCC----cHHHHHHHHhcCCCCCCceeHHHHH
Q 044607 23 LAKNFFNSMDTNGDGRISRSEFLQFLGKFNN----TQWIQELFQSIDQNGDGSLDFVEFL 78 (110)
Q Consensus 23 ~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~ 78 (110)
.+++.|+..|+.++|+|+.+-++.++..++. +..+..+-..+|...-|.|-.++|.
T Consensus 310 q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 310 QLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred HHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccc
Confidence 4888999999999999999999999888773 2333333334555555555554443
No 118
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=74.86 E-value=5.6 Score=21.69 Aligned_cols=51 Identities=12% Similarity=0.259 Sum_probs=34.1
Q ss_pred HHHHHhhcCCCCCCceeHHHHHHHHhccCCcHHHHHHHHhcCC-------CCCCceeHHHHHH
Q 044607 24 AKNFFNSMDTNGDGRISRSEFLQFLGKFNNTQWIQELFQSIDQ-------NGDGSLDFVEFLT 79 (110)
Q Consensus 24 ~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~ 79 (110)
+...|+.+ .++.++|+..+|...+.. ..++.++..+.. ...|.++|..|+.
T Consensus 8 v~~aFr~l-A~~KpyVT~~dLr~~l~p----e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 8 VEEAFRAL-AGGKPYVTEEDLRRSLTP----EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHH-CTSSSCEEHHHHHHHS-C----CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHH-HcCCCcccHHHHHHHcCc----HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 77899988 778899999999976442 223555555432 2236788888764
No 119
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=74.76 E-value=5.5 Score=30.90 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=38.0
Q ss_pred HHHHHHHhhcCCCCCCceeHHHHHHHHhccCCcHH---HHHHHHhcCCCCCCceeHHHH
Q 044607 22 NLAKNFFNSMDTNGDGRISRSEFLQFLGKFNNTQW---IQELFQSIDQNGDGSLDFVEF 77 (110)
Q Consensus 22 ~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~~~---~~~~~~~~d~~~~g~i~~~ef 77 (110)
....+.|+.+|.+++|.++..++...+..+...+. +..++...+.+++ ..+-++.
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 44667888899999999998888877776555332 3356666777766 6555544
No 120
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=72.93 E-value=32 Score=27.42 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=50.4
Q ss_pred HHHHHhhcCCCCCCceeHHHHHHHHhccCCcHHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 24 AKNFFNSMDTNGDGRISRSEFLQFLGKFNNTQWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 24 ~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
....|+..+...++.+...++..+...+...+++..+|.....+ .+.++.++++.++....
T Consensus 174 ~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q 234 (746)
T KOG0169|consen 174 ARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQYSHG-KEYLSTDDLLRFLEEEQ 234 (746)
T ss_pred HHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHHHhCC-CCccCHHHHHHHHHHhc
Confidence 55577777888999999999999999888877888888887755 78898888888877663
No 121
>PLN02952 phosphoinositide phospholipase C
Probab=72.34 E-value=13 Score=28.73 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=38.9
Q ss_pred CCCceeHHHHHHHHhccCC-----cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 35 GDGRISRSEFLQFLGKFNN-----TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 35 ~~G~i~~~el~~~l~~~~~-----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
+.|.++.++|..+.+.+.. ++++..+|..+..+ ++.++.++|..++...+.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCC
Confidence 4688888988877776643 56788888888644 367999999998887665
No 122
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.99 E-value=5.4 Score=30.24 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=26.8
Q ss_pred HHHHHHHHhhcCCCCCCceeHHHHHHHHhc
Q 044607 21 QNLAKNFFNSMDTNGDGRISRSEFLQFLGK 50 (110)
Q Consensus 21 ~~~~~~~F~~~d~~~~G~i~~~el~~~l~~ 50 (110)
+.++..+|+..|-|.||.++..||..++..
T Consensus 264 i~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 264 IEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred hHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 456899999999999999999999988764
No 123
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.75 E-value=8.2 Score=31.08 Aligned_cols=70 Identities=20% Similarity=0.270 Sum_probs=56.8
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCCc-HHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 15 NATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNNT-QWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 15 ~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
..+..+...+..+|+.+.+. +|.++....+-++...++. ..+.+++...|.+.+|.++..||...+....
T Consensus 122 ~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~ 192 (847)
T KOG0998|consen 122 AITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLIN 192 (847)
T ss_pred CCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCCCChhhhccccccccccccCCCChhhhhhhhhHHH
Confidence 35667778888889988887 8888888888888877774 4455889999999999999999987766443
No 124
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=66.11 E-value=16 Score=28.50 Aligned_cols=31 Identities=19% Similarity=0.431 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHHHhhhcc
Q 044607 57 IQELFQSIDQNGDGSLDFVEFLTPFYFVSNW 87 (110)
Q Consensus 57 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 87 (110)
..++|...|.+.+|.++|.+++..+..+..+
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~ 587 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSILKAG 587 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHHHhh
Confidence 4589999999999999999999999888763
No 125
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=65.86 E-value=8 Score=23.36 Aligned_cols=29 Identities=28% Similarity=0.575 Sum_probs=20.8
Q ss_pred cHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 044607 54 TQWIQELFQSIDQNGDGSLDFVEFLTPFY 82 (110)
Q Consensus 54 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 82 (110)
+.+.+.++..+-.+..|+|.|.+|+.-++
T Consensus 6 DeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 6 DEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred HHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 45567888899999999999999987666
No 126
>PLN02228 Phosphoinositide phospholipase C
Probab=61.78 E-value=46 Score=25.77 Aligned_cols=59 Identities=20% Similarity=0.520 Sum_probs=41.8
Q ss_pred HHHHHhhcCCCCCCceeHHHHHHHHhccCC-----cHHHHHHHHhcCCC----CCCceeHHHHHHHHHhh
Q 044607 24 AKNFFNSMDTNGDGRISRSEFLQFLGKFNN-----TQWIQELFQSIDQN----GDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 24 ~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-----~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~~ 84 (110)
+..+|..+-. ++.++.++|..++..... ...+..++..+... ..+.++.+.|..++..-
T Consensus 26 i~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 26 IKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred HHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 6667776653 357999999999876544 23456778776543 34679999999988654
No 127
>PLN02222 phosphoinositide phospholipase C 2
Probab=60.77 E-value=39 Score=26.23 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=41.8
Q ss_pred HHHHHhhcCCCCCCceeHHHHHHHHhccCC-----cHHHHHHHHhcCC-CCCCceeHHHHHHHHHhh
Q 044607 24 AKNFFNSMDTNGDGRISRSEFLQFLGKFNN-----TQWIQELFQSIDQ-NGDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 24 ~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-----~~~~~~~~~~~d~-~~~g~i~~~ef~~~~~~~ 84 (110)
+..+|..+.. ++.++.++|..++..... ....+.++..+.. ...+.++++.|..++..-
T Consensus 27 i~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 27 IKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 6667777653 479999999999876544 2345567776532 345679999999998753
No 128
>PF14164 YqzH: YqzH-like protein
Probab=59.96 E-value=26 Score=18.85 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=19.1
Q ss_pred HHHHHhhcCCC-CCCceeHHHHHHHHhc
Q 044607 24 AKNFFNSMDTN-GDGRISRSEFLQFLGK 50 (110)
Q Consensus 24 ~~~~F~~~d~~-~~G~i~~~el~~~l~~ 50 (110)
+...|+.+..| ..-.++..|+..+...
