Query 044609
Match_columns 232
No_of_seqs 173 out of 1902
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 05:00:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0654 UbiH 2-polyprenyl-6-me 100.0 2.9E-30 6.4E-35 207.0 25.7 209 5-221 2-217 (387)
2 PRK06753 hypothetical protein; 100.0 4.6E-30 1E-34 205.4 25.8 211 7-228 2-214 (373)
3 PRK08013 oxidoreductase; Provi 100.0 9.1E-30 2E-34 205.1 25.4 208 4-220 2-221 (400)
4 PRK06617 2-octaprenyl-6-methox 100.0 1.2E-29 2.6E-34 202.7 25.8 204 6-220 2-212 (374)
5 TIGR01989 COQ6 Ubiquinone bios 100.0 1.4E-29 3E-34 206.0 25.1 216 6-226 1-243 (437)
6 PRK07045 putative monooxygenas 100.0 3.2E-29 6.9E-34 201.5 26.7 221 1-228 1-228 (388)
7 PRK07588 hypothetical protein; 100.0 4.1E-29 8.9E-34 201.0 25.9 216 7-228 2-222 (391)
8 PRK05868 hypothetical protein; 100.0 1.2E-28 2.5E-33 196.6 27.7 215 7-227 3-223 (372)
9 PRK06475 salicylate hydroxylas 100.0 6E-29 1.3E-33 200.4 25.8 218 6-227 3-235 (400)
10 PRK08850 2-octaprenyl-6-methox 100.0 1.2E-28 2.6E-33 199.1 25.3 210 4-221 3-222 (405)
11 PRK08773 2-octaprenyl-3-methyl 100.0 1.4E-28 3.1E-33 198.0 25.6 218 1-226 1-228 (392)
12 PRK09126 hypothetical protein; 100.0 9.3E-29 2E-33 199.2 23.7 217 3-227 1-227 (392)
13 PRK07494 2-octaprenyl-6-methox 100.0 1.2E-28 2.7E-33 198.2 24.4 216 1-223 3-223 (388)
14 PRK06183 mhpA 3-(3-hydroxyphen 100.0 2E-28 4.3E-33 204.0 25.8 220 3-227 8-236 (538)
15 PRK08163 salicylate hydroxylas 100.0 3.2E-28 6.8E-33 196.3 26.3 218 1-224 1-226 (396)
16 PRK07364 2-octaprenyl-6-methox 100.0 2.4E-28 5.2E-33 198.2 25.4 214 4-225 17-239 (415)
17 PRK08244 hypothetical protein; 100.0 2.1E-28 4.5E-33 202.1 25.4 211 5-226 2-218 (493)
18 PRK06847 hypothetical protein; 100.0 2.9E-28 6.4E-33 195.2 25.4 219 1-228 1-224 (375)
19 PRK07190 hypothetical protein; 100.0 3.8E-28 8.3E-33 199.0 25.6 219 1-225 1-225 (487)
20 PRK06184 hypothetical protein; 100.0 3E-28 6.4E-33 201.6 24.7 214 4-224 2-227 (502)
21 PRK05714 2-octaprenyl-3-methyl 100.0 2.8E-28 6.1E-33 197.1 23.3 217 5-229 2-232 (405)
22 KOG2614 Kynurenine 3-monooxyge 100.0 6.1E-29 1.3E-33 191.0 18.0 207 5-220 2-215 (420)
23 PRK07333 2-octaprenyl-6-methox 100.0 1.1E-27 2.4E-32 193.6 25.3 213 6-224 2-224 (403)
24 PRK08849 2-octaprenyl-3-methyl 100.0 1.4E-27 3E-32 191.6 25.1 208 5-221 3-221 (384)
25 PTZ00367 squalene epoxidase; P 100.0 1.6E-27 3.5E-32 197.1 25.7 219 4-230 32-283 (567)
26 TIGR03219 salicylate_mono sali 100.0 2.6E-27 5.5E-32 191.9 25.2 214 7-227 2-236 (414)
27 TIGR01988 Ubi-OHases Ubiquinon 100.0 2.6E-27 5.7E-32 190.4 24.9 213 7-227 1-223 (385)
28 PRK07538 hypothetical protein; 100.0 7E-27 1.5E-31 189.2 26.6 214 7-228 2-235 (413)
29 TIGR01984 UbiH 2-polyprenyl-6- 100.0 2.3E-27 4.9E-32 190.5 23.6 211 7-225 1-221 (382)
30 PRK07236 hypothetical protein; 100.0 4.4E-27 9.5E-32 188.9 25.1 201 3-218 4-212 (386)
31 PRK06185 hypothetical protein; 100.0 4.3E-27 9.3E-32 190.4 24.8 220 1-230 2-229 (407)
32 PF01494 FAD_binding_3: FAD bi 100.0 1.9E-27 4.2E-32 189.0 22.1 210 5-218 1-227 (356)
33 PRK08294 phenol 2-monooxygenas 100.0 7.8E-27 1.7E-31 196.4 25.9 221 4-225 31-272 (634)
34 PRK08020 ubiF 2-octaprenyl-3-m 100.0 9.3E-27 2E-31 187.5 25.1 212 1-221 1-223 (391)
35 PRK05732 2-octaprenyl-6-methox 100.0 1.4E-26 2.9E-31 186.8 24.7 216 3-226 1-228 (395)
36 PLN02927 antheraxanthin epoxid 100.0 5.3E-26 1.1E-30 189.3 27.0 223 4-230 80-313 (668)
37 PRK06996 hypothetical protein; 100.0 1.9E-26 4.1E-31 185.8 23.6 209 1-220 7-228 (398)
38 PLN02985 squalene monooxygenas 100.0 2.7E-26 5.8E-31 188.9 24.7 218 3-228 41-268 (514)
39 PRK07608 ubiquinone biosynthes 100.0 4.4E-26 9.5E-31 183.4 25.0 213 4-226 4-226 (388)
40 PRK08243 4-hydroxybenzoate 3-m 100.0 4.9E-26 1.1E-30 183.1 24.0 164 5-175 2-172 (392)
41 PRK08132 FAD-dependent oxidore 100.0 1.2E-25 2.6E-30 187.8 26.6 215 4-222 22-244 (547)
42 PRK06126 hypothetical protein; 100.0 5.8E-26 1.3E-30 189.8 24.7 220 1-224 3-251 (545)
43 TIGR02360 pbenz_hydroxyl 4-hyd 99.9 3E-25 6.6E-30 178.2 23.9 213 5-227 2-225 (390)
44 PRK06834 hypothetical protein; 99.9 3.9E-25 8.5E-30 181.5 24.7 202 5-221 3-209 (488)
45 KOG1298 Squalene monooxygenase 99.9 8.7E-25 1.9E-29 166.1 16.9 220 3-229 43-270 (509)
46 TIGR02032 GG-red-SF geranylger 99.9 1.2E-23 2.6E-28 163.2 23.6 206 6-227 1-213 (295)
47 COG0644 FixC Dehydrogenases (f 99.9 3.3E-23 7.2E-28 166.6 23.6 208 3-228 1-217 (396)
48 PLN00093 geranylgeranyl diphos 99.9 6.8E-22 1.5E-26 160.6 23.2 210 1-225 35-261 (450)
49 PRK11445 putative oxidoreducta 99.9 2.8E-22 6.1E-27 158.9 20.0 156 6-175 2-166 (351)
50 TIGR02023 BchP-ChlP geranylger 99.9 2.4E-21 5.3E-26 155.7 22.7 196 6-219 1-213 (388)
51 PRK10015 oxidoreductase; Provi 99.9 3.9E-21 8.5E-26 155.8 20.4 169 1-175 1-173 (429)
52 PRK10157 putative oxidoreducta 99.9 1.5E-20 3.3E-25 152.5 23.1 175 1-185 1-183 (428)
53 TIGR02028 ChlP geranylgeranyl 99.9 3.1E-20 6.8E-25 149.4 23.5 205 6-225 1-222 (398)
54 KOG3855 Monooxygenase involved 99.9 1.5E-20 3.2E-25 144.5 16.5 219 4-229 35-279 (481)
55 PLN02463 lycopene beta cyclase 99.9 2.4E-19 5.2E-24 145.2 20.9 196 5-226 28-244 (447)
56 PF04820 Trp_halogenase: Trypt 99.8 1.7E-19 3.7E-24 146.8 18.9 216 7-229 1-276 (454)
57 PLN02697 lycopene epsilon cycl 99.8 1.2E-18 2.5E-23 143.3 22.7 196 5-226 108-322 (529)
58 PF05834 Lycopene_cycl: Lycope 99.8 1E-17 2.2E-22 133.8 22.4 190 7-227 1-203 (374)
59 TIGR01790 carotene-cycl lycope 99.8 2.5E-17 5.4E-22 132.7 22.0 143 7-170 1-145 (388)
60 PRK04176 ribulose-1,5-biphosph 99.8 6.7E-18 1.4E-22 127.6 13.5 137 4-173 24-180 (257)
61 COG2081 Predicted flavoprotein 99.8 1.4E-17 3E-22 128.6 14.0 147 3-167 1-168 (408)
62 PRK08255 salicylyl-CoA 5-hydro 99.8 2.2E-17 4.9E-22 142.5 16.6 141 7-173 2-148 (765)
63 TIGR00292 thiazole biosynthesi 99.7 8.6E-17 1.9E-21 121.2 14.6 137 4-172 20-176 (254)
64 TIGR01789 lycopene_cycl lycope 99.7 6.9E-16 1.5E-20 122.9 17.8 185 7-230 1-200 (370)
65 PRK11259 solA N-methyltryptoph 99.7 7.1E-16 1.5E-20 123.8 16.6 61 102-167 143-205 (376)
66 PRK13369 glycerol-3-phosphate 99.7 2.9E-15 6.2E-20 124.2 19.6 167 4-174 5-225 (502)
67 PRK12266 glpD glycerol-3-phosp 99.7 1.3E-15 2.8E-20 126.2 17.4 170 1-174 1-226 (508)
68 PRK11728 hydroxyglutarate oxid 99.7 3.9E-15 8.4E-20 120.1 19.3 166 5-175 2-214 (393)
69 PF01266 DAO: FAD dependent ox 99.7 2.2E-15 4.7E-20 120.0 17.6 74 100-178 139-216 (358)
70 COG0579 Predicted dehydrogenas 99.7 1E-15 2.2E-20 121.6 14.7 171 3-176 1-222 (429)
71 TIGR01377 soxA_mon sarcosine o 99.7 4.9E-15 1.1E-19 119.1 18.6 76 100-180 137-215 (380)
72 PF03486 HI0933_like: HI0933-l 99.7 8.6E-16 1.9E-20 122.9 11.9 142 6-166 1-166 (409)
73 COG1635 THI4 Ribulose 1,5-bisp 99.7 6E-15 1.3E-19 105.0 14.3 136 5-172 30-184 (262)
74 PF01946 Thi4: Thi4 family; PD 99.7 2.1E-15 4.5E-20 107.8 11.9 133 4-168 16-167 (230)
75 TIGR01373 soxB sarcosine oxida 99.7 5.5E-15 1.2E-19 119.9 15.5 114 103-224 178-294 (407)
76 COG0578 GlpA Glycerol-3-phosph 99.6 1.7E-14 3.8E-19 117.0 16.9 216 1-220 8-282 (532)
77 KOG2820 FAD-dependent oxidored 99.6 5.3E-15 1.2E-19 111.5 12.2 175 4-179 6-227 (399)
78 PRK12409 D-amino acid dehydrog 99.6 5.9E-14 1.3E-18 114.0 18.3 70 104-177 193-270 (410)
79 PRK05192 tRNA uridine 5-carbox 99.6 7.4E-15 1.6E-19 121.4 12.6 148 3-167 2-158 (618)
80 PRK05257 malate:quinone oxidor 99.6 4E-14 8.6E-19 116.5 16.8 73 100-175 175-256 (494)
81 PLN02464 glycerol-3-phosphate 99.6 6.9E-14 1.5E-18 118.3 17.4 70 103-173 227-304 (627)
82 TIGR01320 mal_quin_oxido malat 99.6 4.7E-14 1E-18 115.9 14.8 75 99-176 169-251 (483)
83 PRK11101 glpA sn-glycerol-3-ph 99.6 2.8E-14 6.1E-19 119.2 12.9 173 2-178 3-224 (546)
84 PTZ00383 malate:quinone oxidor 99.6 4.3E-14 9.3E-19 116.0 13.3 68 103-174 206-282 (497)
85 COG2072 TrkA Predicted flavopr 99.6 1E-13 2.2E-18 112.8 15.2 137 2-166 5-144 (443)
86 PLN02172 flavin-containing mon 99.5 3.8E-14 8.2E-19 115.7 10.4 151 5-166 10-173 (461)
87 PRK00711 D-amino acid dehydrog 99.5 5.1E-13 1.1E-17 108.7 16.4 73 103-179 196-271 (416)
88 PRK13339 malate:quinone oxidor 99.5 3.3E-13 7E-18 110.5 15.1 74 99-175 175-257 (497)
89 PF13738 Pyr_redox_3: Pyridine 99.5 6.4E-15 1.4E-19 108.2 4.7 136 9-167 1-139 (203)
90 PRK01747 mnmC bifunctional tRN 99.5 2.3E-13 4.9E-18 116.6 13.9 158 6-167 261-464 (662)
91 TIGR03329 Phn_aa_oxid putative 99.5 9E-14 1.9E-18 114.3 10.8 62 100-167 175-238 (460)
92 KOG1399 Flavin-containing mono 99.5 1.6E-13 3.5E-18 110.4 10.8 135 3-166 4-153 (448)
93 PF01134 GIDA: Glucose inhibit 99.5 1.4E-13 3.1E-18 108.3 9.9 143 7-165 1-151 (392)
94 TIGR03364 HpnW_proposed FAD de 99.5 1.6E-12 3.5E-17 104.0 16.0 58 101-167 138-198 (365)
95 PF12831 FAD_oxidored: FAD dep 99.5 2.5E-14 5.4E-19 116.3 5.4 148 7-174 1-157 (428)
96 COG0665 DadA Glycine/D-amino a 99.5 2.3E-12 5E-17 103.9 16.7 122 99-225 147-273 (387)
97 COG0492 TrxB Thioredoxin reduc 99.5 2.1E-12 4.5E-17 99.6 13.7 113 3-167 1-116 (305)
98 PLN02661 Putative thiazole syn 99.5 1.7E-12 3.6E-17 100.9 12.9 129 4-166 91-244 (357)
99 KOG2415 Electron transfer flav 99.4 2.7E-12 5.8E-17 99.8 13.1 158 4-170 75-260 (621)
100 TIGR01292 TRX_reduct thioredox 99.4 3.8E-12 8.2E-17 99.1 12.8 111 6-167 1-113 (300)
101 TIGR00275 flavoprotein, HI0933 99.4 5.4E-12 1.2E-16 101.9 11.7 157 9-175 1-180 (400)
102 TIGR00136 gidA glucose-inhibit 99.4 5.2E-12 1.1E-16 104.6 11.6 145 6-166 1-154 (617)
103 PRK08274 tricarballylate dehyd 99.4 4.1E-12 8.9E-17 104.8 11.0 36 4-39 3-38 (466)
104 PF00743 FMO-like: Flavin-bind 99.4 1.2E-12 2.7E-17 108.4 7.7 138 6-166 2-150 (531)
105 PF00890 FAD_binding_2: FAD bi 99.4 4.8E-12 1E-16 103.1 10.7 59 106-167 139-204 (417)
106 PRK06069 sdhA succinate dehydr 99.4 1.4E-11 3E-16 104.0 13.7 41 1-41 1-44 (577)
107 PRK05945 sdhA succinate dehydr 99.4 1.5E-11 3.1E-16 103.8 13.3 38 3-40 1-40 (575)
108 PRK06452 sdhA succinate dehydr 99.4 1.2E-11 2.6E-16 104.0 12.5 40 1-40 1-40 (566)
109 PRK07804 L-aspartate oxidase; 99.4 1.8E-11 3.8E-16 102.5 13.3 37 4-40 15-51 (541)
110 PRK06481 fumarate reductase fl 99.4 3.3E-11 7.1E-16 100.2 14.7 38 4-41 60-97 (506)
111 TIGR01813 flavo_cyto_c flavocy 99.4 1.5E-11 3.2E-16 100.8 12.5 34 7-40 1-35 (439)
112 PRK15317 alkyl hydroperoxide r 99.4 1.8E-11 4E-16 102.0 13.3 110 5-166 211-322 (517)
113 PRK07121 hypothetical protein; 99.4 3E-11 6.5E-16 100.3 14.4 37 4-40 19-55 (492)
114 TIGR01812 sdhA_frdA_Gneg succi 99.3 2.8E-11 6E-16 102.1 13.2 34 7-40 1-34 (566)
115 PRK06175 L-aspartate oxidase; 99.3 1E-11 2.2E-16 101.2 10.2 38 1-40 1-38 (433)
116 PRK07573 sdhA succinate dehydr 99.3 3.1E-11 6.8E-16 102.6 13.3 37 4-40 34-70 (640)
117 KOG2844 Dimethylglycine dehydr 99.3 5.3E-11 1.2E-15 97.5 13.6 92 99-194 178-272 (856)
118 PRK07057 sdhA succinate dehydr 99.3 5.5E-11 1.2E-15 100.4 14.2 39 1-39 8-46 (591)
119 PRK07803 sdhA succinate dehydr 99.3 4.4E-11 9.6E-16 101.6 13.5 40 1-40 4-43 (626)
120 TIGR03143 AhpF_homolog putativ 99.3 3.2E-11 6.8E-16 101.3 12.4 113 1-167 1-115 (555)
121 PRK09231 fumarate reductase fl 99.3 4.7E-11 1E-15 100.6 13.1 38 3-40 2-41 (582)
122 PRK08626 fumarate reductase fl 99.3 3.3E-11 7.1E-16 102.7 12.1 41 1-41 1-41 (657)
123 TIGR00551 nadB L-aspartate oxi 99.3 3.6E-11 7.8E-16 99.6 12.1 59 108-169 128-192 (488)
124 TIGR03140 AhpF alkyl hydropero 99.3 4.8E-11 1E-15 99.5 12.7 110 5-166 212-323 (515)
125 PF06039 Mqo: Malate:quinone o 99.3 6.1E-11 1.3E-15 94.1 11.8 70 103-175 176-254 (488)
126 TIGR01176 fum_red_Fp fumarate 99.3 1E-10 2.2E-15 98.5 14.0 154 4-168 2-197 (580)
127 PRK09078 sdhA succinate dehydr 99.3 1.2E-10 2.5E-15 98.6 14.4 37 4-40 11-47 (598)
128 COG3380 Predicted NAD/FAD-depe 99.3 1.3E-11 2.9E-16 90.8 7.4 139 7-162 3-156 (331)
129 PRK08401 L-aspartate oxidase; 99.3 6.3E-11 1.4E-15 97.6 12.1 34 6-39 2-35 (466)
130 PRK07843 3-ketosteroid-delta-1 99.3 5.6E-11 1.2E-15 99.8 12.0 41 1-41 3-43 (557)
131 PTZ00139 Succinate dehydrogena 99.3 9.2E-11 2E-15 99.4 13.2 37 4-40 28-64 (617)
132 PRK06854 adenylylsulfate reduc 99.3 2.5E-11 5.5E-16 102.7 9.4 36 5-40 11-48 (608)
133 PRK12834 putative FAD-binding 99.3 2.4E-11 5.2E-16 102.0 9.2 37 1-38 1-37 (549)
134 PRK05249 soluble pyridine nucl 99.3 1.8E-11 3.9E-16 100.9 7.8 41 1-41 1-41 (461)
135 PLN02568 polyamine oxidase 99.2 3.5E-10 7.6E-15 94.3 15.1 54 107-164 241-294 (539)
136 PLN00128 Succinate dehydrogena 99.2 1.8E-10 4E-15 97.7 13.5 37 5-41 50-86 (635)
137 PRK08958 sdhA succinate dehydr 99.2 2.1E-10 4.6E-15 96.8 13.8 37 4-40 6-42 (588)
138 PRK08205 sdhA succinate dehydr 99.2 2.2E-10 4.9E-15 96.7 13.8 39 1-40 1-39 (583)
139 PRK08275 putative oxidoreducta 99.2 2.4E-10 5.1E-15 96.1 13.9 37 4-40 8-46 (554)
140 PRK08071 L-aspartate oxidase; 99.2 1.4E-10 3.1E-15 96.4 12.1 152 4-167 2-191 (510)
141 PRK06263 sdhA succinate dehydr 99.2 3E-10 6.4E-15 95.4 13.6 35 4-39 6-40 (543)
142 TIGR02730 carot_isom carotene 99.2 1.4E-10 3.1E-15 96.3 11.7 63 108-173 229-293 (493)
143 KOG0042 Glycerol-3-phosphate d 99.2 1.9E-11 4.2E-16 97.8 5.5 58 2-59 64-122 (680)
144 PRK10262 thioredoxin reductase 99.2 6.5E-10 1.4E-14 87.5 12.9 35 3-37 4-38 (321)
145 PRK08641 sdhA succinate dehydr 99.2 3.8E-10 8.3E-15 95.4 12.2 37 4-40 2-38 (589)
146 PLN02815 L-aspartate oxidase 99.2 4.4E-10 9.6E-15 94.7 12.4 37 4-41 28-64 (594)
147 PRK14694 putative mercuric red 99.2 2.3E-10 5E-15 94.5 10.6 38 1-38 2-39 (468)
148 PF13454 NAD_binding_9: FAD-NA 99.2 6.3E-10 1.4E-14 78.1 10.9 135 9-164 1-155 (156)
149 PRK08010 pyridine nucleotide-d 99.2 2.8E-10 6.1E-15 93.3 10.4 36 4-39 2-37 (441)
150 PRK09077 L-aspartate oxidase; 99.2 5.9E-10 1.3E-14 93.4 12.4 36 4-40 7-42 (536)
151 PRK06467 dihydrolipoamide dehy 99.2 2.4E-10 5.1E-15 94.4 9.8 37 4-40 3-39 (471)
152 PRK07395 L-aspartate oxidase; 99.1 5.8E-10 1.2E-14 93.5 11.8 37 4-41 8-44 (553)
153 PTZ00363 rab-GDP dissociation 99.1 1.1E-08 2.4E-13 83.3 18.9 42 4-45 3-44 (443)
154 TIGR01424 gluta_reduc_2 glutat 99.1 1.3E-10 2.7E-15 95.4 7.7 33 5-37 2-34 (446)
155 PRK11883 protoporphyrinogen ox 99.1 3.6E-09 7.7E-14 87.2 16.2 54 109-166 222-275 (451)
156 PRK05976 dihydrolipoamide dehy 99.1 3E-10 6.5E-15 93.9 9.9 34 4-37 3-36 (472)
157 TIGR00562 proto_IX_ox protopor 99.1 1.7E-09 3.7E-14 89.3 14.2 60 6-65 3-81 (462)
158 KOG2853 Possible oxidoreductas 99.1 1E-09 2.2E-14 83.7 11.6 169 6-175 87-330 (509)
159 PTZ00306 NADH-dependent fumara 99.1 1.8E-09 4E-14 97.6 15.1 39 3-41 407-445 (1167)
160 PRK07512 L-aspartate oxidase; 99.1 6E-10 1.3E-14 92.8 11.2 36 2-39 6-41 (513)
161 PRK06370 mercuric reductase; V 99.1 2.1E-10 4.5E-15 94.6 8.3 38 1-38 1-38 (463)
162 TIGR02734 crtI_fam phytoene de 99.1 9.9E-10 2.2E-14 91.6 12.4 63 108-173 219-283 (502)
163 PRK06115 dihydrolipoamide dehy 99.1 1.6E-10 3.4E-15 95.3 7.5 37 4-40 2-38 (466)
164 PRK12842 putative succinate de 99.1 1.1E-09 2.4E-14 92.6 12.5 39 3-41 7-45 (574)
165 PRK06134 putative FAD-binding 99.1 1.9E-10 4.1E-15 97.1 7.9 37 4-40 11-47 (581)
166 PRK06416 dihydrolipoamide dehy 99.1 1.4E-09 3E-14 89.9 12.5 35 4-38 3-37 (462)
167 COG1232 HemY Protoporphyrinoge 99.1 4.3E-09 9.4E-14 84.8 14.9 61 7-67 2-79 (444)
168 TIGR02731 phytoene_desat phyto 99.1 5.4E-09 1.2E-13 86.1 15.9 59 7-65 1-75 (453)
169 PRK06116 glutathione reductase 99.1 2.3E-10 5E-15 94.1 7.5 34 4-37 3-36 (450)
170 TIGR01811 sdhA_Bsu succinate d 99.1 1.7E-09 3.7E-14 91.6 12.8 32 8-39 1-32 (603)
171 PRK09897 hypothetical protein; 99.1 9.8E-10 2.1E-14 91.1 11.0 34 7-40 3-38 (534)
172 PRK06327 dihydrolipoamide dehy 99.1 8.8E-10 1.9E-14 91.2 10.8 35 1-36 1-35 (475)
173 PRK12416 protoporphyrinogen ox 99.1 9E-09 2E-13 85.1 16.0 60 108-172 226-285 (463)
174 PRK12844 3-ketosteroid-delta-1 99.1 2.6E-09 5.6E-14 89.8 12.8 37 4-40 5-41 (557)
175 KOG2665 Predicted FAD-dependen 99.1 2.4E-09 5.1E-14 80.9 11.1 169 4-175 47-267 (453)
176 PLN02612 phytoene desaturase 99.1 1.2E-08 2.6E-13 86.0 16.4 61 5-65 93-169 (567)
177 PF07992 Pyr_redox_2: Pyridine 99.1 2.6E-10 5.7E-15 83.5 5.8 33 7-39 1-33 (201)
178 PRK12845 3-ketosteroid-delta-1 99.1 2.7E-09 6E-14 89.6 12.3 37 4-41 15-51 (564)
179 PF13450 NAD_binding_8: NAD(P) 99.1 5E-10 1.1E-14 66.8 5.7 34 10-43 1-34 (68)
180 PLN02507 glutathione reductase 99.1 8.5E-10 1.8E-14 91.6 8.9 33 5-37 25-57 (499)
181 PRK05335 tRNA (uracil-5-)-meth 99.0 1.3E-09 2.9E-14 87.0 9.4 111 6-132 3-125 (436)
182 PRK12839 hypothetical protein; 99.0 2.7E-09 5.8E-14 89.9 11.7 37 4-40 7-43 (572)
183 PRK12835 3-ketosteroid-delta-1 99.0 7.6E-09 1.6E-13 87.4 14.4 37 5-41 11-47 (584)
184 PRK13748 putative mercuric red 99.0 1.8E-09 3.9E-14 91.3 10.3 34 4-37 97-130 (561)
185 COG1053 SdhA Succinate dehydro 99.0 1.4E-09 3E-14 90.7 9.3 41 1-41 2-42 (562)
186 TIGR02485 CobZ_N-term precorri 99.0 2.5E-09 5.4E-14 87.5 10.6 61 108-169 123-186 (432)
187 TIGR01421 gluta_reduc_1 glutat 99.0 5.4E-10 1.2E-14 91.7 6.7 34 4-37 1-34 (450)
188 PRK12837 3-ketosteroid-delta-1 99.0 1.8E-09 3.9E-14 90.1 9.5 36 5-41 7-42 (513)
189 PRK09754 phenylpropionate diox 99.0 6.4E-09 1.4E-13 84.2 12.3 109 4-166 2-112 (396)
190 PRK12843 putative FAD-binding 99.0 5.5E-09 1.2E-13 88.3 11.5 36 5-40 16-51 (578)
191 COG0445 GidA Flavin-dependent 99.0 3.2E-10 7E-15 91.4 3.8 147 4-166 3-158 (621)
192 TIGR01350 lipoamide_DH dihydro 99.0 1.9E-09 4E-14 89.1 8.3 35 5-40 1-35 (461)
193 PRK06292 dihydrolipoamide dehy 99.0 9.3E-09 2E-13 84.9 12.4 35 3-37 1-35 (460)
194 PRK13800 putative oxidoreducta 99.0 1.7E-08 3.7E-13 89.4 14.6 36 4-39 12-47 (897)
195 COG1249 Lpd Pyruvate/2-oxoglut 99.0 2.6E-09 5.7E-14 86.7 8.6 38 3-40 2-39 (454)
196 PF00070 Pyr_redox: Pyridine n 99.0 1.6E-08 3.5E-13 62.6 9.6 80 7-150 1-80 (80)
197 TIGR02061 aprA adenosine phosp 98.9 3.4E-08 7.3E-13 83.6 14.4 34 7-40 1-38 (614)
198 COG1233 Phytoene dehydrogenase 98.9 1.4E-09 3E-14 90.1 6.0 54 108-164 224-279 (487)
199 PTZ00058 glutathione reductase 98.9 2.3E-09 4.9E-14 89.8 7.3 34 4-37 47-80 (561)
200 PRK14727 putative mercuric red 98.9 9.8E-09 2.1E-13 85.1 10.6 37 4-40 15-51 (479)
201 TIGR03378 glycerol3P_GlpB glyc 98.9 3.4E-08 7.4E-13 79.1 12.9 61 104-167 259-324 (419)
202 PF13434 K_oxygenase: L-lysine 98.9 1.8E-08 3.8E-13 79.6 11.2 152 5-172 2-165 (341)
203 PLN02676 polyamine oxidase 98.9 1.3E-07 2.7E-12 78.5 16.5 56 107-166 223-286 (487)
204 PRK12779 putative bifunctional 98.9 6.3E-09 1.4E-13 91.9 9.1 36 5-40 306-341 (944)
205 PLN02546 glutathione reductase 98.9 3.7E-09 8.1E-14 88.5 7.3 32 5-36 79-110 (558)
206 PRK13977 myosin-cross-reactive 98.9 6.9E-08 1.5E-12 80.0 13.8 38 5-42 22-63 (576)
207 PRK09564 coenzyme A disulfide 98.9 2.4E-08 5.2E-13 82.1 10.9 110 7-167 2-116 (444)
208 COG4529 Uncharacterized protei 98.9 9.1E-09 2E-13 82.3 8.0 152 6-167 2-165 (474)
209 TIGR01372 soxA sarcosine oxida 98.9 3.9E-08 8.4E-13 87.9 12.6 36 5-40 163-198 (985)
210 COG3634 AhpF Alkyl hydroperoxi 98.9 3.8E-09 8.2E-14 80.8 5.4 111 5-165 211-324 (520)
211 COG0029 NadB Aspartate oxidase 98.9 2.2E-08 4.8E-13 80.2 9.8 149 7-168 9-198 (518)
212 TIGR00137 gid_trmFO tRNA:m(5)U 98.9 5.3E-08 1.1E-12 78.4 11.8 35 6-40 1-35 (433)
213 COG2907 Predicted NAD/FAD-bind 98.8 1.5E-07 3.3E-12 72.2 13.4 58 6-64 9-86 (447)
214 COG1231 Monoamine oxidase [Ami 98.8 1.8E-08 3.9E-13 80.0 8.2 38 4-41 6-43 (450)
215 PRK04965 NADH:flavorubredoxin 98.8 9.9E-08 2.2E-12 76.8 12.5 106 6-174 142-249 (377)
216 KOG2852 Possible oxidoreductas 98.8 4.7E-07 1E-11 67.9 14.3 159 4-167 9-209 (380)
217 PRK14989 nitrite reductase sub 98.8 3.8E-08 8.1E-13 86.3 9.8 109 5-168 3-115 (847)
218 PRK09853 putative selenate red 98.8 3.8E-08 8.3E-13 86.5 9.7 36 5-40 539-574 (1019)
219 TIGR01438 TGR thioredoxin and 98.8 1.7E-08 3.8E-13 83.5 7.2 33 5-37 2-34 (484)
220 TIGR01423 trypano_reduc trypan 98.8 4.1E-08 8.9E-13 81.3 9.4 34 4-37 2-36 (486)
221 COG2509 Uncharacterized FAD-de 98.8 9.4E-08 2E-12 75.8 10.6 56 108-166 173-230 (486)
222 PRK13512 coenzyme A disulfide 98.8 1.3E-07 2.8E-12 77.6 12.0 111 7-167 3-118 (438)
223 PRK06912 acoL dihydrolipoamide 98.8 4.4E-08 9.5E-13 80.8 9.3 32 7-38 2-33 (458)
224 TIGR03197 MnmC_Cterm tRNA U-34 98.8 2.9E-07 6.2E-12 74.3 13.9 64 100-167 127-191 (381)
225 COG3573 Predicted oxidoreducta 98.8 3.2E-08 6.9E-13 75.6 7.6 41 1-41 1-41 (552)
226 PRK07251 pyridine nucleotide-d 98.8 8.9E-09 1.9E-13 84.5 5.1 36 4-39 2-37 (438)
227 KOG0029 Amine oxidase [Seconda 98.8 1.3E-08 2.7E-13 83.9 5.5 39 3-41 13-51 (501)
228 KOG2311 NAD/FAD-utilizing prot 98.8 1.5E-08 3.3E-13 80.5 5.7 151 4-165 27-185 (679)
229 PRK04965 NADH:flavorubredoxin 98.7 7.2E-08 1.6E-12 77.6 9.4 104 6-167 3-112 (377)
230 KOG2404 Fumarate reductase, fl 98.7 1.5E-07 3.2E-12 71.6 10.1 35 7-41 11-45 (477)
231 PRK07208 hypothetical protein; 98.7 1.8E-08 3.9E-13 83.7 5.9 39 3-41 2-40 (479)
232 PTZ00153 lipoamide dehydrogena 98.7 2.7E-07 5.9E-12 78.7 12.9 33 5-37 116-148 (659)
233 PRK05249 soluble pyridine nucl 98.7 2.3E-07 4.9E-12 76.8 12.1 100 6-169 176-275 (461)
234 KOG0404 Thioredoxin reductase 98.7 2.2E-07 4.8E-12 67.1 10.2 115 4-166 7-124 (322)
235 PRK07845 flavoprotein disulfid 98.7 1.6E-07 3.5E-12 77.7 10.9 32 7-38 3-34 (466)
236 PRK09754 phenylpropionate diox 98.7 2.1E-07 4.6E-12 75.4 11.5 98 6-167 145-242 (396)
237 TIGR03169 Nterm_to_SelD pyridi 98.7 5.4E-08 1.2E-12 78.0 7.9 105 7-167 1-108 (364)
238 PTZ00318 NADH dehydrogenase-li 98.7 1.1E-07 2.4E-12 77.7 9.7 36 5-40 10-45 (424)
239 PRK06116 glutathione reductase 98.7 3E-07 6.5E-12 75.8 12.2 100 6-168 168-267 (450)
240 TIGR01350 lipoamide_DH dihydro 98.7 3E-07 6.6E-12 76.0 12.2 100 6-169 171-272 (461)
241 TIGR02374 nitri_red_nirB nitri 98.7 1.4E-07 3.1E-12 82.5 10.1 106 8-167 1-109 (785)
242 KOG1335 Dihydrolipoamide dehyd 98.7 8E-07 1.7E-11 69.2 12.8 38 4-41 38-75 (506)
243 KOG0685 Flavin-containing amin 98.7 2.2E-07 4.7E-12 74.2 9.7 37 5-41 21-58 (498)
244 PRK06416 dihydrolipoamide dehy 98.7 3.7E-07 8E-12 75.6 11.4 99 6-168 173-274 (462)
245 COG3486 IucD Lysine/ornithine 98.7 5E-08 1.1E-12 76.3 5.7 154 1-172 1-163 (436)
246 PRK07846 mycothione reductase; 98.7 1.7E-07 3.7E-12 77.1 9.2 32 5-38 1-32 (451)
247 PRK07846 mycothione reductase; 98.6 6.1E-07 1.3E-11 73.9 12.0 98 6-168 167-264 (451)
248 TIGR02733 desat_CrtD C-3',4' d 98.6 5.1E-08 1.1E-12 81.2 5.8 36 6-41 2-37 (492)
249 PRK07233 hypothetical protein; 98.6 5.8E-08 1.3E-12 79.6 5.7 58 7-64 1-73 (434)
250 TIGR01421 gluta_reduc_1 glutat 98.6 7E-07 1.5E-11 73.6 12.0 100 6-168 167-267 (450)
251 PRK07251 pyridine nucleotide-d 98.6 7.1E-07 1.5E-11 73.4 12.0 98 6-168 158-255 (438)
252 PLN02576 protoporphyrinogen ox 98.6 8.3E-08 1.8E-12 80.1 6.0 38 4-41 11-49 (496)
253 PRK06912 acoL dihydrolipoamide 98.6 1.3E-06 2.8E-11 72.2 12.6 100 6-169 171-271 (458)
254 PRK07818 dihydrolipoamide dehy 98.6 6.9E-08 1.5E-12 79.9 5.1 34 4-37 3-36 (466)
255 TIGR03452 mycothione_red mycot 98.6 1.9E-07 4.1E-12 76.9 7.6 32 5-38 2-33 (452)
256 PLN02507 glutathione reductase 98.6 1.1E-06 2.3E-11 73.4 11.9 99 6-168 204-302 (499)
257 PRK05976 dihydrolipoamide dehy 98.6 1.2E-06 2.5E-11 72.8 12.0 101 6-168 181-283 (472)
258 TIGR01424 gluta_reduc_2 glutat 98.6 1.1E-06 2.4E-11 72.3 11.8 99 6-168 167-265 (446)
259 PRK07845 flavoprotein disulfid 98.6 1.2E-06 2.5E-11 72.6 11.9 99 6-168 178-276 (466)
260 PRK07818 dihydrolipoamide dehy 98.6 1.1E-06 2.4E-11 72.8 11.7 99 6-168 173-275 (466)
261 COG3075 GlpB Anaerobic glycero 98.6 1E-07 2.2E-12 72.6 5.1 36 4-39 1-36 (421)
262 TIGR02732 zeta_caro_desat caro 98.6 1.6E-07 3.4E-12 77.8 6.7 60 7-66 1-76 (474)
263 COG3349 Uncharacterized conser 98.6 1E-07 2.2E-12 77.1 5.3 36 7-42 2-37 (485)
264 TIGR00031 UDP-GALP_mutase UDP- 98.6 1E-07 2.3E-12 75.9 5.3 35 6-40 2-36 (377)
265 COG1249 Lpd Pyruvate/2-oxoglut 98.6 1.5E-06 3.3E-11 70.8 12.1 100 6-169 174-275 (454)
266 PLN02268 probable polyamine ox 98.6 1.1E-07 2.3E-12 78.2 5.4 36 6-41 1-36 (435)
267 TIGR02053 MerA mercuric reduct 98.5 1.2E-07 2.6E-12 78.4 5.0 33 6-38 1-33 (463)
268 TIGR03315 Se_ygfK putative sel 98.5 1.3E-07 2.8E-12 83.5 5.4 36 5-40 537-572 (1012)
269 PRK02106 choline dehydrogenase 98.5 1.2E-07 2.7E-12 80.1 5.2 38 1-38 1-39 (560)
270 TIGR02053 MerA mercuric reduct 98.5 1.5E-06 3.2E-11 72.0 11.4 99 6-168 167-268 (463)
271 PF00732 GMC_oxred_N: GMC oxid 98.5 9.7E-08 2.1E-12 74.3 4.1 34 6-39 1-35 (296)
272 PLN02487 zeta-carotene desatur 98.5 2.8E-07 6E-12 77.4 6.9 62 6-67 76-153 (569)
273 TIGR03452 mycothione_red mycot 98.5 2.2E-06 4.8E-11 70.6 12.0 98 6-168 170-267 (452)
274 COG1252 Ndh NADH dehydrogenase 98.5 1.9E-06 4.2E-11 68.8 10.9 109 4-167 2-112 (405)
275 PRK06370 mercuric reductase; V 98.5 2.7E-06 5.9E-11 70.4 12.0 101 6-168 172-273 (463)
276 PRK06327 dihydrolipoamide dehy 98.5 2.6E-06 5.5E-11 70.8 11.8 99 6-168 184-286 (475)
277 TIGR01423 trypano_reduc trypan 98.5 2.9E-06 6.3E-11 70.4 12.0 100 6-168 188-290 (486)
278 TIGR03385 CoA_CoA_reduc CoA-di 98.5 2.2E-06 4.8E-11 70.2 11.3 97 6-167 138-234 (427)
279 PRK06115 dihydrolipoamide dehy 98.5 2.6E-06 5.5E-11 70.6 11.6 100 5-168 174-278 (466)
280 PTZ00052 thioredoxin reductase 98.5 2E-07 4.3E-12 77.6 5.0 46 120-169 236-281 (499)
281 PRK14989 nitrite reductase sub 98.5 2.9E-06 6.3E-11 74.7 12.0 101 6-167 146-246 (847)
282 PRK08010 pyridine nucleotide-d 98.5 3.9E-06 8.5E-11 69.1 12.2 98 6-168 159-256 (441)
283 PRK12831 putative oxidoreducta 98.4 2.9E-07 6.3E-12 76.0 5.4 36 5-40 140-175 (464)
284 PRK05329 anaerobic glycerol-3- 98.4 2.9E-07 6.3E-12 74.6 5.1 35 4-38 1-35 (422)
285 COG1148 HdrA Heterodisulfide r 98.4 3E-07 6.5E-12 73.5 5.0 37 5-41 124-160 (622)
286 TIGR02374 nitri_red_nirB nitri 98.4 3E-06 6.4E-11 74.4 11.6 99 6-167 141-239 (785)
287 PTZ00058 glutathione reductase 98.4 5.3E-06 1.1E-10 69.9 12.1 101 5-168 237-338 (561)
288 PRK13512 coenzyme A disulfide 98.4 3.4E-06 7.4E-11 69.3 10.8 94 6-167 149-242 (438)
289 COG0562 Glf UDP-galactopyranos 98.4 4.5E-07 9.7E-12 69.0 5.1 36 6-41 2-37 (374)
290 TIGR01316 gltA glutamate synth 98.4 4.8E-07 1E-11 74.5 5.7 37 4-40 132-168 (449)
291 PLN02852 ferredoxin-NADP+ redu 98.4 4.9E-07 1.1E-11 74.5 5.6 37 5-41 26-64 (491)
292 PTZ00052 thioredoxin reductase 98.4 6.7E-06 1.5E-10 68.6 11.9 32 6-37 183-214 (499)
293 TIGR02462 pyranose_ox pyranose 98.4 5E-07 1.1E-11 75.2 5.1 36 6-41 1-36 (544)
294 PRK14694 putative mercuric red 98.4 6.4E-06 1.4E-10 68.3 11.6 97 6-168 179-275 (468)
295 PRK12769 putative oxidoreducta 98.4 5.8E-07 1.3E-11 77.4 5.5 36 5-40 327-362 (654)
296 PRK09564 coenzyme A disulfide 98.4 6.5E-06 1.4E-10 67.8 11.4 98 6-167 150-247 (444)
297 PRK12775 putative trifunctiona 98.4 5.9E-07 1.3E-11 80.4 5.3 37 5-41 430-466 (1006)
298 TIGR03377 glycerol3P_GlpA glyc 98.3 3.9E-06 8.4E-11 70.4 9.8 74 103-179 123-204 (516)
299 PRK06467 dihydrolipoamide dehy 98.3 7.4E-06 1.6E-10 68.0 11.3 98 6-168 175-276 (471)
300 PRK14727 putative mercuric red 98.3 8.7E-06 1.9E-10 67.7 11.6 97 6-168 189-285 (479)
301 PRK12810 gltD glutamate syntha 98.3 9.6E-07 2.1E-11 73.2 5.7 37 5-41 143-179 (471)
302 COG0446 HcaD Uncharacterized N 98.3 8.1E-06 1.8E-10 66.4 10.9 99 6-166 137-237 (415)
303 PRK12778 putative bifunctional 98.3 9.7E-07 2.1E-11 77.2 5.4 36 5-40 431-466 (752)
304 PRK06567 putative bifunctional 98.3 7.8E-07 1.7E-11 77.8 4.6 33 5-37 383-415 (1028)
305 PRK06292 dihydrolipoamide dehy 98.3 1.7E-05 3.6E-10 65.8 12.1 100 6-169 170-271 (460)
306 PLN02529 lysine-specific histo 98.3 1.3E-06 2.8E-11 75.2 5.6 37 4-40 159-195 (738)
307 PLN02546 glutathione reductase 98.3 1.6E-05 3.4E-10 67.1 11.8 100 6-168 253-352 (558)
308 PTZ00318 NADH dehydrogenase-li 98.3 1.2E-05 2.7E-10 65.7 10.9 92 7-166 175-280 (424)
309 KOG2960 Protein involved in th 98.3 3E-06 6.5E-11 60.9 6.2 37 6-42 77-115 (328)
310 PRK11749 dihydropyrimidine deh 98.3 1.4E-06 3.1E-11 71.9 5.3 36 5-40 140-175 (457)
311 PLN02328 lysine-specific histo 98.3 1.5E-06 3.2E-11 75.3 5.5 37 5-41 238-274 (808)
312 PRK13748 putative mercuric red 98.3 1.7E-05 3.6E-10 67.4 11.8 97 6-168 271-367 (561)
313 PTZ00188 adrenodoxin reductase 98.2 1.8E-06 3.9E-11 70.5 5.5 37 5-41 39-76 (506)
314 KOG3923 D-aspartate oxidase [A 98.2 1.1E-05 2.4E-10 60.8 9.0 38 5-42 3-47 (342)
315 TIGR01438 TGR thioredoxin and 98.2 1.9E-05 4E-10 65.7 11.3 98 6-168 181-281 (484)
316 PRK12814 putative NADPH-depend 98.2 2E-06 4.4E-11 73.9 5.5 36 5-40 193-228 (652)
317 TIGR01318 gltD_gamma_fam gluta 98.2 2.5E-06 5.4E-11 70.6 5.7 36 5-40 141-176 (467)
318 PTZ00153 lipoamide dehydrogena 98.2 2.3E-05 4.9E-10 67.2 11.4 102 6-168 313-429 (659)
319 COG2303 BetA Choline dehydroge 98.2 1.8E-06 3.9E-11 72.5 4.5 35 4-38 6-40 (542)
320 KOG1336 Monodehydroascorbate/f 98.2 2E-05 4.3E-10 63.3 9.8 101 6-167 214-314 (478)
321 PRK12809 putative oxidoreducta 98.2 3.1E-06 6.7E-11 72.7 5.7 36 5-40 310-345 (639)
322 TIGR02352 thiamin_ThiO glycine 98.2 8E-05 1.7E-09 59.0 13.2 64 100-167 129-194 (337)
323 KOG4254 Phytoene desaturase [C 98.2 5.8E-06 1.3E-10 65.8 6.3 62 108-172 264-327 (561)
324 PRK12770 putative glutamate sy 98.1 4.9E-06 1.1E-10 66.4 5.8 36 6-41 19-54 (352)
325 TIGR03140 AhpF alkyl hydropero 98.1 4.2E-05 9.1E-10 64.2 11.0 94 6-167 353-451 (515)
326 PRK10262 thioredoxin reductase 98.1 3.8E-05 8.2E-10 60.6 10.1 98 6-168 147-250 (321)
327 KOG3851 Sulfide:quinone oxidor 98.1 3E-06 6.6E-11 64.5 3.5 35 4-38 38-74 (446)
328 PF01593 Amino_oxidase: Flavin 98.1 1.8E-05 3.9E-10 64.6 8.4 46 120-169 223-268 (450)
329 PF13434 K_oxygenase: L-lysine 98.1 2.7E-05 5.8E-10 61.7 8.8 132 5-164 190-339 (341)
330 PLN02785 Protein HOTHEAD 98.1 5.2E-06 1.1E-10 70.4 5.0 35 4-39 54-88 (587)
331 PF08491 SE: Squalene epoxidas 98.1 4.3E-05 9.2E-10 57.8 9.2 74 155-230 2-75 (276)
332 PRK12771 putative glutamate sy 98.1 6.3E-06 1.4E-10 69.9 5.3 35 6-40 138-172 (564)
333 TIGR01317 GOGAT_sm_gam glutama 98.1 6.6E-06 1.4E-10 68.4 5.2 35 6-40 144-178 (485)
334 COG1252 Ndh NADH dehydrogenase 98.0 2.9E-05 6.2E-10 62.3 8.5 53 109-171 214-268 (405)
335 TIGR01810 betA choline dehydro 98.0 4.7E-06 1E-10 70.2 4.1 33 7-39 1-34 (532)
336 COG0493 GltD NADPH-dependent g 98.0 6E-06 1.3E-10 67.5 4.4 36 6-41 124-159 (457)
337 KOG1276 Protoporphyrinogen oxi 98.0 8.8E-06 1.9E-10 64.4 4.7 37 5-41 11-49 (491)
338 PLN03000 amine oxidase 98.0 1.1E-05 2.4E-10 70.3 5.5 37 5-41 184-220 (881)
339 TIGR01316 gltA glutamate synth 98.0 0.00018 4E-09 59.4 11.8 33 6-38 273-305 (449)
340 PRK13984 putative oxidoreducta 97.9 1.5E-05 3.3E-10 68.2 5.5 36 5-40 283-318 (604)
341 PRK15317 alkyl hydroperoxide r 97.9 0.00012 2.7E-09 61.5 10.7 94 6-167 352-450 (517)
342 PLN02976 amine oxidase 97.9 1.7E-05 3.7E-10 72.1 5.4 36 5-40 693-728 (1713)
343 TIGR01292 TRX_reduct thioredox 97.9 0.0004 8.7E-09 54.0 11.9 93 6-167 142-239 (300)
344 TIGR03169 Nterm_to_SelD pyridi 97.8 0.00038 8.2E-09 55.9 10.8 48 109-166 196-243 (364)
345 TIGR03862 flavo_PP4765 unchara 97.7 0.00036 7.8E-09 55.9 9.9 64 106-175 84-161 (376)
346 PRK12770 putative glutamate sy 97.7 0.00049 1.1E-08 55.0 10.8 33 6-38 173-206 (352)
347 PRK12831 putative oxidoreducta 97.7 0.00059 1.3E-08 56.6 11.5 33 6-38 282-314 (464)
348 KOG1238 Glucose dehydrogenase/ 97.7 3.7E-05 8.1E-10 64.1 4.2 37 4-40 56-93 (623)
349 KOG1800 Ferredoxin/adrenodoxin 97.7 5.5E-05 1.2E-09 59.2 4.8 36 5-40 20-57 (468)
350 PF00996 GDI: GDP dissociation 97.7 6.6E-05 1.4E-09 61.0 5.2 45 4-48 3-47 (438)
351 COG1206 Gid NAD(FAD)-utilizing 97.7 4.2E-05 9.2E-10 58.7 3.8 37 4-40 2-38 (439)
352 PRK11749 dihydropyrimidine deh 97.7 0.00082 1.8E-08 55.7 11.4 33 6-38 274-307 (457)
353 PF06100 Strep_67kDa_ant: Stre 97.7 0.002 4.2E-08 52.8 12.8 35 6-40 3-41 (500)
354 KOG1336 Monodehydroascorbate/f 97.6 0.0006 1.3E-08 55.1 9.6 40 120-165 141-180 (478)
355 KOG0399 Glutamate synthase [Am 97.6 6.5E-05 1.4E-09 66.3 4.4 36 6-41 1786-1821(2142)
356 KOG4716 Thioredoxin reductase 97.6 7.4E-05 1.6E-09 57.7 3.9 34 4-37 18-51 (503)
357 KOG0405 Pyridine nucleotide-di 97.6 9.6E-05 2.1E-09 57.3 4.4 37 4-40 19-55 (478)
358 COG0569 TrkA K+ transport syst 97.5 0.00023 5.1E-09 53.0 5.6 57 7-63 2-65 (225)
359 PF01210 NAD_Gly3P_dh_N: NAD-d 97.5 0.00015 3.3E-09 50.9 4.2 32 7-38 1-32 (157)
360 PF02737 3HCDH_N: 3-hydroxyacy 97.5 0.00021 4.5E-09 51.4 4.7 33 7-39 1-33 (180)
361 PRK05675 sdhA succinate dehydr 97.5 0.0022 4.9E-08 54.6 11.6 59 108-168 126-191 (570)
362 PRK12778 putative bifunctional 97.4 0.0025 5.4E-08 56.3 11.4 33 6-38 571-604 (752)
363 PRK06249 2-dehydropantoate 2-r 97.4 0.00033 7.2E-09 55.0 5.4 38 1-38 1-38 (313)
364 PRK07819 3-hydroxybutyryl-CoA 97.4 0.0003 6.4E-09 54.5 4.8 40 1-40 1-40 (286)
365 TIGR03143 AhpF_homolog putativ 97.4 0.0035 7.5E-08 53.4 11.6 33 6-38 144-176 (555)
366 TIGR01372 soxA sarcosine oxida 97.4 0.0021 4.6E-08 58.3 10.5 91 6-167 318-412 (985)
367 KOG1346 Programmed cell death 97.3 0.00071 1.5E-08 53.9 6.4 52 120-175 407-460 (659)
368 PRK14106 murD UDP-N-acetylmura 97.3 0.00052 1.1E-08 56.8 5.4 38 1-38 1-38 (450)
369 PRK12810 gltD glutamate syntha 97.3 0.0053 1.2E-07 51.2 11.2 33 6-38 282-315 (471)
370 PF00743 FMO-like: Flavin-bind 97.2 0.0014 3E-08 55.2 7.3 34 6-39 184-217 (531)
371 PRK12779 putative bifunctional 97.2 0.0082 1.8E-07 54.1 12.2 33 6-38 448-480 (944)
372 PF03721 UDPG_MGDP_dh_N: UDP-g 97.2 0.0004 8.7E-09 50.1 3.3 33 7-39 2-34 (185)
373 PRK12769 putative oxidoreducta 97.2 0.01 2.3E-07 51.5 12.4 33 6-38 469-502 (654)
374 PRK02705 murD UDP-N-acetylmura 97.2 0.0006 1.3E-08 56.6 4.7 34 7-40 2-35 (459)
375 COG1251 NirB NAD(P)H-nitrite r 97.2 0.0043 9.2E-08 53.1 9.4 116 4-173 2-120 (793)
376 PLN02172 flavin-containing mon 97.1 0.0012 2.7E-08 54.6 6.3 33 6-38 205-237 (461)
377 PRK07066 3-hydroxybutyryl-CoA 97.1 0.00085 1.8E-08 52.6 5.0 34 6-39 8-41 (321)
378 PF02558 ApbA: Ketopantoate re 97.1 0.0011 2.3E-08 46.2 4.9 31 8-38 1-31 (151)
379 PRK06129 3-hydroxyacyl-CoA deh 97.1 0.00075 1.6E-08 52.9 4.4 33 7-39 4-36 (308)
380 TIGR01318 gltD_gamma_fam gluta 97.1 0.012 2.6E-07 49.1 11.5 34 6-39 283-317 (467)
381 PRK05808 3-hydroxybutyryl-CoA 97.1 0.00095 2.1E-08 51.7 4.7 34 7-40 5-38 (282)
382 PRK07530 3-hydroxybutyryl-CoA 97.1 0.00093 2E-08 52.0 4.7 34 6-39 5-38 (292)
383 PRK01438 murD UDP-N-acetylmura 97.1 0.00094 2E-08 55.7 4.9 33 6-38 17-49 (480)
384 PRK08293 3-hydroxybutyryl-CoA 97.0 0.0011 2.4E-08 51.5 4.8 34 6-39 4-37 (287)
385 PRK12814 putative NADPH-depend 97.0 0.012 2.6E-07 51.1 11.3 33 6-38 324-357 (652)
386 PRK09853 putative selenate red 97.0 0.013 2.8E-07 52.7 11.6 33 6-38 669-703 (1019)
387 PRK11064 wecC UDP-N-acetyl-D-m 97.0 0.0011 2.4E-08 54.2 4.7 37 1-39 1-37 (415)
388 PRK05708 2-dehydropantoate 2-r 96.9 0.0015 3.3E-08 51.1 4.9 33 6-38 3-35 (305)
389 PTZ00082 L-lactate dehydrogena 96.9 0.0022 4.7E-08 50.5 5.5 40 1-40 1-42 (321)
390 PRK09260 3-hydroxybutyryl-CoA 96.9 0.0014 2.9E-08 51.0 4.4 33 7-39 3-35 (288)
391 COG1251 NirB NAD(P)H-nitrite r 96.9 0.0021 4.5E-08 54.8 5.5 105 7-174 147-253 (793)
392 PRK06035 3-hydroxyacyl-CoA deh 96.9 0.0017 3.7E-08 50.5 4.6 34 6-39 4-37 (291)
393 COG5044 MRS6 RAB proteins gera 96.9 0.0025 5.5E-08 50.0 5.3 40 5-44 6-45 (434)
394 PRK06719 precorrin-2 dehydroge 96.8 0.0022 4.8E-08 45.0 4.5 31 5-35 13-43 (157)
395 PRK00066 ldh L-lactate dehydro 96.8 0.0031 6.7E-08 49.5 5.5 39 1-39 2-42 (315)
396 PRK06130 3-hydroxybutyryl-CoA 96.8 0.0025 5.4E-08 50.1 5.0 38 1-39 1-38 (311)
397 TIGR02354 thiF_fam2 thiamine b 96.8 0.0027 5.9E-08 46.4 4.7 34 5-38 21-55 (200)
