BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044609
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 79/205 (38%), Gaps = 7/205 (3%)
Query: 25 RRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84
++ GI V E ++ GAA+++ PN + LG+ + + P +R+ + +G
Sbjct: 43 KQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRSG 102
Query: 85 ATQ-ELSYAGKSGRIGSGLRSVHRQSXXXXXXXXXXXXTIQFSSKIAAIDSQTLNGSSAA 143
+ S A R GS V R ++QF ++ + +
Sbjct: 103 ENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEED----ADGV 158
Query: 144 IINLGDSTIIKAKVLIGCDGVHSMVAQW-LGLS-ESINSGRSSVRGLAVFPHGHGLNQDI 201
+ D + +LI DG HS + W LG + + +G + GL
Sbjct: 159 TVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQW 218
Query: 202 RQFVGVGFRAGFIPLNDRDVYWFLN 226
FVG G + +P++ Y+F +
Sbjct: 219 TTFVGEGKQVSLMPVSAGRFYFFFD 243
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 75/205 (36%), Gaps = 7/205 (3%)
Query: 25 RRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84
++ GI V E ++ GAA+++ PN LG + P +R + +G
Sbjct: 43 KQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCXAHLGXGDIXETFGGPLRRXAYRDFRSG 102
Query: 85 ATQ-ELSYAGKSGRIGSGLRSVHRQSXXXXXXXXXXXXTIQFSSKIAAIDSQTLNGSSAA 143
+ S A R GS V R ++QF ++ + +
Sbjct: 103 ENXTQFSLAPLIERTGSRPCPVSRAELQREXLDYWGRDSVQFGKRVTRCEED----ADGV 158
Query: 144 IINLGDSTIIKAKVLIGCDGVHSMVAQW-LGLS-ESINSGRSSVRGLAVFPHGHGLNQDI 201
+ D + +LI DG HS + W LG + + +G + GL
Sbjct: 159 TVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQW 218
Query: 202 RQFVGVGFRAGFIPLNDRDVYWFLN 226
FVG G R P++ Y+F +
Sbjct: 219 TTFVGEGKRVSLXPVSAGRFYFFFD 243
>pdb|3RIU|C Chain C, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
Length = 269
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 199 QDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSP 230
Q + + + V FRA + L D+DVY F + YSP
Sbjct: 59 QRLNKLIAVNFRAVALELRDQDVYQFRSSYSP 90
>pdb|3AXJ|B Chain B, High Resolution Crystal Structure Of C3po
Length = 298
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 199 QDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSP 230
Q + + + V FRA + L D+DVY F + YSP
Sbjct: 88 QRLNKLIAVNFRAVALELRDQDVYQFRSSYSP 119
>pdb|3T6A|A Chain A, Structure Of The C-Terminal Domain Of Bcar3
pdb|3T6A|B Chain B, Structure Of The C-Terminal Domain Of Bcar3
pdb|3T6A|C Chain C, Structure Of The C-Terminal Domain Of Bcar3
pdb|3T6A|D Chain D, Structure Of The C-Terminal Domain Of Bcar3
Length = 333
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 124 QFSSKIAAIDSQTLNGS----SAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESI- 178
+F SK +++ L + + + D +I VL + VA+ LG+SE +
Sbjct: 19 EFESKFLPPENKPLETALLKRAKELFTNNDPKVIAQHVL----SMDCRVARILGVSEEMR 74
Query: 179 -NSGRSSVRGLAVFPHGHGLNQDI 201
N G SS L PHGH L DI
Sbjct: 75 RNMGVSSGLELITLPHGHQLRLDI 98
>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 665
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 125 FSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLS 175
F S + + + N G+ + K +IGCDG HS V + LG
Sbjct: 189 FRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFE 239
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 125 FSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLS 175
F S + + + N G+ + K +IGCDG HS V + LG
Sbjct: 188 FHSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFE 238
>pdb|1KHI|A Chain A, Crystal Structure Of Hex1
Length = 176
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 171 WLGLSESINSGRSSVRGLAVFPHGHGLNQDIR 202
W L ++ SGR SVR L V HG + D++
Sbjct: 138 WNRLQKAFESGRGSVRVLVVSDHGREMAVDMK 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,626,246
Number of Sequences: 62578
Number of extensions: 199716
Number of successful extensions: 423
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 9
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)