T Consensus 10 i~~~l~QYg~d~~~~pls~~E~~~L~~~ 37 (64)
T PF14164_consen 10 IINCLRQYGYDVECMPLSDEEWEELCKH 37 (64)
T ss_pred HHHHHHHhCCcccCCCCCHHHHHHHHHH
Confidence 56677888776 5677777777766654
No 129
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=59.69 E-value=8.7 Score=23.91 Aligned_cols=17 Identities=12% Similarity=0.131 Sum_probs=10.2
Q ss_pred CCCceeHHHHHHHHHhh
Q 044607 68 GDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 68 ~~g~i~~~ef~~~~~~~ 84 (110)
..+.|+|+.|..++...
T Consensus 45 ~~~~Id~egF~~Fm~~y 61 (138)
T PF14513_consen 45 PEEPIDYEGFKLFMKTY 61 (138)
T ss_dssp ETTEE-HHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHH
Confidence 34477777777776643
No 130
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=58.30 E-value=46 Score=21.25 Aligned_cols=50 Identities=12% Similarity=0.296 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHhh-cCC-CCCCceeHHHHHHHHhccCCcHH
Q 044607 3 QEFHDSAIICYNNATGEVQNLAKNFFNS-MDT-NGDGRISRSEFLQFLGKFNNTQW 56 (110)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~-~d~-~~~G~i~~~el~~~l~~~~~~~~ 56 (110)
+||.+.+.+.++.+|+++.++...-|+. +|- ..+|. +.+ +++..+|.+.+
T Consensus 4 ~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~-sEe---eii~~LG~P~~ 55 (181)
T PF08006_consen 4 NEFLNELEKYLKKLPEEEREEILEYYEEYFDDAGEEGK-SEE---EIIAELGSPKE 55 (181)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCC-CHH---HHHHHcCCHHH
Confidence 7899999999999999988887777773 332 23333 333 44566666544
No 131
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.03 E-value=20 Score=26.51 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=31.7
Q ss_pred CCceeHHHHHHHHhccCC-cHHHHHHHHhcCCCCCCceeHHHHHHH
Q 044607 36 DGRISRSEFLQFLGKFNN-TQWIQELFQSIDQNGDGSLDFVEFLTP 80 (110)
Q Consensus 36 ~G~i~~~el~~~l~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~ 80 (110)
+|.|+-..-...+-...+ +..+-++++..|.+.||.++-+||.-.
T Consensus 457 ~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 457 NGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred CceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 566665554444433444 444568999999999999999999744
No 132
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=54.85 E-value=16 Score=14.99 Aligned_cols=12 Identities=33% Similarity=0.819 Sum_probs=5.6
Q ss_pred CCCCceeHHHHH
Q 044607 34 NGDGRISRSEFL 45 (110)
Q Consensus 34 ~~~G~i~~~el~ 45 (110)
+++|.|+.-++.
T Consensus 3 N~DG~vna~D~~ 14 (21)
T PF00404_consen 3 NGDGKVNAIDLA 14 (21)
T ss_dssp TSSSSSSHHHHH
T ss_pred CCCCcCCHHHHH
Confidence 445555444443
No 133
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=54.59 E-value=47 Score=20.22 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhcCCC--CCCceeHHHHHHHHhccC--------C--c-H----------HHHHHHHhcCCCCCCceeHHH
Q 044607 20 VQNLAKNFFNSMDTN--GDGRISRSEFLQFLGKFN--------N--T-Q----------WIQELFQSIDQNGDGSLDFVE 76 (110)
Q Consensus 20 ~~~~~~~~F~~~d~~--~~G~i~~~el~~~l~~~~--------~--~-~----------~~~~~~~~~d~~~~g~i~~~e 76 (110)
....+..+|+...-+ .+..++..++..++..+- . + + -+..+++.+|.++.|+|+.-.
T Consensus 39 ~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls 118 (127)
T PF09068_consen 39 DLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLS 118 (127)
T ss_dssp -HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHH
T ss_pred eHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhH
Confidence 444567788876643 357799999887766543 1 1 1 133788889999999999988
Q ss_pred HHHHHHhh
Q 044607 77 FLTPFYFV 84 (110)
Q Consensus 77 f~~~~~~~ 84 (110)
|-..+..+
T Consensus 119 ~KvaL~~L 126 (127)
T PF09068_consen 119 FKVALITL 126 (127)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 87766544
No 134
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=52.90 E-value=74 Score=21.95 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=31.8
Q ss_pred HHHHH-HhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHh
Q 044607 8 SAIIC-YNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLG 49 (110)
Q Consensus 8 ~~~~~-~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~ 49 (110)
++++. ...++..+++.++++++.++.+ +|.++..++.+-+.
T Consensus 168 a~Vq~Ai~tLSySEleAv~~IL~~L~~~-egrlse~eLAerlG 209 (251)
T TIGR02787 168 AAVQMAINTLSYSELEAVEHIFEELDGN-EGLLVASKIADRVG 209 (251)
T ss_pred HHHHHHHHhccHhHHHHHHHHHHHhccc-cccccHHHHHHHHC
Confidence 44444 6789999999999999988654 68899998886544
No 135
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=51.86 E-value=53 Score=22.93 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=32.7
Q ss_pred HhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCCc-HHHHHHHH
Q 044607 13 YNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNNT-QWIQELFQ 62 (110)
Q Consensus 13 ~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~-~~~~~~~~ 62 (110)
-..++.+++.+++.-|+. +.+|+..--+.+-..++++ .+++.+|.