398 PF00899 ThiF: ThiF family; I 96.8 0.0024 5.1E-08 43.6 4.2 34 5-38 2-36 (135)
399 PF13241 NAD_binding_7: Putati 96.7 0.0014 3E-08 42.5 2.6 35 4-38 6-40 (103)
400 PRK06522 2-dehydropantoate 2-r 96.7 0.0027 5.9E-08 49.6 4.7 32 7-38 2-33 (304)
401 PRK12921 2-dehydropantoate 2-r 96.7 0.0029 6.3E-08 49.5 4.7 30 7-36 2-31 (305)
402 TIGR01470 cysG_Nterm siroheme 96.7 0.0035 7.6E-08 46.0 4.8 34 5-38 9-42 (205)
403 PRK06718 precorrin-2 dehydroge 96.7 0.0032 7E-08 46.1 4.6 34 4-37 9-42 (202)
404 PRK04308 murD UDP-N-acetylmura 96.7 0.0041 8.8E-08 51.5 5.6 40 1-40 1-40 (445)
405 PRK07531 bifunctional 3-hydrox 96.6 0.0032 7E-08 52.7 4.9 38 1-39 1-38 (495)
406 PLN02545 3-hydroxybutyryl-CoA 96.6 0.0034 7.4E-08 48.9 4.8 34 6-39 5-38 (295)
407 PRK08229 2-dehydropantoate 2-r 96.6 0.0034 7.3E-08 50.0 4.8 31 7-37 4-34 (341)
408 TIGR03315 Se_ygfK putative sel 96.6 0.032 6.8E-07 50.5 11.1 33 6-38 667-701 (1012)
409 COG0446 HcaD Uncharacterized N 96.6 0.011 2.3E-07 48.2 7.9 41 120-167 67-107 (415)
410 PF02254 TrkA_N: TrkA-N domain 96.6 0.004 8.8E-08 41.1 4.3 32 8-39 1-32 (116)
411 PRK08268 3-hydroxy-acyl-CoA de 96.6 0.0036 7.7E-08 52.5 4.8 34 6-39 8-41 (507)
412 COG1004 Ugd Predicted UDP-gluc 96.6 0.0032 7E-08 50.0 4.3 33 7-39 2-34 (414)
413 PRK14618 NAD(P)H-dependent gly 96.6 0.0047 1E-07 49.0 5.2 33 6-38 5-37 (328)
414 PRK15116 sulfur acceptor prote 96.6 0.0048 1E-07 47.1 4.9 35 5-39 30-65 (268)
415 cd05292 LDH_2 A subgroup of L- 96.5 0.0046 1E-07 48.5 4.9 33 7-39 2-36 (308)
416 PRK14619 NAD(P)H-dependent gly 96.5 0.0052 1.1E-07 48.2 5.2 36 4-39 3-38 (308)
417 TIGR01763 MalateDH_bact malate 96.5 0.0054 1.2E-07 48.0 5.2 33 7-39 3-36 (305)
418 KOG2495 NADH-dehydrogenase (ub 96.5 0.028 6.1E-07 45.3 8.9 36 4-39 54-89 (491)
419 PF01488 Shikimate_DH: Shikima 96.5 0.0078 1.7E-07 41.1 5.2 34 5-38 12-46 (135)
420 KOG1346 Programmed cell death 96.5 0.016 3.5E-07 46.5 7.3 131 5-167 178-312 (659)
421 PRK02472 murD UDP-N-acetylmura 96.4 0.0058 1.3E-07 50.6 5.2 38 1-38 1-38 (447)
422 PRK14620 NAD(P)H-dependent gly 96.4 0.0054 1.2E-07 48.5 4.8 32 7-38 2-33 (326)
423 PRK12775 putative trifunctiona 96.4 0.053 1.2E-06 49.5 11.4 33 6-38 572-605 (1006)
424 PRK13984 putative oxidoreducta 96.4 0.038 8.3E-07 47.7 10.2 30 6-35 419-454 (604)
425 PRK12475 thiamine/molybdopteri 96.4 0.0061 1.3E-07 48.4 4.8 34 5-38 24-58 (338)
426 TIGR02279 PaaC-3OHAcCoADH 3-hy 96.4 0.0054 1.2E-07 51.4 4.6 35 6-40 6-40 (503)
427 PF03446 NAD_binding_2: NAD bi 96.4 0.0077 1.7E-07 42.5 4.8 33 7-39 3-35 (163)
428 PF00056 Ldh_1_N: lactate/mala 96.4 0.0095 2.1E-07 41.0 5.1 33 7-39 2-37 (141)
429 PF13478 XdhC_C: XdhC Rossmann 96.4 0.0055 1.2E-07 41.8 3.8 32 8-39 1-32 (136)
430 cd01080 NAD_bind_m-THF_DH_Cycl 96.3 0.0095 2.1E-07 42.2 5.1 34 5-38 44-78 (168)
431 PRK04148 hypothetical protein; 96.3 0.0044 9.5E-08 41.9 3.1 33 6-39 18-50 (134)
432 PF01262 AlaDh_PNT_C: Alanine 96.3 0.009 1.9E-07 42.4 4.9 33 6-38 21-53 (168)
433 TIGR03026 NDP-sugDHase nucleot 96.3 0.0055 1.2E-07 50.1 4.2 33 7-39 2-34 (411)
434 TIGR00518 alaDH alanine dehydr 96.3 0.0069 1.5E-07 48.8 4.6 33 6-38 168-200 (370)
435 TIGR02356 adenyl_thiF thiazole 96.3 0.0093 2E-07 43.7 4.8 34 5-38 21-55 (202)
436 cd01487 E1_ThiF_like E1_ThiF_l 96.2 0.0099 2.1E-07 42.5 4.8 32 7-38 1-33 (174)
437 PRK07688 thiamine/molybdopteri 96.2 0.009 1.9E-07 47.4 5.0 34 5-38 24-58 (339)
438 PRK00094 gpsA NAD(P)H-dependen 96.2 0.0078 1.7E-07 47.5 4.6 32 7-38 3-34 (325)
439 KOG1439 RAB proteins geranylge 96.2 0.0028 6.1E-08 50.2 1.9 42 4-45 3-44 (440)
440 KOG4405 GDP dissociation inhib 96.2 0.0078 1.7E-07 48.0 4.3 46 5-50 8-53 (547)
441 PRK07417 arogenate dehydrogena 96.2 0.0069 1.5E-07 46.8 4.0 32 7-38 2-33 (279)
442 TIGR02355 moeB molybdopterin s 96.2 0.011 2.3E-07 44.6 4.9 35 5-39 24-59 (240)
443 cd01483 E1_enzyme_family Super 96.1 0.012 2.6E-07 40.5 4.7 33 7-39 1-34 (143)
444 PRK12809 putative oxidoreducta 96.1 0.11 2.3E-06 45.3 11.3 34 6-39 452-486 (639)
445 cd00401 AdoHcyase S-adenosyl-L 96.1 0.01 2.2E-07 48.3 4.7 34 6-39 203-236 (413)
446 PRK06223 malate dehydrogenase; 96.1 0.012 2.5E-07 46.3 5.1 33 7-39 4-37 (307)
447 PLN02602 lactate dehydrogenase 96.1 0.013 2.9E-07 46.6 5.3 34 6-39 38-73 (350)
448 PRK08644 thiamine biosynthesis 96.1 0.013 2.9E-07 43.2 5.0 34 5-38 28-62 (212)
449 PRK05690 molybdopterin biosynt 96.1 0.013 2.7E-07 44.4 4.8 34 5-38 32-66 (245)
450 PRK09424 pntA NAD(P) transhydr 96.1 0.0091 2E-07 49.8 4.4 35 5-39 165-199 (509)
451 cd05291 HicDH_like L-2-hydroxy 96.0 0.013 2.7E-07 46.0 4.9 33 7-39 2-36 (306)
452 PRK11730 fadB multifunctional 96.0 0.01 2.3E-07 52.0 4.6 34 6-39 314-347 (715)
453 PRK08328 hypothetical protein; 96.0 0.014 3.1E-07 43.7 4.8 35 5-39 27-62 (231)
454 cd01339 LDH-like_MDH L-lactate 96.0 0.012 2.6E-07 46.1 4.4 32 8-39 1-33 (300)
455 COG1250 FadB 3-hydroxyacyl-CoA 96.0 0.012 2.7E-07 45.7 4.4 34 6-39 4-37 (307)
456 cd00757 ThiF_MoeB_HesA_family 96.0 0.015 3.2E-07 43.5 4.8 34 5-38 21-55 (228)
457 PRK07502 cyclohexadienyl dehyd 96.0 0.012 2.6E-07 46.2 4.5 38 1-38 1-41 (307)
458 PRK10669 putative cation:proto 95.9 0.015 3.3E-07 49.6 5.4 34 6-39 418-451 (558)
459 TIGR02437 FadB fatty oxidation 95.9 0.011 2.5E-07 51.7 4.6 35 6-40 314-348 (714)
460 cd05293 LDH_1 A subgroup of L- 95.9 0.018 3.9E-07 45.2 5.2 35 5-39 3-39 (312)
461 KOG2304 3-hydroxyacyl-CoA dehy 95.9 0.0098 2.1E-07 43.6 3.4 34 6-39 12-45 (298)
462 TIGR01915 npdG NADPH-dependent 95.9 0.016 3.4E-07 43.1 4.7 32 7-38 2-34 (219)
463 cd01075 NAD_bind_Leu_Phe_Val_D 95.8 0.021 4.6E-07 41.8 5.1 33 6-38 29-61 (200)
464 KOG2755 Oxidoreductase [Genera 95.8 0.0079 1.7E-07 45.2 2.8 32 8-39 2-35 (334)
465 cd01492 Aos1_SUMO Ubiquitin ac 95.8 0.019 4.2E-07 41.9 4.7 34 5-38 21-55 (197)
466 cd00755 YgdL_like Family of ac 95.8 0.019 4.2E-07 42.9 4.7 34 5-38 11-45 (231)
467 cd01485 E1-1_like Ubiquitin ac 95.8 0.02 4.4E-07 41.8 4.8 34 5-38 19-53 (198)
468 PTZ00117 malate dehydrogenase; 95.8 0.022 4.7E-07 45.0 5.2 35 5-39 5-40 (319)
469 PRK15057 UDP-glucose 6-dehydro 95.8 0.014 3E-07 47.4 4.2 33 7-40 2-34 (388)
470 COG1893 ApbA Ketopantoate redu 95.8 0.015 3.2E-07 45.6 4.2 33 7-39 2-34 (307)
471 TIGR02441 fa_ox_alpha_mit fatt 95.8 0.012 2.7E-07 51.6 4.1 34 6-39 336-369 (737)
472 PLN02852 ferredoxin-NADP+ redu 95.7 0.23 4.9E-06 41.7 11.2 22 6-27 167-188 (491)
473 TIGR03736 PRTRC_ThiF PRTRC sys 95.7 0.015 3.2E-07 43.8 4.0 36 4-39 10-56 (244)
474 PRK12549 shikimate 5-dehydroge 95.7 0.019 4.1E-07 44.5 4.7 33 6-38 128-161 (284)
475 cd05290 LDH_3 A subgroup of L- 95.7 0.021 4.5E-07 44.8 4.9 33 7-39 1-35 (307)
476 TIGR01505 tartro_sem_red 2-hyd 95.7 0.014 3E-07 45.4 4.0 33 7-39 1-33 (291)
477 PRK01368 murD UDP-N-acetylmura 95.7 0.017 3.8E-07 47.8 4.7 37 1-38 1-38 (454)
478 cd05311 NAD_bind_2_malic_enz N 95.7 0.022 4.9E-07 42.5 4.8 34 5-38 25-61 (226)
479 COG3486 IucD Lysine/ornithine 95.7 0.096 2.1E-06 42.1 8.3 44 120-166 292-340 (436)
480 PRK05653 fabG 3-ketoacyl-(acyl 95.6 0.026 5.6E-07 42.3 5.1 39 1-39 1-40 (246)
481 PLN02353 probable UDP-glucose 95.6 0.019 4.1E-07 47.7 4.5 33 7-39 3-37 (473)
482 PRK08223 hypothetical protein; 95.6 0.024 5.2E-07 43.7 4.7 35 5-39 27-62 (287)
483 TIGR02964 xanthine_xdhC xanthi 95.6 0.026 5.7E-07 42.7 4.9 35 5-39 100-134 (246)
484 COG1748 LYS9 Saccharopine dehy 95.6 0.024 5.2E-07 45.6 4.8 33 7-39 3-36 (389)
485 PRK11559 garR tartronate semia 95.6 0.02 4.4E-07 44.6 4.5 33 7-39 4-36 (296)
486 PRK02006 murD UDP-N-acetylmura 95.6 0.022 4.7E-07 47.9 4.8 34 5-38 7-40 (498)
487 PRK08306 dipicolinate synthase 95.6 0.025 5.4E-07 44.1 4.8 34 5-38 152-185 (296)
488 PRK01710 murD UDP-N-acetylmura 95.5 0.022 4.7E-07 47.4 4.7 34 6-39 15-48 (458)
489 PRK15461 NADH-dependent gamma- 95.5 0.023 4.9E-07 44.4 4.5 33 7-39 3-35 (296)
490 PF00670 AdoHcyase_NAD: S-aden 95.5 0.023 4.9E-07 39.8 4.0 33 6-38 24-56 (162)
491 PF03807 F420_oxidored: NADP o 95.5 0.027 5.8E-07 35.7 4.1 33 7-39 1-37 (96)
492 TIGR00936 ahcY adenosylhomocys 95.5 0.024 5.3E-07 46.0 4.7 35 5-39 195-229 (406)
493 PRK00683 murD UDP-N-acetylmura 95.5 0.023 4.9E-07 46.7 4.6 34 6-39 4-37 (418)
494 PRK03659 glutathione-regulated 95.5 0.032 6.9E-07 48.1 5.6 34 6-39 401-434 (601)
495 PRK09496 trkA potassium transp 95.5 0.021 4.6E-07 47.3 4.5 33 7-39 2-34 (453)
496 PRK11154 fadJ multifunctional 95.5 0.018 3.8E-07 50.5 4.1 34 6-39 310-344 (708)
497 PLN02240 UDP-glucose 4-epimera 95.5 0.033 7.2E-07 44.4 5.5 37 1-37 1-38 (352)
498 PRK03369 murD UDP-N-acetylmura 95.5 0.021 4.6E-07 47.8 4.4 33 6-38 13-45 (488)
499 cd01078 NAD_bind_H4MPT_DH NADP 95.4 0.038 8.2E-07 40.2 5.2 33 5-37 28-61 (194)
500 TIGR02440 FadJ fatty oxidation 95.4 0.021 4.5E-07 50.0 4.3 34 6-39 305-339 (699)
No 1
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=2.9e-30 Score=206.96 Aligned_cols=209 Identities=29% Similarity=0.411 Sum_probs=158.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKS-DGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT 83 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (232)
.+||+||||||+|+++|..|+++|++|+||||. ......++++.+.++++++|+++|+.+.+.....+.......+...
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 479999999999999999999999999999998 4555667999999999999999999888887776555554444333
Q ss_pred CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeC-CCcEEEccEEE
Q 044609 84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLG-DSTIIKAKVLI 159 (232)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~-~g~~~~a~~vV 159 (232)
.....++...... ....+.+.+..+.+.|.+.+. +++++++++|+.++.++ +. +.+++. +|++++||+||
T Consensus 82 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~---~~-v~v~l~~dG~~~~a~llV 155 (387)
T COG0654 82 RRLLIFDAAELGR--GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG---DG-VTVTLSFDGETLDADLLV 155 (387)
T ss_pred ceeEEecccccCC--CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC---Cc-eEEEEcCCCcEEecCEEE
Confidence 2234444444443 455678999999999999874 48999999999999885 33 557777 99999999999
Q ss_pred ecCCCchhhhhhhcC-CCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeE
Q 044609 160 GCDGVHSMVAQWLGL-SESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDV 221 (232)
Q Consensus 160 ~A~G~~S~~r~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 221 (232)
+|||.+|.+|+.++. .... .+.+..+.+.+....+ .....+.+|.+.+ .+.++|++++..
T Consensus 156 gADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~p~~~~~~ 217 (387)
T COG0654 156 GADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEP-HEGRAGERFTHAG-PFALLPLPDNRS 217 (387)
T ss_pred ECCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCC-CCCeEEEEecCCC-ceEEEecCCCce
Confidence 999999999999993 3333 4555555555555422 2233444555555 488999996553
No 2
>PRK06753 hypothetical protein; Provisional
Probab=99.98 E-value=4.6e-30 Score=205.43 Aligned_cols=211 Identities=24% Similarity=0.391 Sum_probs=164.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCce
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGAT 86 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (232)
||+||||||+|+++|+.|+++|++|+|+||.+.+...++++.+++++++.|+++|+.+.+.....+.....+++.. +..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~-g~~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDK-GTL 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCC-CCE
Confidence 7999999999999999999999999999999988878899999999999999999999888777777777766543 333
Q ss_pred -eEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 87 -QELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
...++. . ....+.++|..|.+.|.+.+++.+++++++|++++.++ .. +.|++.+|+++.+|+||+|||.+
T Consensus 81 ~~~~~~~--~---~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~~~~vigadG~~ 151 (373)
T PRK06753 81 LNKVKLK--S---NTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENET---DK-VTIHFADGESEAFDLCIGADGIH 151 (373)
T ss_pred Eeecccc--c---CCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecC---Cc-EEEEECCCCEEecCEEEECCCcc
Confidence 322221 1 22345789999999999998878899999999998653 44 77888999999999999999999
Q ss_pred hhhhhhhcCC-CCcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEec
Q 044609 166 SMVAQWLGLS-ESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRY 228 (232)
Q Consensus 166 S~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 228 (232)
|.+|+.++.. .+.+.+..++++.+...... .......++..+.+++++|++++..+|++.+.
T Consensus 152 S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~ 214 (373)
T PRK06753 152 SKVRQSVNADSKVRYQGYTCFRGLIDDIDLK-LPDCAKEYWGTKGRFGIVPLLNNQAYWFITIN 214 (373)
T ss_pred hHHHHHhCCCCCceEcceEEEEEEecccccc-CccceEEEEcCCCEEEEEEcCCCeEEEEEEec
Confidence 9999998644 34456677777665433211 12233445555556889999999888877654
No 3
>PRK08013 oxidoreductase; Provisional
Probab=99.98 E-value=9.1e-30 Score=205.13 Aligned_cols=208 Identities=20% Similarity=0.244 Sum_probs=152.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC------cceeeeecccHHHHHHHcCChHHHHhh-ccCceee
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA------TGAALTLSPNAWLALDALGVSHKLTSV-YAPAKRV 76 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~------~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~ 76 (232)
+++||+||||||+|+++|+.|+++|++|+|+||.+.+.. ..++..+.++++++|+++|+++.+.+. ..+.+..
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~ 81 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGM 81 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEE
Confidence 458999999999999999999999999999999886532 125667899999999999999998765 4566666
Q ss_pred EEEEcCCCceeEEeccCC-CCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcE
Q 044609 77 FVTNLGTGATQELSYAGK-SGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTI 152 (232)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~ 152 (232)
.++.... ...+.+... .+. +...+.++|..+.+.|.+.+. +++++++++|++++.++ +. +.+++.+|++
T Consensus 82 ~~~~~~~--~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~---~~-v~v~~~~g~~ 154 (400)
T PRK08013 82 EVWDKDS--FGRIAFDDQSMGY-SHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE---NE-AFLTLKDGSM 154 (400)
T ss_pred EEEeCCC--CceEEEcccccCC-CccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC---Ce-EEEEEcCCCE
Confidence 6654321 112222211 111 233568999999999988763 68999999999998764 34 7788889999
Q ss_pred EEccEEEecCCCchhhhhhhcCCCCcc-cceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCe
Q 044609 153 IKAKVLIGCDGVHSMVAQWLGLSESIN-SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRD 220 (232)
Q Consensus 153 ~~a~~vV~A~G~~S~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 220 (232)
++||+||+|||.+|.+|+.++.+.... +.+.++.+.+....+. ....+..|.+++ .++++|++++.
T Consensus 155 i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~g-~~~~~p~~~~~ 221 (400)
T PRK08013 155 LTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPH-DAVARQVFHGDG-ILAFLPLSDPH 221 (400)
T ss_pred EEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCC-CCEEEEEEcCCC-CEEEEECCCCC
Confidence 999999999999999999998875543 3455555554433221 122344565556 57788998765
No 4
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.98 E-value=1.2e-29 Score=202.74 Aligned_cols=204 Identities=21% Similarity=0.267 Sum_probs=154.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC----cCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL----RATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL 81 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~----~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 81 (232)
+||+||||||+|+++|+.|++.|++|+|+|+.+.. ...++++.+++++.++|+++|+++.+.....+.....+++.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 58999999999999999999999999999997532 23478999999999999999999998777777777766653
Q ss_pred CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEE
Q 044609 82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVL 158 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~v 158 (232)
.......++. ... ...++.++|..|.+.|.+.+. +++++++++++++..++ +. +.+.+.++ +++||+|
T Consensus 82 ~g~~~~~~~~--~~~--~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~---~~-v~v~~~~~-~~~adlv 152 (374)
T PRK06617 82 KASEILDLRN--DAD--AVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHN---DY-SIIKFDDK-QIKCNLL 152 (374)
T ss_pred CCceEEEecC--CCC--CCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC---Ce-EEEEEcCC-EEeeCEE
Confidence 3222233322 111 234678999999999998764 47899999999998764 33 66778776 8999999
Q ss_pred EecCCCchhhhhhhcCCCCcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCe
Q 044609 159 IGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRD 220 (232)
Q Consensus 159 V~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 220 (232)
|+|||.+|.+|+.++.+......+.++.+.+....++ .+..++.|...|+ ++++|++++.
T Consensus 153 IgADG~~S~vR~~l~~~~~~~~y~~~~~~~v~~~~~~-~~~~~~~~~~~g~-~~~lPl~~~~ 212 (374)
T PRK06617 153 IICDGANSKVRSHYFANEIEKPYQTALTFNIKHEKPH-ENCAMEHFLPLGP-FALLPLKDQY 212 (374)
T ss_pred EEeCCCCchhHHhcCCCcccccCCeEEEEEEeccCCC-CCEEEEEecCCCC-EEEeECCCCC
Confidence 9999999999999976643333366666665543322 2234566666666 8889999875
No 5
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.97 E-value=1.4e-29 Score=206.03 Aligned_cols=216 Identities=20% Similarity=0.284 Sum_probs=156.9
Q ss_pred ccEEEECCCHHHHHHHHHHHh----CCCcEEEEecCCCCc------------CcceeeeecccHHHHHHHcCChHHHHhh
Q 044609 6 EDVVIIGAGIAGLATAVALRR----LGIKALVLEKSDGLR------------ATGAALTLSPNAWLALDALGVSHKLTSV 69 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~----~g~~v~viE~~~~~~------------~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 69 (232)
|||+||||||+|+++|+.|++ +|++|+|||+.+.+. ..++++.+.++++++|+++|+++.+.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999999 899999999954332 1357899999999999999999998765
Q ss_pred c-cCceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC-----CCeEEeCceEEEEEec----CCCC
Q 044609 70 Y-APAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP-----DDTIQFSSKIAAIDSQ----TLNG 139 (232)
Q Consensus 70 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~i~~~~~v~~i~~~----~~~g 139 (232)
. .+...+.++... + ....++....+. ....+.+++..+.+.|.+.+. +++++++++|++++.. ++++
T Consensus 81 ~~~~~~~~~~~~~~-~-~~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~ 157 (437)
T TIGR01989 81 RIQPFGRMQVWDGC-S-LALIRFDRDNGK-EDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNS 157 (437)
T ss_pred cCCceeeEEEecCC-C-CceEEeecCCCC-CceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCC
Confidence 3 566666654422 2 222333322221 333567899999998887653 3789999999999752 1113
Q ss_pred CccEEEEeCCCcEEEccEEEecCCCchhhhhhhcCCCCcc-cceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCC
Q 044609 140 SSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESIN-SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLND 218 (232)
Q Consensus 140 ~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 218 (232)
.. +.|++.+|++++||+||+|||.+|.+|+.++.+..+. +.+.++.+.+...........++.|..++. ++++|+++
T Consensus 158 ~~-v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g~-~~~lPl~~ 235 (437)
T TIGR01989 158 NW-VHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTGP-IALLPLPD 235 (437)
T ss_pred Cc-eEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCCC-EEEeECCC
Confidence 44 7888899999999999999999999999999886654 344555555554332222345666666665 77899998
Q ss_pred CeEEEEEE
Q 044609 219 RDVYWFLN 226 (232)
Q Consensus 219 ~~~~~~~~ 226 (232)
+..+|++.
T Consensus 236 ~~~~~~~~ 243 (437)
T TIGR01989 236 NNSTLVWS 243 (437)
T ss_pred CCEEEEEe
Confidence 87655443
No 6
>PRK07045 putative monooxygenase; Reviewed
Probab=99.97 E-value=3.2e-29 Score=201.47 Aligned_cols=221 Identities=21% Similarity=0.230 Sum_probs=155.3
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccC-ceeeEEE
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAP-AKRVFVT 79 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~ 79 (232)
|++.++||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..+.+++.++|+++|+++.+...... ......+
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 80 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY 80 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEe
Confidence 777889999999999999999999999999999999998866556677999999999999999998775543 3333333
Q ss_pred EcCCCce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEc
Q 044609 80 NLGTGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKA 155 (232)
Q Consensus 80 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a 155 (232)
..+.. ..+++..... ......+.|..+.+.|.+.+. +++++++++|++++.+++ +.. +.|++.+|+++.|
T Consensus 81 --~~g~~~~~~~~~~~~~--~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~-~~v~~~~g~~~~~ 154 (388)
T PRK07045 81 --HDKELIASLDYRSASA--LGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTV-TSVTLSDGERVAP 154 (388)
T ss_pred --cCCcEEEEecCCcccc--CCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcE-EEEEeCCCCEEEC
Confidence 23433 4444432211 111235789999999988753 689999999999988653 333 5788889999999
Q ss_pred cEEEecCCCchhhhhh-hcCCCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEec
Q 044609 156 KVLIGCDGVHSMVAQW-LGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRY 228 (232)
Q Consensus 156 ~~vV~A~G~~S~~r~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 228 (232)
|+||+|||.+|.+|+. ++.+... .+....+.+.+......+ .....++..++.+++++|.+++..++++.++
T Consensus 155 ~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 228 (388)
T PRK07045 155 TVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVR-ECNRLYVDSNQGLAYFYPIGDQATRLVVSFP 228 (388)
T ss_pred CEEEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCcc-ccceEEEcCCCceEEEEEcCCCcEEEEEEec
Confidence 9999999999999996 4544221 122223344444333221 1122233333455678999888777766554
No 7
>PRK07588 hypothetical protein; Provisional
Probab=99.97 E-value=4.1e-29 Score=201.03 Aligned_cols=216 Identities=20% Similarity=0.248 Sum_probs=158.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCce
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGAT 86 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (232)
||+||||||+|+++|+.|+++|++|+|+||.+.....+.++.++++++++|+++|+++.+.+.+.+...+.++... +..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~-g~~ 80 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT-GRR 80 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC-CCE
Confidence 7999999999999999999999999999999887777888999999999999999999998877777777766533 333
Q ss_pred -eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC-CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609 87 -QELSYAGKSGRIGSGLRSVHRQSLLEALADELP-DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV 164 (232)
Q Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~ 164 (232)
..+++......++.....++|..|.+.|.+.++ +++++++++|++++.++ +. +.|.+.+|+++++|+||+|||.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~~d~vIgADG~ 156 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHR---DG-VRVTFERGTPRDFDLVIGADGL 156 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECC---Ce-EEEEECCCCEEEeCEEEECCCC
Confidence 344433221111223457999999999988766 58999999999998764 44 7788899999999999999999
Q ss_pred chhhhhhhc-CCC--CcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEec
Q 044609 165 HSMVAQWLG-LSE--SINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRY 228 (232)
Q Consensus 165 ~S~~r~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 228 (232)
+|.+|+.+. ... +.+.+...+........+ .....+..|.+++.+++++|++++..++++.+.
T Consensus 157 ~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~ 222 (391)
T PRK07588 157 HSHVRRLVFGPERDFEHYLGCKVAACVVDGYRP-RDERTYVLYNEVGRQVARVALRGDRTLFLFIFR 222 (391)
T ss_pred CccchhhccCCccceEEEcCcEEEEEEcCCCCC-CCCceEEEEeCCCCEEEEEecCCCCeEEEEEEE
Confidence 999999763 221 122222222222211111 112335556667777889999888765555543
No 8
>PRK05868 hypothetical protein; Validated
Probab=99.97 E-value=1.2e-28 Score=196.59 Aligned_cols=215 Identities=20% Similarity=0.222 Sum_probs=154.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCce
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGAT 86 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (232)
||+||||||+|+++|+.|+++|++|+|+||.+.+...+.++.+.++++++|+++|+++.+.+...+.....+++.. +..
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~-g~~ 81 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD-GNE 81 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC-CCE
Confidence 8999999999999999999999999999999988878888999999999999999999988777777777766543 333
Q ss_pred -eEEeccCCCCC-CCCceeeeehHHHHHHHhhhCC-CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCC
Q 044609 87 -QELSYAGKSGR-IGSGLRSVHRQSLLEALADELP-DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDG 163 (232)
Q Consensus 87 -~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G 163 (232)
.........+. +......+.|..|.+.|.+.++ +++++++++|++++.++ +. +.|++.+|++++||+||+|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~---~~-v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDG---DS-VRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecC---Ce-EEEEECCCCeEEeCEEEECCC
Confidence 22111111110 1122456889999999887654 78999999999998653 44 788899999999999999999
Q ss_pred CchhhhhhhcCCCCc-ccceeEEEEeeecCCCCCCccceeE-EEecCeEEEEEEcCCCeE-EEEEEe
Q 044609 164 VHSMVAQWLGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQ-FVGVGFRAGFIPLNDRDV-YWFLNR 227 (232)
Q Consensus 164 ~~S~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~-~~~~~~ 227 (232)
.+|.+|+.+..+... ......+.+....+...+. ..+.. +.+++.++.++|..++.. +.++.+
T Consensus 158 ~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 223 (372)
T PRK05868 158 LHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLEL-DYWQTWHYGDSTMAGVYSARNNTEARAALAF 223 (372)
T ss_pred CCchHHHHhcCCcccceeecceEEEEEEcCCCCCC-CcceEEEecCCcEEEEEecCCCCceEEEEEE
Confidence 999999988432222 1122233334444433222 22333 357777788899887543 333433
No 9
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.97 E-value=6e-29 Score=200.44 Aligned_cols=218 Identities=24% Similarity=0.328 Sum_probs=158.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+||||||+|+++|+.|+++|++|+|+||.+.+...++++.++++++++|+++|+++.+...........+.......
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 58999999999999999999999999999999888778899999999999999999999987766554444333211111
Q ss_pred e-eEEeccCC-CCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEe---CCCcEEEccE
Q 044609 86 T-QELSYAGK-SGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINL---GDSTIIKAKV 157 (232)
Q Consensus 86 ~-~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~---~~g~~~~a~~ 157 (232)
. ...+.... ...+......++|..|.+.|.+.+. +++++++++|+++..++ .. +.+++ .++++++||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~---~~-v~v~~~~~~~~~~~~adl 158 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTG---NS-ITATIIRTNSVETVSAAY 158 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCC---Cc-eEEEEEeCCCCcEEecCE
Confidence 1 11111111 1101222346899999999998763 67899999999998754 33 55554 3345899999
Q ss_pred EEecCCCchhhhhhhcCCCCcccceeEEEEeeecCCCC-------CCccceeEEEecCeEEEEEEcCCCeEEEEEEe
Q 044609 158 LIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGH-------GLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNR 227 (232)
Q Consensus 158 vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 227 (232)
||+|||.+|.+|+.++...+.+.++.+|++.+...... +.......|++++..++++|++++..++++.+
T Consensus 159 vIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~ 235 (400)
T PRK06475 159 LIACDGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAI 235 (400)
T ss_pred EEECCCccHhHHhhcCCCCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEE
Confidence 99999999999999976666777888888875533211 11122455667777788999998876666543
No 10
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.97 E-value=1.2e-28 Score=199.11 Aligned_cols=210 Identities=21% Similarity=0.268 Sum_probs=152.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CCCc----CcceeeeecccHHHHHHHcCChHHHHhh-ccCceeeE
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS-DGLR----ATGAALTLSPNAWLALDALGVSHKLTSV-YAPAKRVF 77 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~-~~~~----~~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~ 77 (232)
..+||+||||||+|+++|+.|+++|++|+|+|+. +.+. ...++..+.++++++|+++|+++.+.+. ..+...+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~ 82 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAME 82 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEE
Confidence 4689999999999999999999999999999996 3221 2347788999999999999999998764 56666666
Q ss_pred EEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEE
Q 044609 78 VTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIK 154 (232)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~ 154 (232)
++.... .....+.......+...+.+.+..+.+.|.+.+. +++++++++|++++.++ .. +.|++.+|++++
T Consensus 83 ~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~---~~-~~v~~~~g~~~~ 156 (405)
T PRK08850 83 VWEQDS--FARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGE---SE-AWLTLDNGQALT 156 (405)
T ss_pred EEeCCC--CceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC---Ce-EEEEECCCCEEE
Confidence 654321 2222222111100223557888888888887653 68999999999998764 33 778888999999
Q ss_pred ccEEEecCCCchhhhhhhcCCCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeE
Q 044609 155 AKVLIGCDGVHSMVAQWLGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDV 221 (232)
Q Consensus 155 a~~vV~A~G~~S~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 221 (232)
||+||+|||.+|.+|+.++.+.+. .+++.++.+.+..+.+. +....+++.++.+++++|++++..
T Consensus 157 a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~g~~~~lp~~~~~~ 222 (405)
T PRK08850 157 AKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPH--NSVARQIFTPQGPLAFLPMSEPNM 222 (405)
T ss_pred eCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCC--CCEEEEEEcCCCceEEEECCCCCe
Confidence 999999999999999999877443 35666777766544322 222233444444578899987543
No 11
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.97 E-value=1.4e-28 Score=197.99 Aligned_cols=218 Identities=21% Similarity=0.288 Sum_probs=154.8
Q ss_pred CCc-ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC-----cceeeeecccHHHHHHHcCChHHHHhh-ccCc
Q 044609 1 MEM-VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA-----TGAALTLSPNAWLALDALGVSHKLTSV-YAPA 73 (232)
Q Consensus 1 m~~-~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~-----~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~ 73 (232)
|.+ +.+||+||||||+|+++|+.|+++|++|+||||.+.+.. ..+...+.+++.++|+++|+++.+.+. ..+.
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~ 80 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPY 80 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcc
Confidence 444 458999999999999999999999999999999875431 235578899999999999999998763 5556
Q ss_pred eeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCc
Q 044609 74 KRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDST 151 (232)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~ 151 (232)
....++.........++...... ....+.+++..+.+.|.+.+. +++++++++|++++.++ .. +.+++.+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~---~~-v~v~~~~g~ 154 (392)
T PRK08773 81 RRMRVWDAGGGGELGFDADTLGR--EQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA---DR-VRLRLDDGR 154 (392)
T ss_pred cEEEEEeCCCCceEEechhccCC--CcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC---Ce-EEEEECCCC
Confidence 55555443222222232221111 233567899999999988764 78999999999998764 34 778888888
Q ss_pred EEEccEEEecCCCchhhhhhhcCCCCcc-cceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEE
Q 044609 152 IIKAKVLIGCDGVHSMVAQWLGLSESIN-SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN 226 (232)
Q Consensus 152 ~~~a~~vV~A~G~~S~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 226 (232)
++.||+||+|||.+|.+|+.++.+.+.. +.+..+...+....+. ....+..|..++. ++++|++++..++++.
T Consensus 155 ~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~g~-~~~lP~~~~~~~~~w~ 228 (392)
T PRK08773 155 RLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPH-QATAWQRFLPTGP-LALLPFADGRSSIVWT 228 (392)
T ss_pred EEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCC-CCEEEEEeCCCCc-EEEEECCCCceEEEEE
Confidence 9999999999999999999998775432 2333343333332222 1233445555554 7899999887655443
No 12
>PRK09126 hypothetical protein; Provisional
Probab=99.97 E-value=9.3e-29 Score=199.17 Aligned_cols=217 Identities=19% Similarity=0.272 Sum_probs=154.3
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc-----CcceeeeecccHHHHHHHcCChHHHHhhc-cCceee
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR-----ATGAALTLSPNAWLALDALGVSHKLTSVY-APAKRV 76 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~~~ 76 (232)
||++||+||||||+|+++|+.|+++|++|+|+||.+.+. ..++++.+.+++.+.|+++|+++.+.... .+....
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~ 80 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDA 80 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceE
Confidence 457999999999999999999999999999999998642 34567788899999999999998876543 344455
Q ss_pred EEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEE
Q 044609 77 FVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTII 153 (232)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~ 153 (232)
.++..... ..+.+...........+.+++..+.+.|.+.+ .+++++++++|++++.++ .. +.|.+.+|+++
T Consensus 81 ~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~---~~-~~v~~~~g~~~ 154 (392)
T PRK09126 81 KVLNGRSP--FALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDD---DG-AQVTLANGRRL 154 (392)
T ss_pred EEEcCCCC--ceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC---Ce-EEEEEcCCCEE
Confidence 55432221 22233211110022345678888888888765 378999999999998764 33 67888889899
Q ss_pred EccEEEecCCCchhhhhhhcCCCC-cccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEe
Q 044609 154 KAKVLIGCDGVHSMVAQWLGLSES-INSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNR 227 (232)
Q Consensus 154 ~a~~vV~A~G~~S~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 227 (232)
.||+||+|||.+|.+|+.++.+.. ..+++..+...+.... +.......+++.+..++++|++++.+++.+.+
T Consensus 155 ~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~ 227 (392)
T PRK09126 155 TARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHEL--PHHHTAWEWFGYGQTLALLPLNGHLSSLVLTL 227 (392)
T ss_pred EeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccC--CCCCEEEEEecCCCCeEEeECCCCCEEEEEEC
Confidence 999999999999999999976533 3344444444333222 11223345566666788999999877666544
No 13
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.97 E-value=1.2e-28 Score=198.16 Aligned_cols=216 Identities=20% Similarity=0.239 Sum_probs=156.5
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN 80 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 80 (232)
|+|.++||+||||||+|+++|+.|+++|++|+||||.+.+.. .++..+.+++.++|+++|+++.+.....+.....++.