T Consensus 250 RTAFtaeQL~RLK~EF~e-----nRYlTEqRRQ~La~ELgLNEsQIKIWFQ 295 (342)
T KOG0493|consen 250 RTAFTAEQLQRLKAEFQE-----NRYLTEQRRQELAQELGLNESQIKIWFQ 295 (342)
T ss_pred cccccHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhCcCHHHhhHHhh
Confidence 345888999999999985 6788877777777778884 34444444
No 136
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=50.10 E-value=55 Score=26.99 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=39.4
Q ss_pred eHHHHHHHHhccCCcHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 40 SRSEFLQFLGKFNNTQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 40 ~~~el~~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
+.+.|..++..+-..++++.+|..+..++...++.++++.+++.-.+
T Consensus 206 ~~e~f~~~l~klcpR~eie~iF~ki~~~~kpylT~~ql~dfln~~Qr 252 (1189)
T KOG1265|consen 206 TLEKFYRLLNKLCPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQR 252 (1189)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHhccCCCccccHHHHHHHHhhhcc
Confidence 45556777787777889999999999888889999999999997665
No 137
>PRK08181 transposase; Validated
Probab=48.39 E-value=37 Score=23.44 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=30.0
Q ss_pred CCceeHHHHHHHHhccCCcHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 044607 36 DGRISRSEFLQFLGKFNNTQWIQELFQSIDQNGDGSLDFVEFLTPFYF 83 (110)
Q Consensus 36 ~G~i~~~el~~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 83 (110)
++.|+.+.+...++.+.+....+.+-...+....+.+++.||+..+-.
T Consensus 4 ~~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~a~~~~~~~~e~L~~ll~ 51 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLPTIKTLWPQFAEQADKEGWPAARFLAAIAE 51 (269)
T ss_pred CCcccHHHHHHHHHHcCchHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 455677777777777777544443333344444566788888877643
No 138
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=46.34 E-value=28 Score=15.79 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=13.5
Q ss_pred CCceeHHHHHHHHHhhhc
Q 044607 69 DGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 69 ~g~i~~~ef~~~~~~~~~ 86 (110)
.|.|++++++.+......
T Consensus 2 ~~~i~~~~~~d~a~rv~~ 19 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNN 19 (33)
T ss_pred CceecHHHHHHHHHHHHH
Confidence 577888888888776654
No 139
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=45.62 E-value=34 Score=26.57 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=27.8
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHH
Q 044607 15 NATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFL 48 (110)
Q Consensus 15 ~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l 48 (110)
.+.+.....+.++|...|.|.+|.++-.|+-..-
T Consensus 188 elkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ 221 (625)
T KOG1707|consen 188 ELKPRCVKALKRIFKISDSDNDGALSDAELNDFQ 221 (625)
T ss_pred cccHHHHHHHHHHHhhhccccccccchhhhhHHH
Confidence 4566777889999999999999999988766543
No 140
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=44.90 E-value=39 Score=16.48 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=20.3
Q ss_pred HHHHHHHHhhcC-CC-CCCceeHHHHHHHHhc
Q 044607 21 QNLAKNFFNSMD-TN-GDGRISRSEFLQFLGK 50 (110)
Q Consensus 21 ~~~~~~~F~~~d-~~-~~G~i~~~el~~~l~~ 50 (110)
+..+..+|..+- ++ ....++..||..++..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 445666777664 33 3577889999888764
No 141
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=43.89 E-value=71 Score=28.22 Aligned_cols=54 Identities=20% Similarity=0.401 Sum_probs=39.0
Q ss_pred HHHHHHhhcCCCCCCceeHHHHHHHHhccCC-----cHHHHHHHHhcCCCCCCceeHHHH
Q 044607 23 LAKNFFNSMDTNGDGRISRSEFLQFLGKFNN-----TQWIQELFQSIDQNGDGSLDFVEF 77 (110)
Q Consensus 23 ~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-----~~~~~~~~~~~d~~~~g~i~~~ef 77 (110)
.+.......||+.+|+|+.++...++-.-.. ...++..|+.++. +..+|+.++.
T Consensus 2297 ~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~ 2355 (2399)
T KOG0040|consen 2297 EFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEEL 2355 (2399)
T ss_pred hHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHH
Confidence 5777888999999999999998876532222 3356778888887 4556666654
No 142
>PLN02952 phosphoinositide phospholipase C
Probab=43.23 E-value=1.4e+02 Score=23.48 Aligned_cols=60 Identities=15% Similarity=0.334 Sum_probs=38.9
Q ss_pred HHHHHHhhcCCCCCCceeHHHHHHHHhccCC-----cHHHHHHHHhc----C---CCCCCceeHHHHHHHHHh
Q 044607 23 LAKNFFNSMDTNGDGRISRSEFLQFLGKFNN-----TQWIQELFQSI----D---QNGDGSLDFVEFLTPFYF 83 (110)
Q Consensus 23 ~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-----~~~~~~~~~~~----d---~~~~g~i~~~ef~~~~~~ 83 (110)
++..+|..+-.++ +.++.++|..++..... ....+.++..+ . ......++++.|..++..
T Consensus 39 ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 39 DVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred HHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 3777888775443 68999999999986544 12344454432 1 112345899999988863
No 143
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=43.17 E-value=46 Score=17.55 Aligned_cols=29 Identities=7% Similarity=0.122 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHhhc
Q 044607 3 QEFHDSAIICYNNATGEVQNLAKNFFNSM 31 (110)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~ 31 (110)
+.|.+++.+.-+..++++++.+.++-+.|
T Consensus 33 ~DF~~Al~~~kpSVs~~dl~~ye~w~~~F 61 (62)
T PF09336_consen 33 EDFEEALKKVKPSVSQEDLKKYEEWTKEF 61 (62)
T ss_dssp HHHHHHHHTCGGSS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 45777777777777888877777665544
No 144
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=42.38 E-value=78 Score=24.49 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC
Q 044607 19 EVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN 53 (110)
Q Consensus 19 ~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~ 53 (110)
...++++.+....++|.+|.|+.++|..++..+..
T Consensus 54 ~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 54 FVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred hhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 34456778888899999999999999987665443
No 145
>PLN02230 phosphoinositide phospholipase C 4
Probab=40.59 E-value=1.6e+02 Score=23.13 Aligned_cols=60 Identities=7% Similarity=0.166 Sum_probs=40.4
Q ss_pred HHHHHHhhcCCCCCCceeHHHHHHHHhccCC------cHHHHHHHHhcC-------CCCCCceeHHHHHHHHHh
Q 044607 23 LAKNFFNSMDTNGDGRISRSEFLQFLGKFNN------TQWIQELFQSID-------QNGDGSLDFVEFLTPFYF 83 (110)
Q Consensus 23 ~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~------~~~~~~~~~~~d-------~~~~g~i~~~ef~~~~~~ 83 (110)
++..+|..+..++ +.++.++|..++..... ....+.++..+. .-..+.++++.|..++..
T Consensus 30 ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 30 DVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3777888885444 89999999999987552 123345554331 123456999999998865
No 146
>PF09808 SNAPc_SNAP43: Small nuclear RNA activating complex (SNAPc), subunit SNAP43; InterPro: IPR019188 Members of this family are part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. They bind to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Furthermore, they also recruit TBP and BRF2 to the U6 snRNA TATA box. SNAPc consists of at least four stably associated subunits, SNAP43, SNAP45, SNAP50, and SNAP190. None of the three small subunits can bind to the PSE on their own [].
Probab=39.60 E-value=22 Score=23.15 Aligned_cols=27 Identities=7% Similarity=0.135 Sum_probs=16.0
Q ss_pred HHHHHHHHhhcCCCCCCceeHHHHHHHHhccC
Q 044607 21 QNLAKNFFNSMDTNGDGRISRSEFLQFLGKFN 52 (110)
Q Consensus 21 ~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~ 52 (110)
...+...|... ..++.++|..+++..+
T Consensus 6 ~~~Ll~~F~~~-----~~~~F~~F~~~W~~~~ 32 (194)
T PF09808_consen 6 IDELLQRFQQA-----ESVRFEDFKRLWREMK 32 (194)
T ss_pred HHHHHHHHHHc-----CCCCHHHHHHHHHHCC
Confidence 34444455543 5566777777777654
No 147
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=38.10 E-value=79 Score=18.02 Aligned_cols=51 Identities=22% Similarity=0.105 Sum_probs=35.1
Q ss_pred CCceeHHHHHHHHhccCC---cHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 36 DGRISRSEFLQFLGKFNN---TQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 36 ~G~i~~~el~~~l~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
+-.|+..+|...+..... ..+...+=..+|...++.|+.-||-.+....+.
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFqP 73 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQP 73 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT--
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHHhh
Confidence 356899999988876555 334445666788889999999998877766654
No 148
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=37.67 E-value=63 Score=18.31 Aligned_cols=14 Identities=7% Similarity=0.060 Sum_probs=6.0
Q ss_pred cCHHHHHHHHHHHh
Q 044607 16 ATGEVQNLAKNFFN 29 (110)
Q Consensus 16 ~~~~~~~~~~~~F~ 29 (110)
.++.+...+...++
T Consensus 16 v~~~E~~~i~~~l~ 29 (104)
T cd07313 16 YDEEERAAIDRLLA 29 (104)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444433
No 149
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=37.55 E-value=45 Score=18.78 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=23.4
Q ss_pred HHHHHHHHHh-hcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHH
Q 044607 5 FHDSAIICYN-NATGEVQNLAKNFFNSMDTNGDGRISRSEFLQF 47 (110)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~ 47 (110)
++..+.+... =++++-+..=..+.+.++.+ +|.|+.+.+..+
T Consensus 4 l~~~I~~QvEfYFSd~NL~~D~fLr~~m~~~-~G~Vpl~~i~~F 46 (82)
T cd08028 4 LEKKIIRQIEYYFGDFNLPRDKFLKEQIKED-DGWVPMEVMLKF 46 (82)
T ss_pred HHHHHHHHHHhhcCHhhhccCHHHHHHHhcc-CCCEEhHHHhCC
Confidence 5555544432 24444443333344456655 899998877655
No 150
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=37.35 E-value=99 Score=23.56 Aligned_cols=51 Identities=10% Similarity=0.065 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC
Q 044607 3 QEFHDSAIICYNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN 53 (110)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~ 53 (110)
++|-..+...+-.+++-+...+.-+|+..|..+-=.|+..+|+.++..++.
T Consensus 109 semGPlLLsrlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~e 159 (502)
T PF05872_consen 109 SEMGPLLLSRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVSE 159 (502)
T ss_pred HhhchHHHHHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHh
Confidence 356666777777788888888999999999999888999999988876654
No 151
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=35.51 E-value=1.8e+02 Score=24.31 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=46.9
Q ss_pred HHHHHhhcCCCCCCceeHHHHHHHHhccCC-------------cHHHHHHHHhcCCC----CCCceeHHHHHHHHHhh
Q 044607 24 AKNFFNSMDTNGDGRISRSEFLQFLGKFNN-------------TQWIQELFQSIDQN----GDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 24 ~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-------------~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~~ 84 (110)
+..+|..+..++.-+++.++|.+++..-.. +..++.++..+..+ ..|.++-+.|+..+..-
T Consensus 223 ie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 223 IEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred HHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCC
Confidence 677899888888899999999999986433 22356788877654 56889999999887753
No 152
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=33.59 E-value=66 Score=15.83 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=29.9
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC-cHHHHHHHH
Q 044607 15 NATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN-TQWIQELFQ 62 (110)
Q Consensus 15 ~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-~~~~~~~~~ 62 (110)
.+++++...+..+|.. +.+.+..+...+-..+++ ...+...|.
T Consensus 6 ~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~l~~~qV~~WF~ 49 (59)
T cd00086 6 RFTPEQLEELEKEFEK-----NPYPSREEREELAKELGLTERQVKIWFQ 49 (59)
T ss_pred cCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 4667788888889987 456677777777777777 344554444
No 153
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=33.55 E-value=68 Score=15.91 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=29.7
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC-cHHHHHHHH
Q 044607 15 NATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN-TQWIQELFQ 62 (110)
Q Consensus 15 ~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-~~~~~~~~~ 62 (110)
.+++++...+...|.. +.+.+..+...+-..+++ ...+...|.
T Consensus 6 ~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l~~~~V~~WF~ 49 (57)
T PF00046_consen 6 RFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELGLTERQVKNWFQ 49 (57)
T ss_dssp SSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----hccccccccccccccccccccccccCHH
Confidence 4678888889889985 556677777777777777 334544443
No 154
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=33.52 E-value=96 Score=17.67 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHH-hhcCHHHHHHHHHHHhh
Q 044607 2 DQEFHDSAIICY-NNATGEVQNLAKNFFNS 30 (110)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~F~~ 30 (110)
.+.|++.+.... .+.+.++++.+..-|..
T Consensus 47 Ae~Fr~~V~~li~~~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 47 AEMFREDVQALIASEPTQEEVDDFLGGYDA 76 (85)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 467888887774 46777777777666654
No 155
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=33.14 E-value=15 Score=14.45 Aligned_cols=13 Identities=23% Similarity=0.917 Sum_probs=10.9
Q ss_pred cchhhhcchhhcc
Q 044607 95 GCNTWLQGLYFTC 107 (110)
Q Consensus 95 ~~~~~~~g~~~~~ 107 (110)
+|+-++|.-|-||
T Consensus 6 ~CknffWK~~tsC 18 (18)
T PF03002_consen 6 GCKNFFWKTFTSC 18 (18)
T ss_pred cccceeecccccC
Confidence 7888888888887
No 156
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=32.88 E-value=53 Score=17.66 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=18.7
Q ss_pred hcCCCCCCceeHHHHHHHHhc
Q 044607 30 SMDTNGDGRISRSEFLQFLGK 50 (110)
Q Consensus 30 ~~d~~~~G~i~~~el~~~l~~ 50 (110)
.+|+....+|+.+++..+++.