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~-~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~ 81 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD-LRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVD 81 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCC-cchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEe
Confidence 788889999999999999999999999999999999876533 4667788889999999999999888777777777765
Q ss_pred cCCCcee--EEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEcc
Q 044609 81 LGTGATQ--ELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAK 156 (232)
Q Consensus 81 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~ 156 (232)
....... ...+...........+.+++..+.+.|.+.+. +...+++++|++++.++ +. +.|++.+|++++||
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~---~~-~~v~~~~g~~~~a~ 157 (388)
T PRK07494 82 ATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPRE---DE-VTVTLADGTTLSAR 157 (388)
T ss_pred CCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcC---Ce-EEEEECCCCEEEEe
Confidence 4322111 12222111000233567899999999988764 22338899999998764 34 77888888899999
Q ss_pred EEEecCCCchhhhhhhcCCCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEE
Q 044609 157 VLIGCDGVHSMVAQWLGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYW 223 (232)
Q Consensus 157 ~vV~A~G~~S~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 223 (232)
+||+|||.+|.+|+.++.+... .+++.++.+.+..+.++ ....+..+...+. ++++|+++++..+
T Consensus 158 ~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~g~-~~~~Pl~~~~~~~ 223 (388)
T PRK07494 158 LVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPH-QNVSTEFHTEGGP-FTQVPLPGRRSSL 223 (388)
T ss_pred EEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCC-CCEEEEEeCCCCc-EEEEECCCCcEEE
Confidence 9999999999999999877443 34566666555543322 1223444454554 7789999876433
No 14
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.97 E-value=2e-28 Score=204.00 Aligned_cols=220 Identities=21% Similarity=0.287 Sum_probs=158.3
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG 82 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (232)
++.+||+||||||+|+++|+.|+++|++|+||||.+.+...++++.++++++++|+++|+.+.+.....+.....++..
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~- 86 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDA- 86 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcC-
Confidence 3468999999999999999999999999999999998877788999999999999999999998887777666666543
Q ss_pred CCce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeC--CC--cEEE
Q 044609 83 TGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLG--DS--TIIK 154 (232)
Q Consensus 83 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~--~g--~~~~ 154 (232)
.+.. ..++.........+....+++..+.+.|.+.+ ++++++++++|+++++++ +. +.+++. +| .+++
T Consensus 87 ~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~---~~-v~v~~~~~~G~~~~i~ 162 (538)
T PRK06183 87 KGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDD---DG-VTVTLTDADGQRETVR 162 (538)
T ss_pred CCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC---Ce-EEEEEEcCCCCEEEEE
Confidence 3333 33432111110022335678888888888765 378999999999998875 33 555554 56 4799
Q ss_pred ccEEEecCCCchhhhhhhcCCCCcccceeEEEEe-eecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEe
Q 044609 155 AKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGL-AVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNR 227 (232)
Q Consensus 155 a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 227 (232)
||+||+|||.+|.+|+.++...+.......|... +..............+++++..+.++|++++..+|.+..
T Consensus 163 ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~ 236 (538)
T PRK06183 163 ARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFML 236 (538)
T ss_pred EEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEe
Confidence 9999999999999999998765544333333321 112211111223345566666688899999887776554
No 15
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.97 E-value=3.2e-28 Score=196.33 Aligned_cols=218 Identities=26% Similarity=0.338 Sum_probs=162.6
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN 80 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 80 (232)
|+ +..||+||||||+|+++|..|++.|++|+|+||.+.+...++++.+++++.++|+++|+.+.+.........+.++.
T Consensus 1 ~~-~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 79 (396)
T PRK08163 1 MT-KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMD 79 (396)
T ss_pred CC-CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEe
Confidence 66 56899999999999999999999999999999999888888999999999999999999998887766666666655
Q ss_pred cCCCce-eEEeccCCC-CCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEc
Q 044609 81 LGTGAT-QELSYAGKS-GRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKA 155 (232)
Q Consensus 81 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a 155 (232)
...+.. ..+++.... ..+......++|..+.+.|.+.+. +++++++++|+++..++ .. +.+.+.+|+++.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~---~~-v~v~~~~g~~~~a 155 (396)
T PRK08163 80 AVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG---DG-VTVFDQQGNRWTG 155 (396)
T ss_pred CCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC---Cc-eEEEEcCCCEEec
Confidence 433333 333332110 001223456899999999998764 47899999999998653 34 7788889989999
Q ss_pred cEEEecCCCchhhhhhh-cCCCCcccceeEEEEeeecCCCCCC--ccceeEEEecCeEEEEEEcCCCeEEEE
Q 044609 156 KVLIGCDGVHSMVAQWL-GLSESINSGRSSVRGLAVFPHGHGL--NQDIRQFVGVGFRAGFIPLNDRDVYWF 224 (232)
Q Consensus 156 ~~vV~A~G~~S~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~ 224 (232)
|+||+|||.+|.+|+.+ +. .+.+.++..+++.+...+.... ......+.+++.+++++|++++..+.+
T Consensus 156 d~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~ 226 (396)
T PRK08163 156 DALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNL 226 (396)
T ss_pred CEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEE
Confidence 99999999999999987 44 4455667777776654322111 112334556666788899988765433
No 16
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.97 E-value=2.4e-28 Score=198.16 Aligned_cols=214 Identities=21% Similarity=0.252 Sum_probs=149.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC--cceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA--TGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL 81 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~--~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 81 (232)
..+||+||||||+|+++|+.|+++|++|+|+||.+.+.. .++++.+.+++.++|+++|+++++.....+.....++..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 358999999999999999999999999999999987643 467889999999999999999998887777766666542
Q ss_pred CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCC-C--cEEEc
Q 044609 82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGD-S--TIIKA 155 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-g--~~~~a 155 (232)
.......+....... ....+...+..+.+.|.+.+. +++++++++|++++.++ +. +.|++.+ + .+++|
T Consensus 97 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~---~~-~~v~~~~~~~~~~i~a 170 (415)
T PRK07364 97 DYPGVVKFQPTDLGT--EALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ---DA-ATVTLEIEGKQQTLQS 170 (415)
T ss_pred CCCceeeeccccCCC--CccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC---Ce-eEEEEccCCcceEEee
Confidence 211112222211111 122334455578888877653 68999999999998764 33 5566653 2 36999
Q ss_pred cEEEecCCCchhhhhhhcCCCCccc-ceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEE
Q 044609 156 KVLIGCDGVHSMVAQWLGLSESINS-GRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFL 225 (232)
Q Consensus 156 ~~vV~A~G~~S~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 225 (232)
|+||+|||.+|.+|+.++.....+. ...++.+.+..+... ....+..|+..+. ++++|.+++..++++
T Consensus 171 dlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~~~p~~~~~~~~~~ 239 (415)
T PRK07364 171 KLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPH-NDIAYERFWPSGP-FAILPLPGNRCQIVW 239 (415)
T ss_pred eEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCC-CCEEEEEecCCCC-eEEeECCCCCEEEEE
Confidence 9999999999999999987654432 234444444433321 1233445666665 778999988765543
No 17
>PRK08244 hypothetical protein; Provisional
Probab=99.97 E-value=2.1e-28 Score=202.14 Aligned_cols=211 Identities=18% Similarity=0.202 Sum_probs=153.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (232)
++||+||||||+|+++|+.|+++|++|+||||.+.+...++++.++++++++|+++|+.+.+.+...+.....+.... .
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~-~ 80 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLD-T 80 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccc-c
Confidence 489999999999999999999999999999999988778899999999999999999999998877666655443211 1
Q ss_pred ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe--CCC-cEEEccEEE
Q 044609 85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL--GDS-TIIKAKVLI 159 (232)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~--~~g-~~~~a~~vV 159 (232)
.+++...... ......+++..+.+.|.+.+. ++++++++++++++.++ +. +.+++ .+| .+++||+||
T Consensus 81 ---~~~~~~~~~~-~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-v~v~~~~~~g~~~i~a~~vV 152 (493)
T PRK08244 81 ---RLDFSALDTS-SNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG---DG-VEVVVRGPDGLRTLTSSYVV 152 (493)
T ss_pred ---cCCcccCCCC-CCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcC---Ce-EEEEEEeCCccEEEEeCEEE
Confidence 1222211111 223456888999998887664 78999999999998764 33 44444 356 479999999
Q ss_pred ecCCCchhhhhhhcCCCCcc-cceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEE
Q 044609 160 GCDGVHSMVAQWLGLSESIN-SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN 226 (232)
Q Consensus 160 ~A~G~~S~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 226 (232)
+|||.+|.+|+.++++.++. +.+..+.+.+...... ......++.++.+++++|++++..++.+.
T Consensus 153 gADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~P~~~~~~~~~~~ 218 (493)
T PRK08244 153 GADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPP--PSSVLSLCTREGGVMIVPLSGGIYRVLII 218 (493)
T ss_pred ECCCCChHHHHhcCCCccCCCcceEEEEEEEEecCCC--CcceeEEEeCCceEEEEECCCCeEEEEEE
Confidence 99999999999998776543 2334444444333221 22233445555568899999887665543
No 18
>PRK06847 hypothetical protein; Provisional
Probab=99.97 E-value=2.9e-28 Score=195.20 Aligned_cols=219 Identities=27% Similarity=0.383 Sum_probs=164.7
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN 80 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 80 (232)
|. +..||+||||||+|+++|+.|++.|++|+|+||.+.+...+.++.+++++.+.|+++|+.+.+.+...+.....++.
T Consensus 1 m~-~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 79 (375)
T PRK06847 1 MA-AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD 79 (375)
T ss_pred CC-CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC
Confidence 66 35799999999999999999999999999999998887788999999999999999999999888777776666654
Q ss_pred cCCCce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccE
Q 044609 81 LGTGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKV 157 (232)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~ 157 (232)
. .+.. ..++.....+...+....+.|..+.+.|.+.+. +++++++++|++++.++ .. +.+.+.+|+++.||+
T Consensus 80 ~-~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-~~v~~~~g~~~~ad~ 154 (375)
T PRK06847 80 P-DGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD---DG-VTVTFSDGTTGRYDL 154 (375)
T ss_pred C-CCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC---CE-EEEEEcCCCEEEcCE
Confidence 3 2332 232222111100123346789999999988764 78999999999998763 34 778888999999999
Q ss_pred EEecCCCchhhhhhh-cCC-CCcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEec
Q 044609 158 LIGCDGVHSMVAQWL-GLS-ESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRY 228 (232)
Q Consensus 158 vV~A~G~~S~~r~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 228 (232)
||+|||.+|.+|+.+ +.. .+.+.+...|.+.+..+.. . .....+.+++..+.++|.+++..++++...
T Consensus 155 vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 224 (375)
T PRK06847 155 VVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPAE--V-DRSLMYLGPTTKAGVVPLSEDLMYLFVTEP 224 (375)
T ss_pred EEECcCCCcchhhHhcCCCCCceeccceEEEEEecCCCC--c-cceEEEeCCCcEEEEEcCCCCeEEEEEecc
Confidence 999999999999887 543 4556677777665543321 1 223455666677888999988877666543
No 19
>PRK07190 hypothetical protein; Provisional
Probab=99.97 E-value=3.8e-28 Score=198.99 Aligned_cols=219 Identities=21% Similarity=0.280 Sum_probs=154.9
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN 80 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 80 (232)
|++..+||+||||||+|+++|+.|+++|++|+||||.+.+...+++..+.+.++++|+++|+++.+.....+......+.
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWA 80 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEec
Confidence 77788999999999999999999999999999999999887788999999999999999999999887766665444332
Q ss_pred cCCCce-eEE-e-ccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEc
Q 044609 81 LGTGAT-QEL-S-YAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKA 155 (232)
Q Consensus 81 ~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a 155 (232)
.+.. ... . +....+...+....+.+..+.+.|.+.+. +++++++++|++++.++ +. +.+.+.+|++++|
T Consensus 81 --~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~---~~-v~v~~~~g~~v~a 154 (487)
T PRK07190 81 --NGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQ---AG-CLTTLSNGERIQS 154 (487)
T ss_pred --CCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC---Ce-eEEEECCCcEEEe
Confidence 2222 110 0 11111111222345778888888877654 79999999999998875 33 5666778889999
Q ss_pred cEEEecCCCchhhhhhhcCCCCcccceeEEEEe-eecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEE
Q 044609 156 KVLIGCDGVHSMVAQWLGLSESINSGRSSVRGL-AVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFL 225 (232)
Q Consensus 156 ~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 225 (232)
++||+|||.+|.+|+.++++.++......|... .......+..+....+..+...++++|.+++..++++
T Consensus 155 ~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~ 225 (487)
T PRK07190 155 RYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYV 225 (487)
T ss_pred CEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEE
Confidence 999999999999999999887765443333322 2222211111222233334444777899887655443
No 20
>PRK06184 hypothetical protein; Provisional
Probab=99.97 E-value=3e-28 Score=201.56 Aligned_cols=214 Identities=18% Similarity=0.221 Sum_probs=152.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT 83 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (232)
.++||+||||||+|+++|+.|+++|++|+||||.+.+...+++..++++++++|+++|+.+.+.+...+......+.. .
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~-~ 80 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRD-D 80 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeC-C
Confidence 358999999999999999999999999999999998877788999999999999999999999887776665555432 2
Q ss_pred CceeEEeccC----CCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe---CCCcEEE
Q 044609 84 GATQELSYAG----KSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL---GDSTIIK 154 (232)
Q Consensus 84 ~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~---~~g~~~~ 154 (232)
+....+.+.. ......+....+.+..+.+.|.+.+. +++++++++|++++.++ +. +.+++ .++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~---~~-v~v~~~~~~~~~~i~ 156 (502)
T PRK06184 81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA---DG-VTARVAGPAGEETVR 156 (502)
T ss_pred ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC---Cc-EEEEEEeCCCeEEEE
Confidence 2222222211 01100123456788888888888764 78999999999998764 33 55555 4566899
Q ss_pred ccEEEecCCCchhhhhhhcCCCCcccce--eEEEEeeecCCCCCCccceeEEEecC-eEEEEEEcCCCeEEEE
Q 044609 155 AKVLIGCDGVHSMVAQWLGLSESINSGR--SSVRGLAVFPHGHGLNQDIRQFVGVG-FRAGFIPLNDRDVYWF 224 (232)
Q Consensus 155 a~~vV~A~G~~S~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~ 224 (232)
||+||+|||.+|.+|+.+++...+.... ..+.+.+..... ....+..|..++ .++.++|++++..+++
T Consensus 157 a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 227 (502)
T PRK06184 157 ARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGL--DRDAWHQWPDGDMGMIALCPLPGTDLFQI 227 (502)
T ss_pred eCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecC--CCcceEEccCCCCcEEEEEEccCCCeEEE
Confidence 9999999999999999999876654432 223332322221 123344555443 5677899987654433
No 21
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.97 E-value=2.8e-28 Score=197.05 Aligned_cols=217 Identities=19% Similarity=0.268 Sum_probs=149.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC--------cCcceeeeecccHHHHHHHcCChHHHHhh-ccCcee
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL--------RATGAALTLSPNAWLALDALGVSHKLTSV-YAPAKR 75 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~--------~~~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~ 75 (232)
.+||+||||||+|+++|+.|+++|++|+|+|+.+.. ....++..+.++++++|+++|+++.+.+. ..+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 489999999999999999999999999999998631 11235678899999999999999988754 455566
Q ss_pred eEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEE
Q 044609 76 VFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTII 153 (232)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~ 153 (232)
..++... +. ...++.......+...+.+++..+.+.|.+.+. ++++++++++++++.++ +. +.|++.+|+++
T Consensus 82 ~~~~~~~-~~-~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-v~v~~~~g~~~ 155 (405)
T PRK05714 82 MQVWDGS-GT-GQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSG---DD-WLLTLADGRQL 155 (405)
T ss_pred EEEEcCC-CC-ceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC---Ce-EEEEECCCCEE
Confidence 6655432 22 223333211100223467888899988887764 68999999999998764 34 77888899899
Q ss_pred EccEEEecCCCchhhhhhhcCCCCcc-cceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCC--eEEEEEEecC
Q 044609 154 KAKVLIGCDGVHSMVAQWLGLSESIN-SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDR--DVYWFLNRYS 229 (232)
Q Consensus 154 ~a~~vV~A~G~~S~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~ 229 (232)
+||+||+|||.+|.+|+.++.+.+.+ +.+.++...+..+.+.. ...+..|.+++ +++++|++++ ..+..+.|..
T Consensus 156 ~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g-~~~~~P~~~~~~~~~~~~~~~~ 232 (405)
T PRK05714 156 RAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHR-ATAWQRFTDDG-PLAFLPLERDGDEHWCSIVWST 232 (405)
T ss_pred EeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCC-CEEEEEcCCCC-CeEEeeCCCCCCCCeEEEEEEC
Confidence 99999999999999999998764432 22333333333332221 23344555555 5889999753 2233344543
No 22
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.97 E-value=6.1e-29 Score=190.97 Aligned_cols=207 Identities=35% Similarity=0.575 Sum_probs=158.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (232)
+.+|+|||||++|+++|+.|+|+|++|+|+|+.+.++..+.++.++-+++++|+.+++.+.+.+...++.........++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg 81 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSG 81 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999998877776777
Q ss_pred ce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCc------eEEEEEecCCCCCccEEEEeCCCcEEEccE
Q 044609 85 AT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSS------KIAAIDSQTLNGSSAAIINLGDSTIIKAKV 157 (232)
Q Consensus 85 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~------~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~ 157 (232)
+. ..+++..... +......|..+.+.|.++.+..+++++. .+..++.. +.. ..+++.||.++++|+
T Consensus 82 ~~~~~~~~~~~~~---~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~---~~~-~~v~l~~g~~~~~dl 154 (420)
T KOG2614|consen 82 KEVSRILYGEPDE---YILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETL---GKK-LVVHLSDGTTVKGDL 154 (420)
T ss_pred CeeEecccCCchH---HHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeec---ccc-cceecCCCcEEEeeE
Confidence 75 6666653321 1233455667777777777755566554 33333332 343 667889999999999
Q ss_pred EEecCCCchhhhhhhcCCCCcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCe
Q 044609 158 LIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRD 220 (232)
Q Consensus 158 vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 220 (232)
+|+|||++|.+|+.++...|.+.++.+|++...++...++......+.++. +.+.|.+..+
T Consensus 155 ligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~~~~--~~~~~~~~~~ 215 (420)
T KOG2614|consen 155 LIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIYGNG--LHSWPRPGFH 215 (420)
T ss_pred EEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceecccCCe--EEEcccCCce
Confidence 999999999999999888899999999999887777665533333333333 4444444444
No 23
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.97 E-value=1.1e-27 Score=193.58 Aligned_cols=213 Identities=21% Similarity=0.316 Sum_probs=156.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCc--CcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGLR--ATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL 81 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 81 (232)
+||+||||||+|+++|+.|+++| ++|+|+||.+... ..+++..+.+++.++|+++|+++.+.....+.....++..
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 69999999999999999999995 9999999987643 3468999999999999999999999887777777766653
Q ss_pred CCCce---eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEcc
Q 044609 82 GTGAT---QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAK 156 (232)
Q Consensus 82 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~ 156 (232)
..... ....+........+..+.++|..+.+.|.+.+. +++++++++|++++.++ .. +.+++.+|.++.||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-v~v~~~~g~~~~ad 157 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD---EG-VTVTLSDGSVLEAR 157 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC---CE-EEEEECCCCEEEeC
Confidence 32221 112332211100233457899999999998765 78999999999998764 34 77888889899999
Q ss_pred EEEecCCCchhhhhhhcCCCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEE
Q 044609 157 VLIGCDGVHSMVAQWLGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWF 224 (232)
Q Consensus 157 ~vV~A~G~~S~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 224 (232)
+||+|||.+|.+|+.++..... .+++.++.+.+...... .+.....+..++. ++++|++++..++.
T Consensus 158 ~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~~~Pl~~~~~~~~ 224 (403)
T PRK07333 158 LLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPH-GGRAEEHFLPAGP-FAILPLKGNRSSLV 224 (403)
T ss_pred EEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCC-CCEEEEEeCCCCc-eEEeECCCCCeEEE
Confidence 9999999999999999876433 23445555544433321 1223344444454 78899999886543
No 24
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.96 E-value=1.4e-27 Score=191.62 Aligned_cols=208 Identities=20% Similarity=0.233 Sum_probs=144.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC--cC----cceeeeecccHHHHHHHcCChHHHHhh-ccCceeeE
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL--RA----TGAALTLSPNAWLALDALGVSHKLTSV-YAPAKRVF 77 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~--~~----~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~ 77 (232)
.+||+||||||+|+++|+.|+++|++|+|+|+.+.. .. ..+...++++++++|+++|+++.+... ..+...+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 489999999999999999999999999999987532 11 224568999999999999999988653 45555555
Q ss_pred EEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEE
Q 044609 78 VTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIK 154 (232)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~ 154 (232)
.+... .....+....... ....+.+.+..+.+.|.+.+ ++++++++++|++++.++ +. +.+++.+|.+++
T Consensus 83 ~~~~~-~~~~~~~~~~~~~--~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~---~~-~~v~~~~g~~~~ 155 (384)
T PRK08849 83 TWEHP-ECRTRFHSDELNL--DQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSA---EG-NRVTLESGAEIE 155 (384)
T ss_pred EEeCC-CceEEecccccCC--CccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcC---Ce-EEEEECCCCEEE
Confidence 44321 1112222111111 22235677777888887665 368999999999998764 34 778889999999
Q ss_pred ccEEEecCCCchhhhhhhcCCCCccc-ceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeE
Q 044609 155 AKVLIGCDGVHSMVAQWLGLSESINS-GRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDV 221 (232)
Q Consensus 155 a~~vV~A~G~~S~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 221 (232)
||+||+|||.+|.+|+.++.....+. .+.++.+.+....+ ..+..+..|+..++ ..++|++++..
T Consensus 156 ~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~g~-~~~~pl~~~~~ 221 (384)
T PRK08849 156 AKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQP-QQDITWQQFTPSGP-RSFLPLCGNQG 221 (384)
T ss_pred eeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCC-CCCEEEEEeCCCCC-EEEeEcCCCce
Confidence 99999999999999999987644432 33333333333222 22344566666666 45689987653
No 25
>PTZ00367 squalene epoxidase; Provisional
Probab=99.96 E-value=1.6e-27 Score=197.05 Aligned_cols=219 Identities=21% Similarity=0.232 Sum_probs=154.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG-LRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG 82 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (232)
.++||+||||||+|+++|+.|+++|++|+|+||.+. ......|..+++++.++|+++|+++.+.....+..+..+++.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~~~- 110 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDH- 110 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEEEC-
Confidence 458999999999999999999999999999999862 222346778999999999999999998887777777766653
Q ss_pred CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC-----CCCeEEeCceEEEEEecCCCC---Cc-cEEEEeCC----
Q 044609 83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL-----PDDTIQFSSKIAAIDSQTLNG---SS-AAIINLGD---- 149 (232)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~i~~~~~v~~i~~~~~~g---~~-~~~v~~~~---- 149 (232)
++....+++.. ......+++..+.+.|.+.+ ++++++. .+|+++..++. + .. .+.+...+
T Consensus 111 ~G~~~~i~~~~-----~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~-~~~~~v~gV~~~~~~~~~~ 183 (567)
T PTZ00367 111 KGKQVKLPYGA-----GASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGP-GFSERAYGVEYTEAEKYDV 183 (567)
T ss_pred CCCEEEecCCC-----CCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccC-ccCCeeEEEEEecCCcccc
Confidence 33333333321 22345678888888887765 3778865 47888765431 1 01 14444443
Q ss_pred -------------------CcEEEccEEEecCCCchhhhhhhcCCCCcccceeEEEEeeecCCCCCCccceeEEEecCeE
Q 044609 150 -------------------STIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFR 210 (232)
Q Consensus 150 -------------------g~~~~a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (232)
++++.||+||+|||.+|.+|+.++...+.+.....+++........+.......+++++.+
T Consensus 184 ~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gp 263 (567)
T PTZ00367 184 PENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGP 263 (567)
T ss_pred cccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCce
Confidence 5689999999999999999999976555554555555543322222222333456677778
Q ss_pred EEEEEcCCCeEEEEEEecCC
Q 044609 211 AGFIPLNDRDVYWFLNRYSP 230 (232)
Q Consensus 211 ~~~~p~~~~~~~~~~~~~~~ 230 (232)
++++|++++..++++.+..+
T Consensus 264 i~~yPl~~~~~r~lv~~~~~ 283 (567)
T PTZ00367 264 ILSYRLDDNELRVLVDYNKP 283 (567)
T ss_pred EEEEEcCCCeEEEEEEecCC
Confidence 99999999988877766543
No 26
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.96 E-value=2.6e-27 Score=191.89 Aligned_cols=214 Identities=24% Similarity=0.351 Sum_probs=153.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCc----eeeEEEEc
Q 044609 7 DVVIIGAGIAGLATAVALRRLG-IKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPA----KRVFVTNL 81 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----~~~~~~~~ 81 (232)
+|+|||||++||++|..|+++| ++|+|+||.+.....|.++.++++++++|+++|+.+.+....... ....+.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 699999999988888999999999999999999988876644221 22222221
Q ss_pred CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609 82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC 161 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A 161 (232)
.............. ......++|..|.+.|.+.+++..++++++|++++.++ +. +.+.+.+|.++.||+||+|
T Consensus 82 ~~~~~~~~~~~~~~---~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~---~~-~~v~~~~g~~~~ad~vVgA 154 (414)
T TIGR03219 82 NGSDASYLGATIAP---GVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQA---EE-VQVLFTDGTEYRCDLLIGA 154 (414)
T ss_pred ecCccceeeeeccc---cCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecC---Cc-EEEEEcCCCEEEeeEEEEC
Confidence 11111111111011 11123588999999999998877889999999998764 44 7888899999999999999
Q ss_pred CCCchhhhhhhc------CCCCcccceeEEEEeeecCCC----------CCCccceeEEEecCeEEEEEEcCCCeEEEEE
Q 044609 162 DGVHSMVAQWLG------LSESINSGRSSVRGLAVFPHG----------HGLNQDIRQFVGVGFRAGFIPLNDRDVYWFL 225 (232)
Q Consensus 162 ~G~~S~~r~~~~------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 225 (232)
||.+|.+|+.+. ...+.+.+..+|++++...+. .........+++.+.+++++|++++..++++
T Consensus 155 DG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~ 234 (414)
T TIGR03219 155 DGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVV 234 (414)
T ss_pred CCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCcEEEEE
Confidence 999999999872 123567788888887643221 0001123456677777888999998865544
Q ss_pred Ee
Q 044609 226 NR 227 (232)
Q Consensus 226 ~~ 227 (232)
.+
T Consensus 235 ~~ 236 (414)
T TIGR03219 235 AF 236 (414)
T ss_pred EE
Confidence 33
No 27
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.96 E-value=2.6e-27 Score=190.35 Aligned_cols=213 Identities=24% Similarity=0.331 Sum_probs=154.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc-----ceeeeecccHHHHHHHcCChHHHHh-hccCceeeEEEE
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT-----GAALTLSPNAWLALDALGVSHKLTS-VYAPAKRVFVTN 80 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~-----~~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~ 80 (232)
||+||||||+|+++|+.|+++|++|+|+||.+.++.. +++..+.+++.+.|+++|+++.+.+ ...+.....++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 7999999999999999999999999999999876432 4788999999999999999999887 666766666654
Q ss_pred cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--C-CeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccE
Q 044609 81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--D-DTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKV 157 (232)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~-~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~ 157 (232)
........++...... ....+.++|..+.+.|.+.+. + ++++++++|+++..++ .. +.+++.+|+++.+|+
T Consensus 81 ~~~~~~~~~~~~~~~~--~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~---~~-~~v~~~~g~~~~~~~ 154 (385)
T TIGR01988 81 GGSFGALHFDADEIGL--EALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS---DH-VELTLDDGQQLRARL 154 (385)
T ss_pred CCCCceEEechhhcCC--CccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC---Ce-eEEEECCCCEEEeeE
Confidence 3221112222111111 233567999999999998764 3 8999999999998764 34 778888998999999
Q ss_pred EEecCCCchhhhhhhcCCCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEe
Q 044609 158 LIGCDGVHSMVAQWLGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNR 227 (232)
Q Consensus 158 vV~A~G~~S~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 227 (232)
||+|||.+|.+|+.++.+.+. .+....+...+..+... ....+..+.++ ..++++|++++..++.+..
T Consensus 155 vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-g~~~~~p~~~~~~~~~~~~ 223 (385)
T TIGR01988 155 LVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPH-QGTAWERFTPT-GPLALLPLPDNRSSLVWTL 223 (385)
T ss_pred EEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCC-CCEEEEEecCC-CCEEEeECCCCCeEEEEEC
Confidence 999999999999999865433 23344444444433221 12223334444 4578899999876655543
No 28
>PRK07538 hypothetical protein; Provisional
Probab=99.96 E-value=7e-27 Score=189.23 Aligned_cols=214 Identities=25% Similarity=0.352 Sum_probs=152.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCce
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGAT 86 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (232)
||+||||||+|+++|+.|+++|++|+|+||.+.+...+.++.++++++++|+++|+.+.+.....+...+.++.. .+..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~-~g~~ 80 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNR-HGQR 80 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcC-CCCE
Confidence 799999999999999999999999999999988877889999999999999999999998877776666666543 2332
Q ss_pred -eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---C-CeEEeCceEEEEEecCCCCCccEEEEeCCC-----cEEEcc
Q 044609 87 -QELSYAGKSGRIGSGLRSVHRQSLLEALADELP---D-DTIQFSSKIAAIDSQTLNGSSAAIINLGDS-----TIIKAK 156 (232)
Q Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~-~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g-----~~~~a~ 156 (232)
...+.....++ ....+.++|..|.+.|.+.+. + .+++++++|++++.+++ . +.+.+.++ ++++||
T Consensus 81 ~~~~~~~~~~~~-~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~--~--~~~~~~~~~~g~~~~~~ad 155 (413)
T PRK07538 81 IWSEPRGLAAGY-DWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD--V--TVVFLGDRAGGDLVSVRGD 155 (413)
T ss_pred EeeccCCcccCC-CCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC--c--eEEEEeccCCCccceEEee
Confidence 22111111111 223456999999999987752 3 46999999999987642 2 33444332 489999
Q ss_pred EEEecCCCchhhhhhhcCC--CCcccceeEEEEeeecCCCCCCccceeEEEe-cCeEEEEEEcCCC-------eEEEEEE
Q 044609 157 VLIGCDGVHSMVAQWLGLS--ESINSGRSSVRGLAVFPHGHGLNQDIRQFVG-VGFRAGFIPLNDR-------DVYWFLN 226 (232)
Q Consensus 157 ~vV~A~G~~S~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-------~~~~~~~ 226 (232)
+||+|||.+|.+|+.+... .+.+.+...|++....+... ......+++ ++..+.++|+.++ .+.|.+.
T Consensus 156 lvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~ 233 (413)
T PRK07538 156 VLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFL--TGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAE 233 (413)
T ss_pred EEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCcccc--CCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEE
Confidence 9999999999999988533 45566777777765544321 122223333 3456888998763 4556655
Q ss_pred ec
Q 044609 227 RY 228 (232)
Q Consensus 227 ~~ 228 (232)
..
T Consensus 234 ~~ 235 (413)
T PRK07538 234 VR 235 (413)
T ss_pred Ec
Confidence 43
No 29
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.96 E-value=2.3e-27 Score=190.53 Aligned_cols=211 Identities=24% Similarity=0.319 Sum_probs=151.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCCCcCc----ceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609 7 DVVIIGAGIAGLATAVALRRLG-IKALVLEKSDGLRAT----GAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL 81 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~~~~~----~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 81 (232)
||+||||||+|+++|+.|+++| ++|+|+||.+.+... +++..+.+++.+.|+++|+.+.+.....+.....+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 999999999876443 46789999999999999999988776666665554432
Q ss_pred CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEE
Q 044609 82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVL 158 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~v 158 (232)
.......+....... ....+.++|..|.+.|.+.+. +++++++++|+++..++ .. +.+.+.+|+++.||+|
T Consensus 81 ~~~~~~~~~~~~~~~--~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~---~~-~~v~~~~g~~~~ad~v 154 (382)
T TIGR01984 81 GHFGATHLRASEFGL--PALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQ---DY-VRVTLDNGQQLRAKLL 154 (382)
T ss_pred CCCceEEechhhcCC--CccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC---Ce-EEEEECCCCEEEeeEE
Confidence 111111121111111 233567999999999998764 68999999999998764 33 7788888889999999
Q ss_pred EecCCCchhhhhhhcCCCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCC-eEEEEE
Q 044609 159 IGCDGVHSMVAQWLGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDR-DVYWFL 225 (232)
Q Consensus 159 V~A~G~~S~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~ 225 (232)
|+|||.+|.+|+.++.+.+. .+++.++...+....+. ....+..+..++ .++++|++++ .+.+++
T Consensus 155 V~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g-~~~~~p~~~~~~~~~~~ 221 (382)
T TIGR01984 155 IAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPH-QGCAFERFTPHG-PLALLPLKDNYRSSLVW 221 (382)
T ss_pred EEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCC-CCEEEEeeCCCC-CeEECcCCCCCCEEEEE
Confidence 99999999999999866433 34455665554433222 122333344444 4778999988 544433
No 30
>PRK07236 hypothetical protein; Provisional
Probab=99.96 E-value=4.4e-27 Score=188.88 Aligned_cols=201 Identities=23% Similarity=0.291 Sum_probs=147.1
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL 81 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 81 (232)
|+.++|+|||||++|+++|..|++.|++|+|+||.+.+ ...+.++.+.+++.++|+++|+.+.. ....+.....++.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~- 81 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIGVPSRERIYLD- 81 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccccCccceEEEe-
Confidence 44589999999999999999999999999999998754 34577889999999999999997754 3344444444433
Q ss_pred CCCce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEe
Q 044609 82 GTGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG 160 (232)
Q Consensus 82 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~ 160 (232)
..+.. ...+. ......+..+.+.|.+.+++.+++++++|++++.++ +. +.+.+.+|++++||+||+
T Consensus 82 ~~g~~~~~~~~---------~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~ad~vIg 148 (386)
T PRK07236 82 RDGRVVQRRPM---------PQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDG---DR-VTARFADGRRETADLLVG 148 (386)
T ss_pred CCCCEeeccCC---------CccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecC---Ce-EEEEECCCCEEEeCEEEE
Confidence 22322 11111 111346788889998888778899999999998764 44 778899999999999999
Q ss_pred cCCCchhhhhhh-cCCCCcccceeEEEEeeecCCCCC-----CccceeEEEecCeEEEEEEcCC
Q 044609 161 CDGVHSMVAQWL-GLSESINSGRSSVRGLAVFPHGHG-----LNQDIRQFVGVGFRAGFIPLND 218 (232)
Q Consensus 161 A~G~~S~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~ 218 (232)
|||.+|.+|+.+ +...+.+.+..+|++++....... ....+..+.+++..+.++|+++
T Consensus 149 ADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (386)
T PRK07236 149 ADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPG 212 (386)
T ss_pred CCCCCchHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCC
Confidence 999999999987 333556777778877644221111 1223455567776787888764
No 31
>PRK06185 hypothetical protein; Provisional
Probab=99.96 E-value=4.3e-27 Score=190.37 Aligned_cols=220 Identities=20% Similarity=0.261 Sum_probs=149.7
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhh-ccCceeeEEE
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSV-YAPAKRVFVT 79 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~ 79 (232)
|..+++||+||||||+|+++|+.|+++|++|+|+|+.+......++..+.+.+.+.|+++|+++.+.+. ..+...+.++
T Consensus 2 ~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~ 81 (407)
T PRK06185 2 AEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFE 81 (407)
T ss_pred CccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEE
Confidence 344679999999999999999999999999999999876544557889999999999999999987763 3345555554
Q ss_pred EcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCc-cEEEEeCCCc-EEE
Q 044609 80 NLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSS-AAIINLGDST-IIK 154 (232)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~-~~~v~~~~g~-~~~ 154 (232)
. ........++...... ......+.+..+.+.|.+.+ ++++++++++|+++..++ +.. .+.+...+|+ +++
T Consensus 82 ~-~~~~~~~~~~~~~~~~-~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~g~~~i~ 157 (407)
T PRK06185 82 I-GGRTVTLADFSRLPTP-YPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDGPGEIR 157 (407)
T ss_pred E-CCeEEEecchhhcCCC-CCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCCCcEEEE
Confidence 3 2222233344322211 22345688889999888765 378999999999998764 332 1234445664 799
Q ss_pred ccEEEecCCCchhhhhhhcCCCCccc-ceeEEEEeeecCCCCCC-ccceeEEEecCeEEEEEEcCCCeEEEEEEecCC
Q 044609 155 AKVLIGCDGVHSMVAQWLGLSESINS-GRSSVRGLAVFPHGHGL-NQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSP 230 (232)
Q Consensus 155 a~~vV~A~G~~S~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 230 (232)
||+||+|||.+|.+|+.++.+.+... ...... +..+..... ...+. ++.++..++++|.+ +. +.+.|..+
T Consensus 158 a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~g~~~llP~~-~~--~~i~~~~~ 229 (407)
T PRK06185 158 ADLVVGADGRHSRVRALAGLEVREFGAPMDVLW--FRLPREPDDPESLMG-RFGPGQGLIMIDRG-DY--WQCGYVIP 229 (407)
T ss_pred eCEEEECCCCchHHHHHcCCCccccCCCceeEE--EecCCCCCCCcccce-EecCCcEEEEEcCC-Ce--EEEEEEec
Confidence 99999999999999999987755432 222222 223322221 12344 44455558889997 54 34444433
No 32
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.96 E-value=1.9e-27 Score=189.01 Aligned_cols=210 Identities=27% Similarity=0.377 Sum_probs=140.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCce--eeEEEEcC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAK--RVFVTNLG 82 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~~~ 82 (232)
++||+||||||+|+++|..|+|+|++|+||||.+.+...+++..+.++++++|+++|+.+.+.....+.. ....+...
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI 80 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence 3799999999999999999999999999999999988888999999999999999999999888764433 22232220
Q ss_pred CCce-------eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC-CCc-
Q 044609 83 TGAT-------QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG-DST- 151 (232)
Q Consensus 83 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~-~g~- 151 (232)
.+.. ....+..... ......+.|..|.+.|.+.++ ++++++++++++++.+++ +.. +.+... +|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~-~~~-~~~~~~~~g~~ 156 (356)
T PF01494_consen 81 SDSRIWVENPQIREDMEIDTK--GPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDD-GVT-VVVRDGEDGEE 156 (356)
T ss_dssp TTSEEEEEEEEEEEECHSTSG--SSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETT-EEE-EEEEETCTCEE
T ss_pred CCccceeeecccceeeecccc--CCcchhhhHHHHHHhhhhhhhhhhhhheeeeeccccccccc-ccc-cccccccCCce
Confidence 1111 1111111122 445667899999999999865 789999999999987752 222 333333 343
Q ss_pred -EEEccEEEecCCCchhhhhhhcCCCCcccce--eEEEEeeecCCCC-CCccceeEEEecCeEEEEEEcCC
Q 044609 152 -IIKAKVLIGCDGVHSMVAQWLGLSESINSGR--SSVRGLAVFPHGH-GLNQDIRQFVGVGFRAGFIPLND 218 (232)
Q Consensus 152 -~~~a~~vV~A~G~~S~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~ 218 (232)
+++||+||+|||.+|.+|+.++...+..... ..+.......... ...+.+.....+...++++|+.+
T Consensus 157 ~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 227 (356)
T PF01494_consen 157 ETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLEN 227 (356)
T ss_dssp EEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETT
T ss_pred eEEEEeeeecccCcccchhhhccccccCccccccccccccccccccccccccccccccccccceeEeeccC
Confidence 7899999999999999999998664433221 2222222211111 11222333344555568899988
No 33
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.96 E-value=7.8e-27 Score=196.44 Aligned_cols=221 Identities=16% Similarity=0.169 Sum_probs=151.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRL-GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG 82 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~-g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (232)
.++||+||||||+||++|+.|++. |++|+||||.+.+...+++..++++++++|+++|+++.+.+...+.....++...
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 358999999999999999999995 9999999999888778899999999999999999999998888777766665432
Q ss_pred CCceeEE----ecc-CCCCCCCCceeeeehHHHHHHHhhhCC--C--CeEEeCceEEEEEecCCCCCccEEEEeC-----
Q 044609 83 TGATQEL----SYA-GKSGRIGSGLRSVHRQSLLEALADELP--D--DTIQFSSKIAAIDSQTLNGSSAAIINLG----- 148 (232)
Q Consensus 83 ~~~~~~~----~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~--~--~~i~~~~~v~~i~~~~~~g~~~~~v~~~----- 148 (232)
......+ .+. ...+........++|..+.+.|.+.+. + +.+.+++++++++.+++.+.. +.|++.
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~-V~v~l~~~~~~ 189 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYP-VTVTLRRTDGE 189 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCC-EEEEEEECCCC
Confidence 2111001 001 001100222356888899999988764 2 478899999999876431233 556553
Q ss_pred -CC--cEEEccEEEecCCCchhhhhhhcCCCCcccceeEEEEe-eecCCCCCCccce-eEEEecCeEEEEEEcCCCe-EE
Q 044609 149 -DS--TIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGL-AVFPHGHGLNQDI-RQFVGVGFRAGFIPLNDRD-VY 222 (232)
Q Consensus 149 -~g--~~~~a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~-~~ 222 (232)
+| ++++||+||+|||++|.+|+.++++..+......|... +......+..... .....++..++++|++++. ++
T Consensus 190 ~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~~r 269 (634)
T PRK08294 190 HEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGYLVR 269 (634)
T ss_pred CCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCeEEE
Confidence 35 48999999999999999999999877665444433221 1111111211111 1222344568899999885 44
Q ss_pred EEE
Q 044609 223 WFL 225 (232)
Q Consensus 223 ~~~ 225 (232)
+++
T Consensus 270 ~~~ 272 (634)
T PRK08294 270 LYV 272 (634)
T ss_pred EEE
Confidence 433
No 34
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.96 E-value=9.3e-27 Score=187.48 Aligned_cols=212 Identities=24% Similarity=0.256 Sum_probs=151.6
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC------cceeeeecccHHHHHHHcCChHHHHhh-ccCc
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA------TGAALTLSPNAWLALDALGVSHKLTSV-YAPA 73 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~------~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~ 73 (232)
|+...+||+||||||+|+++|+.|+++|++|+|+|+.+.... ..+...+.+++.++|+++|+++.+... ..+.
T Consensus 1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~ 80 (391)
T PRK08020 1 MTNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPY 80 (391)
T ss_pred CCcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCccc
Confidence 777889999999999999999999999999999999864321 235678999999999999999987653 3444
Q ss_pred eeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCC
Q 044609 74 KRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS 150 (232)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g 150 (232)
.....+....+.. .++...... +...+.++|..+.+.|.+.+ ++++++++++|+++..++ .. +.|.+.+|
T Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~~--~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~---~~-~~v~~~~g 153 (391)
T PRK08020 81 RRLETWEWETAHV-VFDAAELKL--PELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDD---DG-WELTLADG 153 (391)
T ss_pred ceEEEEeCCCCeE-EecccccCC--CccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC---Ce-EEEEECCC
Confidence 4444433323222 122111111 23356789999999998765 378999999999998764 33 77888888
Q ss_pred cEEEccEEEecCCCchhhhhhhcCCCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeE
Q 044609 151 TIIKAKVLIGCDGVHSMVAQWLGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDV 221 (232)
Q Consensus 151 ~~~~a~~vV~A~G~~S~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 221 (232)
.+++||+||+|||.+|.+|+.++..... .+.+.++.+.+..+.. +.+..+..|+..++ .+++|+.++..
T Consensus 154 ~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~g~-~~~~p~~~~~~ 223 (391)
T PRK08020 154 EEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENP-PGDSTWQQFTPSGP-RAFLPLFDNWA 223 (391)
T ss_pred CEEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCC-CCCEEEEEEcCCCC-EEEeECCCCcE
Confidence 8999999999999999999999866433 2334455555544332 22344556666665 56789987754
No 35
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.96 E-value=1.4e-26 Score=186.82 Aligned_cols=216 Identities=22% Similarity=0.314 Sum_probs=151.4
Q ss_pred cccccEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCCC-----cCcceeeeecccHHHHHHHcCChHHHHhhccCce
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRL---GIKALVLEKSDGL-----RATGAALTLSPNAWLALDALGVSHKLTSVYAPAK 74 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~---g~~v~viE~~~~~-----~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 74 (232)
|+.+||+||||||+|+++|+.|+++ |++|+|+||.... ...++++.+.+++.++|+++|+++.+.+...+..
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~ 80 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIT 80 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCcc
Confidence 3568999999999999999999998 9999999995322 2235788999999999999999999888777666
Q ss_pred eeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCCc
Q 044609 75 RVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDST 151 (232)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~ 151 (232)
...+..........+....... +...+.+.|..+.+.|.+.+ .+++++++++|+++..++ +. +.|++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~---~~-~~v~~~~g~ 154 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYGV--PALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQ---GS-VRVTLDDGE 154 (395)
T ss_pred EEEEecCCCCceEEeehhhcCC--CccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC---Ce-EEEEECCCC
Confidence 6554432111011111111111 22245688888888887755 368999999999998653 34 778888888
Q ss_pred EEEccEEEecCCCchhhhhhhcCCCCcc-cceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEE
Q 044609 152 IIKAKVLIGCDGVHSMVAQWLGLSESIN-SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN 226 (232)
Q Consensus 152 ~~~a~~vV~A~G~~S~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 226 (232)
++.+|+||+|||.+|.+|+.++...+.. .++..+...+..... +....+..+...+. ++++|.++++..+++.