T Consensus 11 LYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred cccCCCceeEeHHHHHHHHHC
Confidence 578999999999999999885
No 157
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=31.83 E-value=1.3e+02 Score=18.54 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=31.1
Q ss_pred CCCceeHHHHHHHHhccCC------------cHHHHHHHHhcCCCCCC-ceeHHHHHHH
Q 044607 35 GDGRISRSEFLQFLGKFNN------------TQWIQELFQSIDQNGDG-SLDFVEFLTP 80 (110)
Q Consensus 35 ~~G~i~~~el~~~l~~~~~------------~~~~~~~~~~~d~~~~g-~i~~~ef~~~ 80 (110)
|+-.|+.+||..+...-.. +..++.+...+.....+ .++..|-+..
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 5677888899888875443 34567777777765555 3877776543
No 158
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=31.75 E-value=54 Score=18.38 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=15.3
Q ss_pred CCCceeHHHHHHHHHhhhc
Q 044607 68 GDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 68 ~~g~i~~~ef~~~~~~~~~ 86 (110)
.++.|+++||+.++.....
T Consensus 32 APmSIS~eeY~~LH~~fN~ 50 (81)
T PF10891_consen 32 APMSISFEEYIRLHIKFNE 50 (81)
T ss_pred cccEeeHHHHHHHHHHHHH
Confidence 5688999999998876654
No 159
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=31.65 E-value=60 Score=17.94 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=19.2
Q ss_pred CCCceeHHHHHHHHhccCC-cHHHHHHHHhcCC
Q 044607 35 GDGRISRSEFLQFLGKFNN-TQWIQELFQSIDQ 66 (110)
Q Consensus 35 ~~G~i~~~el~~~l~~~~~-~~~~~~~~~~~d~ 66 (110)
..|+|+..++..++..... ...+..++..+..
T Consensus 18 ~~G~lT~~eI~~~L~~~~~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDDLDPEQIDEIYDTLED 50 (82)
T ss_dssp HHSS-BHHHHHHH-S-S---HHHHHHHHHHHHT
T ss_pred hcCcCCHHHHHHHcCccCCCHHHHHHHHHHHHH
Confidence 4788999999999886555 4456666666543
No 160
>PLN02223 phosphoinositide phospholipase C
Probab=31.53 E-value=2e+02 Score=22.24 Aligned_cols=61 Identities=10% Similarity=0.132 Sum_probs=39.2
Q ss_pred HHHHHhhcCCCCCCceeHHHHHHHHhcc---CC-----cHHHHHHHHhcCC--------CCCCceeHHHHHHHHHhhh
Q 044607 24 AKNFFNSMDTNGDGRISRSEFLQFLGKF---NN-----TQWIQELFQSIDQ--------NGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 24 ~~~~F~~~d~~~~G~i~~~el~~~l~~~---~~-----~~~~~~~~~~~d~--------~~~g~i~~~ef~~~~~~~~ 85 (110)
++.+|..+- ++.|.++.+.+.+++.-+ .. ..+.+.+++.+-. ...+.++.+.|..++..-.
T Consensus 18 v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s~~ 94 (537)
T PLN02223 18 ILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFSTE 94 (537)
T ss_pred HHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcCcc
Confidence 667777763 677888999988888322 11 3344555554322 1235699999998886543
No 161
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.82 E-value=1.1e+02 Score=17.17 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=32.5
Q ss_pred CCCceeHHHHHHHHhccCCcHHHHHHHHhcCCCCCCceeHHHHHHHHHhh
Q 044607 35 GDGRISRSEFLQFLGKFNNTQWIQELFQSIDQNGDGSLDFVEFLTPFYFV 84 (110)
Q Consensus 35 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 84 (110)
++|.++.++...+-..-......+.+++.+-. .|.-.|..|+..+...
T Consensus 27 ~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~--RG~~AF~~F~~aL~~~ 74 (84)
T cd08326 27 SRGVFTPDMIEEIQAAGSRRDQARQLLIDLET--RGKQAFPAFLSALRET 74 (84)
T ss_pred hcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhc
Confidence 36788888777766544335556677777644 3566788898888764
No 162
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=28.77 E-value=1.5e+02 Score=18.60 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHhhcCCCCCCce
Q 044607 3 QEFHDSAIICYNNATGEVQNLAKNFFNSMDTNGDGRI 39 (110)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~d~~~~G~i 39 (110)
++++.++..... -+..++.++..+|+.++.+..|.-
T Consensus 32 peLk~~l~~H~~-eT~~qi~rLe~if~~lg~~~~~~~ 67 (147)
T cd07909 32 EELKEAFESHLE-ETEGQVERLEQIFESLGEKPEGKK 67 (147)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCccCc
Confidence 345555544443 345778889999999988766653
No 163
>PF13026 DUF3887: Protein of unknown function (DUF3887)
Probab=28.72 E-value=1.3e+02 Score=17.66 Aligned_cols=54 Identities=9% Similarity=0.083 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHH----HHhccCCcHHHHH
Q 044607 3 QEFHDSAIICYNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQ----FLGKFNNTQWIQE 59 (110)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~----~l~~~~~~~~~~~ 59 (110)
+++.+.+......+++... ..++..+|.+-...|+.+++.. .+...|....++.
T Consensus 5 Ekv~~~Aeevi~~~N~~dy---~~v~~~~d~~mk~aL~~e~~~~~~~~~l~k~G~f~~f~k 62 (101)
T PF13026_consen 5 EKVKQKAEEVIDLLNEKDY---DKVHEKYDEKMKNALTAEELKEKWGPVLEKAGAFESFEK 62 (101)
T ss_pred HHHHHHHHHHHHHHhHhhH---HHHHHHHhHHHHHhcCHHHHHHHHHHHHHhccccchhhh
Confidence 4566777666666666664 4445555556667777555554 5566665444443
No 164
>COG4709 Predicted membrane protein [Function unknown]
Probab=28.69 E-value=1.8e+02 Score=19.29 Aligned_cols=51 Identities=10% Similarity=0.084 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHh-hcCCCCCCceeHHHHHHHHhccCCcHH
Q 044607 3 QEFHDSAIICYNNATGEVQNLAKNFFN-SMDTNGDGRISRSEFLQFLGKFNNTQW 56 (110)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~F~-~~d~~~~G~i~~~el~~~l~~~~~~~~ 56 (110)
.||.+.+.+.+..+++++..+...-|+ +|+-....-.+.+|+.. .+|.+.+
T Consensus 4 ~efL~eL~~yL~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~---~LG~P~e 55 (195)
T COG4709 4 TEFLNELEQYLEGLPREERREIMYDYEEHFREAQEAGKSEEEIAK---DLGDPKE 55 (195)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHH---HhCCHHH
Confidence 689999999999999888766655555 44433322235565553 3455433
No 165
>PF12976 DUF3860: Domain of Unknown Function with PDB structure (DUF3860); InterPro: IPR024619 This protein family includes hypothetical protein (JCVI_PEP_1096688149193) whose crystal structure has been solved PDB:2OD5. The hypothetical protein is from an environmental metagenome (unidentified marine microbe).