T Consensus 155 ~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~-~~~~p~~~g~~~~~~~ 228 (395)
T PRK05732 155 TLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEA-HQGRAFERFTEHGP-LALLPMSDGRCSLVWC 228 (395)
T ss_pred EEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCC-CCCEEEEeecCCCC-EEEeECCCCCeEEEEE
Confidence 8999999999999999999998764433 344555544433322 11223444444454 7789999988655444
No 36
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.96 E-value=5.3e-26 Score=189.32 Aligned_cols=223 Identities=23% Similarity=0.331 Sum_probs=155.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcc---eeeeecccHHHHHHHcCC--hHHHHhhccCce-ee
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATG---AALTLSPNAWLALDALGV--SHKLTSVYAPAK-RV 76 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~---~~~~~~~~~~~~l~~~g~--~~~~~~~~~~~~-~~ 76 (232)
+..+|+||||||+|+++|+.|+++|++|+|+||.+.. ...+ +++.++++++++|+++|+ .+.+.+...... .+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 3489999999999999999999999999999998632 2222 568999999999999985 455555444321 12
Q ss_pred E-EEEcCCCce-eEEeccC-CCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEE
Q 044609 77 F-VTNLGTGAT-QELSYAG-KSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTII 153 (232)
Q Consensus 77 ~-~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~ 153 (232)
. +.....+.. ..++... ......+....++|..|.+.|.+.+....++++++|++++.++ +. +.+.+.+|+++
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~---d~-VtV~~~dG~ti 235 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSG---DK-VTVVLENGQRY 235 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeC---CE-EEEEECCCCEE
Confidence 1 112122222 2222111 0000022345799999999999887544578899999998763 44 77889999899
Q ss_pred EccEEEecCCCchhhhhhh-cCCCCcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEecCC
Q 044609 154 KAKVLIGCDGVHSMVAQWL-GLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSP 230 (232)
Q Consensus 154 ~a~~vV~A~G~~S~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 230 (232)
.+|+||+|||.+|.+|+.+ +...+.+.+..+|++.+...........+..+.+.+.++.+.|.+++..+|+.++..+
T Consensus 236 ~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p 313 (668)
T PLN02927 236 EGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEP 313 (668)
T ss_pred EcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECC
Confidence 9999999999999999987 6556677888888887655322111223455667777777788888877777655443
No 37
>PRK06996 hypothetical protein; Provisional
Probab=99.96 E-value=1.9e-26 Score=185.77 Aligned_cols=209 Identities=20% Similarity=0.222 Sum_probs=149.8
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCC----CcEEEEecCCCCc--CcceeeeecccHHHHHHHcCChHHHHhhccCce
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLG----IKALVLEKSDGLR--ATGAALTLSPNAWLALDALGVSHKLTSVYAPAK 74 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g----~~v~viE~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 74 (232)
|..+++||+||||||+|+++|+.|+++| ++|+|+|+.+.+. ...+++.+.+.+.++|+++|+++. ...+..
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~---~~~~~~ 83 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA---DATPIE 83 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh---cCCccc
Confidence 6667899999999999999999999987 4799999986442 345799999999999999999885 344455
Q ss_pred eeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCC--
Q 044609 75 RVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDS-- 150 (232)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g-- 150 (232)
...++.........+....... +...+.++|..+.+.|.+.+. ++++++++++++++.+. +. +.+++.++
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~--~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~---~~-v~v~~~~~~g 157 (398)
T PRK06996 84 HIHVSQRGHFGRTLIDRDDHDV--PALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA---DG-VTLALGTPQG 157 (398)
T ss_pred EEEEecCCCCceEEecccccCC--CcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC---Ce-EEEEECCCCc
Confidence 5544432111112222222211 334668999999999998875 68899999999997653 44 77777754
Q ss_pred -cEEEccEEEecCCC-chhhhhhhcCCC-CcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCe
Q 044609 151 -TIIKAKVLIGCDGV-HSMVAQWLGLSE-SINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRD 220 (232)
Q Consensus 151 -~~~~a~~vV~A~G~-~S~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 220 (232)
++++||+||+|||. +|.+|+.++... ...+++.++++.+....+.+ ...+..|...|. ++++|++++.
T Consensus 158 ~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~G~-~~~lp~~~~~ 228 (398)
T PRK06996 158 ARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRP-GWAWERFTHEGP-LALLPLGGPR 228 (398)
T ss_pred ceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCC-CEEEEEecCCCC-eEEeECCCCC
Confidence 58999999999997 577888887653 34567778877766543322 234555665565 7788998764
No 38
>PLN02985 squalene monooxygenase
Probab=99.96 E-value=2.7e-26 Score=188.87 Aligned_cols=218 Identities=17% Similarity=0.176 Sum_probs=149.0
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhh-ccCceeeEEEEc
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSV-YAPAKRVFVTNL 81 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~~ 81 (232)
...+||+|||||++|+++|+.|+++|++|+|+||.......+.++.+.+++.+.|+++|+++.+... ..+..++..+.
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~- 119 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK- 119 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE-
Confidence 3458999999999999999999999999999999876555667889999999999999999988764 33455555543
Q ss_pred CCCceeEEeccCCCC--CCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCc-cEEEEeCCCc--EE
Q 044609 82 GTGATQELSYAGKSG--RIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSS-AAIINLGDST--II 153 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~-~~~v~~~~g~--~~ 153 (232)
++.....+++.... .+......++|..|.+.|.+.+. ++++..+ +++++..++ +.. .+.+...+|+ ++
T Consensus 120 -~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~--~~v~gV~~~~~dG~~~~~ 195 (514)
T PLN02985 120 -DGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEK--GVIKGVTYKNSAGEETTA 195 (514)
T ss_pred -CCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcC--CEEEEEEEEcCCCCEEEE
Confidence 34333344442111 01233467899999999998763 6777765 577776553 332 1333345665 46
Q ss_pred EccEEEecCCCchhhhhhhcCCCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEec
Q 044609 154 KAKVLIGCDGVHSMVAQWLGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRY 228 (232)
Q Consensus 154 ~a~~vV~A~G~~S~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 228 (232)
.||+||+|||.+|.+|+.++.+.+. ......+ .......+.......+++++.+++++|++++..++.+...
T Consensus 196 ~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~ 268 (514)
T PLN02985 196 LAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGY---ISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVL 268 (514)
T ss_pred ECCEEEECCCCchHHHHHhccCCCcceeEeEEE---EEccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEe
Confidence 7999999999999999999765432 2222222 2211111222333456677777889999998876666543
No 39
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.95 E-value=4.4e-26 Score=183.43 Aligned_cols=213 Identities=21% Similarity=0.284 Sum_probs=150.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC-----cceeeeecccHHHHHHHcCChHHHHh-hccCceeeE
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA-----TGAALTLSPNAWLALDALGVSHKLTS-VYAPAKRVF 77 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~-----~~~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~ 77 (232)
+++||+||||||+|+++|+.|++.|++|+|+||.+.+.. ..+.+.+.++++++|+++|+++.+.. ...+.....
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 468999999999999999999999999999999987643 23458899999999999999988754 334555555
Q ss_pred EEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--C-CeEEeCceEEEEEecCCCCCccEEEEeCCCcEEE
Q 044609 78 VTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--D-DTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIK 154 (232)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~-~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~ 154 (232)
+.....+ .+.+.......+...+.+++..+.+.|.+.+. + ++++ +++|++++.++ +. +.|++.+|.+++
T Consensus 84 ~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~---~~-~~v~~~~g~~~~ 155 (388)
T PRK07608 84 VFGDAHA---RLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDP---DA-ATLTLADGQVLR 155 (388)
T ss_pred EEECCCc---eeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecC---Ce-EEEEECCCCEEE
Confidence 5432222 22222111111334567899999999988764 3 7777 99999998664 34 778888888899
Q ss_pred ccEEEecCCCchhhhhhhcCCCCccc-ceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEE
Q 044609 155 AKVLIGCDGVHSMVAQWLGLSESINS-GRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN 226 (232)
Q Consensus 155 a~~vV~A~G~~S~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 226 (232)
||+||+|||.+|.+|+.++...+... ....+...+..+.. .......++.++..++++|++++.+++.+.
T Consensus 156 a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 226 (388)
T PRK07608 156 ADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERP--HRGTAYQWFRDDGILALLPLPDGHVSMVWS 226 (388)
T ss_pred eeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCC--CCCEEEEEecCCCCEEEeECCCCCeEEEEE
Confidence 99999999999999999987644322 23334333333322 122334455666668899999998655443
No 40
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.95 E-value=4.9e-26 Score=183.13 Aligned_cols=164 Identities=20% Similarity=0.276 Sum_probs=124.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc--CcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR--ATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG 82 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (232)
++||+||||||+|+++|+.|+++|++|+|+||.+.+. ...++..+.+++.++|+++|+++.+.....+.....+++
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~-- 79 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRF-- 79 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEE--
Confidence 5799999999999999999999999999999998642 233455689999999999999999988777777776654
Q ss_pred CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe-CCCc--EEEccE
Q 044609 83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL-GDST--IIKAKV 157 (232)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~-~~g~--~~~a~~ 157 (232)
.+....+++....+ ......+.+..+.+.|.+.+. ++++++++++++++..+ ++. +.|++ .+|+ +++||+
T Consensus 80 ~g~~~~~~~~~~~~--~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~--~~~-~~V~~~~~G~~~~i~ad~ 154 (392)
T PRK08243 80 DGRRHRIDLTELTG--GRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFD--SDR-PYVTYEKDGEEHRLDCDF 154 (392)
T ss_pred CCEEEEeccccccC--CceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecC--CCc-eEEEEEcCCeEEEEEeCE
Confidence 33344455543222 222334567788877776543 78999999999997622 233 45555 4664 789999
Q ss_pred EEecCCCchhhhhhhcCC
Q 044609 158 LIGCDGVHSMVAQWLGLS 175 (232)
Q Consensus 158 vV~A~G~~S~~r~~~~~~ 175 (232)
||+|||.+|.+|+.++..
T Consensus 155 vVgADG~~S~vR~~~~~~ 172 (392)
T PRK08243 155 IAGCDGFHGVSRASIPAG 172 (392)
T ss_pred EEECCCCCCchhhhcCcc
Confidence 999999999999999754
No 41
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.95 E-value=1.2e-25 Score=187.82 Aligned_cols=215 Identities=16% Similarity=0.205 Sum_probs=145.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT 83 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (232)
+.+||+||||||+|+++|+.|+++|++|+||||.+.+...+++..++++++++|+++|+.+.+.+...+......++. .
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~-~ 100 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLR-D 100 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeC-C
Confidence 458999999999999999999999999999999998877888999999999999999999998877665544434332 2
Q ss_pred CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCc-EEEccEEE
Q 044609 84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDST-IIKAKVLI 159 (232)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~-~~~a~~vV 159 (232)
+....+++....+...+....+.+..+.+.|.+.+. +++++++++|++++.++ +...+.+...++. +++||+||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v~v~~~~~~g~~~i~ad~vV 178 (547)
T PRK08132 101 EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGVTLTVETPDGPYTLEADWVI 178 (547)
T ss_pred CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEEEEEEECCCCcEEEEeCEEE
Confidence 222333332211110222345788888888887653 68999999999998764 2211333334554 79999999
Q ss_pred ecCCCchhhhhhhcCCCCcccc-eeEEEEeeecCCCCCCccceeEEE---ecCeEEEEEEcCCCeEE
Q 044609 160 GCDGVHSMVAQWLGLSESINSG-RSSVRGLAVFPHGHGLNQDIRQFV---GVGFRAGFIPLNDRDVY 222 (232)
Q Consensus 160 ~A~G~~S~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~ 222 (232)
+|||.+|.+|+.++.+..+... ...+...+....+.+ ...+..+. .++..+++.|.+++..+
T Consensus 179 gADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (547)
T PRK08132 179 ACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFP-TERWFWFDPPFHPGQSVLLHRQPDNVWR 244 (547)
T ss_pred ECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCC-CeeeEEEeccCCCCcEEEEEeCCCCeEE
Confidence 9999999999999887655432 222222222222211 11222221 23455666677776533
No 42
>PRK06126 hypothetical protein; Provisional
Probab=99.95 E-value=5.8e-26 Score=189.80 Aligned_cols=220 Identities=22% Similarity=0.327 Sum_probs=148.9
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCce---eeE
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAK---RVF 77 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~---~~~ 77 (232)
|+++++||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..+.++++++|+++|+.+.+.+.+.+.. ...
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~ 82 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIA 82 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCce
Confidence 56677999999999999999999999999999999998887788899999999999999999999887765432 111
Q ss_pred EEEcCCCce-eEEeccCCCC------------CCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCc
Q 044609 78 VTNLGTGAT-QELSYAGKSG------------RIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSS 141 (232)
Q Consensus 78 ~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~ 141 (232)
+.....+.. ..+.+..... ..+.....+.+..+.+.|.+.+ ++++++++++|+++..++ +.
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~- 159 (545)
T PRK06126 83 YFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DG- 159 (545)
T ss_pred EEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECC--Ce-
Confidence 222122322 3333321100 0012245678888999988765 368999999999998764 22
Q ss_pred cEEEEe---CCCc--EEEccEEEecCCCchhhhhhhcCCCCcccc-eeEEEEeeecCC---CCCCccceeEE-EecCeEE
Q 044609 142 AAIINL---GDST--IIKAKVLIGCDGVHSMVAQWLGLSESINSG-RSSVRGLAVFPH---GHGLNQDIRQF-VGVGFRA 211 (232)
Q Consensus 142 ~~~v~~---~~g~--~~~a~~vV~A~G~~S~~r~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~ 211 (232)
+.+.+ .+|+ +++||+||+|||++|.+|+.+++...+... ...+...+..+. ..+....+.+| ++++.+.
T Consensus 160 -v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~ 238 (545)
T PRK06126 160 -VTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRG 238 (545)
T ss_pred -EEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccE
Confidence 33433 3453 789999999999999999999877554432 222233333322 11222334444 3444555
Q ss_pred EEEEcCCCeEEEE
Q 044609 212 GFIPLNDRDVYWF 224 (232)
Q Consensus 212 ~~~p~~~~~~~~~ 224 (232)
.++|.+++..+++
T Consensus 239 ~~~~~~~~~~~~~ 251 (545)
T PRK06126 239 VLVAIDGRDEWLF 251 (545)
T ss_pred EEEEECCCCeEEE
Confidence 6667766554333
No 43
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.95 E-value=3e-25 Score=178.15 Aligned_cols=213 Identities=15% Similarity=0.193 Sum_probs=140.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc--CcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR--ATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG 82 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (232)
.+||+||||||+|+++|+.|+++|++|+|+||.+... ...++..+.++++++|+++|+++.+...+.+.....+++
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~-- 79 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAF-- 79 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEee--
Confidence 4799999999999999999999999999999998632 223444588999999999999999988777766666654
Q ss_pred CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC-CCc--EEEccE
Q 044609 83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG-DST--IIKAKV 157 (232)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~-~g~--~~~a~~ 157 (232)
.+....+++..... ........+..+.+.|.+.+. ++.++++++++.+...+ ++. ..|++. +|+ +++||+
T Consensus 80 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~--~~~-~~V~~~~~g~~~~i~adl 154 (390)
T TIGR02360 80 DGQRFRIDLKALTG--GKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLA--GDR-PYVTFERDGERHRLDCDF 154 (390)
T ss_pred CCEEEEEeccccCC--CceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecC--CCc-cEEEEEECCeEEEEEeCE
Confidence 23334444443222 111223346677777777653 67899998888876533 233 455554 664 789999
Q ss_pred EEecCCCchhhhhhhcCCCC-cccce--eEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCe-EEEEEEe
Q 044609 158 LIGCDGVHSMVAQWLGLSES-INSGR--SSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRD-VYWFLNR 227 (232)
Q Consensus 158 vV~A~G~~S~~r~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~ 227 (232)
||+|||.+|.+|+.++...+ .+.+. ..|.+.+.... +.... ..+...+..+.++|+.++. .+|++..
T Consensus 155 vIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (390)
T TIGR02360 155 IAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETP--PVSHE-LIYSNHERGFALCSMRSATRSRYYVQV 225 (390)
T ss_pred EEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCC--CCCCc-eEEEeCCCceEEEeccCCCcceEEEEc
Confidence 99999999999999865432 12222 23444433221 11122 2344555557777876433 2344433
No 44
>PRK06834 hypothetical protein; Provisional
Probab=99.95 E-value=3.9e-25 Score=181.50 Aligned_cols=202 Identities=19% Similarity=0.189 Sum_probs=142.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc-CcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR-ATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT 83 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (232)
++||+||||||+|+++|+.|+++|++|+||||.+.+. ...++..++++++++|+++|+++.+.+.........+..
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~--- 79 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAA--- 79 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeee---
Confidence 4899999999999999999999999999999988654 345788899999999999999999876554432211100
Q ss_pred CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609 84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC 161 (232)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A 161 (232)
..+++...... .+....+.+..+.+.|.+.++ +++++++++|++++.++ +. +.+++.+|++++||+||+|
T Consensus 80 ---~~~~~~~~~~~-~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~---~~-v~v~~~~g~~i~a~~vVgA 151 (488)
T PRK06834 80 ---TRLDISDFPTR-HNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD---TG-VDVELSDGRTLRAQYLVGC 151 (488)
T ss_pred ---EecccccCCCC-CCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC---Ce-EEEEECCCCEEEeCEEEEe
Confidence 11222111110 122346778889998888765 78999999999998874 34 6777788888999999999
Q ss_pred CCCchhhhhhhcCCCCcccc-eeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcC-CCeE
Q 044609 162 DGVHSMVAQWLGLSESINSG-RSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLN-DRDV 221 (232)
Q Consensus 162 ~G~~S~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~ 221 (232)
||.+|.+|+.++++.+++.. +..+.+.+..+... .+..+..+...+.+.|.+ ++..
T Consensus 152 DG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~ 209 (488)
T PRK06834 152 DGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEP----EWGVHRDALGIHAFGRLEDEGPV 209 (488)
T ss_pred cCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCCC----CcceeeCCCceEEEeccCCCCeE
Confidence 99999999999988776543 33444444333221 121223333346677776 5543
No 45
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.93 E-value=8.7e-25 Score=166.11 Aligned_cols=220 Identities=20% Similarity=0.206 Sum_probs=164.4
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhcc-CceeeEEEEc
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYA-PAKRVFVTNL 81 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~~~~~~~~ 81 (232)
+..+||||||||.+|.++|+.|+|.|.+|.||||+-....+--|..++|.+...|+++|+.+.++.... ...+..++.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk- 121 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK- 121 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEe-
Confidence 345899999999999999999999999999999998776667789999999999999999999887554 344555543
Q ss_pred CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeC--CCc--EEE
Q 044609 82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLG--DST--IIK 154 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~--~g~--~~~ 154 (232)
+++...++|+-......+.+..++..+|++.|++.+ +++++..+ .|.++.+++ +.. ..|+.. +|+ +..
T Consensus 122 -~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~--gvv-kGV~yk~k~gee~~~~ 196 (509)
T KOG1298|consen 122 -DGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEE--GVV-KGVTYKNKEGEEVEAF 196 (509)
T ss_pred -CCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhcc--CeE-EeEEEecCCCceEEEe
Confidence 455555666533222255677899999999999876 47777766 566776654 443 555554 444 667
Q ss_pred ccEEEecCCCchhhhhhhcCCCCcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEecC
Q 044609 155 AKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYS 229 (232)
Q Consensus 155 a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 229 (232)
|.+.|+|||.+|++|+.+-.+... ..-..+.|.+......+........+.+...+.++|++...+++.+-+..
T Consensus 197 ApLTvVCDGcfSnlRrsL~~~~v~-~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g 270 (509)
T KOG1298|consen 197 APLTVVCDGCFSNLRRSLCDPKVE-EVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPG 270 (509)
T ss_pred cceEEEecchhHHHHHHhcCCccc-ccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCc
Confidence 899999999999999998543221 13334666666555555556677778888889999999999888876654
No 46
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.93 E-value=1.2e-23 Score=163.25 Aligned_cols=206 Identities=21% Similarity=0.267 Sum_probs=135.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
|||+||||||+|+++|+.|++.|++|+|+||.+.++...++..+.+..++.+...+.. .........+.. ..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~-~~~~ 74 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL-----IVNLVRGARFFS-PNGD 74 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh-----hhhheeeEEEEc-CCCc
Confidence 6999999999999999999999999999999987766667777888777776655321 111112222222 2222
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCC-CcEEEccEEEecC
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGD-STIIKAKVLIGCD 162 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-g~~~~a~~vV~A~ 162 (232)
....... ......++|..+.+.|.+.+. +++++++++|+++..++ +. +.+...+ +.+++||+||+|+
T Consensus 75 ~~~~~~~------~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~--~~~~~~~~~~~~~a~~vv~a~ 144 (295)
T TIGR02032 75 SVEIPIE------TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD--DR--VVVIVRGGEGTVTAKIVIGAD 144 (295)
T ss_pred EEEeccC------CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CE--EEEEEcCccEEEEeCEEEECC
Confidence 2111111 233567899999999998775 78999999999998764 23 4454443 4589999999999
Q ss_pred CCchhhhhhhcCCCCcccceeEEEEeeecCCCCCCccceeEEEe----cCeEEEEEEcCCCeEEEEEEe
Q 044609 163 GVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVG----VGFRAGFIPLNDRDVYWFLNR 227 (232)
Q Consensus 163 G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~ 227 (232)
|.+|.+++.++...........+.+....+...........+.+ ++.+.+++|+++++..+.++.
T Consensus 145 G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~ 213 (295)
T TIGR02032 145 GSRSIVAKKLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGS 213 (295)
T ss_pred CcchHHHHhcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeee
Confidence 99999999887654222222233334443321111122333433 346788999999876565543
No 47
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.93 E-value=3.3e-23 Score=166.63 Aligned_cols=208 Identities=24% Similarity=0.248 Sum_probs=135.4
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCccee-eeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAA-LTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL 81 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 81 (232)
+++|||+||||||||++||+.|++.|++|+|+||...++...++ ..+.+..++.+... .... .........++..
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~---~~~~-i~~~v~~~~~~~~ 76 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPD---FDEE-IERKVTGARIYFP 76 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCC---cchh-hheeeeeeEEEec
Confidence 46799999999999999999999999999999999988765444 45555444333222 1111 2222333333332
Q ss_pred CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEE
Q 044609 82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLI 159 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV 159 (232)
+....+..+ ....+.++|..|.++|.+.+. |++++.++++.++..++ +.. +.....++.+++|++||
T Consensus 77 --~~~~~~~~~------~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~--~~~-~~~~~~~~~e~~a~~vI 145 (396)
T COG0644 77 --GEKVAIEVP------VGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIRED--DGV-VVGVRAGDDEVRAKVVI 145 (396)
T ss_pred --CCceEEecC------CCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeC--CcE-EEEEEcCCEEEEcCEEE
Confidence 222222221 134778999999999998775 89999999999999875 332 44444444789999999
Q ss_pred ecCCCchhhhhhhcCCCCcccce--eEEEEeeecCCCCCCccceeEE----EecCeEEEEEEcCCCeEEEEEEec
Q 044609 160 GCDGVHSMVAQWLGLSESINSGR--SSVRGLAVFPHGHGLNQDIRQF----VGVGFRAGFIPLNDRDVYWFLNRY 228 (232)
Q Consensus 160 ~A~G~~S~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~~~~~~~~ 228 (232)
+|||.+|.+++.++.. ...+.. ..+.-....+ .........+ ...+.+.|++|..++.....+...
T Consensus 146 ~AdG~~s~l~~~lg~~-~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~ 217 (396)
T COG0644 146 DADGVNSALARKLGLK-DRKPEDYAIGVKEVIEVP--DDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVL 217 (396)
T ss_pred ECCCcchHHHHHhCCC-CCChhheeEEeEEEEecC--CCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEe
Confidence 9999999999999877 211111 1122122233 1111112221 234667999999999877776643
No 48
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.91 E-value=6.8e-22 Score=160.56 Aligned_cols=210 Identities=17% Similarity=0.201 Sum_probs=127.5
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN 80 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 80 (232)
|+.+++||+||||||+|+++|+.|+++|++|+|+||.... ...++..+. ...++++|+.+.+... .+....+..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~-~k~cgg~i~---~~~l~~lgl~~~~~~~--~i~~~~~~~ 108 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDN-AKPCGGAIP---LCMVGEFDLPLDIIDR--KVTKMKMIS 108 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-CCCcccccc---HhHHhhhcCcHHHHHH--HhhhheEec
Confidence 4456799999999999999999999999999999998643 223444443 3667788887665432 223333332
Q ss_pred cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCC-------C-
Q 044609 81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGD-------S- 150 (232)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-------g- 150 (232)
. .+. .+.+...... ......++|..|.+.|.+.+. |++++.+ +++++....+.+.. +.|++.+ |
T Consensus 109 p-~~~--~v~~~~~~~~-~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~-~~v~~~~~~~~~~~g~ 182 (450)
T PLN00093 109 P-SNV--AVDIGKTLKP-HEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGP-YVIHYTSYDSGSGAGT 182 (450)
T ss_pred C-Cce--EEEecccCCC-CCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCc-EEEEEEeccccccCCC
Confidence 1 111 2222211110 122335899999999998764 7888765 57777643211223 4454422 3
Q ss_pred -cEEEccEEEecCCCchhhhhhhcCCCCcccceeEEEEeeecCCC-CCCccce-eEEEe----cCeEEEEEEcCCCeEEE
Q 044609 151 -TIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHG-HGLNQDI-RQFVG----VGFRAGFIPLNDRDVYW 223 (232)
Q Consensus 151 -~~~~a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~----~~~~~~~~p~~~~~~~~ 223 (232)
.+++||+||+|||.+|.+|+.++.... ....++...+..+.. ......+ ..+++ ++.+.|++|.++ .+..
T Consensus 183 ~~~v~a~~VIgADG~~S~vrr~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~-~~~V 259 (450)
T PLN00093 183 PKTLEVDAVIGADGANSRVAKDIDAGDY--DYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCD-HVAV 259 (450)
T ss_pred ccEEEeCEEEEcCCcchHHHHHhCCCCc--ceeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCC-cEEE
Confidence 479999999999999999999986531 111222222223321 1122222 33433 355789999995 4444
Q ss_pred EE
Q 044609 224 FL 225 (232)
Q Consensus 224 ~~ 225 (232)
.+
T Consensus 260 G~ 261 (450)
T PLN00093 260 GT 261 (450)
T ss_pred EE
Confidence 43
No 49
>PRK11445 putative oxidoreductase; Provisional
Probab=99.91 E-value=2.8e-22 Score=158.94 Aligned_cols=156 Identities=23% Similarity=0.256 Sum_probs=110.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc----CcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR----ATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL 81 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~----~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 81 (232)
+||+||||||+|+++|..|+++ ++|+++||.+... ...++..+++++.+.|+++|+.........+ .....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~-~~~~~--- 76 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP-QIFAV--- 76 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc-cccee---
Confidence 6999999999999999999999 9999999987643 2236788999999999999986321110000 00000
Q ss_pred CCCceeEEeccC-CCCCCCCceeeeehHHHHHHHhhhCC-CCeEEeCceEEEEEecCCCCCccEEEEe-CCCc--EEEcc
Q 044609 82 GTGATQELSYAG-KSGRIGSGLRSVHRQSLLEALADELP-DDTIQFSSKIAAIDSQTLNGSSAAIINL-GDST--IIKAK 156 (232)
Q Consensus 82 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~i~~~~~~g~~~~~v~~-~~g~--~~~a~ 156 (232)
..+++.. ....+......++|..|.+.|.+..+ ++++++++.+++++.++ +. +.|.+ .+|+ +++||
T Consensus 77 -----~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~---~~-~~v~~~~~g~~~~i~a~ 147 (351)
T PRK11445 77 -----KTIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWRED---DG-YHVIFRADGWEQHITAR 147 (351)
T ss_pred -----eEecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcC---CE-EEEEEecCCcEEEEEeC
Confidence 1111111 00000222346899999999988654 78999999999998764 33 55654 5664 68999
Q ss_pred EEEecCCCchhhhhhhcCC
Q 044609 157 VLIGCDGVHSMVAQWLGLS 175 (232)
Q Consensus 157 ~vV~A~G~~S~~r~~~~~~ 175 (232)
+||+|||.+|.+|+.++..
T Consensus 148 ~vV~AdG~~S~vr~~l~~~ 166 (351)
T PRK11445 148 YLVGADGANSMVRRHLYPD 166 (351)
T ss_pred EEEECCCCCcHHhHHhcCC
Confidence 9999999999999988654
No 50
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.90 E-value=2.4e-21 Score=155.72 Aligned_cols=196 Identities=17% Similarity=0.311 Sum_probs=123.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKS-DGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (232)
|||+||||||+|+++|+.|+++|++|+|+|+. +.+ ..++..+.+ +.++++++.+.+... .+....++.. .+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~--~~cg~~i~~---~~l~~l~i~~~~~~~--~~~~~~~~~~-~~ 72 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNI--KPCGGAIPP---CLIEEFDIPDSLIDR--RVTQMRMISP-SR 72 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCc--CcCcCCcCH---hhhhhcCCchHHHhh--hcceeEEEcC-CC
Confidence 79999999999999999999999999999998 332 234444444 567788887665432 3444554432 22
Q ss_pred ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCC------C--cEEE
Q 044609 85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGD------S--TIIK 154 (232)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~------g--~~~~ 154 (232)
.......+.. ......++|..|.+.|.+.+. +++++.+ +|+++..++ .. +.+++.+ + .++.
T Consensus 73 ~~~~~~~~~~----~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~---~~-~~v~~~~~~~~~~~~~~~i~ 143 (388)
T TIGR02023 73 VPIKVTIPSE----DGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDR---DG-VTLTYRTPKKGAGGEKGSVE 143 (388)
T ss_pred ceeeeccCCC----CCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcC---Ce-EEEEEEeccccCCCcceEEE
Confidence 2222222111 111235899999999998764 7888655 688987664 33 5555442 2 3799
Q ss_pred ccEEEecCCCchhhhhhhcCCCCcccceeEEEEeeecCCC-CCCcccee-EEE----ecCeEEEEEEcCCC
Q 044609 155 AKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHG-HGLNQDIR-QFV----GVGFRAGFIPLNDR 219 (232)
Q Consensus 155 a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~----~~~~~~~~~p~~~~ 219 (232)
||+||+|||.+|.+|+.++.+.+.. ...++...+..+.. ....++.. .++ .++.+.|++|.++.
T Consensus 144 a~~VI~AdG~~S~v~r~lg~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~ 213 (388)
T TIGR02023 144 ADVVIGADGANSPVAKELGLPKNLP-RVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDH 213 (388)
T ss_pred eCEEEECCCCCcHHHHHcCCCCCCc-EEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCe
Confidence 9999999999999999998763221 11233333332221 11223322 232 23557899999854
No 51
>PRK10015 oxidoreductase; Provisional
Probab=99.89 E-value=3.9e-21 Score=155.79 Aligned_cols=169 Identities=22% Similarity=0.296 Sum_probs=106.4
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcc-eeeeecccHHHHHHHcCChHHHHhhccCceeeEEE
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATG-AALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVT 79 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 79 (232)
|++.+|||+||||||+|+++|+.|+++|++|+||||.+.++... ++..+.....+.+. .++... ...........++
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~-~~~~~~-~~i~~~~~~~~~~ 78 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAII-PGFAAS-APVERKVTREKIS 78 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHc-cccccc-CCccccccceeEE
Confidence 66667999999999999999999999999999999998775431 22222222222210 011100 0000111111122
Q ss_pred EcCCCceeEEeccCCC-CCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEcc
Q 044609 80 NLGTGATQELSYAGKS-GRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAK 156 (232)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~ 156 (232)
....+....+++.... +......+.+.|..|.++|.+.+. +++++.+++|+++..++ +.. ..+. .++.++.||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v-~~v~-~~~~~i~A~ 154 (429)
T PRK10015 79 FLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG--NKV-TGVQ-AGDDILEAN 154 (429)
T ss_pred EEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEE-EEEE-eCCeEEECC
Confidence 2222222223332111 100223568899999999988764 78999999999988654 332 3344 345579999
Q ss_pred EEEecCCCchhhhhhhcCC
Q 044609 157 VLIGCDGVHSMVAQWLGLS 175 (232)
Q Consensus 157 ~vV~A~G~~S~~r~~~~~~ 175 (232)
+||+|+|.+|.+++.++..
T Consensus 155 ~VI~AdG~~s~v~~~lg~~ 173 (429)
T PRK10015 155 VVILADGVNSMLGRSLGMV 173 (429)
T ss_pred EEEEccCcchhhhcccCCC
Confidence 9999999999999988764
No 52
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.88 E-value=1.5e-20 Score=152.48 Aligned_cols=175 Identities=22% Similarity=0.323 Sum_probs=110.7
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcc-eeeeecccHHHHHHHcCChHHHHhhccCce----e
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATG-AALTLSPNAWLALDALGVSHKLTSVYAPAK----R 75 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~----~ 75 (232)
|+..+|||+||||||+|+++|+.|+++|++|+||||.+.++... .+-.+.... ++++ ...+... .+.. .
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~---~e~l--~~~~~~~-~~~~~~~~~ 74 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHS---LEHI--IPGFADS-APVERLITH 74 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhh---HHHH--hhhhhhc-Ccccceeee
Confidence 66667999999999999999999999999999999998775321 122222222 2222 1111111 1111 0
Q ss_pred eEEEEcCCCceeEEeccCC-CCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcE
Q 044609 76 VFVTNLGTGATQELSYAGK-SGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTI 152 (232)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~ 152 (232)
....+........+++... ........+.+.|..|.++|.+.+. |++++.+++|+++..++ +. +.+...++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~--v~~v~~~g~~ 150 (428)
T PRK10157 75 EKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD--GK--VVGVEADGDV 150 (428)
T ss_pred eeEEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC--CE--EEEEEcCCcE
Confidence 0111111111222222211 1111234567899999999998774 88999999999998754 33 3333456778
Q ss_pred EEccEEEecCCCchhhhhhhcCCCCcccceeEE
Q 044609 153 IKAKVLIGCDGVHSMVAQWLGLSESINSGRSSV 185 (232)
Q Consensus 153 ~~a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~ 185 (232)
+.|++||+|||.+|.+++.++...+....+.++
T Consensus 151 i~A~~VI~A~G~~s~l~~~lgl~~~~~~~~~av 183 (428)
T PRK10157 151 IEAKTVILADGVNSILAEKLGMAKRVKPTDVAV 183 (428)
T ss_pred EECCEEEEEeCCCHHHHHHcCCCCCCCCcEEEE
Confidence 999999999999999999988764433444333
No 53
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.88 E-value=3.1e-20 Score=149.41 Aligned_cols=205 Identities=16% Similarity=0.213 Sum_probs=122.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
+||+||||||+|+++|+.|+++|++|+|+||..... ..++..+. .+.++++|+.+.+... ......+... .+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~-~~cg~~i~---~~~l~~~g~~~~~~~~--~i~~~~~~~p-~~- 72 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA-KPCGGAIP---LCMVDEFALPRDIIDR--RVTKMKMISP-SN- 72 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC-CCcccccc---HhhHhhccCchhHHHh--hhceeEEecC-Cc-
Confidence 589999999999999999999999999999976532 22344443 3567888887654432 2333333321 11
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe--CC-----C--cEEE
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL--GD-----S--TIIK 154 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~--~~-----g--~~~~ 154 (232)
....+...... ......++|..|.+.|.+.+. |++++.++ +.++....+.+.. +.|+. .+ | .+++
T Consensus 73 -~~~~~~~~~~~-~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~-~~v~~~~~~~~~~~g~~~~i~ 148 (398)
T TIGR02028 73 -IAVDIGRTLKE-HEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDP-YTLHYISSDSGGPSGTRCTLE 148 (398)
T ss_pred -eEEEeccCCCC-CCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCce-EEEEEeeccccccCCCccEEE
Confidence 12222211110 111236899999999998764 78887774 7777542210232 44442 22 3 3799
Q ss_pred ccEEEecCCCchhhhhhhcCCCCcccceeEEEEeeecCCC-CCCcccee-EEEe----cCeEEEEEEcCCCeEEEEE
Q 044609 155 AKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHG-HGLNQDIR-QFVG----VGFRAGFIPLNDRDVYWFL 225 (232)
Q Consensus 155 a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~----~~~~~~~~p~~~~~~~~~~ 225 (232)
|++||+|||.+|.+|+.++.+.. .....+...+..+.. ......+. .+++ ++.+.|++|.++. ....+
T Consensus 149 a~~VIgADG~~S~v~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~-~~VG~ 222 (398)
T TIGR02028 149 VDAVIGADGANSRVAKEIDAGDY--SYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGT 222 (398)
T ss_pred eCEEEECCCcchHHHHHhCCCCc--ceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCe-EEEEE
Confidence 99999999999999999986532 111222222222221 11222222 3333 3557999999854 44443
No 54
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.87 E-value=1.5e-20 Score=144.49 Aligned_cols=219 Identities=21% Similarity=0.208 Sum_probs=160.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCC--c-------CcceeeeecccHHHHHHHcCChHHHHh-h
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRL----GIKALVLEKSDGL--R-------ATGAALTLSPNAWLALDALGVSHKLTS-V 69 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~----g~~v~viE~~~~~--~-------~~~~~~~~~~~~~~~l~~~g~~~~~~~-~ 69 (232)
.+|||+||||||+|+++|..|... -.||.++|-...+ . -..+-..+.+.+...++.+|.|+.+.. .
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R 114 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDR 114 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhc
Confidence 369999999999999999999964 4699999988432 1 123455678889999999999998865 5
Q ss_pred ccCceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhh-----hCCCCeEEeCceEEEEEec-----CCCC
Q 044609 70 YAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALAD-----ELPDDTIQFSSKIAAIDSQ-----TLNG 139 (232)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~~~~~i~~~~~v~~i~~~-----~~~g 139 (232)
..+...+..++.... ..+.+.+.... ...++.+....+...|+. ..+++++....++.++... ++.+
T Consensus 115 ~~~~~~~~v~Ds~s~--a~I~~~~d~~~-~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~ 191 (481)
T KOG3855|consen 115 YQKFSRMLVWDSCSA--ALILFDHDNVG-IDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNG 191 (481)
T ss_pred cccccceeeecccch--hhhhhcccccc-ccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCc
Confidence 566666666654333 23333322220 233566777777777773 2237899999998888652 1114
Q ss_pred CccEEEEeCCCcEEEccEEEecCCCchhhhhhhcCCCCcc-cceeEEEEeeecCC-CCCCccceeEEEecCeEEEEEEcC
Q 044609 140 SSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESIN-SGRSSVRGLAVFPH-GHGLNQDIRQFVGVGFRAGFIPLN 217 (232)
Q Consensus 140 ~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~ 217 (232)
.. ..+.+.||..+.+|++|+|||.+|.+|+..+++.+.+ +.+++..++..+.+ ......+|+.|.+.|+ ++++|++
T Consensus 192 ~~-~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~Gp-iAllpl~ 269 (481)
T KOG3855|consen 192 MW-FHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGP-IALLPLS 269 (481)
T ss_pred ce-EEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCc-eeecccc
Confidence 45 8888999999999999999999999999999987765 56778888777766 3334567899999998 8899999
Q ss_pred CCeEEEEEEecC
Q 044609 218 DRDVYWFLNRYS 229 (232)
Q Consensus 218 ~~~~~~~~~~~~ 229 (232)
++- -.++|+.
T Consensus 270 d~~--s~LvWSt 279 (481)
T KOG3855|consen 270 DTL--SSLVWST 279 (481)
T ss_pred ccc--ccceeec
Confidence 975 3455544
No 55
>PLN02463 lycopene beta cyclase
Probab=99.85 E-value=2.4e-19 Score=145.16 Aligned_cols=196 Identities=17% Similarity=0.221 Sum_probs=122.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (232)
.+||+||||||+|+++|..|+++|++|+|+|+.+.... ...... ..+.++.+|+.+.+.... ....++....
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~-p~~~g~---w~~~l~~lgl~~~l~~~w---~~~~v~~~~~- 99 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIW-PNNYGV---WVDEFEALGLLDCLDTTW---PGAVVYIDDG- 99 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchh-ccccch---HHHHHHHCCcHHHHHhhC---CCcEEEEeCC-
Confidence 48999999999999999999999999999999754311 111111 235677888877664432 1222222111
Q ss_pred ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609 85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD 162 (232)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~ 162 (232)
.... . ......++|..|.+.|.+.+. +++++ ..+|++++..+ .. +.|++.+|.+++||+||+||
T Consensus 100 ~~~~------~---~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~---~~-~~V~~~dG~~i~A~lVI~Ad 165 (447)
T PLN02463 100 KKKD------L---DRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE---SK-SLVVCDDGVKIQASLVLDAT 165 (447)
T ss_pred CCcc------c---cCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC---Ce-EEEEECCCCEEEcCEEEECc
Confidence 1100 0 122346899999999988775 67775 56899998764 33 77888999899999999999
Q ss_pred CCchhhhhhhcCCCCcccce-eEEEEeeecCCCCCCccceeEEE----------------ec--CeEEEEEEcCCCeEEE
Q 044609 163 GVHSMVAQWLGLSESINSGR-SSVRGLAVFPHGHGLNQDIRQFV----------------GV--GFRAGFIPLNDRDVYW 223 (232)
Q Consensus 163 G~~S~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------~~--~~~~~~~p~~~~~~~~ 223 (232)
|.+|.+++. ..+...+. .++........ .+++.+...++ .. ..+++++|.++++++.
T Consensus 166 G~~s~l~~~---~~~~~~g~Q~a~Gi~~ev~~-~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~v 241 (447)
T PLN02463 166 GFSRCLVQY---DKPFNPGYQVAYGILAEVDS-HPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFL 241 (447)
T ss_pred CCCcCccCC---CCCCCccceeeeeEEeecCC-CCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEE
Confidence 999976542 22333333 33332333222 12222211110 00 3478999999998654
Q ss_pred EEE
Q 044609 224 FLN 226 (232)
Q Consensus 224 ~~~ 226 (232)
-.+
T Consensus 242 EeT 244 (447)
T PLN02463 242 EET 244 (447)
T ss_pred Eee
Confidence 443
No 56
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.85 E-value=1.7e-19 Score=146.76 Aligned_cols=216 Identities=21% Similarity=0.188 Sum_probs=131.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCC---CcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHH--HHhhccCc-eeeEEEE
Q 044609 7 DVVIIGAGIAGLATAVALRRLG---IKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHK--LTSVYAPA-KRVFVTN 80 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g---~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~--~~~~~~~~-~~~~~~~ 80 (232)
||+|||||++|.++|..|++.+ ++|+|||+...+. -+-|.+..|.....++.+|+.+. +.+..... .++.+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~-~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~ 79 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR-IGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN 79 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS----SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC-CCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence 7999999999999999999988 8999999887663 45678889999999999999877 44433332 2444433
Q ss_pred cCC-CceeEEeccC-------------------------------------------CCC---CCCCceeeeehHHHHHH
Q 044609 81 LGT-GATQELSYAG-------------------------------------------KSG---RIGSGLRSVHRQSLLEA 113 (232)
Q Consensus 81 ~~~-~~~~~~~~~~-------------------------------------------~~~---~~~~~~~~~~~~~l~~~ 113 (232)
+.. +.....+|.. ... ......+.++|..|.+.
T Consensus 80 w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~ 159 (454)
T PF04820_consen 80 WGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQF 159 (454)
T ss_dssp SSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHH
T ss_pred cCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHH
Confidence 221 1112222210 000 00234678999999999
Q ss_pred HhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhhhh-hcCCCCccc----ceeEEE
Q 044609 114 LADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQW-LGLSESINS----GRSSVR 186 (232)
Q Consensus 114 l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r~~-~~~~~~~~~----~~~~~~ 186 (232)
|.+.+. |++++.+ +|+++..+++ |.. ..|.+.+|++++||++|+|+|..|.+.+. ++.+..... ...++.
T Consensus 160 L~~~A~~~Gv~~~~g-~V~~v~~~~~-g~i-~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~ 236 (454)
T PF04820_consen 160 LRRHAEERGVEVIEG-TVVDVELDED-GRI-TAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVA 236 (454)
T ss_dssp HHHHHHHTT-EEEET--EEEEEE-TT-SEE-EEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEE
T ss_pred HHHHHhcCCCEEEeC-EEEEEEEcCC-CCE-EEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEE
Confidence 998874 8999887 5888877653 454 78899999999999999999999987655 433322221 122333
Q ss_pred EeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEecC
Q 044609 187 GLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYS 229 (232)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 229 (232)
....... +..+.......+..++|.+|++++... .++++.
T Consensus 237 ~~~~~~~--~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~ 276 (454)
T PF04820_consen 237 VQVPNED--PPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSS 276 (454)
T ss_dssp EEEE-SS--CTTSSEEEEEESSEEEEEEEESSEEEE-EEEEET
T ss_pred EecCcCC--CCCCceeEEecCCceEEEccCCCcceE-EEEecc
Confidence 2222222 223333344455667999999998766 555543
No 57
>PLN02697 lycopene epsilon cyclase
Probab=99.84 E-value=1.2e-18 Score=143.34 Aligned_cols=196 Identities=17% Similarity=0.190 Sum_probs=123.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (232)
.+||+||||||+|+++|..|++.|++|++||+...... ...+|. ..++.+++.+.+... +.....+.. .+
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~---n~GvW~---~~l~~lgl~~~i~~~---w~~~~v~~~-~~ 177 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVWE---DEFKDLGLEDCIEHV---WRDTIVYLD-DD 177 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCC---ccccch---hHHHhcCcHHHHHhh---cCCcEEEec-CC
Confidence 48999999999999999999999999999998643321 123332 456777776554432 222222221 11
Q ss_pred ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609 85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD 162 (232)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~ 162 (232)
..... ......++|..|.+.|.+.+. ++++ .+++|+++..++ +.. ..+.+.+|.++.|++||+||
T Consensus 178 ~~~~~---------~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~--~~~-~vv~~~dG~~i~A~lVI~Ad 244 (529)
T PLN02697 178 KPIMI---------GRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEAS--DGL-RLVACEDGRVIPCRLATVAS 244 (529)
T ss_pred ceeec---------cCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC--CcE-EEEEEcCCcEEECCEEEECC
Confidence 11111 111236899999999998765 6776 678999998764 232 33456788889999999999
Q ss_pred CCchhhhhhhcCC--CCcccceeEEEEeeecCCCCCCccceeEEEe---------------cCeEEEEEEcCCCeEEEEE
Q 044609 163 GVHSMVAQWLGLS--ESINSGRSSVRGLAVFPHGHGLNQDIRQFVG---------------VGFRAGFIPLNDRDVYWFL 225 (232)
Q Consensus 163 G~~S~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~~~ 225 (232)
|.+|. +.++.+ .+....+.++...+.... .+++++...+++ ...++|++|.+++++++--
T Consensus 245 G~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~-~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~ 321 (529)
T PLN02697 245 GAASG--RLLQYEVGGPRVCVQTAYGVEVEVEN-NPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEE 321 (529)
T ss_pred CcChh--hhhccccCCCCcccEEEEEEEEEecC-CCCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEE
Confidence 99993 333322 222334555444444332 123333233322 2357899999999877744
Q ss_pred E
Q 044609 226 N 226 (232)
Q Consensus 226 ~ 226 (232)
+
T Consensus 322 T 322 (529)
T PLN02697 322 T 322 (529)
T ss_pred e
Confidence 3
No 58
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.82 E-value=1e-17 Score=133.82 Aligned_cols=190 Identities=17% Similarity=0.189 Sum_probs=118.6
Q ss_pred cEEEECCCHHHHHHHHHH--HhCCCcEEEEecCCCCc-CcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609 7 DVVIIGAGIAGLATAVAL--RRLGIKALVLEKSDGLR-ATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT 83 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L--~~~g~~v~viE~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (232)
||+||||||||+++|..| ++.|.+|+|||+.+... ...+....+...... .+.+. ...+..+.+.....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~------~~~~v--~~~w~~~~v~~~~~ 72 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGP------LDSLV--SHRWSGWRVYFPDG 72 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccc------hHHHH--heecCceEEEeCCC
Confidence 899999999999999999 77899999999987651 111222222221111 11111 12223344433222
Q ss_pred CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC-CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609 84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP-DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD 162 (232)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~ 162 (232)
. .... ......+++..|.+.|.+.+. +..++.+.+|++++..+ .. +.|.+.+|.+++|++||+|+
T Consensus 73 ~-~~~~---------~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~---~~-~~v~~~~g~~i~a~~VvDa~ 138 (374)
T PF05834_consen 73 S-RILI---------DYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETG---DG-VLVVLADGRTIRARVVVDAR 138 (374)
T ss_pred c-eEEc---------ccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecC---ce-EEEEECCCCEEEeeEEEECC
Confidence 1 1111 122447999999999999886 56788899999998874 34 77889999999999999999
Q ss_pred CCchhhhhhhcCCCCcccceeEEEEe-eecCCCCCCcc---ceeEEE-----ecCeEEEEEEcCCCeEEEEEEe
Q 044609 163 GVHSMVAQWLGLSESINSGRSSVRGL-AVFPHGHGLNQ---DIRQFV-----GVGFRAGFIPLNDRDVYWFLNR 227 (232)
Q Consensus 163 G~~S~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~-----~~~~~~~~~p~~~~~~~~~~~~ 227 (232)
|..+.. ....+...+.|+ +....+ .+++ .++-|. ....+++++|+++++..+-.++
T Consensus 139 g~~~~~--------~~~~~~Q~f~G~~v~~~~~-~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~ 203 (374)
T PF05834_consen 139 GPSSPK--------ARPLGLQHFYGWEVETDEP-VFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETS 203 (374)
T ss_pred Cccccc--------ccccccceeEEEEEeccCC-CCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEE
Confidence 976641 111122223343 333332 2233 233222 2246788999999997765543
No 59
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.80 E-value=2.5e-17 Score=132.71 Aligned_cols=143 Identities=22% Similarity=0.323 Sum_probs=93.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCce
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGAT 86 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (232)
||+||||||+|+++|+.|++.|++|+|||+.+.... .....++.. .++++++.+.+.. .+........... .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~-~ 72 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG-NHTYGVWDD---DLSDLGLADCVEH---VWPDVYEYRFPKQ-P 72 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC-CccccccHh---hhhhhchhhHHhh---cCCCceEEecCCc-c
Confidence 899999999999999999999999999999875422 222333332 2334443222211 1111111111110 0
Q ss_pred eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609 87 QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV 164 (232)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~ 164 (232)
... ......+++..|.+.|.+.+. +++++ ..+|.++..++ +.. +.|.+.+|.+++|++||+|+|.
T Consensus 73 ~~~---------~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~--~~~-~~v~~~~g~~~~a~~VI~A~G~ 139 (388)
T TIGR01790 73 RKL---------GTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG--VAL-STVYCAGGQRIQARLVIDARGF 139 (388)
T ss_pred hhc---------CCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC--Cce-eEEEeCCCCEEEeCEEEECCCC
Confidence 000 222346899999999988765 56665 56888887663 244 7788888888999999999999
Q ss_pred chhhhh
Q 044609 165 HSMVAQ 170 (232)
Q Consensus 165 ~S~~r~ 170 (232)
+|.+++
T Consensus 140 ~s~~~~ 145 (388)
T TIGR01790 140 GPLVQY 145 (388)
T ss_pred chhccc
Confidence 996654
No 60
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.78 E-value=6.7e-18 Score=127.57 Aligned_cols=137 Identities=24% Similarity=0.307 Sum_probs=92.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc--ceee-----eecccHHHHHHHcCChHHHHhhccCceee
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT--GAAL-----TLSPNAWLALDALGVSHKLTSVYAPAKRV 76 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~--~~~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 76 (232)
.++||+||||||+|+++|+.|++.|++|+|+||...++.. +.+. .+.....++++++|+..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~------------ 91 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRY------------ 91 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCc------------
Confidence 4589999999999999999999999999999998876431 1111 11122233334333210
Q ss_pred EEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC------
Q 044609 77 FVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG------ 148 (232)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~------ 148 (232)
... ....+.+++..+.+.|.+.+. +++++++++|.++..+++ +.. ..+...
T Consensus 92 --~~~-----------------~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V-~Gvv~~~~~v~~ 150 (257)
T PRK04176 92 --KEV-----------------EDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILRED-PRV-AGVVINWTPVEM 150 (257)
T ss_pred --eee-----------------cCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCC-CcE-EEEEEccccccc
Confidence 000 011235678888888887664 899999999999987542 232 333321
Q ss_pred -----CCcEEEccEEEecCCCchhhhhhhc
Q 044609 149 -----DSTIIKAKVLIGCDGVHSMVAQWLG 173 (232)
Q Consensus 149 -----~g~~~~a~~vV~A~G~~S~~r~~~~ 173 (232)
+..+++|++||+|+|++|.+.+.+.
T Consensus 151 ~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~ 180 (257)
T PRK04176 151 AGLHVDPLTIEAKAVVDATGHDAEVVSVLA 180 (257)
T ss_pred cCCCCCcEEEEcCEEEEEeCCCcHHHHHHH
Confidence 2247999999999999998877663
No 61
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.77 E-value=1.4e-17 Score=128.57 Aligned_cols=147 Identities=26% Similarity=0.335 Sum_probs=95.4
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC----ccee---eeecccHHHHHHHcCCh-HHHHh---hcc
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA----TGAA---LTLSPNAWLALDALGVS-HKLTS---VYA 71 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~----~~~~---~~~~~~~~~~l~~~g~~-~~~~~---~~~ 71 (232)
|+.+||+||||||||++||..++++|.+|+|||+.+.++. +|.| +......-+.+.+.+-- ..+.. ...
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 3568999999999999999999999999999999988742 2222 22111222333333211 11111 111
Q ss_pred Cce--------eeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCc
Q 044609 72 PAK--------RVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSS 141 (232)
Q Consensus 72 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~ 141 (232)
+.+ ++.+.....++. .+ -...-..++++|...++ +++++.+++|.+++.++ ..
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~------------Fp--~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~---~~ 143 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRM------------FP--DSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD---SG 143 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCcee------------cC--CccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC---ce
Confidence 111 111111111110 00 01345678888888775 89999999999999874 44
Q ss_pred cEEEEeCCCcEEEccEEEecCCCchh
Q 044609 142 AAIINLGDSTIIKAKVLIGCDGVHSM 167 (232)
Q Consensus 142 ~~~v~~~~g~~~~a~~vV~A~G~~S~ 167 (232)
..+.+++|++++||.+|+|+|..|.
T Consensus 144 -f~l~t~~g~~i~~d~lilAtGG~S~ 168 (408)
T COG2081 144 -FRLDTSSGETVKCDSLILATGGKSW 168 (408)
T ss_pred -EEEEcCCCCEEEccEEEEecCCcCC
Confidence 8899999989999999999998773
No 62
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.77 E-value=2.2e-17 Score=142.46 Aligned_cols=141 Identities=21% Similarity=0.307 Sum_probs=103.0
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcC--ChHHHHhhccCceeeEEEEcC
Q 044609 7 DVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALG--VSHKLTSVYAPAKRVFVTNLG 82 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~~~~ 82 (232)
+|+||||||+|+++|+.|+++ |++|+|+||.+.....|.++.+++++++.|+.++ +...+...........+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHF-- 79 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEE--
Confidence 699999999999999999998 8999999999887777889999999999988776 2233333333333333322
Q ss_pred CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEe
Q 044609 83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG 160 (232)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~ 160 (232)
.+.... . . ......++|..|.+.|.+.+. +++++++++|+++.. . ...||+||+
T Consensus 80 ~g~~~~-~----~---g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~--------~--------~~~~D~VVg 135 (765)
T PRK08255 80 KGRRIR-S----G---GHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA--------L--------AADADLVIA 135 (765)
T ss_pred CCEEEE-E----C---CeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh--------h--------hcCCCEEEE
Confidence 121110 0 1 122335889999999998875 789999988765421 1 147899999
Q ss_pred cCCCchhhhhhhc
Q 044609 161 CDGVHSMVAQWLG 173 (232)
Q Consensus 161 A~G~~S~~r~~~~ 173 (232)
|||.+|.+|+.+.
T Consensus 136 ADG~~S~vR~~~~ 148 (765)
T PRK08255 136 SDGLNSRIRTRYA 148 (765)
T ss_pred cCCCCHHHHHHHH
Confidence 9999999999764
No 63
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.74 E-value=8.6e-17 Score=121.17 Aligned_cols=137 Identities=22% Similarity=0.327 Sum_probs=89.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce--ee-----eecccHHHHHHHcCChHHHHhhccCceee
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA--AL-----TLSPNAWLALDALGVSHKLTSVYAPAKRV 76 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~--~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 76 (232)
.++||+||||||+|+++|+.|+++|++|+|+||...++.... +. .+.....+.++++|+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~------------- 86 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIR------------- 86 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCC-------------
Confidence 458999999999999999999999999999999987642211 10 0111122222222211
Q ss_pred EEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC------
Q 044609 77 FVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG------ 148 (232)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~------ 148 (232)
+ ... ....+..++..+.+.|.+.+. +++++++++|.++..+++.... ..|.+.
T Consensus 87 -~-------------~~~----~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V-~GVv~~~~~v~~ 147 (254)
T TIGR00292 87 -Y-------------EDE----GDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGV-AGVVINWSAIEL 147 (254)
T ss_pred -e-------------eec----cCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCce-EEEEeCCccccc
Confidence 0 000 111234577888888887663 7899999999999876520022 344332
Q ss_pred -----CCcEEEccEEEecCCCchhhhhhh
Q 044609 149 -----DSTIIKAKVLIGCDGVHSMVAQWL 172 (232)
Q Consensus 149 -----~g~~~~a~~vV~A~G~~S~~r~~~ 172 (232)
+..++.|++||.|||+.|.+.+.+
T Consensus 148 ~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 148 AGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred cCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 123799999999999998765544
No 64
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.72 E-value=6.9e-16 Score=122.94 Aligned_cols=185 Identities=19% Similarity=0.255 Sum_probs=110.5
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHh-----hccCceeeEEE
Q 044609 7 DVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTS-----VYAPAKRVFVT 79 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-----~~~~~~~~~~~ 79 (232)
||+|||||++|+++|..|++. |++|+++|+.+.... .+...++.. ++.+.... ....+..+.++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~-~~tw~~~~~--------~~~~~~~~~~~~~v~~~W~~~~v~ 71 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG-NHTWSFFDS--------DLSDAQHAWLADLVQTDWPGYEVR 71 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC-cccceeccc--------ccchhhhhhhhhhheEeCCCCEEE
Confidence 899999999999999999987 999999999864432 112222221 11111100 11122222222
Q ss_pred EcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEE
Q 044609 80 NLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLI 159 (232)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV 159 (232)
.. + ..... ......+++..|.+.+.+.+.. .++.+++|+++. + +. +.+ .+|.+++|++||
T Consensus 72 ~~--~------~~~~l---~~~Y~~I~r~~f~~~l~~~l~~-~i~~~~~V~~v~--~---~~-v~l--~dg~~~~A~~VI 131 (370)
T TIGR01789 72 FP--K------YRRKL---KTAYRSMTSTRFHEGLLQAFPE-GVILGRKAVGLD--A---DG-VDL--APGTRINARSVI 131 (370)
T ss_pred Cc--c------hhhhc---CCCceEEEHHHHHHHHHHhhcc-cEEecCEEEEEe--C---CE-EEE--CCCCEEEeeEEE
Confidence 10 0 11111 2234589999999999887753 377789999883 2 22 444 788899999999
Q ss_pred ecCCCchhhhhhhcCCCCcccceeEEEEe-eecCCCCCCccc---eeEEE---ec-CeEEEEEEcCCCeEEEEEEecCC
Q 044609 160 GCDGVHSMVAQWLGLSESINSGRSSVRGL-AVFPHGHGLNQD---IRQFV---GV-GFRAGFIPLNDRDVYWFLNRYSP 230 (232)
Q Consensus 160 ~A~G~~S~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~---~~-~~~~~~~p~~~~~~~~~~~~~~~ 230 (232)
+|+|.+|.- ....++..+.|+ .....+ +++. ++-|. .+ ..+++++|+++++.++-.++..+
T Consensus 132 ~A~G~~s~~--------~~~~~~Q~f~G~~~r~~~p--~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~ 200 (370)
T TIGR01789 132 DCRGFKPSA--------HLKGGFQVFLGREMRLQEP--HGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYAD 200 (370)
T ss_pred ECCCCCCCc--------cccceeeEEEEEEEEEcCC--CCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccC
Confidence 999998741 111344444443 223322 3333 22222 23 34566699999998887766554
No 65
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.71 E-value=7.1e-16 Score=123.80 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=48.7
Q ss_pred eeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609 102 LRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM 167 (232)
Q Consensus 102 ~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~ 167 (232)
...++...+...+.+.+. +++++++++|+++..++ .. +.|.+++| ++.||.||+|+|.++.
T Consensus 143 ~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~---~~-~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 143 GGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADG---DG-VTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred CCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeC---Ce-EEEEeCCC-EEEeeEEEEecCcchh
Confidence 346777888887766553 78999999999998764 34 77887777 6999999999999974
No 66
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.70 E-value=2.9e-15 Score=124.20 Aligned_cols=167 Identities=18% Similarity=0.152 Sum_probs=94.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeecccHHHHHHHcCCh---------HHHHhhccC-
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPNAWLALDALGVS---------HKLTSVYAP- 72 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~~g~~---------~~~~~~~~~- 72 (232)
.++||+|||||++|+++|+.|+++|++|+||||++.. +.++++..+-..+.+.++...+. ..+......
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap~l 84 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPHI 84 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCCcc
Confidence 4599999999999999999999999999999999654 23333333333333333221110 000010000
Q ss_pred ce--eeEEEEcCCCc-----------------------eeEEecc----------CCCCCCCCceeeeehHHHHHHHhhh
Q 044609 73 AK--RVFVTNLGTGA-----------------------TQELSYA----------GKSGRIGSGLRSVHRQSLLEALADE 117 (232)
Q Consensus 73 ~~--~~~~~~~~~~~-----------------------~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~l~~~ 117 (232)
.. .+.+....... ...++.. ...+.+.+....++...+...+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~l~~~ 164 (502)
T PRK13369 85 IWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNALD 164 (502)
T ss_pred ccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHHHHHH
Confidence 00 00000000000 0001100 0000011122346778888777765
Q ss_pred CC--CCeEEeCceEEEEEecCCCCCccEEEEeCCC----cEEEccEEEecCCCchh-hhh-hhcC
Q 044609 118 LP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDS----TIIKAKVLIGCDGVHSM-VAQ-WLGL 174 (232)
Q Consensus 118 ~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g----~~~~a~~vV~A~G~~S~-~r~-~~~~ 174 (232)
+. |++++.+++|+++..++ .. +.|.+.++ .++.|+.||+|+|.||. +.+ .++.
T Consensus 165 a~~~Ga~i~~~~~V~~i~~~~---~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~ 225 (502)
T PRK13369 165 AAERGATILTRTRCVSARREG---GL-WRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGS 225 (502)
T ss_pred HHHCCCEEecCcEEEEEEEcC---CE-EEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCC
Confidence 53 88999999999998763 33 55665554 26899999999999984 544 3354
No 67
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.70 E-value=1.3e-15 Score=126.21 Aligned_cols=170 Identities=18% Similarity=0.209 Sum_probs=94.1
Q ss_pred CCcc-cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeecccHHHHHHHcCC-------hH--HHHhh
Q 044609 1 MEMV-EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPNAWLALDALGV-------SH--KLTSV 69 (232)
Q Consensus 1 m~~~-~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~~g~-------~~--~~~~~ 69 (232)
|+|+ .+||+|||||++|+++|+.|+++|++|+||||++.. +.++++..+...+.+.+....+ .+ .+...
T Consensus 1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~ 80 (508)
T PRK12266 1 MTMMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRM 80 (508)
T ss_pred CCCCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHh
Confidence 5554 499999999999999999999999999999998653 3334444444444333322110 00 00010
Q ss_pred ccCc-eeeEE--EE------------------c-C-CCce---eEEec------c----CCCCCCCCceeeeehHHHHHH
Q 044609 70 YAPA-KRVFV--TN------------------L-G-TGAT---QELSY------A----GKSGRIGSGLRSVHRQSLLEA 113 (232)
Q Consensus 70 ~~~~-~~~~~--~~------------------~-~-~~~~---~~~~~------~----~~~~~~~~~~~~~~~~~l~~~ 113 (232)
...+ ....+ .. . . .... ..+.+ + ...+.+.+....++...+...
T Consensus 81 ~p~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~~~ 160 (508)
T PRK12266 81 APHIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLVVL 160 (508)
T ss_pred CCCcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHHHH
Confidence 0000 00000 00 0 0 0000 00000 0 000000111124566777777
Q ss_pred HhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCC---Cc--EEEccEEEecCCCchh-hhhh-hcC
Q 044609 114 LADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGD---ST--IIKAKVLIGCDGVHSM-VAQW-LGL 174 (232)
Q Consensus 114 l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~---g~--~~~a~~vV~A~G~~S~-~r~~-~~~ 174 (232)
+.+.+. |++++.+++|+++..++ .. +.|.+.+ |+ ++.|+.||+|+|.|+. +.+. ++.
T Consensus 161 l~~~A~~~Ga~i~~~~~V~~i~~~~---~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~ 226 (508)
T PRK12266 161 NARDAAERGAEILTRTRVVSARREN---GL-WHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGL 226 (508)
T ss_pred HHHHHHHcCCEEEcCcEEEEEEEeC---CE-EEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCC
Confidence 665543 88999999999998753 33 5555543 43 7899999999999984 4443 354
No 68
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.70 E-value=3.9e-15 Score=120.11 Aligned_cols=166 Identities=24% Similarity=0.368 Sum_probs=97.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCc--Ccce--ee-----eecccH-HHHHHH--cCChHHHHhh-
Q 044609 5 EEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLR--ATGA--AL-----TLSPNA-WLALDA--LGVSHKLTSV- 69 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~--~~~~--~~-----~~~~~~-~~~l~~--~g~~~~~~~~- 69 (232)
.+||+|||||++|+++|+.|+++ |.+|+|+||...+. .+++ +. ...+.. ...|.. ..++.++.+.
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 38999999999999999999998 99999999986442 1221 11 111111 111111 1111111111
Q ss_pred ccCce--eeEEEE-------------------------cCCCce-eEEecc-CCCCCCCCceeeeehHHHHHHHhhhCC-
Q 044609 70 YAPAK--RVFVTN-------------------------LGTGAT-QELSYA-GKSGRIGSGLRSVHRQSLLEALADELP- 119 (232)
Q Consensus 70 ~~~~~--~~~~~~-------------------------~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~- 119 (232)
..++. +..+.. ...... ...+.. ...+.+.+....++...+.+.|.+.+.
T Consensus 82 ~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~~ 161 (393)
T PRK11728 82 GIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQA 161 (393)
T ss_pred CCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHHh
Confidence 11110 111111 000000 000000 011112344467888999999987764
Q ss_pred -CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch-hhhhhhcCC
Q 044609 120 -DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS-MVAQWLGLS 175 (232)
Q Consensus 120 -~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S-~~r~~~~~~ 175 (232)
|++++++++|.++..++ .. +.|.+.++ ++.||.||+|+|.+| .+.+.++.+
T Consensus 162 ~Gv~i~~~~~V~~i~~~~---~~-~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 162 RGGEIRLGAEVTALDEHA---NG-VVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred CCCEEEcCCEEEEEEecC---Ce-EEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence 78999999999998753 33 66777776 699999999999998 466777754
No 69
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.70 E-value=2.2e-15 Score=119.96 Aligned_cols=74 Identities=22% Similarity=0.295 Sum_probs=56.5
Q ss_pred CceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEE-EEeCCCcEEEccEEEecCCCchhh-hhhhcCC
Q 044609 100 SGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAI-INLGDSTIIKAKVLIGCDGVHSMV-AQWLGLS 175 (232)
Q Consensus 100 ~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~-v~~~~g~~~~a~~vV~A~G~~S~~-r~~~~~~ 175 (232)
+....++...+.+.|.+.+. |++++.+++|+++..++ .. +. |.+.+|+ +.||.||+|+|.+|.. .+.++.+
T Consensus 139 ~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~---~~-v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~~ 213 (358)
T PF01266_consen 139 PEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG---GR-VTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGLD 213 (358)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET---TE-EEEEEETTEE-EEECEEEE--GGGHHHHHHTTTTS
T ss_pred cccccccccchhhhhHHHHHHhhhhccccccccchhhcc---cc-cccccccccc-cccceeEecccccceeeeeccccc
Confidence 45667899999999998764 89999999999999874 33 55 9999998 9999999999999853 5555554
Q ss_pred CCc
Q 044609 176 ESI 178 (232)
Q Consensus 176 ~~~ 178 (232)
.+.
T Consensus 214 ~~~ 216 (358)
T PF01266_consen 214 LPL 216 (358)
T ss_dssp STE
T ss_pred ccc
Confidence 433
No 70
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.69 E-value=1e-15 Score=121.64 Aligned_cols=171 Identities=29% Similarity=0.441 Sum_probs=106.1
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCcCc---------ceeeeecccHHH-------------HHH
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGLRAT---------GAALTLSPNAWL-------------ALD 58 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~~~~---------~~~~~~~~~~~~-------------~l~ 58 (232)
|+.+||+|||||+.|+++|+.|++.. ++|+|+||...+... ..++.+.+.+.. +-+
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k 80 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK 80 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHH
Confidence 35689999999999999999999998 999999999876321 123333333111 112
Q ss_pred HcCCh----------------HHHHhhccC--ceeeE-EEEcCCCceeEE-ecc---CCCCCCCCceeeeehHHHHHHHh
Q 044609 59 ALGVS----------------HKLTSVYAP--AKRVF-VTNLGTGATQEL-SYA---GKSGRIGSGLRSVHRQSLLEALA 115 (232)
Q Consensus 59 ~~g~~----------------~~~~~~~~~--~~~~~-~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~l~~~l~ 115 (232)
++++. +.++..... ..+.. ....+..+...+ +.. ...+.+-+....++...+...|.
T Consensus 81 q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~ 160 (429)
T COG0579 81 QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA 160 (429)
T ss_pred HhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence 22210 001100000 00111 111111111111 111 11111244556788888888888
Q ss_pred hhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcE-EEccEEEecCCCch-hhhhhhcCCC
Q 044609 116 DELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTI-IKAKVLIGCDGVHS-MVAQWLGLSE 176 (232)
Q Consensus 116 ~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~-~~a~~vV~A~G~~S-~~r~~~~~~~ 176 (232)
+.+. |++++++++|++++..++ | . ..+.+.+|++ ++|++||.|.|.+| .+.+..+.+.
T Consensus 161 e~a~~~g~~i~ln~eV~~i~~~~d-g-~-~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 161 EEAQANGVELRLNTEVTGIEKQSD-G-V-FVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred HHHHHcCCEEEecCeeeEEEEeCC-c-e-EEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc
Confidence 8764 899999999999999863 2 4 7788888876 99999999999998 5777777654
No 71
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.69 E-value=4.9e-15 Score=119.13 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=57.8
Q ss_pred CceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc-hhhhhhhcCCC
Q 044609 100 SGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH-SMVAQWLGLSE 176 (232)
Q Consensus 100 ~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~-S~~r~~~~~~~ 176 (232)
+....++...+.+.|.+.+. +++++.+++|+++..++ .. +.|.+.++ ++.||.||+|+|.+ +.+++.++...
T Consensus 137 ~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~---~~-~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~ 211 (380)
T TIGR01377 137 PNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTE---LL-VTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEI 211 (380)
T ss_pred CCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC---Ce-EEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCC
Confidence 34457788888888877654 78999999999998763 33 66777666 69999999999987 56777777665
Q ss_pred Cccc
Q 044609 177 SINS 180 (232)
Q Consensus 177 ~~~~ 180 (232)
+..+
T Consensus 212 ~~~~ 215 (380)
T TIGR01377 212 PLQP 215 (380)
T ss_pred CceE
Confidence 5443
No 72
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.67 E-value=8.6e-16 Score=122.94 Aligned_cols=142 Identities=25% Similarity=0.315 Sum_probs=75.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC----cc---eeeee---------------cccHHHHHHHcCCh
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA----TG---AALTL---------------SPNAWLALDALGVS 63 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~----~~---~~~~~---------------~~~~~~~l~~~g~~ 63 (232)
|||+|||||+||++||+.|++.|.+|+|+||++.++. +| +.+.. .......+++++..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 7999999999999999999999999999999987632 11 11111 00122334444322
Q ss_pred HHHHhhccCceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCc
Q 044609 64 HKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSS 141 (232)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~ 141 (232)
+- ..-... .++......+++ .++. .-....+++.|.+.+. +++++++++|.+++.++ +..
T Consensus 81 d~-~~ff~~-~Gv~~~~~~~gr--~fP~------------s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~ 142 (409)
T PF03486_consen 81 DL-IAFFEE-LGVPTKIEEDGR--VFPK------------SDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE--DGV 142 (409)
T ss_dssp HH-HHHHHH-TT--EEE-STTE--EEET------------T--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET--TEE
T ss_pred HH-HHHHHh-cCCeEEEcCCCE--ECCC------------CCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC--Cce
Confidence 21 111100 011111111111 1111 1235677777777665 89999999999998865 344
Q ss_pred cEEEEeCCCcEEEccEEEecCCCch
Q 044609 142 AAIINLGDSTIIKAKVLIGCDGVHS 166 (232)
Q Consensus 142 ~~~v~~~~g~~~~a~~vV~A~G~~S 166 (232)
+.|.++++.++.||.||+|+|..|
T Consensus 143 -f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 143 -FGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp -EEEEETTTEEEEESEEEE----SS
T ss_pred -eEeeccCcccccCCEEEEecCCCC
Confidence 778887778899999999999876
No 73
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.66 E-value=6e-15 Score=104.95 Aligned_cols=136 Identities=22% Similarity=0.324 Sum_probs=92.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce--e-----eeecccHHHHHHHcCChHHHHhhccCceeeE
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA--A-----LTLSPNAWLALDALGVSHKLTSVYAPAKRVF 77 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~--~-----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 77 (232)
+.||+||||||+||++|+.|+++|+||+|+||+-.++...+ | +.+...+.++|+++|+...
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye------------ 97 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYE------------ 97 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcce------------
Confidence 36999999999999999999999999999999988854322 1 2234456667777654221
Q ss_pred EEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC-C-CCeEEeCceEEEEEecCCCCCc-cEEEEeC------
Q 044609 78 VTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL-P-DDTIQFSSKIAAIDSQTLNGSS-AAIINLG------ 148 (232)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-~~~i~~~~~v~~i~~~~~~g~~-~~~v~~~------ 148 (232)
. . ....+..+...+...|...+ + +.+++.+..|+++...++ ... .+.+.+.
T Consensus 98 --~-------------~----e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~-~rVaGvVvNWt~V~~~~ 157 (262)
T COG1635 98 --E-------------E----EDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDD-PRVAGVVVNWTPVQMAG 157 (262)
T ss_pred --e-------------c----CCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecC-CceEEEEEecchhhhcc
Confidence 0 0 12234556667777666543 3 789999999999988762 122 1222221
Q ss_pred ---CCcEEEccEEEecCCCchhhhhhh
Q 044609 149 ---DSTIIKAKVLIGCDGVHSMVAQWL 172 (232)
Q Consensus 149 ---~g~~~~a~~vV~A~G~~S~~r~~~ 172 (232)
|--+++|++||.|||+-..+-+.+
T Consensus 158 lhvDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 158 LHVDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred cccCcceeeEEEEEeCCCCchHHHHHH
Confidence 123799999999999987654433
No 74
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.66 E-value=2.1e-15 Score=107.76 Aligned_cols=133 Identities=27% Similarity=0.360 Sum_probs=84.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcc--e-----eeeecccHHHHHHHcCChHHHHhhccCceee
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATG--A-----ALTLSPNAWLALDALGVSHKLTSVYAPAKRV 76 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~--~-----~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 76 (232)
.++||+||||||+|+++|+.|++.|+||++|||+..++..- . .+.+...+..+|+++|+.-.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~----------- 84 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE----------- 84 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E-----------
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE-----------
Confidence 35899999999999999999999999999999998875421 1 23455567777777764211
Q ss_pred EEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC--CCCeEEeCceEEEEEecCCCCCc-cEEEEeC----C
Q 044609 77 FVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL--PDDTIQFSSKIAAIDSQTLNGSS-AAIINLG----D 149 (232)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~i~~~~~v~~i~~~~~~g~~-~~~v~~~----~ 149 (232)
. + ....+..+...+...|...+ +|++++..+.|+++...++ +.. .+.+.+. .
T Consensus 85 ---~----------~-------~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~ 143 (230)
T PF01946_consen 85 ---E----------Y-------GDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMA 143 (230)
T ss_dssp ---E------------------SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT
T ss_pred ---E----------e-------CCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHh
Confidence 0 0 12244567777777766543 3899999999999987752 232 1222221 2
Q ss_pred C-----cEEEccEEEecCCCchhh
Q 044609 150 S-----TIIKAKVLIGCDGVHSMV 168 (232)
Q Consensus 150 g-----~~~~a~~vV~A~G~~S~~ 168 (232)
| -+++|++||.|||+-+.+
T Consensus 144 glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 144 GLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp --T-B-EEEEESEEEE---SSSSS
T ss_pred hcCCCcceEEEeEEEeCCCCchHH
Confidence 2 289999999999998754
No 75
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.66 E-value=5.5e-15 Score=119.86 Aligned_cols=114 Identities=12% Similarity=-0.004 Sum_probs=68.0
Q ss_pred eeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch-hhhhhhcCCCCcc
Q 044609 103 RSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS-MVAQWLGLSESIN 179 (232)
Q Consensus 103 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S-~~r~~~~~~~~~~ 179 (232)
..++...+...|.+.+. |++++.+++|++++..++ +.. +.|.+.+| ++.|+.||+|+|.++ .+++.++...+..
T Consensus 178 g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~-~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~~~ 254 (407)
T TIGR01373 178 GTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDG-GRV-IGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLPIE 254 (407)
T ss_pred CcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcE-EEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCCcC
Confidence 45666777777766653 899999999999976432 333 56777777 589998877766665 6777777665543
Q ss_pred cceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEE
Q 044609 180 SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWF 224 (232)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 224 (232)
.....+..+ .+.. +..+. .+...+..+++.|.+++++.+.
T Consensus 255 ~~~~~~~~~--~~~~-~~~~~--~~~~~~~~~y~~p~~~g~~~ig 294 (407)
T TIGR01373 255 SHPLQALVS--EPLK-PIIDT--VVMSNAVHFYVSQSDKGELVIG 294 (407)
T ss_pred cccceEEEe--cCCC-CCcCC--eEEeCCCceEEEEcCCceEEEe
Confidence 332222111 1111 11111 1223333467788887765443
No 76
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.64 E-value=1.7e-14 Score=116.99 Aligned_cols=216 Identities=21% Similarity=0.244 Sum_probs=123.5
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeecccHHHHHHHcCCh---HHHHh-----hcc
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPNAWLALDALGVS---HKLTS-----VYA 71 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~~g~~---~~~~~-----~~~ 71 (232)
|.++++||+|||||+.|+-+|..++.+|++|+|+|+++.. +.++++..+-+.+.+.+++..+. +.+.+ ...
T Consensus 8 ~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~A 87 (532)
T COG0578 8 LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIA 87 (532)
T ss_pred ccccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhC
Confidence 3446799999999999999999999999999999999876 56777778888888877765432 11111 111
Q ss_pred Cc-----eeeEEEEc-----------------CCCc------eeEEecc------------CCCCCCCCceeeeehHHHH
Q 044609 72 PA-----KRVFVTNL-----------------GTGA------TQELSYA------------GKSGRIGSGLRSVHRQSLL 111 (232)
Q Consensus 72 ~~-----~~~~~~~~-----------------~~~~------~~~~~~~------------~~~~~~~~~~~~~~~~~l~ 111 (232)
|. ....-... ..+. ...++.. ...+-+.+.-.+++..+|.
T Consensus 88 PH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv 167 (532)
T COG0578 88 PHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLV 167 (532)
T ss_pred ccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHH
Confidence 11 00000000 0000 0000000 0000011222355555555
Q ss_pred HHHhhhC--CCCeEEeCceEEEEEecCCCCCccEEEEeCCC---c--EEEccEEEecCCCch-hhhhhhcCCCCccccee
Q 044609 112 EALADEL--PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS---T--IIKAKVLIGCDGVHS-MVAQWLGLSESINSGRS 183 (232)
Q Consensus 112 ~~l~~~~--~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g---~--~~~a~~vV~A~G~~S-~~r~~~~~~~~~~~~~~ 183 (232)
-.....+ .|.+++..++|+++..++ + . +.|+..|. + .++|+.||+|+|.|+ .+++..+...+......
T Consensus 168 ~~~a~~A~~~Ga~il~~~~v~~~~re~--~-v-~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr 243 (532)
T COG0578 168 AANARDAAEHGAEILTYTRVESLRREG--G-V-WGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVR 243 (532)
T ss_pred HHHHHHHHhcccchhhcceeeeeeecC--C-E-EEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccce
Confidence 5444333 378999999999999875 4 4 77776653 2 689999999999998 46777754422110110
Q ss_pred EEEEe-eecCCCCCCccceeEEEe-cCeEEEEEEcCCCe
Q 044609 184 SVRGL-AVFPHGHGLNQDIRQFVG-VGFRAGFIPLNDRD 220 (232)
Q Consensus 184 ~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~ 220 (232)
...|. +.++...+.+..+...+. ++....++|-.+..
T Consensus 244 ~skGsHlVv~~~~~~~~a~~~~~~~d~r~~f~iP~~~~~ 282 (532)
T COG0578 244 PSKGSHLVVDKKFPINQAVINRCRKDGRIVFAIPYEGKT 282 (532)
T ss_pred eccceEEEecccCCCCceEEeecCCCCceEEEecCCCCE
Confidence 11111 222222222344444444 55556667777654
No 77
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.64 E-value=5.3e-15 Score=111.48 Aligned_cols=175 Identities=22% Similarity=0.246 Sum_probs=106.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeec----c---------cHHHHHHHcCChHHHHhhc
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLS----P---------NAWLALDALGVSHKLTSVY 70 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~----~---------~~~~~l~~~g~~~~~~~~~ 70 (232)
+..||+|||||+-|+++|+.|+++|.+++++|+.+.+...|.+...+ + -..+.++++--.+.+....
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~ 85 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK 85 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhcee
Confidence 34899999999999999999999999999999998885544332211 0 0112222221001000000
Q ss_pred cCceeeEEE------------------------EcCCCce-eE----Eecc-CCCCCCCCceeeeehHHHHHHHhhhCC-
Q 044609 71 APAKRVFVT------------------------NLGTGAT-QE----LSYA-GKSGRIGSGLRSVHRQSLLEALADELP- 119 (232)
Q Consensus 71 ~~~~~~~~~------------------------~~~~~~~-~~----~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~- 119 (232)
.......++ ...+.++ .. ++++ ...+.....+.++...+-++++...+.
T Consensus 86 ~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~ 165 (399)
T KOG2820|consen 86 LHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKARE 165 (399)
T ss_pred ecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHH
Confidence 000000000 0001111 11 1111 112222445668888888888887775
Q ss_pred -CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch--hhhhhhcCCCCcc
Q 044609 120 -DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS--MVAQWLGLSESIN 179 (232)
Q Consensus 120 -~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S--~~r~~~~~~~~~~ 179 (232)
|+.++.+.+|+.++..++++.. +.|.+.+|..+.|+-+|.|.|+|- .++..++...|..
T Consensus 166 ~G~i~~dg~~v~~~~~~~e~~~~-v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~Pv~ 227 (399)
T KOG2820|consen 166 LGVIFRDGEKVKFIKFVDEEGNH-VSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFPVA 227 (399)
T ss_pred cCeEEecCcceeeEeeccCCCce-eEEEeccCCeeecceEEEEecHHHHhhcCcccccCCccc
Confidence 8899999999998865443566 889999999999999999999994 3444455555543
No 78
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.62 E-value=5.9e-14 Score=113.97 Aligned_cols=70 Identities=16% Similarity=0.281 Sum_probs=49.7
Q ss_pred eeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCC-----cEEEccEEEecCCCchh-hhhhhcCC
Q 044609 104 SVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDS-----TIIKAKVLIGCDGVHSM-VAQWLGLS 175 (232)
Q Consensus 104 ~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g-----~~~~a~~vV~A~G~~S~-~r~~~~~~ 175 (232)
.++...+.+.|.+.+. |++++.+++|++++.++ .. +.+.+.++ .+++||.||+|+|.+|. +.+.++..
T Consensus 193 ~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~---~~-~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~ 268 (410)
T PRK12409 193 TGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG---GG-VVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDR 268 (410)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC---CE-EEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCCC
Confidence 4566677777777664 89999999999998753 33 44443332 37899999999999974 55555554
Q ss_pred CC
Q 044609 176 ES 177 (232)
Q Consensus 176 ~~ 177 (232)
.+
T Consensus 269 ~~ 270 (410)
T PRK12409 269 VN 270 (410)
T ss_pred Cc
Confidence 44
No 79
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.62 E-value=7.4e-15 Score=121.42 Aligned_cols=148 Identities=20% Similarity=0.215 Sum_probs=87.1
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC-CCcCcceeeeec----ccHHHHHHHcCC-hHHHHhhccCceee
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD-GLRATGAALTLS----PNAWLALDALGV-SHKLTSVYAPAKRV 76 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~-~~~~~~~~~~~~----~~~~~~l~~~g~-~~~~~~~~~~~~~~ 76 (232)
+.+|||+|||||+||+.+|+.++|.|.+|+++|+.. .++.-++.-.+. ....+.++.+|- ....... ...
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~----~gi 77 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDK----TGI 77 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhh----ccC
Confidence 456999999999999999999999999999999874 222111110010 011222233331 1111110 011
Q ss_pred EEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEE
Q 044609 77 FVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTII 153 (232)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~ 153 (232)
.+.......- +.. ......+++..+.+.|.+.+. +++++ ...|.++..++ +.. ..|.+.+|..+
T Consensus 78 q~r~ln~skG-----pAV----~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~--grV-~GV~t~dG~~I 144 (618)
T PRK05192 78 QFRMLNTSKG-----PAV----RALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVEN--GRV-VGVVTQDGLEF 144 (618)
T ss_pred ceeecccCCC-----Cce----eCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecC--CEE-EEEEECCCCEE
Confidence 1111110000 000 111125677777787766553 67764 56788887664 444 66888899999
Q ss_pred EccEEEecCCCchh
Q 044609 154 KAKVLIGCDGVHSM 167 (232)
Q Consensus 154 ~a~~vV~A~G~~S~ 167 (232)
.|+.||+|+|.++.
T Consensus 145 ~Ak~VIlATGTFL~ 158 (618)
T PRK05192 145 RAKAVVLTTGTFLR 158 (618)
T ss_pred ECCEEEEeeCcchh
Confidence 99999999998763
No 80
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.62 E-value=4e-14 Score=116.49 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=55.0
Q ss_pred CceeeeehHHHHHHHhhhCC--C-CeEEeCceEEEEEecCCCCCccEEEEe---CCCc--EEEccEEEecCCCch-hhhh
Q 044609 100 SGLRSVHRQSLLEALADELP--D-DTIQFSSKIAAIDSQTLNGSSAAIINL---GDST--IIKAKVLIGCDGVHS-MVAQ 170 (232)
Q Consensus 100 ~~~~~~~~~~l~~~l~~~~~--~-~~i~~~~~v~~i~~~~~~g~~~~~v~~---~~g~--~~~a~~vV~A~G~~S-~~r~ 170 (232)
+....++...+.+.|.+.+. + ++++++++|++++..+ +.. +.+.+ .+|. ++.|++||+|+|.+| .+++
T Consensus 175 p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~--dg~-~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~ 251 (494)
T PRK05257 175 EIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRND--DGS-WTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQ 251 (494)
T ss_pred CCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECC--CCC-EEEEEEEcCCCceEEEEcCEEEECCCcchHHHHH
Confidence 44557888899999988765 4 7999999999998754 232 44443 3453 699999999999997 5777
Q ss_pred hhcCC
Q 044609 171 WLGLS 175 (232)
Q Consensus 171 ~~~~~ 175 (232)
.+|.+
T Consensus 252 ~~Gi~ 256 (494)
T PRK05257 252 KSGIP 256 (494)
T ss_pred HcCCC
Confidence 77765
No 81
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.60 E-value=6.9e-14 Score=118.29 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=51.2
Q ss_pred eeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe---CCCc--EEEccEEEecCCCchh-hhhhhc
Q 044609 103 RSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL---GDST--IIKAKVLIGCDGVHSM-VAQWLG 173 (232)
Q Consensus 103 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~---~~g~--~~~a~~vV~A~G~~S~-~r~~~~ 173 (232)
..++...+...|.+.+. |++++.+++|+++..+++++.. +.|.. .+++ ++.||.||+|+|.||. +++.++
T Consensus 227 g~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v-~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 227 GQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRI-VGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred cEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcE-EEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence 45788899988887764 7899999999999875310333 44443 2343 6899999999999984 677665
No 82
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.59 E-value=4.7e-14 Score=115.91 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=56.9
Q ss_pred CCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe---CCC--cEEEccEEEecCCCch-hhhh
Q 044609 99 GSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL---GDS--TIIKAKVLIGCDGVHS-MVAQ 170 (232)
Q Consensus 99 ~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~---~~g--~~~~a~~vV~A~G~~S-~~r~ 170 (232)
.+....++...+.+.|.+.+. |++++++++|++++.++ +.. +.+.+ .+| .+++||+||+|+|.+| .+++
T Consensus 169 ~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~--~~~-v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~ 245 (483)
T TIGR01320 169 AAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS--DGS-WTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQ 245 (483)
T ss_pred eCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CCe-EEEEEeeccCCceEEEECCEEEECCCcchHHHHH
Confidence 445567899999999988775 89999999999998754 223 44443 334 2689999999999987 5788
Q ss_pred hhcCCC
Q 044609 171 WLGLSE 176 (232)
Q Consensus 171 ~~~~~~ 176 (232)
.+|.+.
T Consensus 246 ~~Gi~~ 251 (483)
T TIGR01320 246 KSGIPE 251 (483)
T ss_pred HcCCCc
Confidence 888763
No 83
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.58 E-value=2.8e-14 Score=119.22 Aligned_cols=173 Identities=17% Similarity=0.215 Sum_probs=96.0
Q ss_pred CcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeecccHHH-----------HHHHcCChHHHHhh
Q 044609 2 EMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPNAWL-----------ALDALGVSHKLTSV 69 (232)
Q Consensus 2 ~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~-----------~l~~~g~~~~~~~~ 69 (232)
..+++||+|||||+.|+++|+.|+++|++|+||||.... +.++++..+-..+.+ .++...++..+...
T Consensus 3 ~~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~ 82 (546)
T PRK11101 3 DSQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARH 82 (546)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchH
Confidence 445699999999999999999999999999999997543 223322221111111 11110001110000
Q ss_pred -ccCceeeEEE------------------------EcCCCce-eEEecc--C-CCCCCCCceeeeehHHHHHHHhhhCC-
Q 044609 70 -YAPAKRVFVT------------------------NLGTGAT-QELSYA--G-KSGRIGSGLRSVHRQSLLEALADELP- 119 (232)
Q Consensus 70 -~~~~~~~~~~------------------------~~~~~~~-~~~~~~--~-~~~~~~~~~~~~~~~~l~~~l~~~~~- 119 (232)
..+.....+. ..+.... ...+.- . ..+.+.+. ..++...+...+...+.
T Consensus 83 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~d-g~vdp~rl~~al~~~A~~ 161 (546)
T PRK11101 83 CVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPD-GTVDPFRLTAANMLDAKE 161 (546)
T ss_pred hhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecC-cEECHHHHHHHHHHHHHh
Confidence 0000011110 0000000 000000 0 00111222 46888888888776654
Q ss_pred -CCeEEeCceEEEEEecCCCCCccEEEEeC---CC--cEEEccEEEecCCCch-hhhhhhcCCCCc
Q 044609 120 -DDTIQFSSKIAAIDSQTLNGSSAAIINLG---DS--TIIKAKVLIGCDGVHS-MVAQWLGLSESI 178 (232)
Q Consensus 120 -~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g--~~~~a~~vV~A~G~~S-~~r~~~~~~~~~ 178 (232)
|++++++++|+++..++ +.. +.|.+. ++ .++.|+.||+|+|.|+ .+.+..+.+.+.
T Consensus 162 ~Ga~i~~~t~V~~i~~~~--~~v-~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~~~i 224 (546)
T PRK11101 162 HGAQILTYHEVTGLIREG--DTV-CGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRIRM 224 (546)
T ss_pred CCCEEEeccEEEEEEEcC--CeE-EEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCCCce
Confidence 88999999999998764 343 445442 33 3799999999999998 466666655443
No 84
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.58 E-value=4.3e-14 Score=115.96 Aligned_cols=68 Identities=21% Similarity=0.247 Sum_probs=53.4
Q ss_pred eeeehHHHHHHHhhhCC------C--CeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch-hhhhhhc
Q 044609 103 RSVHRQSLLEALADELP------D--DTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS-MVAQWLG 173 (232)
Q Consensus 103 ~~~~~~~l~~~l~~~~~------~--~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S-~~r~~~~ 173 (232)
..++...+.+.|.+.+. | ++++++++|++++..+ +.. +.|.+.+| +++||.||+|+|.|| .+.+.+|
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~--~~~-~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~G 281 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN--DSL-YKIHTNRG-EIRARFVVVSACGYSLLFAQKMG 281 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC--CCe-EEEEECCC-EEEeCEEEECcChhHHHHHHHhC
Confidence 46788888888876653 3 6789999999998764 344 77888877 599999999999998 4667776
Q ss_pred C
Q 044609 174 L 174 (232)
Q Consensus 174 ~ 174 (232)
.
T Consensus 282 i 282 (497)
T PTZ00383 282 Y 282 (497)
T ss_pred C
Confidence 5
No 85
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1e-13 Score=112.77 Aligned_cols=137 Identities=19% Similarity=0.169 Sum_probs=85.6
Q ss_pred CcccccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609 2 EMVEEDVVIIGAGIAGLATAVALRRLGIK-ALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN 80 (232)
Q Consensus 2 ~~~~~dV~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 80 (232)
.+.++||+|||||++|+++|+.|.+.|++ ++|+||++..+...+-. ..++....
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~------------------------ry~~l~~~- 59 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN------------------------RYPGLRLD- 59 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc------------------------cCCceEEC-
Confidence 34568999999999999999999999998 99999998775432100 00000000
Q ss_pred cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcE--EEccEE
Q 044609 81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTI--IKAKVL 158 (232)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~--~~a~~v 158 (232)
.......+++.+....-........+..+...+.+....-.+.++++|..+..+++ +.. |.|+++++.+ +.||.|
T Consensus 60 -~p~~~~~~~~~p~~~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~-~~~-w~V~~~~~~~~~~~a~~v 136 (443)
T COG2072 60 -SPKWLLGFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDED-TKR-WTVTTSDGGTGELTADFV 136 (443)
T ss_pred -CchheeccCCCccCCcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCC-CCe-EEEEEcCCCeeeEecCEE
Confidence 00000111111110000111112235566666666544567888888888887764 445 9999988865 559999
Q ss_pred EecCCCch
Q 044609 159 IGCDGVHS 166 (232)
Q Consensus 159 V~A~G~~S 166 (232)
|.|+|.+|
T Consensus 137 V~ATG~~~ 144 (443)
T COG2072 137 VVATGHLS 144 (443)
T ss_pred EEeecCCC
Confidence 99999976
No 86
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.55 E-value=3.8e-14 Score=115.73 Aligned_cols=151 Identities=19% Similarity=0.273 Sum_probs=84.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCc-eeeEEEEcCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPA-KRVFVTNLGT 83 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~~~ 83 (232)
.++|+|||||++|+++|..|.+.|++|+|+||++..+.. ..+.+.... +.+++.........++ ..... . ..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~---W~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~t-n-~p 82 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGL---WVYTPKSES--DPLSLDPTRSIVHSSVYESLRT-N-LP 82 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcce---eecCCCcCC--CccccCCCCcccchhhhhhhhc-c-CC
Confidence 489999999999999999999999999999999877422 122111100 0011110000000000 00000 0 00
Q ss_pred Cce---eEEeccCCCC-CCCCceeeeehHHHHHHHhhhCC--CCe--EEeCceEEEEEecCCCCCccEEEEeCCC--c--
Q 044609 84 GAT---QELSYAGKSG-RIGSGLRSVHRQSLLEALADELP--DDT--IQFSSKIAAIDSQTLNGSSAAIINLGDS--T-- 151 (232)
Q Consensus 84 ~~~---~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~--i~~~~~v~~i~~~~~~g~~~~~v~~~~g--~-- 151 (232)
... ..+++..... ............++.++|.+.+. ++. ++++++|+++...+ .. |.|++.++ .