Probab=28.22 E-value=1.2e+02 Score=17.04 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=29.9
Q ss_pred Ch-hHHHHHHHHHHhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHh
Q 044607 1 MD-QEFHDSAIICYNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLG 49 (110)
Q Consensus 1 m~-~~~~~~~~~~~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~ 49 (110)
|+ +.+++.+.+++.+-+....+....+-+.+|++. ..+++..++.
T Consensus 1 M~s~~LR~~Ir~~L~ER~~NT~EI~~~~~~~M~~~s----~Pe~~~NiL~ 46 (92)
T PF12976_consen 1 MDSQNLRDLIRNYLSERPRNTIEISAWLASQMDPNS----CPEDVTNILE 46 (92)
T ss_pred CchhHHHHHHHHHHhcCcccHHHHHHHHHhccCCCC----CHHHHHHHHh
Confidence 45 568888888888766666655555566677765 4566666655
No 166
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=27.28 E-value=1.3e+02 Score=17.16 Aligned_cols=49 Identities=8% Similarity=0.034 Sum_probs=34.3
Q ss_pred CCCceeHHHHHHHHhccCCcHHHHHHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 35 GDGRISRSEFLQFLGKFNNTQWIQELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 35 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
++|.|+.++...+...--..+.+++++... ...|....+-|..++..+.
T Consensus 26 ~n~~it~E~y~~V~a~~T~qdkmRkLld~v--~akG~~~k~~F~~iL~e~~ 74 (85)
T cd08324 26 KNDYFSTEDAEIVCACPTQPDKVRKILDLV--QSKGEEVSEYFLYLLQQLA 74 (85)
T ss_pred ccCCccHHHHHHHHhCCCCHHHHHHHHHHH--HhcCchHHHHHHHHHHHHH
Confidence 588999998887765444456677888874 3456677777887776654
No 167
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=26.27 E-value=1.1e+02 Score=20.37 Aligned_cols=23 Identities=17% Similarity=0.055 Sum_probs=17.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhh
Q 044607 8 SAIICYNNATGEVQNLAKNFFNS 30 (110)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~F~~ 30 (110)
++.+.|...++++..++...|+.
T Consensus 77 vLG~~wr~as~eQr~~F~~~F~~ 99 (211)
T PRK15117 77 VLGRYYKDATPAQREAYFAAFRE 99 (211)
T ss_pred HhhhhhhhCCHHHHHHHHHHHHH
Confidence 45566888888888888888874
No 168
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=25.90 E-value=1.1e+02 Score=15.85 Aligned_cols=46 Identities=13% Similarity=0.271 Sum_probs=31.2
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCCcHHHHHHHHhcC
Q 044607 16 ATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNNTQWIQELFQSID 65 (110)
Q Consensus 16 ~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~d 65 (110)
+++...+.++.+|.... +.+.+...++...+.-. ++.+..+++.+.
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~vs--~~tvt~ml~~L~ 47 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERLGVS--PPTVTEMLKRLA 47 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHHTS---HHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHHCCC--hHHHHHHHHHHH
Confidence 34555667888888765 67888999998765521 456666776664
No 169
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=25.63 E-value=2.3e+02 Score=21.83 Aligned_cols=81 Identities=14% Similarity=0.211 Sum_probs=46.9
Q ss_pred HHhhcCCCCCCceeHHHHHHHHhccCC---cHHHHHHHHh---cC-----CCCCCceeHHHHHHHHH--------hhhcc
Q 044607 27 FFNSMDTNGDGRISRSEFLQFLGKFNN---TQWIQELFQS---ID-----QNGDGSLDFVEFLTPFY--------FVSNW 87 (110)
Q Consensus 27 ~F~~~d~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~---~d-----~~~~g~i~~~ef~~~~~--------~~~~~ 87 (110)
+|..+--...+.++...|..++++.|+ ++-++.++.. .+ ....+.++.+-|-.++. .+..+
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lvSqALrkq 170 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLVSQALRKQ 170 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhHHHHHHhcC
Confidence 344333333689999999999999999 2223333222 22 23445577777766543 12223
Q ss_pred ccccCCccchhhhcchhhcc
Q 044607 88 RVKCDGLGCNTWLQGLYFTC 107 (110)
Q Consensus 88 ~~~~~~~~~~~~~~g~~~~~ 107 (110)
-..++-......++-+|.||
T Consensus 171 mVIPdw~~Fts~I~tIFEsc 190 (622)
T KOG0506|consen 171 MVIPDWEEFTSHIDTIFESC 190 (622)
T ss_pred ccCCcHHHHHHHHHHHHHHH
Confidence 34555445555677777777
No 170
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=25.60 E-value=1.2e+02 Score=19.97 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=16.8
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhh
Q 044607 8 SAIICYNNATGEVQNLAKNFFNS 30 (110)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~F~~ 30 (110)
++.+.|...++++.+++...|+.
T Consensus 73 vLG~~W~~~s~~Qr~~F~~~F~~ 95 (198)
T TIGR03481 73 TLGSSWTSLSPEQRRRFIGAFRE 95 (198)
T ss_pred HhhhhhhhCCHHHHHHHHHHHHH
Confidence 44555777888888888877774
No 171
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=24.45 E-value=1.4e+02 Score=16.62 Aligned_cols=50 Identities=14% Similarity=0.227 Sum_probs=29.9
Q ss_pred hhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhc-cCCcHHHHHHHHhcCC
Q 044607 14 NNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGK-FNNTQWIQELFQSIDQ 66 (110)
Q Consensus 14 ~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~-~~~~~~~~~~~~~~d~ 66 (110)
..++++++..++++|+.+=..+ .+.++-..-+.. .+..+.++.++..+..
T Consensus 26 ~Gfs~~~i~~l~~ayr~l~~~~---~~~~~a~~~l~~~~~~~~~v~~~~~Fi~~ 76 (83)
T PF13720_consen 26 RGFSKEEISALRRAYRILFRSG---LTLEEALEELEEEYPDSPEVREIVDFIRN 76 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHTSS---S-HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHhccCCHHHHHHHHHHHh
Confidence 4688899999999999654433 244444444443 4446667766665543
No 172
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=24.11 E-value=1.2e+02 Score=15.80 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=25.9
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCc----eeHHHHHHHHhccCCc
Q 044607 15 NATGEVQNLAKNFFNSMDTNGDGR----ISRSEFLQFLGKFNNT 54 (110)
Q Consensus 15 ~~~~~~~~~~~~~F~~~d~~~~G~----i~~~el~~~l~~~~~~ 54 (110)
.+++++...+...|.. .|+ .+..+...+...+|+.