T Consensus 83 ~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~---~~-w~V~~~~~~~~~~ 158 (461)
T PLN02172 83 RECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD---GK-WRVQSKNSGGFSK 158 (461)
T ss_pred HhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC---Ce-EEEEEEcCCCceE
Confidence 000 0011111000 00011223456788888887764 554 89999999998763 34 77776543 2
Q ss_pred EEEccEEEecCCCch
Q 044609 152 IIKAKVLIGCDGVHS 166 (232)
Q Consensus 152 ~~~a~~vV~A~G~~S 166 (232)
+..+|.||+|+|.++
T Consensus 159 ~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 159 DEIFDAVVVCNGHYT 173 (461)
T ss_pred EEEcCEEEEeccCCC
Confidence 467899999999875
No 87
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.54 E-value=5.1e-13 Score=108.72 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=52.3
Q ss_pred eeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh-hhhhhcCCCCcc
Q 044609 103 RSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM-VAQWLGLSESIN 179 (232)
Q Consensus 103 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~-~r~~~~~~~~~~ 179 (232)
..++...+.+.|.+.+. |++++++++|++++.++ +.. ..|.+.++ ++.||.||+|+|.++. +.+.++.+.+..
T Consensus 196 g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~-~~v~t~~~-~~~a~~VV~a~G~~~~~l~~~~g~~~pi~ 271 (416)
T PRK00711 196 ETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRI-TGVQTGGG-VITADAYVVALGSYSTALLKPLGVDIPVY 271 (416)
T ss_pred ccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEE-EEEEeCCc-EEeCCEEEECCCcchHHHHHHhCCCcccC
Confidence 35667788888876654 78999999999998764 332 45666554 6999999999999984 344455554443
No 88
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.54 E-value=3.3e-13 Score=110.53 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=55.5
Q ss_pred CCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEE---eCCCc--EEEccEEEecCCCch-hhh
Q 044609 99 GSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIIN---LGDST--IIKAKVLIGCDGVHS-MVA 169 (232)
Q Consensus 99 ~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~---~~~g~--~~~a~~vV~A~G~~S-~~r 169 (232)
.+....++...+.+.|.+.+ .+++++++++|++++..++ +. |.+. +.+++ +++||+||+|.|.|| .+.
T Consensus 175 ~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~--w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La 251 (497)
T PRK13339 175 IDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GG--WEVTVKDRNTGEKREQVADYVFIGAGGGAIPLL 251 (497)
T ss_pred CCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CC--EEEEEEecCCCceEEEEcCEEEECCCcchHHHH
Confidence 34456788888999888766 2689999999999987632 33 5554 34453 689999999999998 577
Q ss_pred hhhcCC
Q 044609 170 QWLGLS 175 (232)
Q Consensus 170 ~~~~~~ 175 (232)
+.+|.+
T Consensus 252 ~~~Gi~ 257 (497)
T PRK13339 252 QKSGIP 257 (497)
T ss_pred HHcCCC
Confidence 777765
No 89
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.54 E-value=6.4e-15 Score=108.24 Aligned_cols=136 Identities=21% Similarity=0.205 Sum_probs=72.8
Q ss_pred EEECCCHHHHHHHHHHHhCCCc-EEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCcee
Q 044609 9 VIIGAGIAGLATAVALRRLGIK-ALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGATQ 87 (232)
Q Consensus 9 ~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (232)
+||||||+|+++|..|.+.|++ ++||||.+.++..... .+ ....+.. .........+. ...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~---~~------~~~~~~~----~~~~~~~~~~~-----~~~ 62 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR---YY------SYTRLHS----PSFFSSDFGLP-----DFE 62 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC---H-------TTTT-BS----SSCCTGGSS-------CCC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE---eC------CCCcccc----CccccccccCC-----ccc
Confidence 6999999999999999999999 9999999876432110 00 0000000 00000000000 000
Q ss_pred EEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 88 ELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
.+.+..... ...........++.+.|.+.+. +.+++++++|+++.+++ +. |.|++.+++++.|+.||+|+|..
T Consensus 63 ~~~~~~~~~-~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~---~~-w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 63 SFSFDDSPE-WRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDG---DG-WTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HSCHHHHHH-HHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEET---TT-EEEEETTS-EEEEEEEEE---SS
T ss_pred ccccccCCC-CCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEec---cE-EEEEEEecceeeeeeEEEeeecc
Confidence 000000000 0001123556667776666553 67899999999999984 44 99999999889999999999987
Q ss_pred hh
Q 044609 166 SM 167 (232)
Q Consensus 166 S~ 167 (232)
|.
T Consensus 138 ~~ 139 (203)
T PF13738_consen 138 SH 139 (203)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 90
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.53 E-value=2.3e-13 Score=116.56 Aligned_cols=158 Identities=22% Similarity=0.200 Sum_probs=93.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC--cCcceeeeec-c------c-HHHHH-----HHcCChHHHHhhc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL--RATGAALTLS-P------N-AWLAL-----DALGVSHKLTSVY 70 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~--~~~~~~~~~~-~------~-~~~~l-----~~~g~~~~~~~~~ 70 (232)
+||+|||||++|+++|+.|+++|++|+|+|++..+ +.+++..++. + . ..+.. ....++..+.+..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~~~~ 340 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALPAAG 340 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999998643 2222211110 0 0 01110 0111122221100
Q ss_pred c----CceeeEEEEcCCCc------------------------e-eEEecc-CCCCCCCCceeeeehHHHHHHHhhhCC-
Q 044609 71 A----PAKRVFVTNLGTGA------------------------T-QELSYA-GKSGRIGSGLRSVHRQSLLEALADELP- 119 (232)
Q Consensus 71 ~----~~~~~~~~~~~~~~------------------------~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~- 119 (232)
. ...+......+... . ...+.. ...+.+.+...++++..+.+.|.+.+.
T Consensus 341 ~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a~~ 420 (662)
T PRK01747 341 VAFDHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALAGQ 420 (662)
T ss_pred CCCCCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhccc
Confidence 0 00111111101000 0 000000 011112334457888999999998875
Q ss_pred CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609 120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM 167 (232)
Q Consensus 120 ~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~ 167 (232)
+++++++++|+++...+ .. +.|.+.++..++||.||+|+|.+|.
T Consensus 421 Gv~i~~~~~V~~i~~~~---~~-~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 421 QLTIHFGHEVARLERED---DG-WQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred CcEEEeCCEeeEEEEeC---CE-EEEEECCCcEEECCEEEECCCCCcc
Confidence 68999999999998764 34 6688888877889999999999984
No 91
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.52 E-value=9e-14 Score=114.30 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=50.0
Q ss_pred CceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609 100 SGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM 167 (232)
Q Consensus 100 ~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~ 167 (232)
+....+++..+.+.|.+.+. |++++.+++|++++.. .. +.|.+.+| ++.||.||+|+|.||.
T Consensus 175 ~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~----~~-~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 175 PVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEG----QP-AVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred CCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeC----Cc-eEEEeCCc-EEECCEEEEccccccc
Confidence 34467889999999987764 8999999999999742 33 66777777 5999999999999974
No 92
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.51 E-value=1.6e-13 Score=110.43 Aligned_cols=135 Identities=23% Similarity=0.288 Sum_probs=87.4
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHH----HHHHHcCChHHHHhhccCceeeEE
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAW----LALDALGVSHKLTSVYAPAKRVFV 78 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~----~~l~~~g~~~~~~~~~~~~~~~~~ 78 (232)
++..+|+|||||+|||++|..|.+.|++++++||....+... .+.++.- ..++.+ ..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW---~y~~~~~~~~ss~Y~~l----------------~t 64 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLW---KYTENVEVVHSSVYKSL----------------RT 64 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceE---eecCcccccccchhhhh----------------hc
Confidence 456899999999999999999999999999999998874321 1111100 001111 00
Q ss_pred EEcCCCce---eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC----CCeEEeCceEEEEEecCCCCCccEEEEeCCC-
Q 044609 79 TNLGTGAT---QELSYAGKSGRIGSGLRSVHRQSLLEALADELP----DDTIQFSSKIAAIDSQTLNGSSAAIINLGDS- 150 (232)
Q Consensus 79 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g- 150 (232)
. ...+. ..++++.. ...+..++.++.++|.+.++ ...+.++++|..+....+ .. |.|.+.+.
T Consensus 65 n--~pKe~~~~~dfpf~~~-----~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~--gk-W~V~~~~~~ 134 (448)
T KOG1399|consen 65 N--LPKEMMGYSDFPFPER-----DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK--GK-WRVTTKDNG 134 (448)
T ss_pred c--CChhhhcCCCCCCccc-----CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC--Cc-eeEEEecCC
Confidence 0 00000 11222211 12234566688888888775 347999999999987642 23 88877654
Q ss_pred ---cEEEccEEEecCCCch
Q 044609 151 ---TIIKAKVLIGCDGVHS 166 (232)
Q Consensus 151 ---~~~~a~~vV~A~G~~S 166 (232)
....+|+||+|+|.+.
T Consensus 135 ~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 135 TQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred cceeEEEeeEEEEcccCcC
Confidence 3678999999999993
No 93
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.50 E-value=1.4e-13 Score=108.29 Aligned_cols=143 Identities=22% Similarity=0.320 Sum_probs=84.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEE-ecCCCCcCcceeeeeccc----HHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVL-EKSDGLRATGAALTLSPN----AWLALDALGVSHKLTSVYAPAKRVFVTNL 81 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~vi-E~~~~~~~~~~~~~~~~~----~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 81 (232)
||+|||||.||+.+|+.+||.|.+|+|+ ++.+....-++.-++... ..+.++.+|- .+ ........+.+...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg--~m-~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGG--LM-GRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT---SH-HHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhh--HH-HHHHhHhhhhhhcc
Confidence 8999999999999999999999999999 333333222222222221 1223334431 11 11111223333332
Q ss_pred CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEE
Q 044609 82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVL 158 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~v 158 (232)
...+ +... ......++|..+.+.+.+.+ +++++. ..+|+++..++ +.. ..|.+.+|..+.||.|
T Consensus 78 N~sk-------Gpav--~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~--~~v-~GV~~~~g~~~~a~~v 144 (392)
T PF01134_consen 78 NRSK-------GPAV--HALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVEN--GKV-KGVVTKDGEEIEADAV 144 (392)
T ss_dssp STTS--------GGC--TEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECT--TEE-EEEEETTSEEEEECEE
T ss_pred cccC-------CCCc--cchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecC--CeE-EEEEeCCCCEEecCEE
Confidence 1110 0011 12234788988888887765 367776 56899998875 565 8899999999999999
Q ss_pred EecCCCc
Q 044609 159 IGCDGVH 165 (232)
Q Consensus 159 V~A~G~~ 165 (232)
|+|+|.+
T Consensus 145 VlaTGtf 151 (392)
T PF01134_consen 145 VLATGTF 151 (392)
T ss_dssp EE-TTTG
T ss_pred EEecccc
Confidence 9999993
No 94
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.50 E-value=1.6e-12 Score=104.01 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=45.1
Q ss_pred ceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609 101 GLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM 167 (232)
Q Consensus 101 ~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~ 167 (232)
....++...+...|.+.+ .+++++.+++|++++. + .|.+.+|. +.||.||+|+|.+|.
T Consensus 138 ~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~----~----~v~t~~g~-i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 138 DELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET----G----TVRTSRGD-VHADQVFVCPGADFE 198 (365)
T ss_pred CCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec----C----eEEeCCCc-EEeCEEEECCCCChh
Confidence 345788888888888764 2789999999999852 2 25566665 789999999999974
No 95
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.49 E-value=2.5e-14 Score=116.30 Aligned_cols=148 Identities=20% Similarity=0.215 Sum_probs=35.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce---eeeecc-cHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA---ALTLSP-NAWLALDALGVSHKLTSVYAPAKRVFVTNLG 82 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~---~~~~~~-~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (232)
||+|||||++|+++|+.++|.|.+|+||||.+.++.... ...+.. .... ...-|+..++............. .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~~~~~~~~~--~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED-QVIGGIFREFLNRLRARGGYPQE--D 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH-HHHHHHHHHHHHST------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh-ccCCCHHHHHHHHHhhhcccccc--c
Confidence 899999999999999999999999999999988753211 111111 1111 11112233333222211000000 0
Q ss_pred CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC--CCCeEEeCceEEEEEecCCCCCccEEEEeCC--C-cEEEccE
Q 044609 83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL--PDDTIQFSSKIAAIDSQTLNGSSAAIINLGD--S-TIIKAKV 157 (232)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~--g-~~~~a~~ 157 (232)
. .. ......+++..+...|.+.+ .++++++++.|.++..++ +.. ..|.+.+ | .+++|++
T Consensus 78 ~-----~~--------~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~--~~i-~~V~~~~~~g~~~i~A~~ 141 (428)
T PF12831_consen 78 R-----YG--------WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG--GRI-TGVIVETKSGRKEIRAKV 141 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-----cc--------cccccccccccccccccccccccccccccccccccccccc--ccc-cccccccccccccccccc
Confidence 0 00 00001233333333333333 289999999999999875 344 5555543 4 4899999
Q ss_pred EEecCCCchhhhhhhcC
Q 044609 158 LIGCDGVHSMVAQWLGL 174 (232)
Q Consensus 158 vV~A~G~~S~~r~~~~~ 174 (232)
+|+|||. ..+..+.|.
T Consensus 142 ~IDaTG~-g~l~~~aG~ 157 (428)
T PF12831_consen 142 FIDATGD-GDLAALAGA 157 (428)
T ss_dssp -----------------
T ss_pred ccccccc-ccccccccc
Confidence 9999995 455555544
No 96
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.49 E-value=2.3e-12 Score=103.89 Aligned_cols=122 Identities=15% Similarity=0.008 Sum_probs=71.2
Q ss_pred CCceeeeehHHHHHHHhhhCC--C-CeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhh-hhhhc-
Q 044609 99 GSGLRSVHRQSLLEALADELP--D-DTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMV-AQWLG- 173 (232)
Q Consensus 99 ~~~~~~~~~~~l~~~l~~~~~--~-~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~-r~~~~- 173 (232)
.+....++...+.+.|.+.+. + ..+..++.+..+... +.. +.|.+.+|. +.|+.||+|+|.++.. -..++
T Consensus 147 ~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~---~~~-~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~~ 221 (387)
T COG0665 147 DPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD---GRV-VGVETDGGT-IEADKVVLAAGAWAGELAATLGE 221 (387)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec---CcE-EEEEeCCcc-EEeCEEEEcCchHHHHHHHhcCC
Confidence 444557788889998888764 5 456668889888765 123 788888888 9999999999999853 33444
Q ss_pred CCCCcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEE
Q 044609 174 LSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFL 225 (232)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 225 (232)
...+..+.......+...+...................++.|..++.+.+..
T Consensus 222 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~~~~g~ 273 (387)
T COG0665 222 LPLPLRPVRGQALTTEPPEGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGG 273 (387)
T ss_pred CcCccccccceEEEecCCCccccccccceEEEecCCceEEEEcCCCcEEEee
Confidence 3333333222222121121111100000233333334667777777655544
No 97
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.1e-12 Score=99.61 Aligned_cols=113 Identities=25% Similarity=0.342 Sum_probs=76.8
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLGIK-ALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL 81 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 81 (232)
++.|||+||||||+|+++|.+++|.+++ ++|+|+.. ++.. ... ..
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~gg~-------------------~~~----------~~---- 46 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PGGQ-------------------LTK----------TT---- 46 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cCCc-------------------ccc----------ce----
Confidence 3569999999999999999999999999 66666543 2100 000 00
Q ss_pred CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEE
Q 044609 82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLI 159 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV 159 (232)
..-+++... ..+.-..+.+.+.+++. ++++.. ..|.+++... +. +.|.+.++. ++|+.||
T Consensus 47 -----~venypg~~-------~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~---~~-F~v~t~~~~-~~ak~vI 108 (305)
T COG0492 47 -----DVENYPGFP-------GGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG---GP-FKVKTDKGT-YEAKAVI 108 (305)
T ss_pred -----eecCCCCCc-------cCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC---ce-EEEEECCCe-EEEeEEE
Confidence 001122111 12455677777777763 677766 6777777653 24 889999998 9999999
Q ss_pred ecCCCchh
Q 044609 160 GCDGVHSM 167 (232)
Q Consensus 160 ~A~G~~S~ 167 (232)
+|+|....
T Consensus 109 iAtG~~~~ 116 (305)
T COG0492 109 IATGAGAR 116 (305)
T ss_pred ECcCCccc
Confidence 99999864
No 98
>PLN02661 Putative thiazole synthesis
Probab=99.46 E-value=1.7e-12 Score=100.90 Aligned_cols=129 Identities=22% Similarity=0.301 Sum_probs=78.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCcCcce--eeee-----cccHHHHHHHcCChHHHHhhccCcee
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRL-GIKALVLEKSDGLRATGA--ALTL-----SPNAWLALDALGVSHKLTSVYAPAKR 75 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~-g~~v~viE~~~~~~~~~~--~~~~-----~~~~~~~l~~~g~~~~~~~~~~~~~~ 75 (232)
.++||+|||||++|+++|+.|++. |++|+||||...++...+ +..+ .....++|+++|+.- +
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~f---------d- 160 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPY---------D- 160 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCc---------c-
Confidence 458999999999999999999986 899999999877643211 1101 111223344443311 0
Q ss_pred eEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEe-----
Q 044609 76 VFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINL----- 147 (232)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~----- 147 (232)
...+ + ....+...+.+.|.+.+ ++++++.++.++++..++ +.. ..+..
T Consensus 161 -----------------~~dg---y-~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~--grV-aGVVvnw~~v 216 (357)
T PLN02661 161 -----------------EQEN---Y-VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--DRV-GGVVTNWALV 216 (357)
T ss_pred -----------------cCCC---e-eEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC--CEE-EEEEeecchh
Confidence 0000 0 00112234445555433 378999999999998764 443 33332
Q ss_pred -CC--C------cEEEccEEEecCCCch
Q 044609 148 -GD--S------TIIKAKVLIGCDGVHS 166 (232)
Q Consensus 148 -~~--g------~~~~a~~vV~A~G~~S 166 (232)
.+ + ..+.|+.||+|+|...
T Consensus 217 ~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 217 AQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred hhccCCCCccceeEEECCEEEEcCCCCC
Confidence 11 1 2689999999999765
No 99
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.45 E-value=2.7e-12 Score=99.80 Aligned_cols=158 Identities=23% Similarity=0.256 Sum_probs=102.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCCCcCcc-eeeeecccHHHHHHHcCChHHHHh----hccC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRL------GIKALVLEKSDGLRATG-AALTLSPNAWLALDALGVSHKLTS----VYAP 72 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~------g~~v~viE~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~----~~~~ 72 (232)
..+||+|||||||||++|+.|.+. .++|.|+||...++.+. .|..+.|.++. +| ..+.++ ...+
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~ald---EL--~P~wke~~apl~t~ 149 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALD---EL--LPDWKEDGAPLNTP 149 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhh---hh--CcchhhcCCccccc
Confidence 358999999999999999998762 47899999999886542 34455554433 22 122222 2233
Q ss_pred ceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCC-
Q 044609 73 AKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGD- 149 (232)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~- 149 (232)
.+.-.+..........++...... ....+.+.-..++++|-+.++ |++|+-+..+.++..+++ |.. ..+.+.|
T Consensus 150 vT~d~~~fLt~~~~i~vPv~~pm~--NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~ed-gsV-kGiaT~D~ 225 (621)
T KOG2415|consen 150 VTSDKFKFLTGKGRISVPVPSPMD--NHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDED-GSV-KGIATNDV 225 (621)
T ss_pred ccccceeeeccCceeecCCCcccc--cCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCC-CcE-eeEeeccc
Confidence 334344433332222222211111 334678889999999998876 889999998888888765 454 6666654
Q ss_pred -----C---------cEEEccEEEecCCCchhhhh
Q 044609 150 -----S---------TIIKAKVLIGCDGVHSMVAQ 170 (232)
Q Consensus 150 -----g---------~~~~a~~vV~A~G~~S~~r~ 170 (232)
| -.+.|+..|.|.|.+..+.+
T Consensus 226 GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lsk 260 (621)
T KOG2415|consen 226 GISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSK 260 (621)
T ss_pred cccCCCCccccccccceecceeEEEeccccchhHH
Confidence 2 25889999999999865543
No 100
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.42 E-value=3.8e-12 Score=99.09 Aligned_cols=111 Identities=28% Similarity=0.425 Sum_probs=74.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
|||+|||||++|+++|..|++.|++|+|||+.. ++ + .+... . .+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~g--g-~~~~~-------------~------------~~------- 44 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PG--G-QLTTT-------------T------------EV------- 44 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CC--c-ceeec-------------c------------cc-------
Confidence 699999999999999999999999999999875 21 1 00000 0 00
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCC
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDG 163 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G 163 (232)
..++... ..+....+.+.+.+.+. ++++++ ++|+++..++ .. +.+.+.++.++.+|.||+|+|
T Consensus 45 ---~~~~~~~-------~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~---~~-~~v~~~~~~~~~~d~liiAtG 109 (300)
T TIGR01292 45 ---ENYPGFP-------EGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSD---RP-FKVKTGDGKEYTAKAVIIATG 109 (300)
T ss_pred ---cccCCCC-------CCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecC---Ce-eEEEeCCCCEEEeCEEEECCC
Confidence 0000000 01222344445544432 788888 8999998763 44 778888888999999999999
Q ss_pred Cchh
Q 044609 164 VHSM 167 (232)
Q Consensus 164 ~~S~ 167 (232)
....
T Consensus 110 ~~~~ 113 (300)
T TIGR01292 110 ASAR 113 (300)
T ss_pred CCcc
Confidence 8653
No 101
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.39 E-value=5.4e-12 Score=101.89 Aligned_cols=157 Identities=25% Similarity=0.271 Sum_probs=85.1
Q ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC----cceeeeeccc---HHHHHHHcCChHH-HHhhccCc--eeeEE
Q 044609 9 VIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA----TGAALTLSPN---AWLALDALGVSHK-LTSVYAPA--KRVFV 78 (232)
Q Consensus 9 ~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~----~~~~~~~~~~---~~~~l~~~g~~~~-~~~~~~~~--~~~~~ 78 (232)
+|||||++|+++|+.|+++|++|+|+||.+.++. ++.+.....+ ....++..+-... +......+ .....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999887632 1212111111 1111122211100 00000000 00000
Q ss_pred EEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEcc
Q 044609 79 TNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAK 156 (232)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~ 156 (232)
+....+...... ..+...+ ..-....+.+.|.+.+. +++++++++|+++..++ .. +.+.+ ++.++.||
T Consensus 81 ~~~~~Gv~~~~~---~~g~~~p--~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~---~~-~~v~~-~~~~i~ad 150 (400)
T TIGR00275 81 FFESLGLELKVE---EDGRVFP--CSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD---NG-FGVET-SGGEYEAD 150 (400)
T ss_pred HHHHcCCeeEEe---cCCEeEC--CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC---Ce-EEEEE-CCcEEEcC
Confidence 000000000000 0000000 01123556666666553 78999999999997653 33 66666 45679999
Q ss_pred EEEecCCCch-----------hhhhhhcCC
Q 044609 157 VLIGCDGVHS-----------MVAQWLGLS 175 (232)
Q Consensus 157 ~vV~A~G~~S-----------~~r~~~~~~ 175 (232)
.||+|+|.+| .+.+.+|..
T Consensus 151 ~VIlAtG~~s~p~~gs~G~g~~la~~lG~~ 180 (400)
T TIGR00275 151 KVILATGGLSYPQLGSTGDGYEIAESLGHT 180 (400)
T ss_pred EEEECCCCcccCCCCCCcHHHHHHHHCCCC
Confidence 9999999977 456667765
No 102
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.38 E-value=5.2e-12 Score=104.64 Aligned_cols=145 Identities=19% Similarity=0.184 Sum_probs=84.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc-Ccceeeee---cc-cHHHHHHHcCC-hHHHHhhccCceeeEEE
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR-ATGAALTL---SP-NAWLALDALGV-SHKLTSVYAPAKRVFVT 79 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~-~~~~~~~~---~~-~~~~~l~~~g~-~~~~~~~~~~~~~~~~~ 79 (232)
|||+|||||++|+.+|..+++.|.+|+++|+..... ..++.-.. .. ...+.++.+|- ...+ .....+.+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~----~d~~~i~~r 76 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKA----ADKAGLQFR 76 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHH----HHhhceehe
Confidence 699999999999999999999999999999974321 11110000 00 01222233321 1110 000111111
Q ss_pred EcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEcc
Q 044609 80 NLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAK 156 (232)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~ 156 (232)
...... .. .. ......+++..+.+.+.+.+. +++++.+ .|+++..+++ +.. ..|.+.+|..+.|+
T Consensus 77 ~ln~sk------gp-AV--~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~-g~V-~GV~t~~G~~I~Ad 144 (617)
T TIGR00136 77 VLNSSK------GP-AV--RATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDN-DEI-KGVVTQDGLKFRAK 144 (617)
T ss_pred ecccCC------CC-cc--cccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecC-CcE-EEEEECCCCEEECC
Confidence 111100 00 00 111236788888887766553 5677654 6777765422 454 77888899899999
Q ss_pred EEEecCCCch
Q 044609 157 VLIGCDGVHS 166 (232)
Q Consensus 157 ~vV~A~G~~S 166 (232)
.||+|+|.++
T Consensus 145 ~VILATGtfL 154 (617)
T TIGR00136 145 AVIITTGTFL 154 (617)
T ss_pred EEEEccCccc
Confidence 9999999995
No 103
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.38 E-value=4.1e-12 Score=104.82 Aligned_cols=36 Identities=39% Similarity=0.544 Sum_probs=33.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
.++||+|||+|++|+++|+.++++|.+|+||||.+.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 568999999999999999999999999999999874
No 104
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.38 E-value=1.2e-12 Score=108.38 Aligned_cols=138 Identities=18% Similarity=0.234 Sum_probs=80.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||||++||++|..|.+.|++++++||.+..+...+- ..+. .-| .....+.... . .+..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~---~~~~-----~~g-------~~~~y~sl~~-n-~sk~ 64 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY---TENP-----EDG-------RSSVYDSLHT-N-TSKE 64 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH---STTC-----CCS-------EGGGSTT-B--S-S-GG
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee---CCcC-----CCC-------ccccccceEE-e-eCch
Confidence 47999999999999999999999999999999987533210 0000 000 0000000000 0 0000
Q ss_pred e---eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--C--CeEEeCceEEEEEecCCCC-CccEEEEeCC-Cc--EEE
Q 044609 86 T---QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--D--DTIQFSSKIAAIDSQTLNG-SSAAIINLGD-ST--IIK 154 (232)
Q Consensus 86 ~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~--~~i~~~~~v~~i~~~~~~g-~~~~~v~~~~-g~--~~~ 154 (232)
. ..++++. ......++.++.++|.+.++ + -.++++++|+++++.++.. ...|.|++.+ |+ +..
T Consensus 65 ~~~fsdfp~p~------~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~ 138 (531)
T PF00743_consen 65 MMAFSDFPFPE------DYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEE 138 (531)
T ss_dssp GSCCTTS-HCC------CCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEE
T ss_pred HhcCCCcCCCC------CCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEE
Confidence 0 0111111 11225788899999988775 3 4799999999998864211 1138888764 43 456
Q ss_pred ccEEEecCCCch
Q 044609 155 AKVLIGCDGVHS 166 (232)
Q Consensus 155 a~~vV~A~G~~S 166 (232)
+|.||+|+|.++
T Consensus 139 fD~VvvatG~~~ 150 (531)
T PF00743_consen 139 FDAVVVATGHFS 150 (531)
T ss_dssp ECEEEEEE-SSS
T ss_pred eCeEEEcCCCcC
Confidence 899999999987
No 105
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.37 E-value=4.8e-12 Score=103.07 Aligned_cols=59 Identities=25% Similarity=0.321 Sum_probs=40.7
Q ss_pred ehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC---CCc--EEEccEEEecCCCchh
Q 044609 106 HRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG---DST--IIKAKVLIGCDGVHSM 167 (232)
Q Consensus 106 ~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g~--~~~a~~vV~A~G~~S~ 167 (232)
.-..+.+.|.+.++ +++++++++++++..++ +.. ..|... +|+ ++.|+.||+|+|.++.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~--g~V-~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITED--GRV-TGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEET--TEE-EEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeC--Cce-eEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 34567777776654 79999999999999975 444 444443 454 6889999999999985
No 106
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.37 E-value=1.4e-11 Score=103.95 Aligned_cols=41 Identities=41% Similarity=0.669 Sum_probs=37.7
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCC---CcEEEEecCCCCc
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLG---IKALVLEKSDGLR 41 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g---~~v~viE~~~~~~ 41 (232)
|++.++||+|||+|.||+++|+.+++.| .+|+|+||....+
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~ 44 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMR 44 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCC
Confidence 7888899999999999999999999998 8999999987653
No 107
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.36 E-value=1.5e-11 Score=103.75 Aligned_cols=38 Identities=39% Similarity=0.747 Sum_probs=33.6
Q ss_pred cccccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCC
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGL 40 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~ 40 (232)
|.++||+|||||.||+++|+.+++. |.+|+|+||....
T Consensus 1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~ 40 (575)
T PRK05945 1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPI 40 (575)
T ss_pred CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCC
Confidence 3568999999999999999999987 4899999998654
No 108
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.36 E-value=1.2e-11 Score=103.98 Aligned_cols=40 Identities=40% Similarity=0.569 Sum_probs=37.1
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
|+++++||+|||+|.||+++|+.+++.|.+|+|+||....
T Consensus 1 ~~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~ 40 (566)
T PRK06452 1 MEKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPT 40 (566)
T ss_pred CCcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 7778899999999999999999999999999999998654
No 109
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.36 E-value=1.8e-11 Score=102.46 Aligned_cols=37 Identities=43% Similarity=0.646 Sum_probs=34.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.++||+|||+|.||+++|+.+++.|.+|+|+||....
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 4689999999999999999999999999999998765
No 110
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.35 E-value=3.3e-11 Score=100.18 Aligned_cols=38 Identities=34% Similarity=0.547 Sum_probs=34.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
.++||+|||+|.+|+++|+.+++.|.+|+||||.+..+
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~G 97 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAG 97 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 35899999999999999999999999999999988653
No 111
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.35 E-value=1.5e-11 Score=100.84 Aligned_cols=34 Identities=38% Similarity=0.730 Sum_probs=32.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLG-IKALVLEKSDGL 40 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~~ 40 (232)
||+|||+|.+|+++|+.++++| .+|+||||.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence 8999999999999999999999 999999998765
No 112
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.35 E-value=1.8e-11 Score=102.04 Aligned_cols=110 Identities=24% Similarity=0.410 Sum_probs=76.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (232)
.|||+||||||+|+++|..|++.|++|+|+++. . .+.- . ...+ +.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~--GG~~--~--------~~~~--------------~~------- 255 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--F--GGQV--L--------DTMG--------------IE------- 255 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--C--CCee--e--------ccCc--------------cc-------
Confidence 489999999999999999999999999999753 2 1100 0 0000 00
Q ss_pred ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609 85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD 162 (232)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~ 162 (232)
++.. .......++.+.|.+.+. +++++.+++|.++...+ .. +.|.+.+|.++.+|.||+|+
T Consensus 256 -----~~~~--------~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~---~~-~~V~~~~g~~i~a~~vViAt 318 (517)
T PRK15317 256 -----NFIS--------VPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAA---GL-IEVELANGAVLKAKTVILAT 318 (517)
T ss_pred -----ccCC--------CCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC---Ce-EEEEECCCCEEEcCEEEECC
Confidence 0000 001233455555555443 78999999999998763 33 77788888889999999999
Q ss_pred CCch
Q 044609 163 GVHS 166 (232)
Q Consensus 163 G~~S 166 (232)
|..+
T Consensus 319 G~~~ 322 (517)
T PRK15317 319 GARW 322 (517)
T ss_pred CCCc
Confidence 9965
No 113
>PRK07121 hypothetical protein; Validated
Probab=99.35 E-value=3e-11 Score=100.28 Aligned_cols=37 Identities=41% Similarity=0.647 Sum_probs=34.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.++||+|||+|.+|+++|+.++++|.+|+||||....
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~ 55 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA 55 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3589999999999999999999999999999998765
No 114
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.33 E-value=2.8e-11 Score=102.11 Aligned_cols=34 Identities=44% Similarity=0.667 Sum_probs=32.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
||+|||+|++|+++|+.+++.|.+|+||||....
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~ 34 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPT 34 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence 8999999999999999999999999999998754
No 115
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.33 E-value=1e-11 Score=101.16 Aligned_cols=38 Identities=39% Similarity=0.624 Sum_probs=33.8
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
|+ +++||+|||+|.||+++|+.++ .|.+|+||||.+..
T Consensus 1 m~-~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~ 38 (433)
T PRK06175 1 MN-LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLN 38 (433)
T ss_pred CC-ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCC
Confidence 55 6789999999999999999975 79999999998765
No 116
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.33 E-value=3.1e-11 Score=102.57 Aligned_cols=37 Identities=32% Similarity=0.517 Sum_probs=33.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
+++||+|||+|.||+++|+.+++.|.+|+|+||...+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 4589999999999999999999999999999986554
No 117
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.32 E-value=5.3e-11 Score=97.52 Aligned_cols=92 Identities=12% Similarity=0.124 Sum_probs=75.0
Q ss_pred CCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch-hhhhhhcCC
Q 044609 99 GSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS-MVAQWLGLS 175 (232)
Q Consensus 99 ~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S-~~r~~~~~~ 175 (232)
.+.-..+++..+.++|+..+. |+.|.+++.|+++.-.. +.. +.|+++.|. ++|..+|.|+|.|. .+-++.++.
T Consensus 178 ~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~--~~~-~gVeT~~G~-iet~~~VNaaGvWAr~Vg~m~gvk 253 (856)
T KOG2844|consen 178 SPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVET--DKF-GGVETPHGS-IETECVVNAAGVWAREVGAMAGVK 253 (856)
T ss_pred cCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeec--CCc-cceeccCcc-eecceEEechhHHHHHhhhhcCCc
Confidence 455567899999999998775 88999999999998765 344 789999997 99999999999996 456666888
Q ss_pred CCcccceeEEEEeeecCCC
Q 044609 176 ESINSGRSSVRGLAVFPHG 194 (232)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~ 194 (232)
.|-.+..++|..+..++.-
T Consensus 254 vPL~p~~H~YvvT~~IeGi 272 (856)
T KOG2844|consen 254 VPLVPMHHAYVVTSRIEGV 272 (856)
T ss_pred ccceeeeeeEEEecccCCc
Confidence 8888888888877666643
No 118
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=5.5e-11 Score=100.43 Aligned_cols=39 Identities=36% Similarity=0.495 Sum_probs=35.3
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
|++.++||+|||+|.||+++|+.+++.|.+|+||||...
T Consensus 8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~ 46 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 455668999999999999999999999999999999754
No 119
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.31 E-value=4.4e-11 Score=101.58 Aligned_cols=40 Identities=43% Similarity=0.450 Sum_probs=36.2
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
|+++++||+|||+|.||+++|+.+++.|.+|+||||....
T Consensus 4 ~~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 4 VERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred ccceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 4556789999999999999999999999999999998654
No 120
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.31 E-value=3.2e-11 Score=101.32 Aligned_cols=113 Identities=22% Similarity=0.398 Sum_probs=72.9
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN 80 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 80 (232)
|+ +.|||+||||||+|+++|..|++.|++|+|||+.. .+ |. +....
T Consensus 1 m~-~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~G--G~-~~~~~----------------------------- 46 (555)
T TIGR03143 1 ME-EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FG--GQ-ITITS----------------------------- 46 (555)
T ss_pred CC-CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CC--ce-EEecc-----------------------------
Confidence 54 45999999999999999999999999999999853 21 10 00000
Q ss_pred cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEE
Q 044609 81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVL 158 (232)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~v 158 (232)
. ...++. ........+.+.+.+.+. +++++ +++|+++..+ +.. +.|.+.++ .+.++.|
T Consensus 47 --~----i~~~pg--------~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~---~~~-~~V~~~~g-~~~a~~l 106 (555)
T TIGR03143 47 --E----VVNYPG--------ILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFD---GDI-KTIKTARG-DYKTLAV 106 (555)
T ss_pred --c----cccCCC--------CcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEec---CCE-EEEEecCC-EEEEeEE
Confidence 0 000010 001223445555554432 67764 6788888765 343 56666665 5899999
Q ss_pred EecCCCchh
Q 044609 159 IGCDGVHSM 167 (232)
Q Consensus 159 V~A~G~~S~ 167 (232)
|+|+|.++.
T Consensus 107 VlATGa~p~ 115 (555)
T TIGR03143 107 LIATGASPR 115 (555)
T ss_pred EECCCCccC
Confidence 999999764
No 121
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.30 E-value=4.7e-11 Score=100.65 Aligned_cols=38 Identities=34% Similarity=0.483 Sum_probs=33.9
Q ss_pred cccccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCC
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGL 40 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~ 40 (232)
+.++||+|||+|.||+++|+.+++. |.+|+|+||....
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~ 41 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM 41 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 5678999999999999999999986 5899999998654
No 122
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.30 E-value=3.3e-11 Score=102.68 Aligned_cols=41 Identities=37% Similarity=0.638 Sum_probs=38.0
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
|.+.++||+|||+|.+|+++|+.+++.|.+|+||||.+..+
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 78888999999999999999999999999999999987653
No 123
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.30 E-value=3.6e-11 Score=99.59 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=42.3
Q ss_pred HHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCC-C--cEEEccEEEecCCCchhhh
Q 044609 108 QSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGD-S--TIIKAKVLIGCDGVHSMVA 169 (232)
Q Consensus 108 ~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-g--~~~~a~~vV~A~G~~S~~r 169 (232)
..+.+.|.+.+ +++++++++.|+++..++ +.. ..+...+ + ..+.|+.||+|+|.+|.+.
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~--g~v-~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~ 192 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIET--GRV-VGVWVWNRETVETCHADAVVLATGGAGKLY 192 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC--CEE-EEEEEEECCcEEEEEcCEEEECCCcccCCC
Confidence 45667776654 378999999999998754 443 4343332 3 3689999999999999753
No 124
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.30 E-value=4.8e-11 Score=99.47 Aligned_cols=110 Identities=19% Similarity=0.325 Sum_probs=74.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (232)
.|||+||||||+|+++|..|++.|++|+|+|.. ++ |. . .... .+.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~G--G~--~--------~~~~--------------~~~------- 256 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IG--GQ--V--------KDTV--------------GIE------- 256 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CC--Cc--c--------ccCc--------------Ccc-------
Confidence 489999999999999999999999999999742 11 10 0 0000 000
Q ss_pred ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609 85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD 162 (232)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~ 162 (232)
.+... . ......+.+.+.+.+. +++++.+++|.++..++ .. +.+.+.+|.++.+|.||+|+
T Consensus 257 -----~~~~~----~----~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~---~~-~~v~~~~g~~i~~d~lIlAt 319 (515)
T TIGR03140 257 -----NLISV----P----YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETED---GL-IVVTLESGEVLKAKSVIVAT 319 (515)
T ss_pred -----ccccc----C----CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecC---Ce-EEEEECCCCEEEeCEEEECC
Confidence 00000 0 0123344444444332 78999999999998653 33 77778888889999999999
Q ss_pred CCch
Q 044609 163 GVHS 166 (232)
Q Consensus 163 G~~S 166 (232)
|...
T Consensus 320 Ga~~ 323 (515)
T TIGR03140 320 GARW 323 (515)
T ss_pred CCCc
Confidence 9864
No 125
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.29 E-value=6.1e-11 Score=94.14 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=50.8
Q ss_pred eeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCC---C--cEEEccEEEecCCCch-hhhhhhc
Q 044609 103 RSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGD---S--TIIKAKVLIGCDGVHS-MVAQWLG 173 (232)
Q Consensus 103 ~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~---g--~~~~a~~vV~A~G~~S-~~r~~~~ 173 (232)
.-++-..|.+.|.+.+ ++++++++++|+++++.++ +. |.|...| | .+++|++|++..|.+| .+.+..|
T Consensus 176 TDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~--W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksg 252 (488)
T PF06039_consen 176 TDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD-GR--WEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSG 252 (488)
T ss_pred ccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCC-CC--EEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcC
Confidence 3455566777776655 3789999999999999764 43 6666532 2 4899999999888888 4566666
Q ss_pred CC
Q 044609 174 LS 175 (232)
Q Consensus 174 ~~ 175 (232)
++
T Consensus 253 i~ 254 (488)
T PF06039_consen 253 IP 254 (488)
T ss_pred Ch
Confidence 54
No 126
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.28 E-value=1e-10 Score=98.50 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=83.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcc----eeee--ec-ccHHH-HHHHc---C--C------
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATG----AALT--LS-PNAWL-ALDAL---G--V------ 62 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~----~~~~--~~-~~~~~-~l~~~---g--~------ 62 (232)
.++||+|||+|+||+++|+.+++. |.+|+|+||....+... .++. .. ..+.+ .++.. | +
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv 81 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV 81 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence 468999999999999999999986 58999999987653221 1111 10 01111 11110 0 1
Q ss_pred ----------hHHHHhhccCceeeEEEEcCCCceeEEeccCCCCCCCCceeee---ehHHHHHHHhhhC---CCCeEEeC
Q 044609 63 ----------SHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSV---HRQSLLEALADEL---PDDTIQFS 126 (232)
Q Consensus 63 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~---~~~~i~~~ 126 (232)
.+.+.+.+.+ +....++......+... . ....... .-..+.+.|.+.+ ++++++.+
T Consensus 82 ~~l~~~s~~~i~~L~~~Gv~-----f~~~~~g~~~~~~~gg~-~--~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~ 153 (580)
T TIGR01176 82 EYFVAEAPKEMVQLEHWGCP-----WSRKPDGRVNVRRFGGM-K--KERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDE 153 (580)
T ss_pred HHHHHHhHHHHHHHHHcCCc-----cEecCCCceeeeccCCc-c--CCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeC
Confidence 0111122222 21111221111011100 0 0000000 1245666666544 36899999
Q ss_pred ceEEEEEecCCCCCccEEE---EeCCCc--EEEccEEEecCCCchhh
Q 044609 127 SKIAAIDSQTLNGSSAAII---NLGDST--IIKAKVLIGCDGVHSMV 168 (232)
Q Consensus 127 ~~v~~i~~~~~~g~~~~~v---~~~~g~--~~~a~~vV~A~G~~S~~ 168 (232)
+.++++..++ +.. ..+ ...+|. .+.|+.||+|||.++.+
T Consensus 154 ~~v~~Li~~~--g~v-~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 154 WFVTDLLVDD--GRV-CGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred eEEEEEEeeC--CEE-EEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 9999998764 443 333 334664 68899999999999864
No 127
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.28 E-value=1.2e-10 Score=98.61 Aligned_cols=37 Identities=32% Similarity=0.470 Sum_probs=33.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.++||+|||+|.||+++|+.+++.|.+|+|+||....
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~ 47 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPT 47 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 4589999999999999999999999999999998653
No 128
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.28 E-value=1.3e-11 Score=90.79 Aligned_cols=139 Identities=24% Similarity=0.267 Sum_probs=76.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc-------ce-----eeeecccHHHHHHHcCChHHHHhhccCce
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT-------GA-----ALTLSPNAWLALDALGVSHKLTSVYAPAK 74 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~-------~~-----~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 74 (232)
+|+|||+|++|+++|+.|...|+.|+|+||+...+.+ +. ...+.+.....++.. +.+.+.+.. +
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~V---e~~~~~glV-~ 78 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAV---EALRDDGLV-D 78 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHH---HHHHhCCce-e
Confidence 7999999999999999999999999999998765321 11 111111111111111 111111110 0
Q ss_pred ee--EEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCc-
Q 044609 75 RV--FVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDST- 151 (232)
Q Consensus 75 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~- 151 (232)
.+ ..+...... ....... .+.......+.+.+.|.. ..+|.++++|+.+...+ +. |++++++|.
T Consensus 79 ~W~~~~~~~~~~~-----~~~~~d~-~pyvg~pgmsalak~LAt---dL~V~~~~rVt~v~~~~---~~-W~l~~~~g~~ 145 (331)
T COG3380 79 VWTPAVWTFTGDG-----SPPRGDE-DPYVGEPGMSALAKFLAT---DLTVVLETRVTEVARTD---ND-WTLHTDDGTR 145 (331)
T ss_pred eccccccccccCC-----CCCCCCC-CccccCcchHHHHHHHhc---cchhhhhhhhhhheecC---Ce-eEEEecCCCc
Confidence 00 000000000 0011000 111112234556665554 56899999999998874 44 999997764
Q ss_pred EEEccEEEecC
Q 044609 152 IIKAKVLIGCD 162 (232)
Q Consensus 152 ~~~a~~vV~A~ 162 (232)
...+|.||+|-
T Consensus 146 ~~~~d~vvla~ 156 (331)
T COG3380 146 HTQFDDVVLAI 156 (331)
T ss_pred ccccceEEEec
Confidence 67888888874
No 129
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.28 E-value=6.3e-11 Score=97.56 Aligned_cols=34 Identities=29% Similarity=0.529 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
+||+|||+|++|+++|+.+++.|.+|+|+||...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5999999999999999999999999999999854
No 130
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.28 E-value=5.6e-11 Score=99.82 Aligned_cols=41 Identities=34% Similarity=0.588 Sum_probs=37.2
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
|.+.++||+|||+|++|+++|+.+++.|++|+||||.+..+
T Consensus 3 ~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~g 43 (557)
T PRK07843 3 MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYG 43 (557)
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 55677999999999999999999999999999999987653
No 131
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.27 E-value=9.2e-11 Score=99.42 Aligned_cols=37 Identities=38% Similarity=0.451 Sum_probs=34.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.++||+|||+|.||+++|+.+++.|.+|+|+||....
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~ 64 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPT 64 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCC
Confidence 4589999999999999999999999999999998764
No 132
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.26 E-value=2.5e-11 Score=102.68 Aligned_cols=36 Identities=33% Similarity=0.624 Sum_probs=33.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~ 40 (232)
++||+|||+|.||+++|+.+++. |.+|+||||....
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 58999999999999999999998 9999999998754
No 133
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.26 E-value=2.4e-11 Score=101.99 Aligned_cols=37 Identities=38% Similarity=0.777 Sum_probs=34.9
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
|+ .++||+|||+|.+|+++|+.+++.|.+|+||||.+
T Consensus 1 ~~-~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 1 MA-MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CC-ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 55 67999999999999999999999999999999998
No 134
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.25 E-value=1.8e-11 Score=100.94 Aligned_cols=41 Identities=34% Similarity=0.571 Sum_probs=37.8
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
|.|.+|||+||||||+|+++|+.|++.|++|+||||.+..+
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~G 41 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVG 41 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccc
Confidence 78888999999999999999999999999999999976553
No 135
>PLN02568 polyamine oxidase
Probab=99.25 E-value=3.5e-10 Score=94.28 Aligned_cols=54 Identities=30% Similarity=0.403 Sum_probs=45.0
Q ss_pred hHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609 107 RQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV 164 (232)
Q Consensus 107 ~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~ 164 (232)
...|.+.|.+.+++..|+++++|++|...+ .. +.|.+.+|+++.||.||.|.=.
T Consensus 241 ~~~Li~~La~~L~~~~I~ln~~V~~I~~~~---~~-v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 241 YLSVIEALASVLPPGTIQLGRKVTRIEWQD---EP-VKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHHHHhhCCCCEEEeCCeEEEEEEeC---Ce-EEEEEcCCCEEEcCEEEEcCCH
Confidence 356888998888766899999999999874 44 8888999988999999998743
No 136
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.24 E-value=1.8e-10 Score=97.71 Aligned_cols=37 Identities=35% Similarity=0.478 Sum_probs=34.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
++||+|||+|.||+++|+.+++.|.+|+|+||....+
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~ 86 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTR 86 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCC
Confidence 4799999999999999999999999999999987543
No 137
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.24 E-value=2.1e-10 Score=96.78 Aligned_cols=37 Identities=35% Similarity=0.423 Sum_probs=33.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.++||+|||+|.||+++|+.+++.|.+|+|+||....
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~ 42 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT 42 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 3479999999999999999999999999999998654
No 138
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.24 E-value=2.2e-10 Score=96.74 Aligned_cols=39 Identities=36% Similarity=0.398 Sum_probs=34.2
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
|...++||+|||+|.+|+++|+.+++. .+|+|+||....
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~ 39 (583)
T PRK08205 1 MQQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPT 39 (583)
T ss_pred CcceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCC
Confidence 444678999999999999999999986 999999998654
No 139
>PRK08275 putative oxidoreductase; Provisional
Probab=99.24 E-value=2.4e-10 Score=96.14 Aligned_cols=37 Identities=35% Similarity=0.619 Sum_probs=33.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~ 40 (232)
.++||+|||+|.||+++|+.+++. |.+|+|+||.+..
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 458999999999999999999986 7899999998764
No 140
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.23 E-value=1.4e-10 Score=96.43 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=82.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcc----eeeee--cc-cHHH-HHHHc-----CC--------
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATG----AALTL--SP-NAWL-ALDAL-----GV-------- 62 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~----~~~~~--~~-~~~~-~l~~~-----g~-------- 62 (232)
.++||+|||+|.||+++|+.+++ |.+|+|+||.+..+... .++.. .+ .+.+ .++.. ++
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 80 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY 80 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence 46899999999999999999976 89999999987643221 11211 11 1111 11111 00
Q ss_pred --------hHHHHhhccCceeeEEEEcCCCceeEEeccCCCCCCCCcee----eeehHHHHHHHhhhCC-CCeEEeCceE
Q 044609 63 --------SHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLR----SVHRQSLLEALADELP-DDTIQFSSKI 129 (232)
Q Consensus 63 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~-~~~i~~~~~v 129 (232)
.+.+.+.+.+++ ....+.. .......+. ..... ...-..+.+.|.+.+. +++++.++.+
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~-----~~~~g~~-~~~~~gg~~--~~r~~~~~gd~~g~~i~~~L~~~~~~gV~i~~~~~v 152 (510)
T PRK08071 81 LVEEGPKEIQELIENGMPFD-----GDETGPL-HLGKEGAHR--KRRILHAGGDATGKNLLEHLLQELVPHVTVVEQEMV 152 (510)
T ss_pred HHHHHHHHHHHHHHcCCccc-----cCCCCce-eeccCcCcc--CCeEEecCCCCcHHHHHHHHHHHHhcCCEEEECeEh
Confidence 011122222221 0011110 000000000 00000 0112456777766554 8999999999
Q ss_pred EEEEecCCCCCccEEEEe--CCCc--EEEccEEEecCCCchh
Q 044609 130 AAIDSQTLNGSSAAIINL--GDST--IIKAKVLIGCDGVHSM 167 (232)
Q Consensus 130 ~~i~~~~~~g~~~~~v~~--~~g~--~~~a~~vV~A~G~~S~ 167 (232)
+++..++ +.. ..+.. .+++ .+.|+.||+|+|.++.
T Consensus 153 ~~Li~~~--g~v-~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 153 IDLIIEN--GRC-IGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred hheeecC--CEE-EEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 9997654 443 43433 2343 6889999999999875
No 141
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=3e-10 Score=95.37 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=32.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
.++||+|||+|.||+++|+.+ +.|.+|+|+||.+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 458999999999999999999 89999999999764
No 142
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.22 E-value=1.4e-10 Score=96.30 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=51.8
Q ss_pred HHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhhhhhc
Q 044609 108 QSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLG 173 (232)
Q Consensus 108 ~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r~~~~ 173 (232)
..+.+.|.+.++ |++++++++|++|..++ +.. ..|.+.+|+++.||.||.|.|.+..++++++
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~--~~~-~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~ 293 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILEN--GKA-VGVKLADGEKIYAKRIVSNATRWDTFGKLLK 293 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecC--CcE-EEEEeCCCCEEEcCEEEECCChHHHHHHhCC
Confidence 467777777664 79999999999998764 454 7788889988999999999999988877764
No 143
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.21 E-value=1.9e-11 Score=97.82 Aligned_cols=58 Identities=26% Similarity=0.310 Sum_probs=46.7
Q ss_pred CcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeecccHHHHHHH
Q 044609 2 EMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPNAWLALDA 59 (232)
Q Consensus 2 ~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~ 59 (232)
++.+|||+|||||..|.-||.-.+.+|+++.++|++++. +.++++..+.+.+.+.|++
T Consensus 64 ~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLek 122 (680)
T KOG0042|consen 64 STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEK 122 (680)
T ss_pred cCCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHH
Confidence 345699999999999999999999999999999999876 4455666666666665543
No 144
>PRK10262 thioredoxin reductase; Provisional
Probab=99.18 E-value=6.5e-10 Score=87.47 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=32.3
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
+..+||+||||||+|+++|..|+++|+++++||+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 35699999999999999999999999999999964
No 145
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.18 E-value=3.8e-10 Score=95.36 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=33.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.+.||+|||+|.||+++|+.+++.|.+|+||||.+..
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~ 38 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK 38 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 3569999999999999999999999999999998754
No 146
>PLN02815 L-aspartate oxidase
Probab=99.17 E-value=4.4e-10 Score=94.66 Aligned_cols=37 Identities=30% Similarity=0.494 Sum_probs=33.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
.++||+|||+|.||+++|+.+++.| +|+|+||....+
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~g 64 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHE 64 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCC
Confidence 4589999999999999999999999 999999988653
No 147
>PRK14694 putative mercuric reductase; Provisional
Probab=99.17 E-value=2.3e-10 Score=94.48 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=34.8
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
|..++|||+||||||+|+++|..|++.|.+|+|||+..
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 45577999999999999999999999999999999863
No 148
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.16 E-value=6.3e-10 Score=78.10 Aligned_cols=135 Identities=21% Similarity=0.201 Sum_probs=73.2
Q ss_pred EEECCCHHHHHHHHHHHhC-----CCcEEEEecCCCCcCcceeeeeccc-HHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609 9 VIIGAGIAGLATAVALRRL-----GIKALVLEKSDGLRATGAALTLSPN-AWLALDALGVSHKLTSVYAPAKRVFVTNLG 82 (232)
Q Consensus 9 ~IvG~G~~G~~~A~~L~~~-----g~~v~viE~~~~~~~~~~~~~~~~~-~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (232)
+|||+|++|++++..|.++ ..+|+|||+.+. ++|..+.+. .... .++... ..+......
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~----G~G~~~~~~~~~~~--llN~~a---------~~~s~~~~~ 65 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF----GAGGAYRPDQPPSH--LLNTPA---------DQMSLFPDD 65 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc----cccccCCCCCChHH--hhcccc---------ccccccccc
Confidence 5999999999999999987 468999999543 223232222 0000 011100 011110000
Q ss_pred C-CceeEEecc-C---CCCCCCCceeeeehHHHHHHHhhh-------CC-CCeEE-eCceEEEEEecCCCCCccEEEEeC
Q 044609 83 T-GATQELSYA-G---KSGRIGSGLRSVHRQSLLEALADE-------LP-DDTIQ-FSSKIAAIDSQTLNGSSAAIINLG 148 (232)
Q Consensus 83 ~-~~~~~~~~~-~---~~~~~~~~~~~~~~~~l~~~l~~~-------~~-~~~i~-~~~~v~~i~~~~~~g~~~~~v~~~ 148 (232)
. .....|--. . ... .....+..|..+-++|.+. ++ ++++. ...+|+++...+ .. +.+.+.
T Consensus 66 ~~~~f~~Wl~~~~~~~~~~--~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~---~~-~~v~~~ 139 (156)
T PF13454_consen 66 PGDDFVDWLRANGADEAEE--IDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD---DG-YRVVTA 139 (156)
T ss_pred CCCCHHHHHHhcCcccccc--cccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC---Cc-EEEEEC
Confidence 0 000000000 0 000 1112245565544444432 22 44443 366999998874 44 778889
Q ss_pred CCcEEEccEEEecCCC
Q 044609 149 DSTIIKAKVLIGCDGV 164 (232)
Q Consensus 149 ~g~~~~a~~vV~A~G~ 164 (232)
+|..+.+|.||+|+|.
T Consensus 140 ~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 140 DGQSIRADAVVLATGH 155 (156)
T ss_pred CCCEEEeCEEEECCCC
Confidence 9999999999999996
No 149
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.16 E-value=2.8e-10 Score=93.34 Aligned_cols=36 Identities=36% Similarity=0.519 Sum_probs=33.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
++|||+||||||+|+++|+.|+++|++|+|||+.+.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~ 37 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA 37 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence 469999999999999999999999999999999753
No 150
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.16 E-value=5.9e-10 Score=93.36 Aligned_cols=36 Identities=39% Similarity=0.460 Sum_probs=32.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.++||+|||+|.||+++|+.+++. .+|+|+||....
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~ 42 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS 42 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence 348999999999999999999986 899999998754
No 151
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.15 E-value=2.4e-10 Score=94.37 Aligned_cols=37 Identities=32% Similarity=0.612 Sum_probs=34.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.+|||+||||||+|+.+|..|++.|++|+|||+.+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~ 39 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTL 39 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence 4699999999999999999999999999999987544
No 152
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.15 E-value=5.8e-10 Score=93.49 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=32.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
.++||+|||+|.||+++|+.++ .|.+|+||||.+..+
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~g 44 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKT 44 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCC
Confidence 4689999999999999999986 599999999987643
No 153
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.15 E-value=1.1e-08 Score=83.25 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=37.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA 45 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~ 45 (232)
.+|||+|||+|.+|+++|..|++.|.+|+++|+++..+...+
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 469999999999999999999999999999999987754443
No 154
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.14 E-value=1.3e-10 Score=95.44 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
+|||+||||||+|+++|..+++.|++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 699999999999999999999999999999985
No 155
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.14 E-value=3.6e-09 Score=87.17 Aligned_cols=54 Identities=30% Similarity=0.340 Sum_probs=40.2
Q ss_pred HHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch
Q 044609 109 SLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS 166 (232)
Q Consensus 109 ~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S 166 (232)
.+.+.|.+.++..+|+++++|++|+.++ +. +.|.+.+|+++.||.||.|.-...
T Consensus 222 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~---~~-~~v~~~~g~~~~~d~vI~a~p~~~ 275 (451)
T PRK11883 222 SLIEALEEKLPAGTIHKGTPVTKIDKSG---DG-YEIVLSNGGEIEADAVIVAVPHPV 275 (451)
T ss_pred HHHHHHHHhCcCCeEEeCCEEEEEEEcC---Ce-EEEEECCCCEEEcCEEEECCCHHH
Confidence 4445555544323799999999998764 44 778888998999999999986643
No 156
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.14 E-value=3e-10 Score=93.94 Aligned_cols=34 Identities=41% Similarity=0.657 Sum_probs=32.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
..|||+||||||+|+++|..|++.|++|+|+|+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 5799999999999999999999999999999985
No 157
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.14 E-value=1.7e-09 Score=89.34 Aligned_cols=60 Identities=30% Similarity=0.394 Sum_probs=45.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCCcCcce-------eeee--------cccHHHHHHHcCChHH
Q 044609 6 EDVVIIGAGIAGLATAVALRRL----GIKALVLEKSDGLRATGA-------ALTL--------SPNAWLALDALGVSHK 65 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~----g~~v~viE~~~~~~~~~~-------~~~~--------~~~~~~~l~~~g~~~~ 65 (232)
.||+|||||++||++|+.|+++ |++|+|+|+++.++...+ .+.. .++..+.++++|+...
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~ 81 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHV 81 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCcc
Confidence 5899999999999999999998 999999999987642211 1111 2336777888887554
No 158
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.14 E-value=1e-09 Score=83.68 Aligned_cols=169 Identities=21% Similarity=0.319 Sum_probs=92.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCCcCcceeee---------eccc------HHHHH----HHcCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRL----GIKALVLEKSDGLRATGAALT---------LSPN------AWLAL----DALGV 62 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~----g~~v~viE~~~~~~~~~~~~~---------~~~~------~~~~l----~~~g~ 62 (232)
-||+|||||.+|++.|+.|.++ |++|+++||+.....++..+. +..+ +.+.| +.+++
T Consensus 87 ~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ehl~~ 166 (509)
T KOG2853|consen 87 CDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREHLGI 166 (509)
T ss_pred cCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHHHhhcc
Confidence 6999999999999999999863 799999999986543332211 1111 12222 23343
Q ss_pred hHHHH--hhccCce-----------------------eeEEEEcCCCce-eEEeccCCCC----CC-CCceeeeehHHHH
Q 044609 63 SHKLT--SVYAPAK-----------------------RVFVTNLGTGAT-QELSYAGKSG----RI-GSGLRSVHRQSLL 111 (232)
Q Consensus 63 ~~~~~--~~~~~~~-----------------------~~~~~~~~~~~~-~~~~~~~~~~----~~-~~~~~~~~~~~l~ 111 (232)
.+.-. -...|.. +........++. ..+++....+ .+ -....++++-.|+
T Consensus 167 ~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGwfdpw~LL 246 (509)
T KOG2853|consen 167 LDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKEGWFDPWALL 246 (509)
T ss_pred ccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccccccCHHHHH
Confidence 21100 0111100 111111111122 2233321111 00 2234578888888
Q ss_pred HHHhhhCC--CCeEEeCceEEEEEecCC--------CC-------Cc-cEEEEeCCC--cEEEccEEEecCCCch-hhhh
Q 044609 112 EALADELP--DDTIQFSSKIAAIDSQTL--------NG-------SS-AAIINLGDS--TIIKAKVLIGCDGVHS-MVAQ 170 (232)
Q Consensus 112 ~~l~~~~~--~~~i~~~~~v~~i~~~~~--------~g-------~~-~~~v~~~~g--~~~~a~~vV~A~G~~S-~~r~ 170 (232)
..+++.+. |+.+ .+.+|++.+.+.. ++ .. .+.|...|+ ++++|.++|.|.|+|| .+.+
T Consensus 247 s~~rrk~~~lGv~f-~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s~QvAr 325 (509)
T KOG2853|consen 247 SGIRRKAITLGVQF-VKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWSGQVAR 325 (509)
T ss_pred HHHHHHhhhhcceE-ecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccHHHHHH
Confidence 88888765 3333 3446777766521 02 00 144455554 4789999999999999 5777
Q ss_pred hhcCC
Q 044609 171 WLGLS 175 (232)
Q Consensus 171 ~~~~~ 175 (232)
+.++.
T Consensus 326 lAgIG 330 (509)
T KOG2853|consen 326 LAGIG 330 (509)
T ss_pred HhccC
Confidence 77654
No 159
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.13 E-value=1.8e-09 Score=97.62 Aligned_cols=39 Identities=28% Similarity=0.553 Sum_probs=35.5
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
+.+.||+|||+|.||+++|+.+++.|.+|+|+||.+..+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~G 445 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG 445 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 456899999999999999999999999999999987653
No 160
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.13 E-value=6e-10 Score=92.77 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=31.7
Q ss_pred CcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 2 EMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 2 ~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
-+.+.||+|||+|.||+++|+.++ +.+|+|+||.+.
T Consensus 6 ~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 6 RILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred cCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 345689999999999999999997 579999999876
No 161
>PRK06370 mercuric reductase; Validated
Probab=99.13 E-value=2.1e-10 Score=94.64 Aligned_cols=38 Identities=32% Similarity=0.443 Sum_probs=34.7
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
|.|.+|||+||||||+|+++|..|++.|++|+|+|+..
T Consensus 1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 45567999999999999999999999999999999863
No 162
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.13 E-value=9.9e-10 Score=91.62 Aligned_cols=63 Identities=16% Similarity=0.353 Sum_probs=49.7
Q ss_pred HHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhhhhhc
Q 044609 108 QSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLG 173 (232)
Q Consensus 108 ~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r~~~~ 173 (232)
..+.+.|.+.++ +++++++++|++|..++ +.. +.|.+.+|+++.||.||.|.+......++++
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~--~~~-~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~ 283 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEG--GRA-TAVHLADGERLDADAVVSNADLHHTYRRLLP 283 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC--CEE-EEEEECCCCEEECCEEEECCcHHHHHHHhcC
Confidence 567777776654 78999999999998764 444 7788889988999999999988766665553
No 163
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.13 E-value=1.6e-10 Score=95.31 Aligned_cols=37 Identities=38% Similarity=0.566 Sum_probs=33.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
++|||+||||||+|+++|..++++|++|+|||+...+
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~ 38 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTL 38 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCce
Confidence 4599999999999999999999999999999985544
No 164
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.12 E-value=1.1e-09 Score=92.56 Aligned_cols=39 Identities=38% Similarity=0.680 Sum_probs=35.5
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
+.++||+|||+|++|+++|+.++++|.+|+|+||....+
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~g 45 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFG 45 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 356899999999999999999999999999999988653
No 165
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.12 E-value=1.9e-10 Score=97.13 Aligned_cols=37 Identities=43% Similarity=0.673 Sum_probs=34.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 47 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF 47 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4689999999999999999999999999999998754
No 166
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.11 E-value=1.4e-09 Score=89.87 Aligned_cols=35 Identities=40% Similarity=0.692 Sum_probs=33.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
.+|||+||||||+|+++|..|++.|++|+|+|+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46999999999999999999999999999999875
No 167
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.11 E-value=4.3e-09 Score=84.82 Aligned_cols=61 Identities=30% Similarity=0.500 Sum_probs=47.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCcCc-------ce-------eeeec-ccHHHHHHHcCChHHHH
Q 044609 7 DVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGLRAT-------GA-------ALTLS-PNAWLALDALGVSHKLT 67 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~~~~-------~~-------~~~~~-~~~~~~l~~~g~~~~~~ 67 (232)
.|+|||||++||++|+.|++.+ .+++|+|+++..+.- |. .+... +..++.++++|+.+.+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 5999999999999999999999 999999999765321 11 11122 55677888999988776
No 168
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.11 E-value=5.4e-09 Score=86.14 Aligned_cols=59 Identities=36% Similarity=0.463 Sum_probs=46.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce------------e----eeecccHHHHHHHcCChHH
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA------------A----LTLSPNAWLALDALGVSHK 65 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~------------~----~~~~~~~~~~l~~~g~~~~ 65 (232)
+|+|||||++|+++|+.|+++|++|+|+|+.+.++...+ | ....++..+.++++|+.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 75 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR 75 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence 589999999999999999999999999999986543211 1 1124677888999987643
No 169
>PRK06116 glutathione reductase; Validated
Probab=99.10 E-value=2.3e-10 Score=94.09 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=32.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
.+|||+||||||+|+++|..|++.|++|+|+|+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4699999999999999999999999999999985
No 170
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.10 E-value=1.7e-09 Score=91.57 Aligned_cols=32 Identities=31% Similarity=0.566 Sum_probs=30.4
Q ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 8 VVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 8 V~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
|+|||+|+||+++|+.+++.|.+|+|+||...
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~ 32 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDA 32 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 79999999999999999999999999999873
No 171
>PRK09897 hypothetical protein; Provisional
Probab=99.10 E-value=9.8e-10 Score=91.09 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGL 40 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~ 40 (232)
+|+|||||++|+++|..|.+.+ ++|+|||+...+
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 8999999999999999999864 589999998765
No 172
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.10 E-value=8.8e-10 Score=91.18 Aligned_cols=35 Identities=40% Similarity=0.630 Sum_probs=32.7
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEec
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEK 36 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~ 36 (232)
|+ .+|||+||||||+|+++|..+++.|.+|+|||+
T Consensus 1 ~~-~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 1 MS-KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred CC-cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 54 469999999999999999999999999999998
No 173
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.08 E-value=9e-09 Score=85.08 Aligned_cols=60 Identities=15% Similarity=0.288 Sum_probs=44.1
Q ss_pred HHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhhhhh
Q 044609 108 QSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWL 172 (232)
Q Consensus 108 ~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r~~~ 172 (232)
..+.+.|.+.++.++|+++++|++|+.++ +. +.|.+.+|+++.||.||.|.- .....+++
T Consensus 226 ~~l~~~l~~~l~~~~i~~~~~V~~I~~~~---~~-~~v~~~~g~~~~ad~VI~a~p-~~~~~~ll 285 (463)
T PRK12416 226 STIIDRLEEVLTETVVKKGAVTTAVSKQG---DR-YEISFANHESIQADYVVLAAP-HDIAETLL 285 (463)
T ss_pred HHHHHHHHHhcccccEEcCCEEEEEEEcC---CE-EEEEECCCCEEEeCEEEECCC-HHHHHhhc
Confidence 35666666665445799999999998874 44 778888888899999999984 33344444
No 174
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.08 E-value=2.6e-09 Score=89.84 Aligned_cols=37 Identities=35% Similarity=0.617 Sum_probs=34.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.++||+|||+|.+|+++|+.+++.|.+|+||||.+..
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~ 41 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4689999999999999999999999999999998654
No 175
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=99.08 E-value=2.4e-09 Score=80.86 Aligned_cols=169 Identities=21% Similarity=0.292 Sum_probs=101.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcC--c-------ceeeeecccHHHH---------H----HH
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRA--T-------GAALTLSPNAWLA---------L----DA 59 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~--~-------~~~~~~~~~~~~~---------l----~~ 59 (232)
..||.+|||||++|++.|..|.-+ +.+|.|+|+...... + .+|+.+-|+++++ + ++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e 126 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDE 126 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhh
Confidence 459999999999999999999876 899999999876532 1 2466677765543 1 11
Q ss_pred cCCh-------------------HHHHhhc--cCceeeEEEEcCCCceeEE-ecc-CCCCCCCCceeeeehHHHHHHHhh
Q 044609 60 LGVS-------------------HKLTSVY--APAKRVFVTNLGTGATQEL-SYA-GKSGRIGSGLRSVHRQSLLEALAD 116 (232)
Q Consensus 60 ~g~~-------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~~l~~ 116 (232)
.++. +.+...+ ....++.+....+ ...+ ++- .......+....++...+...+.+
T Consensus 127 ~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~e--i~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~e 204 (453)
T KOG2665|consen 127 KKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSE--IMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGE 204 (453)
T ss_pred cCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccch--hhhcChhhhhhhhhcCCCcceeehHHHHHHHHH
Confidence 1111 1111111 1111222221110 1000 000 111111445567888888887776
Q ss_pred hCC--CCeEEeCceEEEEEecCCCCC--ccEEEEeCCCcEEEccEEEecCCCchh-hhhhhcCC
Q 044609 117 ELP--DDTIQFSSKIAAIDSQTLNGS--SAAIINLGDSTIIKAKVLIGCDGVHSM-VAQWLGLS 175 (232)
Q Consensus 117 ~~~--~~~i~~~~~v~~i~~~~~~g~--~~~~v~~~~g~~~~a~~vV~A~G~~S~-~r~~~~~~ 175 (232)
.++ +.+++.+-++..+.+..+ +. ..++|....+++++++.||.|+|..|. +..+.+.+
T Consensus 205 dF~~~gg~i~~n~~l~g~~~n~~-~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~ 267 (453)
T KOG2665|consen 205 DFDFMGGRIYTNFRLQGIAQNKE-ATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCE 267 (453)
T ss_pred HHHHhcccccccceeccchhccC-CCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCC
Confidence 665 788999999999987653 21 124555455779999999999999974 45555654
No 176
>PLN02612 phytoene desaturase
Probab=99.07 E-value=1.2e-08 Score=86.04 Aligned_cols=61 Identities=38% Similarity=0.487 Sum_probs=47.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce------------e----eeecccHHHHHHHcCChHH
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA------------A----LTLSPNAWLALDALGVSHK 65 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~------------~----~~~~~~~~~~l~~~g~~~~ 65 (232)
..+|+|||||++|+++|+.|+++|++|+++|+....+.... | ....++..+.++++|+.+.
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~ 169 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR 169 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc
Confidence 47899999999999999999999999999999876532111 1 1124567888899988554
No 177
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.07 E-value=2.6e-10 Score=83.54 Aligned_cols=33 Identities=61% Similarity=0.901 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
||+|||||++|+++|..|++.+++++++|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999987653
No 178
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.06 E-value=2.7e-09 Score=89.60 Aligned_cols=37 Identities=35% Similarity=0.676 Sum_probs=33.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
.++||+|||+| +|+++|+.+++.|.+|+||||.+..+
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~G 51 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVG 51 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCc
Confidence 46999999999 89999999999999999999987653
No 179
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.06 E-value=5e-10 Score=66.78 Aligned_cols=34 Identities=50% Similarity=0.724 Sum_probs=30.5
Q ss_pred EECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc
Q 044609 10 IIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT 43 (232)
Q Consensus 10 IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~ 43 (232)
|||||++|+++|+.|+++|++|+|+|+.+.++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~ 34 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGR 34 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcc
Confidence 8999999999999999999999999999887543
No 180
>PLN02507 glutathione reductase
Probab=99.05 E-value=8.5e-10 Score=91.58 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
+|||+||||||+|+.+|..+++.|.+|+|||+.
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~ 57 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELP 57 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 489999999999999999999999999999973
No 181
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=99.05 E-value=1.3e-09 Score=87.00 Aligned_cols=111 Identities=20% Similarity=0.262 Sum_probs=67.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc--------ceeeeecccHHHHHHHcCChHH-HHhhccCceee
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT--------GAALTLSPNAWLALDALGVSHK-LTSVYAPAKRV 76 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~--------~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~~ 76 (232)
.||+|||||++|+.+|+.|+++|++|+|+|+.+..... .+...+...+...+...|++.. +...+. .
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgs----l 78 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS----L 78 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcc----h
Confidence 49999999999999999999999999999987655321 1233344445666777787763 222211 1
Q ss_pred EEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEE
Q 044609 77 FVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAI 132 (232)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i 132 (232)
.+.. . . ....+ ......++|..+.+.|.+.+ ++++++ ..+|+++
T Consensus 79 ~~~a--a-d--~~~vP------A~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l 125 (436)
T PRK05335 79 IMEA--A-D--AHRVP------AGGALAVDREGFSEYVTEALENHPLITVI-REEVTEI 125 (436)
T ss_pred heec--c-c--ccCCC------CccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhcc
Confidence 1100 0 0 00001 11223678887888887765 356665 4455555
No 182
>PRK12839 hypothetical protein; Provisional
Probab=99.05 E-value=2.7e-09 Score=89.86 Aligned_cols=37 Identities=43% Similarity=0.573 Sum_probs=34.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.++||+|||+|.+|+++|+.++++|.+|+||||....
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4689999999999999999999999999999998765
No 183
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.05 E-value=7.6e-09 Score=87.44 Aligned_cols=37 Identities=35% Similarity=0.603 Sum_probs=34.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
++||+|||+|.+|+++|+.++++|.+|+||||.+..+
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g 47 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG 47 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence 5899999999999999999999999999999997653
No 184
>PRK13748 putative mercuric reductase; Provisional
Probab=99.04 E-value=1.8e-09 Score=91.31 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=32.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
.+|||+||||||+|+++|..|++.|.+|+|||++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4699999999999999999999999999999987
No 185
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.04 E-value=1.4e-09 Score=90.70 Aligned_cols=41 Identities=41% Similarity=0.571 Sum_probs=37.5
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
|...++||+|||||.|||.+|+.++..|++|+|+||....+
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 45677999999999999999999999999999999998765
No 186
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.03 E-value=2.5e-09 Score=87.54 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=42.8
Q ss_pred HHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC-CCcEEEccEEEecCCCchhhh
Q 044609 108 QSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG-DSTIIKAKVLIGCDGVHSMVA 169 (232)
Q Consensus 108 ~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~-~g~~~~a~~vV~A~G~~S~~r 169 (232)
..+.+.|.+.++ +++++++++|+++..+++++.. +.|... ++.++.|+.||+|+|.++.-+
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v-~gv~~~~~~~~i~ak~VIlAtGG~~~n~ 186 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAH-DGPLTTVGTHRITTQALVLAAGGLGANR 186 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeE-EEEEEcCCcEEEEcCEEEEcCCCcccCH
Confidence 356667766554 7899999999999875311333 445443 345799999999999887533
No 187
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.03 E-value=5.4e-10 Score=91.74 Aligned_cols=34 Identities=35% Similarity=0.520 Sum_probs=32.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
++|||+||||||+|+++|..|++.|++|+|+||.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 4699999999999999999999999999999985
No 188
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.02 E-value=1.8e-09 Score=90.06 Aligned_cols=36 Identities=33% Similarity=0.572 Sum_probs=33.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
++||+|||+| +|+++|+.+++.|.+|+||||.+..+
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~G 42 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFG 42 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 5899999999 99999999999999999999987643
No 189
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.01 E-value=6.4e-09 Score=84.21 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=69.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL 81 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 81 (232)
...+|+|||||++|+++|..|++.|. +|+|+++.+..... +..+...+.....
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~---------------r~~l~~~~~~~~~---------- 56 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYE---------------RPPLSKSMLLEDS---------- 56 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCC---------------CCCCCHHHHCCCC----------
Confidence 34589999999999999999999876 79999987644210 0001110000000
Q ss_pred CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609 82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC 161 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A 161 (232)
. . . . .+.. .+.+.+ .+++++.++.|..+..+. ..|.+.+|.++.+|.||+|
T Consensus 57 -~--------~------~--~-~~~~---~~~~~~--~~i~~~~g~~V~~id~~~------~~v~~~~g~~~~yd~LViA 107 (396)
T PRK09754 57 -P--------Q------L--Q-QVLP---ANWWQE--NNVHLHSGVTIKTLGRDT------RELVLTNGESWHWDQLFIA 107 (396)
T ss_pred -c--------c------c--c-ccCC---HHHHHH--CCCEEEcCCEEEEEECCC------CEEEECCCCEEEcCEEEEc
Confidence 0 0 0 0 0001 122222 278999999999997653 3456678888999999999
Q ss_pred CCCch
Q 044609 162 DGVHS 166 (232)
Q Consensus 162 ~G~~S 166 (232)
+|...
T Consensus 108 TGs~~ 112 (396)
T PRK09754 108 TGAAA 112 (396)
T ss_pred cCCCC
Confidence 99875
No 190
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.99 E-value=5.5e-09 Score=88.31 Aligned_cols=36 Identities=39% Similarity=0.661 Sum_probs=33.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
++||+|||+|++|+++|+.++++|.+|+||||....
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~ 51 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV 51 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 589999999999999999999999999999998764
No 191
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=3.2e-10 Score=91.36 Aligned_cols=147 Identities=21% Similarity=0.250 Sum_probs=80.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeeccc----HHHHHHHcCChHHHHhhccCceeeEE
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPN----AWLALDALGVSHKLTSVYAPAKRVFV 78 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~----~~~~l~~~g~~~~~~~~~~~~~~~~~ 78 (232)
..|||+|||||.||+-+|+..+|.|.+++++--+... +.-++.-++.-- ..+..+.|| -+.........+.+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALG---G~Mg~~~D~~~IQ~ 79 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALG---GLMGKAADKAGIQF 79 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhcc---chHHHhhhhcCCch
Confidence 3599999999999999999999999999999876542 111110000000 011112221 11111111112222
Q ss_pred EEcCCCce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEE
Q 044609 79 TNLGTGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIK 154 (232)
Q Consensus 79 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~ 154 (232)
......+- .. .......++..+.+.+.+.+ ++..++.+ .|+++..++ +..++.|.+.+|..+.
T Consensus 80 r~LN~sKGPAV----------ra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~--~~~v~GV~t~~G~~~~ 146 (621)
T COG0445 80 RMLNSSKGPAV----------RAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEE--GQRVVGVVTADGPEFH 146 (621)
T ss_pred hhccCCCcchh----------cchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcC--CCeEEEEEeCCCCeee
Confidence 21111100 00 00111234444444444433 36666655 677777654 4423889999999999
Q ss_pred ccEEEecCCCch
Q 044609 155 AKVLIGCDGVHS 166 (232)
Q Consensus 155 a~~vV~A~G~~S 166 (232)
|+.||+++|-+-
T Consensus 147 a~aVVlTTGTFL 158 (621)
T COG0445 147 AKAVVLTTGTFL 158 (621)
T ss_pred cCEEEEeecccc
Confidence 999999999763
No 192
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.99 E-value=1.9e-09 Score=89.08 Aligned_cols=35 Identities=40% Similarity=0.648 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.|||+||||||+|+++|..|++.|.+|+|||+ +.+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~ 35 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYL 35 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCC
Confidence 38999999999999999999999999999998 444
No 193
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.99 E-value=9.3e-09 Score=84.91 Aligned_cols=35 Identities=43% Similarity=0.620 Sum_probs=32.6
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
|++|||+||||||+|+++|..|++.|.+|+|||++
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35699999999999999999999999999999993
No 194
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.98 E-value=1.7e-08 Score=89.38 Aligned_cols=36 Identities=36% Similarity=0.577 Sum_probs=33.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
.++||+|||+|.+|+++|+.+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 458999999999999999999999999999999875
No 195
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.98 E-value=2.6e-09 Score=86.74 Aligned_cols=38 Identities=47% Similarity=0.714 Sum_probs=35.0
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
+++||++|||+||+|..+|..+++.|.+|+++|+.+..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~l 39 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERL 39 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCc
Confidence 36799999999999999999999999999999999744
No 196
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.95 E-value=1.6e-08 Score=62.57 Aligned_cols=80 Identities=28% Similarity=0.400 Sum_probs=60.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCce
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGAT 86 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (232)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+... +
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~------------------~------------------------ 38 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG------------------F------------------------ 38 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT------------------S------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh------------------c------------------------
Confidence 4899999999999999999999999999998765210 0
Q ss_pred eEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC
Q 044609 87 QELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS 150 (232)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g 150 (232)
. .-.+..+.+.|.+. ++++++++.+.++..++ +. +.|+++||
T Consensus 39 ------------~----~~~~~~~~~~l~~~--gV~v~~~~~v~~i~~~~---~~-~~V~~~~g 80 (80)
T PF00070_consen 39 ------------D----PDAAKILEEYLRKR--GVEVHTNTKVKEIEKDG---DG-VEVTLEDG 80 (80)
T ss_dssp ------------S----HHHHHHHHHHHHHT--TEEEEESEEEEEEEEET---TS-EEEEEETS
T ss_pred ------------C----HHHHHHHHHHHHHC--CCEEEeCCEEEEEEEeC---CE-EEEEEecC
Confidence 0 01233445566654 89999999999999875 33 44887776
No 197
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.95 E-value=3.4e-08 Score=83.58 Aligned_cols=34 Identities=29% Similarity=0.572 Sum_probs=31.3
Q ss_pred cEEEECCCHHHHHHHHHHH----hCCCcEEEEecCCCC
Q 044609 7 DVVIIGAGIAGLATAVALR----RLGIKALVLEKSDGL 40 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~----~~g~~v~viE~~~~~ 40 (232)
||+|||+|.||+++|+.++ +.|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 8999999999999999998 679999999998754
No 198
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.94 E-value=1.4e-09 Score=90.05 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=44.0
Q ss_pred HHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609 108 QSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV 164 (232)
Q Consensus 108 ~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~ 164 (232)
..+.+.|.+.++ |++|+++++|++|..++ +.. +.+...+|+.+.+|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~--g~g-~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEG--GKG-VGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeC--Ccc-eEEeccccceeccceeEecCch
Confidence 457777777664 79999999999999886 555 7888888877899999888766
No 199
>PTZ00058 glutathione reductase; Provisional
Probab=98.94 E-value=2.3e-09 Score=89.77 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=32.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
++|||+|||||++|.++|..+++.|.+|+||||+
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 5699999999999999999999999999999986
No 200
>PRK14727 putative mercuric reductase; Provisional
Probab=98.93 E-value=9.8e-09 Score=85.07 Aligned_cols=37 Identities=30% Similarity=0.504 Sum_probs=34.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.+|||+|||+|++|+++|..|++.|.+|+++|+...+
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~ 51 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVI 51 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence 4599999999999999999999999999999997655
No 201
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.92 E-value=3.4e-08 Score=79.15 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=46.3
Q ss_pred eeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCC--cEEEccEEEecCCCc-hh
Q 044609 104 SVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDS--TIIKAKVLIGCDGVH-SM 167 (232)
Q Consensus 104 ~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g--~~~~a~~vV~A~G~~-S~ 167 (232)
.+.-.++.+.|.+.++ |++++.+++|.++..++ +.. ..+.+.++ .+++||.+|+|+|.| |.
T Consensus 259 Sv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v-~~V~t~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 259 SLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRV-TRIHTRNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeE-EEEEecCCccceEECCEEEEccCCCcCH
Confidence 3455677777777664 78999999999998764 333 44665665 479999999999999 74
No 202
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.92 E-value=1.8e-08 Score=79.59 Aligned_cols=152 Identities=18% Similarity=0.251 Sum_probs=73.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCCCcCcceeeeecccHH--HHHHHcCChHHHHhhccCceeeEEE--
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLG-IKALVLEKSDGLRATGAALTLSPNAW--LALDALGVSHKLTSVYAPAKRVFVT-- 79 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~~~~~~~~~~~~~~~~--~~l~~~g~~~~~~~~~~~~~~~~~~-- 79 (232)
.+|+|+||.||++|++|..|...+ .+++.+||.+...-+. ++.+....+ ..|+.+ -.-..|.....+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~-gmll~~~~~q~~fl~Dl------vt~~~P~s~~sflnY 74 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHP-GMLLPGARMQVSFLKDL------VTLRDPTSPFSFLNY 74 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTG-GG--SS-B-SS-TTSSS------STTT-TTSTTSHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCC-ccCCCCCcccccccccc------CcCcCCCCcccHHHH
Confidence 489999999999999999999875 8999999988764332 111111100 111111 0000000000000
Q ss_pred EcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCC-CccEEEEeC----CCcE
Q 044609 80 NLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNG-SSAAIINLG----DSTI 152 (232)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g-~~~~~v~~~----~g~~ 152 (232)
-...++.. .|- ........|.++.+++...+. ...+.++.+|++|....+.+ .. +.|.+. ++++
T Consensus 75 L~~~~rl~--~f~------~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~-~~V~~~~~~g~~~~ 145 (341)
T PF13434_consen 75 LHEHGRLY--EFY------NRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDL-FRVTTRDSDGDGET 145 (341)
T ss_dssp HHHTT-HH--HHH------HH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEE-EEEEEEETTS-EEE
T ss_pred HHHcCChh--hhh------hcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccE-EEEEEeecCCCeeE
Confidence 00011110 000 011224567777776666554 34599999999999875311 23 777763 3458
Q ss_pred EEccEEEecCCCchhhhhhh
Q 044609 153 IKAKVLIGCDGVHSMVAQWL 172 (232)
Q Consensus 153 ~~a~~vV~A~G~~S~~r~~~ 172 (232)
+.|+.||+|+|....+.+.+
T Consensus 146 ~~ar~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 146 YRARNVVLATGGQPRIPEWF 165 (341)
T ss_dssp EEESEEEE----EE---GGG
T ss_pred EEeCeEEECcCCCCCCCcch
Confidence 99999999999776665555
No 203
>PLN02676 polyamine oxidase
Probab=98.92 E-value=1.3e-07 Score=78.49 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=44.4
Q ss_pred hHHHHHHHhhhCC--------CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch
Q 044609 107 RQSLLEALADELP--------DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS 166 (232)
Q Consensus 107 ~~~l~~~l~~~~~--------~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S 166 (232)
...+.+.|.+.+. +.+|+++++|++|...+ +. +.|++.+|+++.||.||.|.....
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~---~g-V~V~~~~G~~~~a~~VIvtvPl~v 286 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK---NG-VTVKTEDGSVYRAKYVIVSVSLGV 286 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC---Cc-EEEEECCCCEEEeCEEEEccChHH
Confidence 4567777777552 25799999999998874 44 889999999999999999997543
No 204
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.91 E-value=6.3e-09 Score=91.94 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=33.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
..+|+|||||||||++|..|++.|++|+|+|+.+.+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~ 341 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL 341 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Confidence 479999999999999999999999999999998654
No 205
>PLN02546 glutathione reductase
Probab=98.91 E-value=3.7e-09 Score=88.52 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEK 36 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~ 36 (232)
+|||+|||+||+|..+|..+++.|.+|+|+|+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 58999999999999999999999999999996
No 206
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.89 E-value=6.9e-08 Score=79.98 Aligned_cols=38 Identities=39% Similarity=0.469 Sum_probs=33.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCCcC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRL----GIKALVLEKSDGLRA 42 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~----g~~v~viE~~~~~~~ 42 (232)
..+|+|||||++||++|+.|++. |.+|+|+|+.+.++.
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG 63 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGG 63 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCC
Confidence 36899999999999999999995 689999999987643
No 207
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.87 E-value=2.4e-08 Score=82.14 Aligned_cols=110 Identities=18% Similarity=0.302 Sum_probs=66.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (232)
+|+|||||++|+++|..|++.+ .+|+|||+.+....... ++ .... .+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~---------------~~--------------~~~~--~~ 50 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGAC---------------GL--------------PYFV--GG 50 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecC---------------CC--------------ceEe--cc
Confidence 6999999999999999999875 58999999875421100 00 0000 00
Q ss_pred ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC-CCcEEE--ccEEEec
Q 044609 85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG-DSTIIK--AKVLIGC 161 (232)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~-~g~~~~--a~~vV~A 161 (232)
. +. .... .+.+ ..+.+.+ .+++++.+++|+++..++ .. +.+... ++.++. +|.||+|
T Consensus 51 ---~--~~------~~~~-~~~~--~~~~~~~--~gv~~~~~~~V~~id~~~---~~-v~~~~~~~~~~~~~~yd~lviA 110 (444)
T PRK09564 51 ---F--FD------DPNT-MIAR--TPEEFIK--SGIDVKTEHEVVKVDAKN---KT-ITVKNLKTGSIFNDTYDKLMIA 110 (444)
T ss_pred ---c--cC------CHHH-hhcC--CHHHHHH--CCCeEEecCEEEEEECCC---CE-EEEEECCCCCEEEecCCEEEEC
Confidence 0 00 0000 0000 0122222 278899999999997763 33 555432 355566 9999999
Q ss_pred CCCchh
Q 044609 162 DGVHSM 167 (232)
Q Consensus 162 ~G~~S~ 167 (232)
+|....
T Consensus 111 tG~~~~ 116 (444)
T PRK09564 111 TGARPI 116 (444)
T ss_pred CCCCCC
Confidence 998754
No 208
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.87 E-value=9.1e-09 Score=82.27 Aligned_cols=152 Identities=18% Similarity=0.195 Sum_probs=78.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC---CcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCc-eeeEEEEc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLG---IKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPA-KRVFVTNL 81 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g---~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~ 81 (232)
++|+|||+|++|+++|..|.+.- -+|.|+|+.+.. |+|+.+++..... .+++...-.....+- ...+..|.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~---G~GiaYs~~~p~~--~lNv~a~~mS~~~pD~p~~F~~WL 76 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF---GQGIAYSTEEPEH--LLNVPAARMSAFAPDIPQDFVRWL 76 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc---CCCccCCCCCchh--hhccccccccccCCCCchHHHHHH
Confidence 58999999999999999999851 239999999876 5566665543211 111111000000000 00000010
Q ss_pred CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhh-------CCCC-eEEeCceEEEEEecCCCCCccEEEEeCCCcEE
Q 044609 82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADE-------LPDD-TIQFSSKIAAIDSQTLNGSSAAIINLGDSTII 153 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~-~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~ 153 (232)
.. .. ..+....+.......+..|..|-++|.+. .+.. -.....+.+++...++ +.. ..+...+|...
T Consensus 77 ~~-~~--~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n-~~~-~~~~~~~g~~~ 151 (474)
T COG4529 77 QK-QL--QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTN-AGG-YLVTTADGPSE 151 (474)
T ss_pred Hh-cc--cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccC-Cce-EEEecCCCCee
Confidence 00 00 00000000001111123344444443332 2222 2334567777776643 454 78888999999
Q ss_pred EccEEEecCCCchh
Q 044609 154 KAKVLIGCDGVHSM 167 (232)
Q Consensus 154 ~a~~vV~A~G~~S~ 167 (232)
.||.+|+|+|.--.
T Consensus 152 ~ad~~Vlatgh~~~ 165 (474)
T COG4529 152 IADIIVLATGHSAP 165 (474)
T ss_pred eeeEEEEeccCCCC
Confidence 99999999987543
No 209
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.86 E-value=3.9e-08 Score=87.94 Aligned_cols=36 Identities=36% Similarity=0.623 Sum_probs=33.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
++||+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~ 198 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA 198 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 479999999999999999999999999999998765
No 210
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.8e-09 Score=80.83 Aligned_cols=111 Identities=24% Similarity=0.427 Sum_probs=74.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEE-ecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVL-EKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT 83 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~vi-E~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (232)
.|||+||||||+|.++|.+.+|+|++.-++ ||-. | +.++..++..
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfG-----G----------QvldT~~IEN------------------- 256 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFG-----G----------QVLDTMGIEN------------------- 256 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhC-----C----------eeccccchhh-------------------
Confidence 499999999999999999999999988554 4321 1 1112121111
Q ss_pred CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609 84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC 161 (232)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A 161 (232)
.+..+ ...-.+|...|.++.+ .+++....+.+++++..+.+.. ..|++.+|-.++++.||++
T Consensus 257 ----fIsv~-----------~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l-~ev~l~nGavLkaktvIls 320 (520)
T COG3634 257 ----FISVP-----------ETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGL-IEVELANGAVLKARTVILA 320 (520)
T ss_pred ----eeccc-----------cccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCcc-EEEEecCCceeccceEEEe
Confidence 00001 1123456666666665 5666666777788774432444 8999999999999999999
Q ss_pred CCCc
Q 044609 162 DGVH 165 (232)
Q Consensus 162 ~G~~ 165 (232)
+|+.