T Consensus 7 ~Ft~~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lgl~ 45 (58)
T TIGR01565 7 KFTAEQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIGVT 45 (58)
T ss_pred CCCHHHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhCCC
Confidence 4788999999988886 444 5666777777777774
No 173
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=23.98 E-value=86 Score=17.34 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=17.2
Q ss_pred cCCCCCCceeHHHHHHHHHhhh
Q 044607 64 IDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 64 ~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
...+..|.|++..|++.++.+.
T Consensus 11 ~~~n~~G~iTl~gfLa~W~l~T 32 (76)
T PF08355_consen 11 VVTNEKGWITLQGFLAQWSLTT 32 (76)
T ss_pred eEEcCCCcCcHHHHHHHHHHHH
Confidence 4457889999999998887543
No 174
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=23.55 E-value=2.3e+02 Score=19.55 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=30.5
Q ss_pred CCCCceeHHHHHH---HHhccCCcHH-HHHHHHhcCCCCCCceeHHHHHHHHHhhhc
Q 044607 34 NGDGRISRSEFLQ---FLGKFNNTQW-IQELFQSIDQNGDGSLDFVEFLTPFYFVSN 86 (110)
Q Consensus 34 ~~~G~i~~~el~~---~l~~~~~~~~-~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (110)
.-||.|+..|... ++..+++... .+.....+........++.+|+.-+.....
T Consensus 67 kADG~Vse~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~ 123 (267)
T PRK09430 67 KAKGRVTEADIRIASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCG 123 (267)
T ss_pred hcCCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhc
Confidence 4589999998762 2233455332 222333343333444778888887776543
No 175
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=23.41 E-value=1.4e+02 Score=16.21 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=20.6
Q ss_pred hhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhcc
Q 044607 14 NNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKF 51 (110)
Q Consensus 14 ~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~ 51 (110)
..+++.....+...|+. =..+.|+.++|..-++..
T Consensus 20 ~~l~~~~~~~l~~~Y~~---~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 20 KHLPPSKMDLLQKHYEE---FKKKKISREEFVRKLRQI 54 (70)
T ss_pred HHCCHHHHHHHHHHHHH---HHHCCCCHHHHHHHHHHH
Confidence 34555554444444443 336778888888777654
No 176
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=23.27 E-value=1.1e+02 Score=15.97 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=15.0
Q ss_pred HHhhcCCCCCCceeHHHHHHH
Q 044607 27 FFNSMDTNGDGRISRSEFLQF 47 (110)
Q Consensus 27 ~F~~~d~~~~G~i~~~el~~~ 47 (110)
+...++.+++|.|+...+..+
T Consensus 20 L~~~~~~~~~g~Vpi~~i~~F 40 (61)
T PF05383_consen 20 LRSQMDSNPDGWVPISTILSF 40 (61)
T ss_dssp HHHHHCTTTTTBEEHHHHTTS
T ss_pred HHHHHHhcCCCcEeHHHHHch
Confidence 455677788899988866543
No 177
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=22.77 E-value=1.3e+02 Score=15.49 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=18.8
Q ss_pred hHHHHHHHHHH-hhcCHHHHHHHHHHHh
Q 044607 3 QEFHDSAIICY-NNATGEVQNLAKNFFN 29 (110)
Q Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~F~ 29 (110)
+++++.+...+ ..+++++++.+..+|.
T Consensus 3 ~~~~~~~~~~y~~~ft~~El~~i~~FY~ 30 (64)
T PF09832_consen 3 EKMIDQMAPIYAEHFTEEELDAILAFYE 30 (64)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHC
Confidence 45666666664 4788888888887777
No 178
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=22.47 E-value=92 Score=13.81 Aligned_cols=12 Identities=42% Similarity=0.545 Sum_probs=7.8
Q ss_pred CCceeHHHHHHH
Q 044607 36 DGRISRSEFLQF 47 (110)
Q Consensus 36 ~G~i~~~el~~~ 47 (110)
.|.|+.+|+...
T Consensus 14 ~G~IseeEy~~~ 25 (31)
T PF09851_consen 14 KGEISEEEYEQK 25 (31)
T ss_pred cCCCCHHHHHHH
Confidence 577777776654
No 179
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=22.34 E-value=2.4e+02 Score=20.03 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=33.5
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC-cHHHHHHHHh
Q 044607 15 NATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN-TQWIQELFQS 63 (110)
Q Consensus 15 ~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-~~~~~~~~~~ 63 (110)
.|++.++.++.+.|+. -.||+..|-.++=..+++ +.+|+-+|..
T Consensus 178 aFT~~Ql~~LEkrF~~-----QKYLS~~DR~~LA~~LgLTdaQVKtWfQN 222 (309)
T KOG0488|consen 178 AFSDHQLFELEKRFEK-----QKYLSVADRIELAASLGLTDAQVKTWFQN 222 (309)
T ss_pred hhhHHHHHHHHHHHHH-----hhcccHHHHHHHHHHcCCchhhHHHHHhh
Confidence 5888899999999986 678888888887788888 4455544443
No 180
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=22.30 E-value=1.6e+02 Score=16.54 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=21.2
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCceeHHHHHHH
Q 044607 16 ATGEVQNLAKNFFNSMDTNGDGRISRSEFLQF 47 (110)
Q Consensus 16 ~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~ 47 (110)
++++-+..=..+.+.++++.+|.|+.+-+..+
T Consensus 17 FSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F 48 (82)
T cd08032 17 FGDVNLHKDRFLREQIEKSRDGYIDISLLVSF 48 (82)
T ss_pred cchhhcccCHHHHHHhcCCCCCCEeHHHHhcc
Confidence 44444433344566788889999998866654
No 181
>PRK04158 transcriptional repressor CodY; Validated
Probab=22.08 E-value=2.8e+02 Score=19.27 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=22.8
Q ss_pred HHHHHHHH-HhhcCHHHHHHHHHHHhhcCCC
Q 044607 5 FHDSAIIC-YNNATGEVQNLAKNFFNSMDTN 34 (110)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~F~~~d~~ 34 (110)
.++++.+. ...++..+++.+.++|..+|.+
T Consensus 168 Rk~~~V~~Ai~tLSySEleAv~hIf~eL~g~ 198 (256)
T PRK04158 168 RKKAVVQMAINTLSYSELEAVEHIFEELDGN 198 (256)
T ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHhcCCC
Confidence 45555555 6788888999999999988765
No 182
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=21.80 E-value=2.5e+02 Score=18.57 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=33.7
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCceeHHHHHHHHhccCC-cHHHHHHHHh
Q 044607 15 NATGEVQNLAKNFFNSMDTNGDGRISRSEFLQFLGKFNN-TQWIQELFQS 63 (110)
Q Consensus 15 ~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~~l~~~~~-~~~~~~~~~~ 63 (110)
.++.+++..+...|. ++.+|.-.|-..+-..+++ ..+|+.+|..
T Consensus 108 ~ft~~Ql~~LE~~F~-----~~~Yvvg~eR~~LA~~L~LsetQVkvWFQN 152 (197)
T KOG0843|consen 108 AFTPEQLLKLEHAFE-----GNQYVVGAERKQLAQSLSLSETQVKVWFQN 152 (197)
T ss_pred ccCHHHHHHHHHHHh-----cCCeeechHHHHHHHHcCCChhHhhhhhhh
Confidence 478889888998997 4888888888888888888 4556655553
No 183
>COG5562 Phage envelope protein [General function prediction only]
Probab=21.66 E-value=72 Score=19.87 Aligned_cols=27 Identities=15% Similarity=0.253 Sum_probs=20.7
Q ss_pred HHHHhcCCCCCCceeHHHHHHHHHhhh
Q 044607 59 ELFQSIDQNGDGSLDFVEFLTPFYFVS 85 (110)
Q Consensus 59 ~~~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (110)
.+......+..|..+|+||++-+..-+
T Consensus 76 ~i~~al~~~qsGqttF~ef~~~la~AG 102 (137)
T COG5562 76 LIKTALRRHQSGQTTFEEFCSALAEAG 102 (137)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHhCC
Confidence 455556667789999999998887654
No 184
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=21.40 E-value=1.5e+02 Score=15.94 Aligned_cols=12 Identities=33% Similarity=0.617 Sum_probs=6.0
Q ss_pred eeHHHHHHHHhc
Q 044607 39 ISRSEFLQFLGK 50 (110)
Q Consensus 39 i~~~el~~~l~~ 50 (110)
|+..++..++++
T Consensus 30 vs~~el~a~lrk 41 (68)
T PF07308_consen 30 VSKAELSAWLRK 41 (68)
T ss_pred cCHHHHHHHHCC
Confidence 445555555443
No 185
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.97 E-value=1.7e+02 Score=16.31 Aligned_cols=14 Identities=7% Similarity=0.057 Sum_probs=6.0
Q ss_pred eHHHHHHHHhccCC
Q 044607 40 SRSEFLQFLGKFNN 53 (110)
Q Consensus 40 ~~~el~~~l~~~~~ 53 (110)
+...+..+++..+.
T Consensus 65 T~~~L~~aL~~~~~ 78 (86)
T cd08318 65 TPETLITALNAAGL 78 (86)
T ss_pred cHHHHHHHHHHcCc
Confidence 34444444444443
No 186
>PF02758 PYRIN: PAAD/DAPIN/Pyrin domain; InterPro: IPR004020 Pyrin domain was identified as putative protein-protein interaction domain at the N-terminal region of several proteins thought to function in apoptotic and inflammatory signalling pathways. Using secondary structure prediction and potential-based fold recognition methods, the PYRIN domain is predicted to be a member of the six-helix bundle death domain-fold superfamily that includes death domains (DDs), death effector domains (DEDs), and caspase recruitment domains (CARDs). Members of the death domain-fold superfamily are well established mediators of protein-protein interactions found in many proteins involved in apoptosis and inflammation, indicating further that the PYRIN domains serve a similar function. Comparison of a circular dichroism spectrum of the PYRIN domain of CARD7/DEFCAP/NAC/NALP1 with spectra of several proteins known to adopt the death domain-fold provides experimental support for the structure prediction [] It is found in interferon-inducible proteins, pyrin and myeloid cell nuclear differentiation antigen.; PDB: 2DO9_A 2YU0_A 2KN6_A 1UCP_A 2L6A_A 2KM6_A 1PN5_A 2DBG_A 3QF2_B 2HM2_Q.
Probab=20.59 E-value=1.7e+02 Score=16.12 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=27.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhhcCCCCCCceeHHHHHH
Q 044607 8 SAIICYNNATGEVQNLAKNFFNSMDTNGDGRISRSEFLQ 46 (110)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~F~~~d~~~~G~i~~~el~~ 46 (110)
.+...+..+++++...++.........+...|++.++..
T Consensus 4 ~Ll~~Le~L~~~efk~FK~~L~~~~~~~~~~Ip~~~le~ 42 (83)
T PF02758_consen 4 LLLWYLEELSEEEFKRFKWLLKEPVKEGFPPIPRGELEK 42 (83)
T ss_dssp HHHHHHHTS-HHHHHHHHHHHHSTSSTTTCSSSHCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhcchhhcCCCCCCHHHHhh
Confidence 455567788999988888777645567777787766553
No 187
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=20.57 E-value=1.9e+02 Score=18.26 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=20.1
Q ss_pred HHHHHHHhhcCCCCCCceeHHHHHHHHhc
Q 044607 22 NLAKNFFNSMDTNGDGRISRSEFLQFLGK 50 (110)
Q Consensus 22 ~~~~~~F~~~d~~~~G~i~~~el~~~l~~ 50 (110)
..+.......|..+-++++.++++.++-.
T Consensus 69 q~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 69 QQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 34444555667777788999999877653
No 188
>PLN02230 phosphoinositide phospholipase C 4
Probab=20.16 E-value=1.7e+02 Score=23.00 Aligned_cols=34 Identities=6% Similarity=0.026 Sum_probs=27.3
Q ss_pred CcHHHHHHHHhcCCCCCCceeHHHHHHHHHhhhcc
Q 044607 53 NTQWIQELFQSIDQNGDGSLDFVEFLTPFYFVSNW 87 (110)
Q Consensus 53 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 87 (110)
.++++..+|..+..++ +.++.++|..++...+..
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~ 60 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGG 60 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCC
Confidence 3678889999986444 799999999999987753
No 189
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=20.16 E-value=1.3e+02 Score=14.63 Aligned_cols=24 Identities=13% Similarity=0.021 Sum_probs=13.1
Q ss_pred HHHHHHHhccCC-cHHHHHHHHhcC
Q 044607 42 SEFLQFLGKFNN-TQWIQELFQSID 65 (110)
Q Consensus 42 ~el~~~l~~~~~-~~~~~~~~~~~d 65 (110)
+|...++..+|+ +.+++..+....
T Consensus 4 ~d~~~AL~~LGy~~~e~~~av~~~~ 28 (47)
T PF07499_consen 4 EDALEALISLGYSKAEAQKAVSKLL 28 (47)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 455666666666 444555555443
Done!