T Consensus 321 tGAr 324 (520)
T COG3634 321 TGAR 324 (520)
T ss_pred cCcc
Confidence 9974
No 211
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.86 E-value=2.2e-08 Score=80.19 Aligned_cols=149 Identities=26% Similarity=0.331 Sum_probs=84.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC------cceeeeeccc-HH--HHHHHc----C------------
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA------TGAALTLSPN-AW--LALDAL----G------------ 61 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~------~~~~~~~~~~-~~--~~l~~~----g------------ 61 (232)
||+|||+|+|||++|+.|++. ++|+|+-|.+.... .|.+..+.+. +. ..-+-+ |
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 999999999999999999998 99999999875521 2222223221 11 111111 0
Q ss_pred ----ChHHHHhhccCceeeEEEEcCCCceeEEeccCCCCCCCCceeeee-----hHHHHHHHhhhC---CCCeEEeCceE
Q 044609 62 ----VSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVH-----RQSLLEALADEL---PDDTIQFSSKI 129 (232)
Q Consensus 62 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~l~~~~---~~~~i~~~~~v 129 (232)
..+.+...+.+++.-. ++ .+.+....+ ......++ -..+++.|.+.+ ++++++.++.+
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~-----~g---~~~lt~Egg--HS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a 157 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDE-----DG---RLHLTREGG--HSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEA 157 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCC-----CC---ceeeeeecc--cCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchh
Confidence 1122233333332111 01 011111111 11111111 245677777666 48999999999
Q ss_pred EEEEecCCCCCccEEEEe--CCC--cEEEccEEEecCCCchhh
Q 044609 130 AAIDSQTLNGSSAAIINL--GDS--TIIKAKVLIGCDGVHSMV 168 (232)
Q Consensus 130 ~~i~~~~~~g~~~~~v~~--~~g--~~~~a~~vV~A~G~~S~~ 168 (232)
.++..++ +.....+.. .++ .++.++.||+|+|..+.+
T Consensus 158 ~~li~~~--~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~l 198 (518)
T COG0029 158 LDLIIED--GIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGL 198 (518)
T ss_pred hhhhhcC--CceEeEEEEecCCCeEEEEecCeEEEecCCCccc
Confidence 9998875 323124443 333 478899999999998754
No 212
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.85 E-value=5.3e-08 Score=78.40 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=32.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 37999999999999999999999999999987653
No 213
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.85 E-value=1.5e-07 Score=72.20 Aligned_cols=58 Identities=26% Similarity=0.409 Sum_probs=44.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceee---------e-----------ecccHHHHHHHcCChH
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAAL---------T-----------LSPNAWLALDALGVSH 64 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~---------~-----------~~~~~~~~l~~~g~~~ 64 (232)
.+|+|||+|++||++|+.|+++ ++|+++|.+...+.+...+ . .-|+..+.++.+|+..
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t 86 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDT 86 (447)
T ss_pred cceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCCC
Confidence 6899999999999999999976 8999999998775443222 1 2345677888888754
No 214
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.83 E-value=1.8e-08 Score=79.98 Aligned_cols=38 Identities=39% Similarity=0.698 Sum_probs=35.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
...||||||+|.+||++|+.|.|.|++|+|+|-++..+
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~G 43 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVG 43 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcC
Confidence 35799999999999999999999999999999988764
No 215
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.82 E-value=9.9e-08 Score=76.82 Aligned_cols=106 Identities=21% Similarity=0.364 Sum_probs=77.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||||+.|+-+|..|++.|.+|+++++.+.+... .
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~----------------~------------------------- 180 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS----------------L------------------------- 180 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch----------------h-------------------------
Confidence 57999999999999999999999999999986543100 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
+ +. -....+.+.|.+. +++++++++|.++..++ .. +.+.+.+|+++.||.||.|+|..
T Consensus 181 ---~---------~~----~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~---~~-~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 181 ---M---------PP----EVSSRLQHRLTEM--GVHLLLKSQLQGLEKTD---SG-IRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred ---C---------CH----HHHHHHHHHHHhC--CCEEEECCeEEEEEccC---CE-EEEEEcCCcEEECCEEEECcCCC
Confidence 0 00 0123344445443 89999999999998653 33 66788899999999999999986
Q ss_pred hh--hhhhhcC
Q 044609 166 SM--VAQWLGL 174 (232)
Q Consensus 166 S~--~r~~~~~ 174 (232)
+. +.+.+++
T Consensus 239 p~~~l~~~~gl 249 (377)
T PRK04965 239 PNTALARRAGL 249 (377)
T ss_pred cchHHHHHCCC
Confidence 53 4444443
No 216
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.80 E-value=4.7e-07 Score=67.85 Aligned_cols=159 Identities=16% Similarity=0.222 Sum_probs=86.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCC------CcEEEEecCCCCcC-cceeeeec-----ccHHHHHHH--cCChHHHHhh
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLG------IKALVLEKSDGLRA-TGAALTLS-----PNAWLALDA--LGVSHKLTSV 69 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g------~~v~viE~~~~~~~-~~~~~~~~-----~~~~~~l~~--~g~~~~~~~~ 69 (232)
+...|+|||||+.|.++|++|++++ ++|+|+|+..-.+. +|..-++. +...+-|.. +.+.+.+.++
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsde 88 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDE 88 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHh
Confidence 3478999999999999999999987 89999998875532 22211111 100111111 1122222221
Q ss_pred ccCc--------eeeEEEEc----CCCce-eEEecc--------CCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEe
Q 044609 70 YAPA--------KRVFVTNL----GTGAT-QELSYA--------GKSGRIGSGLRSVHRQSLLEALADELP---DDTIQF 125 (232)
Q Consensus 70 ~~~~--------~~~~~~~~----~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~ 125 (232)
..-. +.+..... ..+.. ..+++. ...|. ......+++..|.+.+++.+. ++++.+
T Consensus 89 ydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~-t~ttaqvhP~lFc~~i~sea~k~~~V~lv~ 167 (380)
T KOG2852|consen 89 YDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGS-TNTTAQVHPYLFCHFILSEAEKRGGVKLVF 167 (380)
T ss_pred hcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccC-CCccceeCHHHHHHHHHHHHHhhcCeEEEE
Confidence 1111 11221111 00000 111111 00111 334567999999999998774 588888
Q ss_pred CceEEEEEecCCCCCccEEEEeC---C-CcEEEccEEEecCCCchh
Q 044609 126 SSKIAAIDSQTLNGSSAAIINLG---D-STIIKAKVLIGCDGVHSM 167 (232)
Q Consensus 126 ~~~v~~i~~~~~~g~~~~~v~~~---~-g~~~~a~~vV~A~G~~S~ 167 (232)
+ +|.++..+. ++. ..+..+ + ......+.+|++.|.|+.
T Consensus 168 G-kv~ev~dEk--~r~-n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 168 G-KVKEVSDEK--HRI-NSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred e-eeEEeeccc--ccc-cccchhhhcCceEEeeeeEEEEecCCCch
Confidence 8 677876332 332 333332 2 235677899999999973
No 217
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.79 E-value=3.8e-08 Score=86.27 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=70.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609 5 EEDVVIIGAGIAGLATAVALRRL----GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN 80 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~----g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 80 (232)
+.+|+|||+|++|+.+|..|.++ +++|+||++.+.+.... ..+...+.. ..
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r---------------~~L~~~~~~--~~-------- 57 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDR---------------VHLSSYFSH--HT-------- 57 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccC---------------CcchHhHcC--CC--------
Confidence 34899999999999999999764 57999999987653211 001000000 00
Q ss_pred cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEe
Q 044609 81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG 160 (232)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~ 160 (232)
. ....... .+++.+ .+++++.+++|+++..+. ..|.+.+|.++.+|.||+
T Consensus 58 ----------~---------~~l~~~~---~~~~~~--~gI~~~~g~~V~~Id~~~------~~V~~~~G~~i~yD~LVI 107 (847)
T PRK14989 58 ----------A---------EELSLVR---EGFYEK--HGIKVLVGERAITINRQE------KVIHSSAGRTVFYDKLIM 107 (847)
T ss_pred ----------H---------HHccCCC---HHHHHh--CCCEEEcCCEEEEEeCCC------cEEEECCCcEEECCEEEE
Confidence 0 0000111 122222 278999999999987652 446678888899999999
Q ss_pred cCCCchhh
Q 044609 161 CDGVHSMV 168 (232)
Q Consensus 161 A~G~~S~~ 168 (232)
|+|....+
T Consensus 108 ATGs~p~~ 115 (847)
T PRK14989 108 ATGSYPWI 115 (847)
T ss_pred CCCCCcCC
Confidence 99987643
No 218
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.79 E-value=3.8e-08 Score=86.51 Aligned_cols=36 Identities=42% Similarity=0.593 Sum_probs=33.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
..+|+||||||||+++|+.|+++|++|+|+|+.+.+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 368999999999999999999999999999988765
No 219
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.78 E-value=1.7e-08 Score=83.54 Aligned_cols=33 Identities=33% Similarity=0.580 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
+|||+|||+||+|+.+|..+++.|.+|++||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 220
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.78 E-value=4.1e-08 Score=81.26 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=31.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRL-GIKALVLEKS 37 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~-g~~v~viE~~ 37 (232)
.+|||+||||||+|..+|..+++. |.+|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 569999999999999999999996 9999999984
No 221
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.78 E-value=9.4e-08 Score=75.81 Aligned_cols=56 Identities=14% Similarity=0.279 Sum_probs=45.8
Q ss_pred HHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch
Q 044609 108 QSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS 166 (232)
Q Consensus 108 ~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S 166 (232)
..+++.+.+.+. |++++++++|.+++..+ +.. ..|.+++|.++.+|.||+|-|+.+
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~--~~~-~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIED--NEV-LGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEecC--Cce-EEEEccCCcEEecCEEEEccCcch
Confidence 355566666554 79999999999999876 344 778899999999999999999976
No 222
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.78 E-value=1.3e-07 Score=77.64 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=67.6
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (232)
+|+|||||++|+.+|..|++. +.+|+|||+.+...-..++ +... ... . ...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~---------------lp~~-~~~----------~-~~~ 55 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCA---------------LPYY-IGE----------V-VED 55 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCC---------------cchh-hcC----------c-cCC
Confidence 799999999999999999886 6799999998754211100 0000 000 0 000
Q ss_pred ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC-Cc--EEEccEEEec
Q 044609 85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD-ST--IIKAKVLIGC 161 (232)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-g~--~~~a~~vV~A 161 (232)
......+.+ +.+.+. .+++++.+++|+++..++ .. +.+...+ ++ ++.+|.||+|
T Consensus 56 --------------~~~~~~~~~----~~~~~~-~~i~v~~~~~V~~Id~~~---~~-v~~~~~~~~~~~~~~yd~lviA 112 (438)
T PRK13512 56 --------------RKYALAYTP----EKFYDR-KQITVKTYHEVIAINDER---QT-VTVLNRKTNEQFEESYDKLILS 112 (438)
T ss_pred --------------HHHcccCCH----HHHHHh-CCCEEEeCCEEEEEECCC---CE-EEEEECCCCcEEeeecCEEEEC
Confidence 000001111 122222 278999999999997763 43 5555433 23 4689999999
Q ss_pred CCCchh
Q 044609 162 DGVHSM 167 (232)
Q Consensus 162 ~G~~S~ 167 (232)
+|....
T Consensus 113 tGs~~~ 118 (438)
T PRK13512 113 PGASAN 118 (438)
T ss_pred CCCCCC
Confidence 998753
No 223
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.77 E-value=4.4e-08 Score=80.85 Aligned_cols=32 Identities=28% Similarity=0.571 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
+|+||||||+|+++|..+++.|.+|+||||.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 69999999999999999999999999999875
No 224
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.77 E-value=2.9e-07 Score=74.27 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=54.0
Q ss_pred CceeeeehHHHHHHHhhhCC-CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609 100 SGLRSVHRQSLLEALADELP-DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM 167 (232)
Q Consensus 100 ~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~ 167 (232)
+....++...+.+.|.+.+. +++++++++|.+++.++ .. +.|.+.+|.++.||.||+|+|.|+.
T Consensus 127 ~~~g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~---~~-~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 127 PQGGWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDG---EG-WQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred CCCcccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcC---Ce-EEEEeCCCCEEEcCEEEEcCCcccc
Confidence 34457888999999998876 78999999999998753 44 7888888888999999999999984
No 225
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.77 E-value=3.2e-08 Score=75.63 Aligned_cols=41 Identities=32% Similarity=0.604 Sum_probs=36.6
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
|.+..+||||||+|.+||.+|..|+..|.+|+|+|+.....
T Consensus 1 ~d~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqn 41 (552)
T COG3573 1 SDGLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQN 41 (552)
T ss_pred CCcccccEEEECccHHHHHHHHHHHhcCceEEEEccccccc
Confidence 45567999999999999999999999999999999987653
No 226
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.77 E-value=8.9e-09 Score=84.49 Aligned_cols=36 Identities=33% Similarity=0.492 Sum_probs=33.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
++|||+||||||+|+++|..|++.|++|+|+||.+.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 479999999999999999999999999999999864
No 227
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.76 E-value=1.3e-08 Score=83.90 Aligned_cols=39 Identities=41% Similarity=0.675 Sum_probs=35.7
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
+++++|||||||+||+++|.+|.+.|++|+|+|.++..+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG 51 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence 345799999999999999999999999999999988764
No 228
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.5e-08 Score=80.53 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=80.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeeccc-HHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPN-AWLALDALGVSHKLTSVYAPAKRVFVTNL 81 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~-~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 81 (232)
.+|||+|||||-||+-+|.+.+|.|.+.+++-.+-.. +.-++.-++..- --..+++.+.++.+....+...++.+...
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~L 106 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVL 106 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHh
Confidence 4689999999999999999999999999999876432 111110000000 00111222112222222221111111111
Q ss_pred CCCceeEEeccCCCCC-CCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecC-CCCCc-cEEEEeCCCcEEEc
Q 044609 82 GTGATQELSYAGKSGR-IGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQT-LNGSS-AAIINLGDSTIIKA 155 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~-~~g~~-~~~v~~~~g~~~~a 155 (232)
+ ...|. .......++|..+-..+.+.+ ++..++.+ .|.++...+ +.+.. ...|.+.||..+.|
T Consensus 107 N----------rs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dgt~v~a 175 (679)
T KOG2311|consen 107 N----------RSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVDGTVVYA 175 (679)
T ss_pred h----------ccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEecCcEecc
Confidence 0 01110 011112455555555555544 35677766 555655432 21222 36678899999999
Q ss_pred cEEEecCCCc
Q 044609 156 KVLIGCDGVH 165 (232)
Q Consensus 156 ~~vV~A~G~~ 165 (232)
+-||+.+|-+
T Consensus 176 ~~VilTTGTF 185 (679)
T KOG2311|consen 176 ESVILTTGTF 185 (679)
T ss_pred ceEEEeeccc
Confidence 9999999976
No 229
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.74 E-value=7.2e-08 Score=77.63 Aligned_cols=104 Identities=16% Similarity=0.281 Sum_probs=65.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT 83 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (232)
.+|+|||||+||+++|..|.+. ..+|+||++++........ +...+ ..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~---------------l~~~~---------------~~ 52 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPD---------------LSHVF---------------SQ 52 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCc---------------CcHHH---------------hC
Confidence 4899999999999999999875 4689999987643111000 00000 00
Q ss_pred CceeEEeccCCCCCCCCceeeeehHHH----HHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEE
Q 044609 84 GATQELSYAGKSGRIGSGLRSVHRQSL----LEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLI 159 (232)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV 159 (232)
......+ .+.+.+.. +++++.+++|+++..+. . .+.+ ++.++.+|.||
T Consensus 53 --------------------~~~~~~~~~~~~~~~~~~~-gv~~~~~~~V~~id~~~---~---~v~~-~~~~~~yd~LV 104 (377)
T PRK04965 53 --------------------GQRADDLTRQSAGEFAEQF-NLRLFPHTWVTDIDAEA---Q---VVKS-QGNQWQYDKLV 104 (377)
T ss_pred --------------------CCCHHHhhcCCHHHHHHhC-CCEEECCCEEEEEECCC---C---EEEE-CCeEEeCCEEE
Confidence 0000111 11222222 78999999999997653 2 2333 56679999999
Q ss_pred ecCCCchh
Q 044609 160 GCDGVHSM 167 (232)
Q Consensus 160 ~A~G~~S~ 167 (232)
+|+|....
T Consensus 105 lATG~~~~ 112 (377)
T PRK04965 105 LATGASAF 112 (377)
T ss_pred ECCCCCCC
Confidence 99998753
No 230
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.74 E-value=1.5e-07 Score=71.61 Aligned_cols=35 Identities=34% Similarity=0.577 Sum_probs=31.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
.|+|||+|.|||+++..+-..|-.|+++|+....+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~G 45 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIG 45 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcC
Confidence 69999999999999999998876799999998764
No 231
>PRK07208 hypothetical protein; Provisional
Probab=98.74 E-value=1.8e-08 Score=83.67 Aligned_cols=39 Identities=41% Similarity=0.494 Sum_probs=35.7
Q ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
|+..||+|||||++||++|+.|+++|++|+|+|+.+..+
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G 40 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG 40 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 356799999999999999999999999999999988764
No 232
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.73 E-value=2.7e-07 Score=78.67 Aligned_cols=33 Identities=36% Similarity=0.598 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
+|||+|||+|++|..+|..+++.|.+|+|||++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 589999999999999999999999999999975
No 233
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.72 E-value=2.3e-07 Score=76.78 Aligned_cols=100 Identities=23% Similarity=0.362 Sum_probs=74.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+... +
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~----------------------- 214 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF------------------L----------------------- 214 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------C-----------------------
Confidence 58999999999999999999999999999987533100 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
.. -....+.+.|.+. +++++.+++|+++..++ .. +.+.+.+|+++.+|.||.|+|..
T Consensus 215 -------------d~----~~~~~l~~~l~~~--gI~v~~~~~v~~i~~~~---~~-~~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 215 -------------DD----EISDALSYHLRDS--GVTIRHNEEVEKVEGGD---DG-VIVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred -------------CH----HHHHHHHHHHHHc--CCEEEECCEEEEEEEeC---Ce-EEEEECCCCEEEeCEEEEeecCC
Confidence 00 0122344445433 89999999999998653 33 66677788889999999999998
Q ss_pred hhhh
Q 044609 166 SMVA 169 (232)
Q Consensus 166 S~~r 169 (232)
++..
T Consensus 272 p~~~ 275 (461)
T PRK05249 272 GNTD 275 (461)
T ss_pred cccc
Confidence 7643
No 234
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.2e-07 Score=67.06 Aligned_cols=115 Identities=19% Similarity=0.239 Sum_probs=74.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT 83 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (232)
+...|+|||+||++-++|++++|..+|.+++|-.-.-+.. ..
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~--------------------------------------pG 48 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIA--------------------------------------PG 48 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcC--------------------------------------CC
Confidence 3458999999999999999999999999999953221111 01
Q ss_pred Cce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEe
Q 044609 84 GAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG 160 (232)
Q Consensus 84 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~ 160 (232)
+.+ ...+....++ .+. -+.-.+|.+.++++.. |.+++.. .|.++... +.. +.+.+ |.+.+.||.||.
T Consensus 49 GQLtTTT~veNfPG--FPd--gi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~s---skp-F~l~t-d~~~v~~~avI~ 118 (322)
T KOG0404|consen 49 GQLTTTTDVENFPG--FPD--GITGPELMDKMRKQSERFGTEIITE-TVSKVDLS---SKP-FKLWT-DARPVTADAVIL 118 (322)
T ss_pred ceeeeeeccccCCC--CCc--ccccHHHHHHHHHHHHhhcceeeee-ehhhcccc---CCC-eEEEe-cCCceeeeeEEE
Confidence 111 1111122222 111 3456678888887764 5566654 56677665 344 65554 555699999999
Q ss_pred cCCCch
Q 044609 161 CDGVHS 166 (232)
Q Consensus 161 A~G~~S 166 (232)
|+|+..
T Consensus 119 atGAsA 124 (322)
T KOG0404|consen 119 ATGASA 124 (322)
T ss_pred ecccce
Confidence 999864
No 235
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.72 E-value=1.6e-07 Score=77.67 Aligned_cols=32 Identities=34% Similarity=0.617 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
||+|||+|++|+.+|..+++.|.+|+++||..
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 89999999999999999999999999999875
No 236
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.72 E-value=2.1e-07 Score=75.38 Aligned_cols=98 Identities=21% Similarity=0.250 Sum_probs=72.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|..|+-+|..|++.|.+|+++|+.+.+... . .
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------~---------------------~--- 184 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR----------------N---------------------A--- 184 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh----------------h---------------------c---
Confidence 57999999999999999999999999999987643100 0 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
++ .....+.+.+.+. +++++++++|+++..+ +. +.+.+.+|+++.||+||.|.|..
T Consensus 185 -------------~~----~~~~~l~~~l~~~--GV~i~~~~~V~~i~~~---~~--~~v~l~~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 185 -------------PP----PVQRYLLQRHQQA--GVRILLNNAIEHVVDG---EK--VELTLQSGETLQADVVIYGIGIS 240 (396)
T ss_pred -------------CH----HHHHHHHHHHHHC--CCEEEeCCeeEEEEcC---CE--EEEEECCCCEEECCEEEECCCCC
Confidence 00 0112233444432 8999999999998752 23 66778899999999999999987
Q ss_pred hh
Q 044609 166 SM 167 (232)
Q Consensus 166 S~ 167 (232)
.+
T Consensus 241 pn 242 (396)
T PRK09754 241 AN 242 (396)
T ss_pred hh
Confidence 64
No 237
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.72 E-value=5.4e-08 Score=78.00 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=64.6
Q ss_pred cEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609 7 DVVIIGAGIAGLATAVALRRL---GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT 83 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~---g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (232)
+|+|||||++|+.+|..|.++ +.+|+|||+.+...... . + ..+. .
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~-------~----~------~~~~---------------~ 48 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSG-------M----L------PGMI---------------A 48 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccc-------h----h------hHHH---------------h
Confidence 489999999999999999754 68999999876532111 0 0 0000 0
Q ss_pred CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCC
Q 044609 84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDG 163 (232)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G 163 (232)
+ .. ........ +.+.+.+ .+++++.+ +|+++..++ -.|.+.+|+++.+|+||+|+|
T Consensus 49 g---~~---------~~~~~~~~---~~~~~~~--~gv~~~~~-~v~~id~~~------~~V~~~~g~~~~yD~LviAtG 104 (364)
T TIGR03169 49 G---HY---------SLDEIRID---LRRLARQ--AGARFVIA-EATGIDPDR------RKVLLANRPPLSYDVLSLDVG 104 (364)
T ss_pred e---eC---------CHHHhccc---HHHHHHh--cCCEEEEE-EEEEEeccc------CEEEECCCCcccccEEEEccC
Confidence 0 00 00000011 1122222 27887765 788887653 346678888899999999999
Q ss_pred Cchh
Q 044609 164 VHSM 167 (232)
Q Consensus 164 ~~S~ 167 (232)
....
T Consensus 105 ~~~~ 108 (364)
T TIGR03169 105 STTP 108 (364)
T ss_pred CCCC
Confidence 7653
No 238
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.71 E-value=1.1e-07 Score=77.69 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=31.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
+.+|+|||||.+|+.+|..|.+.+.+|+|||+.+..
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 469999999999999999998778999999987643
No 239
>PRK06116 glutathione reductase; Validated
Probab=98.71 E-value=3e-07 Score=75.82 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=74.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~----------------------- 206 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG------------------F----------------------- 206 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc------------------c-----------------------
Confidence 58999999999999999999999999999986533100 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
.. -....+.+.|.+. +++++++++|.+++.++ +.. +.+.+.+|+++.||.||.|+|..
T Consensus 207 -------------~~----~~~~~l~~~L~~~--GV~i~~~~~V~~i~~~~--~g~-~~v~~~~g~~i~~D~Vv~a~G~~ 264 (450)
T PRK06116 207 -------------DP----DIRETLVEEMEKK--GIRLHTNAVPKAVEKNA--DGS-LTLTLEDGETLTVDCLIWAIGRE 264 (450)
T ss_pred -------------CH----HHHHHHHHHHHHC--CcEEECCCEEEEEEEcC--Cce-EEEEEcCCcEEEeCEEEEeeCCC
Confidence 00 0122334444433 89999999999998754 232 55777888899999999999987
Q ss_pred hhh
Q 044609 166 SMV 168 (232)
Q Consensus 166 S~~ 168 (232)
...
T Consensus 265 p~~ 267 (450)
T PRK06116 265 PNT 267 (450)
T ss_pred cCC
Confidence 654
No 240
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.70 E-value=3e-07 Score=76.03 Aligned_cols=100 Identities=20% Similarity=0.298 Sum_probs=73.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||||++|+-+|..|++.|.+|+++|+.+.+... .
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------~----------------------- 209 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG------------------E----------------------- 209 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC------------------C-----------------------
Confidence 58999999999999999999999999999987532000 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC--cEEEccEEEecCC
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS--TIIKAKVLIGCDG 163 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g--~~~~a~~vV~A~G 163 (232)
.. -....+.+.|.+. +++++.+++|.+++.++ .. +.+.+.+| .++.+|.||.|+|
T Consensus 210 -------------~~----~~~~~~~~~l~~~--gi~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~i~~D~vi~a~G 266 (461)
T TIGR01350 210 -------------DA----EVSKVVAKALKKK--GVKILTNTKVTAVEKND---DQ-VVYENKGGETETLTGEKVLVAVG 266 (461)
T ss_pred -------------CH----HHHHHHHHHHHHc--CCEEEeCCEEEEEEEeC---CE-EEEEEeCCcEEEEEeCEEEEecC
Confidence 00 0012234444443 79999999999997653 33 55666666 4799999999999
Q ss_pred Cchhhh
Q 044609 164 VHSMVA 169 (232)
Q Consensus 164 ~~S~~r 169 (232)
..+...
T Consensus 267 ~~p~~~ 272 (461)
T TIGR01350 267 RKPNTE 272 (461)
T ss_pred CcccCC
Confidence 987654
No 241
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.68 E-value=1.4e-07 Score=82.45 Aligned_cols=106 Identities=13% Similarity=0.156 Sum_probs=68.1
Q ss_pred EEEECCCHHHHHHHHHHHhC---CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609 8 VVIIGAGIAGLATAVALRRL---GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84 (232)
Q Consensus 8 V~IvG~G~~G~~~A~~L~~~---g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (232)
|+|||+|++|+.+|..|.+. +++|+|||+.+.+..... .+.. +. .+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~---------------~L~~-~l---------------~g 49 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRI---------------LLSS-VL---------------QG 49 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccc---------------cccH-HH---------------CC
Confidence 68999999999999998774 579999998876521100 0000 00 00
Q ss_pred ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609 85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV 164 (232)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~ 164 (232)
.. ... ...+.. .+++.+ .+++++.+++|+++..+. ..|.+.+|.++.+|.||+|+|.
T Consensus 50 ~~---~~~---------~l~~~~---~~~~~~--~gv~~~~g~~V~~Id~~~------k~V~~~~g~~~~yD~LVlATGs 106 (785)
T TIGR02374 50 EA---DLD---------DITLNS---KDWYEK--HGITLYTGETVIQIDTDQ------KQVITDAGRTLSYDKLILATGS 106 (785)
T ss_pred CC---CHH---------HccCCC---HHHHHH--CCCEEEcCCeEEEEECCC------CEEEECCCcEeeCCEEEECCCC
Confidence 00 000 000111 122332 279999999999997653 3466788888999999999998
Q ss_pred chh
Q 044609 165 HSM 167 (232)
Q Consensus 165 ~S~ 167 (232)
...
T Consensus 107 ~p~ 109 (785)
T TIGR02374 107 YPF 109 (785)
T ss_pred CcC
Confidence 754
No 242
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.68 E-value=8e-07 Score=69.19 Aligned_cols=38 Identities=37% Similarity=0.584 Sum_probs=34.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
.+|||+|||+||.|..+|+..++.|++.+++|++...+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LG 75 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLG 75 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccC
Confidence 46999999999999999999999999999999987653
No 243
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.67 E-value=2.2e-07 Score=74.18 Aligned_cols=37 Identities=54% Similarity=0.772 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCCCc
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLG-IKALVLEKSDGLR 41 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~~~ 41 (232)
..+|+|||||+||+++|..|-..| .+++|+|-.+..+
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG 58 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence 368999999999999999999765 5899999887764
No 244
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.66 E-value=3.7e-07 Score=75.55 Aligned_cols=99 Identities=18% Similarity=0.250 Sum_probs=72.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||||++|+-+|..|++.|.+|+++|+.+.+... +
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------~------------------------- 211 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG----------------E------------------------- 211 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc----------------C-------------------------
Confidence 57999999999999999999999999999987543100 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC---cEEEccEEEecC
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS---TIIKAKVLIGCD 162 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g---~~~~a~~vV~A~ 162 (232)
.. -....+.+.|.+. +++++.+++|++++.++ .. +.+.+.++ +++.+|.||.|.
T Consensus 212 -------------~~----~~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~---~~-v~v~~~~gg~~~~i~~D~vi~a~ 268 (462)
T PRK06416 212 -------------DK----EISKLAERALKKR--GIKIKTGAKAKKVEQTD---DG-VTVTLEDGGKEETLEADYVLVAV 268 (462)
T ss_pred -------------CH----HHHHHHHHHHHHc--CCEEEeCCEEEEEEEeC---CE-EEEEEEeCCeeEEEEeCEEEEee
Confidence 00 0012334444433 89999999999998753 33 55666555 579999999999
Q ss_pred CCchhh
Q 044609 163 GVHSMV 168 (232)
Q Consensus 163 G~~S~~ 168 (232)
|.....
T Consensus 269 G~~p~~ 274 (462)
T PRK06416 269 GRRPNT 274 (462)
T ss_pred CCccCC
Confidence 988654
No 245
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.65 E-value=5e-08 Score=76.33 Aligned_cols=154 Identities=18% Similarity=0.217 Sum_probs=92.6
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCCCcCcceeeeecccHHH--HHHHcCChHHHHhhccCceeeE
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLG-IKALVLEKSDGLRATGAALTLSPNAWL--ALDALGVSHKLTSVYAPAKRVF 77 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~~~~~~~~~~~~~~~~~--~l~~~g~~~~~~~~~~~~~~~~ 77 (232)
|.+..+|++.||-||+-|++|+.|...+ .+++.+||.+.+.-+... .+....++ .++.| -.-..|-....
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGm-llegstlQv~FlkDL------VTl~~PTs~yS 73 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGM-LLEGSTLQVPFLKDL------VTLVDPTSPYS 73 (436)
T ss_pred CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCc-ccCCccccccchhhh------ccccCCCCchH
Confidence 5667799999999999999999999874 789999999988655422 11111111 11111 11111110000
Q ss_pred EEEcCCCceeEEeccCCCC----CCCCceeeeehHHHHHHHhhhCCC-CeEEeCceEEEEEecCCCCCc-cEEEEeCCCc
Q 044609 78 VTNLGTGATQELSYAGKSG----RIGSGLRSVHRQSLLEALADELPD-DTIQFSSKIAAIDSQTLNGSS-AAIINLGDST 151 (232)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~-~~i~~~~~v~~i~~~~~~g~~-~~~v~~~~g~ 151 (232)
+ ++|-..++ .+......+.|.++.+++.-.+.. -.++++.+|++|..-+. +.. ...+.+.++.
T Consensus 74 F----------LNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~-d~~~~~~~~t~~~~ 142 (436)
T COG3486 74 F----------LNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDG-DAVVRLFVVTANGT 142 (436)
T ss_pred H----------HHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCC-cceeEEEEEcCCCc
Confidence 0 01111111 012334467788887777666542 47889999998844331 122 1336677888
Q ss_pred EEEccEEEecCCCchhhhhhh
Q 044609 152 IIKAKVLIGCDGVHSMVAQWL 172 (232)
Q Consensus 152 ~~~a~~vV~A~G~~S~~r~~~ 172 (232)
+++|+-||+..|....+...+
T Consensus 143 ~y~ar~lVlg~G~~P~IP~~f 163 (436)
T COG3486 143 VYRARNLVLGVGTQPYIPPCF 163 (436)
T ss_pred EEEeeeEEEccCCCcCCChHH
Confidence 999999999999877654333
No 246
>PRK07846 mycothione reductase; Reviewed
Probab=98.65 E-value=1.7e-07 Score=77.12 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=27.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
+|||+||||||+|.++|.. ..|.+|+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 4899999999999988865 4699999999853
No 247
>PRK07846 mycothione reductase; Reviewed
Probab=98.64 E-value=6.1e-07 Score=73.91 Aligned_cols=98 Identities=21% Similarity=0.374 Sum_probs=71.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||||+.|+-+|..|++.|.+|+++|+.+.+-.. .
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~------------------~----------------------- 205 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH------------------L----------------------- 205 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------c-----------------------
Confidence 68999999999999999999999999999986532100 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
... + +..+.+ +.+ .+++++.++++++++.++ .. +.+.+.+|+++.+|.|+.|+|..
T Consensus 206 -------------d~~---~-~~~l~~-l~~--~~v~i~~~~~v~~i~~~~---~~-v~v~~~~g~~i~~D~vl~a~G~~ 261 (451)
T PRK07846 206 -------------DDD---I-SERFTE-LAS--KRWDVRLGRNVVGVSQDG---SG-VTLRLDDGSTVEADVLLVATGRV 261 (451)
T ss_pred -------------CHH---H-HHHHHH-HHh--cCeEEEeCCEEEEEEEcC---CE-EEEEECCCcEeecCEEEEEECCc
Confidence 000 0 111222 222 268899999999997653 33 66777888899999999999998
Q ss_pred hhh
Q 044609 166 SMV 168 (232)
Q Consensus 166 S~~ 168 (232)
...
T Consensus 262 pn~ 264 (451)
T PRK07846 262 PNG 264 (451)
T ss_pred cCc
Confidence 754
No 248
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.63 E-value=5.1e-08 Score=81.22 Aligned_cols=36 Identities=42% Similarity=0.619 Sum_probs=33.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
.||+|||||++||++|..|+++|++|+|+|++..++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 589999999999999999999999999999998764
No 249
>PRK07233 hypothetical protein; Provisional
Probab=98.62 E-value=5.8e-08 Score=79.59 Aligned_cols=58 Identities=34% Similarity=0.507 Sum_probs=44.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceee---------------eecccHHHHHHHcCChH
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAAL---------------TLSPNAWLALDALGVSH 64 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~---------------~~~~~~~~~l~~~g~~~ 64 (232)
+|+|||||++||++|+.|+++|++|+|+|+.+.++....+. .-.++..+.++++|+.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~ 73 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLED 73 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCC
Confidence 59999999999999999999999999999998774322111 11234567778887643
No 250
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.62 E-value=7e-07 Score=73.56 Aligned_cols=100 Identities=21% Similarity=0.279 Sum_probs=74.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||||..|+-+|..|++.|.+|+++|+.+.+-.. +
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~------------------~----------------------- 205 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS------------------F----------------------- 205 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc------------------c-----------------------
Confidence 58999999999999999999999999999987543100 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC-cEEEccEEEecCCC
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS-TIIKAKVLIGCDGV 164 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g-~~~~a~~vV~A~G~ 164 (232)
.. -.+..+.+.|.+. +++++.+++|+++..+. +.. +.+.+.++ +++.+|.||.|.|.
T Consensus 206 -------------d~----~~~~~~~~~l~~~--gI~i~~~~~v~~i~~~~--~~~-~~v~~~~g~~~i~~D~vi~a~G~ 263 (450)
T TIGR01421 206 -------------DS----MISETITEEYEKE--GINVHKLSKPVKVEKTV--EGK-LVIHFEDGKSIDDVDELIWAIGR 263 (450)
T ss_pred -------------CH----HHHHHHHHHHHHc--CCEEEcCCEEEEEEEeC--Cce-EEEEECCCcEEEEcCEEEEeeCC
Confidence 00 0123344555443 89999999999998653 222 55667777 57999999999999
Q ss_pred chhh
Q 044609 165 HSMV 168 (232)
Q Consensus 165 ~S~~ 168 (232)
..+.
T Consensus 264 ~pn~ 267 (450)
T TIGR01421 264 KPNT 267 (450)
T ss_pred CcCc
Confidence 8764
No 251
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.62 E-value=7.1e-07 Score=73.36 Aligned_cols=98 Identities=16% Similarity=0.236 Sum_probs=70.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||||++|+.+|..|++.|.+|+++|+.+.+... .
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---------------------------------------~-- 196 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR---------------------------------------E-- 196 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC---------------------------------------C--
Confidence 58999999999999999999999999999987643100 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
.. -.+..+.+.|.+. +++++.+++|+++..++ .. +.+. .+++++.+|.||.|+|..
T Consensus 197 -------------~~----~~~~~~~~~l~~~--GI~i~~~~~V~~i~~~~---~~-v~v~-~~g~~i~~D~viva~G~~ 252 (438)
T PRK07251 197 -------------EP----SVAALAKQYMEED--GITFLLNAHTTEVKNDG---DQ-VLVV-TEDETYRFDALLYATGRK 252 (438)
T ss_pred -------------CH----HHHHHHHHHHHHc--CCEEEcCCEEEEEEecC---CE-EEEE-ECCeEEEcCEEEEeeCCC
Confidence 00 0012233444432 89999999999997643 33 4444 356689999999999987
Q ss_pred hhh
Q 044609 166 SMV 168 (232)
Q Consensus 166 S~~ 168 (232)
...
T Consensus 253 p~~ 255 (438)
T PRK07251 253 PNT 255 (438)
T ss_pred CCc
Confidence 653
No 252
>PLN02576 protoporphyrinogen oxidase
Probab=98.60 E-value=8.3e-08 Score=80.09 Aligned_cols=38 Identities=42% Similarity=0.677 Sum_probs=35.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRL-GIKALVLEKSDGLR 41 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~-g~~v~viE~~~~~~ 41 (232)
.++||+|||||++||++|+.|+++ |++|+|+|+.+.++
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 357999999999999999999999 99999999998774
No 253
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.58 E-value=1.3e-06 Score=72.24 Aligned_cols=100 Identities=21% Similarity=0.297 Sum_probs=70.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||||++|+-+|..|++.|.+|+++|+.+.+...
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~------------------------------------------ 208 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG------------------------------------------ 208 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc------------------------------------------
Confidence 58999999999999999999999999999987533100
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC-cEEEccEEEecCCC
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS-TIIKAKVLIGCDGV 164 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g-~~~~a~~vV~A~G~ 164 (232)
. ... -+..+.+.|.+. +++++++++|++++.++ .. +.+...++ .++.+|.||.|+|.
T Consensus 209 ---~---------d~e----~~~~l~~~L~~~--GI~i~~~~~V~~i~~~~---~~-v~~~~~g~~~~i~~D~vivA~G~ 266 (458)
T PRK06912 209 ---E---------DED----IAHILREKLEND--GVKIFTGAALKGLNSYK---KQ-ALFEYEGSIQEVNAEFVLVSVGR 266 (458)
T ss_pred ---c---------cHH----HHHHHHHHHHHC--CCEEEECCEEEEEEEcC---CE-EEEEECCceEEEEeCEEEEecCC
Confidence 0 000 122344455443 89999999999997653 33 44443322 36899999999998
Q ss_pred chhhh
Q 044609 165 HSMVA 169 (232)
Q Consensus 165 ~S~~r 169 (232)
.+++.
T Consensus 267 ~p~~~ 271 (458)
T PRK06912 267 KPRVQ 271 (458)
T ss_pred ccCCC
Confidence 87653
No 254
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.58 E-value=6.9e-08 Score=79.89 Aligned_cols=34 Identities=41% Similarity=0.673 Sum_probs=32.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
.+|||+||||||+|+++|..|++.|.+|+|||++
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3599999999999999999999999999999986
No 255
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.58 E-value=1.9e-07 Score=76.90 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=27.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
+|||+|||+||+|..+|. +..|.+|+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence 599999999999998864 44799999999853
No 256
>PLN02507 glutathione reductase
Probab=98.58 E-value=1.1e-06 Score=73.35 Aligned_cols=99 Identities=11% Similarity=0.135 Sum_probs=73.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+-.. .
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~----------------------- 242 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG------------------F----------------------- 242 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc------------------c-----------------------
Confidence 58999999999999999999999999999986532100 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
.. -.+..+.+.|.+. +++++.+++|++++.++ .. +.+.+.+|+++.+|.|+.|.|..
T Consensus 243 -------------d~----~~~~~l~~~l~~~--GI~i~~~~~V~~i~~~~---~~-~~v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 243 -------------DD----EMRAVVARNLEGR--GINLHPRTNLTQLTKTE---GG-IKVITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred -------------CH----HHHHHHHHHHHhC--CCEEEeCCEEEEEEEeC---Ce-EEEEECCCcEEEcCEEEEeecCC
Confidence 00 0123344455443 89999999999998653 33 66777788889999999999987
Q ss_pred hhh
Q 044609 166 SMV 168 (232)
Q Consensus 166 S~~ 168 (232)
...
T Consensus 300 pn~ 302 (499)
T PLN02507 300 PNT 302 (499)
T ss_pred CCC
Confidence 654
No 257
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.57 E-value=1.2e-06 Score=72.76 Aligned_cols=101 Identities=19% Similarity=0.281 Sum_probs=71.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||||++|+-+|..|++.|.+|+++|+.+.+...
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~------------------------------------------ 218 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT------------------------------------------ 218 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc------------------------------------------
Confidence 58999999999999999999999999999987643100
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCc--EEEccEEEecCC
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDST--IIKAKVLIGCDG 163 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~--~~~a~~vV~A~G 163 (232)
. .. -....+.+.|.+. +++++.+++|+++....+ +.. ..+.+.+|+ ++.+|.||.|.|
T Consensus 219 ---~---------~~----~~~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~-~~~-~~~~~~~g~~~~i~~D~vi~a~G 278 (472)
T PRK05976 219 ---E---------DA----ELSKEVARLLKKL--GVRVVTGAKVLGLTLKKD-GGV-LIVAEHNGEEKTLEADKVLVSVG 278 (472)
T ss_pred ---C---------CH----HHHHHHHHHHHhc--CCEEEeCcEEEEEEEecC-CCE-EEEEEeCCceEEEEeCEEEEeeC
Confidence 0 00 0112334444433 899999999999975211 232 344455663 699999999999
Q ss_pred Cchhh
Q 044609 164 VHSMV 168 (232)
Q Consensus 164 ~~S~~ 168 (232)
.....
T Consensus 279 ~~p~~ 283 (472)
T PRK05976 279 RRPNT 283 (472)
T ss_pred CccCC
Confidence 97654
No 258
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.57 E-value=1.1e-06 Score=72.33 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=72.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------------------------------ 204 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG------------------------------------------ 204 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc------------------------------------------
Confidence 57999999999999999999999999999986532000
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
+ .. -.+..+.+.|.+. +++++.+++|.++...+ .. ..+.+.+++++.+|.||.|.|..
T Consensus 205 ---~---------d~----~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~---~~-~~v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 205 ---F---------DD----DMRALLARNMEGR--GIRIHPQTSLTSITKTD---DG-LKVTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred ---c---------CH----HHHHHHHHHHHHC--CCEEEeCCEEEEEEEcC---Ce-EEEEEcCCcEeecCEEEEeeCCC
Confidence 0 00 0122334444433 89999999999997653 23 55667788889999999999987
Q ss_pred hhh
Q 044609 166 SMV 168 (232)
Q Consensus 166 S~~ 168 (232)
...
T Consensus 263 pn~ 265 (446)
T TIGR01424 263 PNT 265 (446)
T ss_pred cCC
Confidence 654
No 259
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.57 E-value=1.2e-06 Score=72.62 Aligned_cols=99 Identities=18% Similarity=0.308 Sum_probs=73.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+++|||+|..|+-+|..|++.|.+|+++++.+.+....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~----------------------------------------- 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE----------------------------------------- 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC-----------------------------------------
Confidence 479999999999999999999999999999865431100
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
. .-....+.+.|.+. +++++.++++.+++.++ .. +.+.+.+|+++.+|.|+.|.|..
T Consensus 217 -------------d----~~~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~---~~-~~v~~~~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 217 -------------D----ADAAEVLEEVFARR--GMTVLKRSRAESVERTG---DG-VVVTLTDGRTVEGSHALMAVGSV 273 (466)
T ss_pred -------------C----HHHHHHHHHHHHHC--CcEEEcCCEEEEEEEeC---CE-EEEEECCCcEEEecEEEEeecCC
Confidence 0 00122334444433 89999999999997653 33 66777788899999999999987
Q ss_pred hhh
Q 044609 166 SMV 168 (232)
Q Consensus 166 S~~ 168 (232)
.+.
T Consensus 274 pn~ 276 (466)
T PRK07845 274 PNT 276 (466)
T ss_pred cCC
Confidence 654
No 260
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.56 E-value=1.1e-06 Score=72.77 Aligned_cols=99 Identities=20% Similarity=0.304 Sum_probs=70.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|..|+-+|..|++.|.+|+++|+.+.+-...
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~----------------------------------------- 211 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNE----------------------------------------- 211 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCcc-----------------------------------------
Confidence 589999999999999999999999999999765331000
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEe--CCC--cEEEccEEEec
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINL--GDS--TIIKAKVLIGC 161 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~--~~g--~~~~a~~vV~A 161 (232)
. .-....+.+.|.+. +++++.+++|+++..++ .. +.+.+ .+| +++.+|.||.|
T Consensus 212 -------------d----~~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~---~~-~~v~~~~~~g~~~~i~~D~vi~a 268 (466)
T PRK07818 212 -------------D----AEVSKEIAKQYKKL--GVKILTGTKVESIDDNG---SK-VTVTVSKKDGKAQELEADKVLQA 268 (466)
T ss_pred -------------C----HHHHHHHHHHHHHC--CCEEEECCEEEEEEEeC---Ce-EEEEEEecCCCeEEEEeCEEEEC
Confidence 0 00122334445443 89999999999997653 33 44444 356 37999999999
Q ss_pred CCCchhh
Q 044609 162 DGVHSMV 168 (232)
Q Consensus 162 ~G~~S~~ 168 (232)
.|...+.
T Consensus 269 ~G~~pn~ 275 (466)
T PRK07818 269 IGFAPRV 275 (466)
T ss_pred cCcccCC
Confidence 9988764
No 261
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.56 E-value=1e-07 Score=72.56 Aligned_cols=36 Identities=33% Similarity=0.663 Sum_probs=33.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
|+|||+|||||++|++||+.|+++|.++.||.++-.
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 469999999999999999999999999999998754
No 262
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.56 E-value=1.6e-07 Score=77.77 Aligned_cols=60 Identities=28% Similarity=0.410 Sum_probs=45.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce------e----------eeecccHHHHHHHcCChHHH
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA------A----------LTLSPNAWLALDALGVSHKL 66 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~------~----------~~~~~~~~~~l~~~g~~~~~ 66 (232)
+|+|||||++|+++|+.|+++|++|+|+|+.+.++...+ + ....++..+.++++|+.+.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~ 76 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL 76 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence 589999999999999999999999999999887642111 1 01234567788888886554
No 263
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=1e-07 Score=77.09 Aligned_cols=36 Identities=42% Similarity=0.567 Sum_probs=33.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA 42 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~ 42 (232)
+|+|+|||+|||++|+.|+++|++|+|+|+++.++.
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 699999999999999999999999999999998753
No 264
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.56 E-value=1e-07 Score=75.90 Aligned_cols=35 Identities=37% Similarity=0.633 Sum_probs=32.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
+||+|||||++|+++|..|++.|.+|+|+|+++..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 59999999999999999999999999999997654
No 265
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.56 E-value=1.5e-06 Score=70.85 Aligned_cols=100 Identities=23% Similarity=0.367 Sum_probs=75.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
..++|||||+.|+-+|..+++.|.+|+|+|+.+.+-+. ..+
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~------------------~D~--------------------- 214 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG------------------EDP--------------------- 214 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc------------------CCH---------------------
Confidence 57999999999999999999999999999998754111 000
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCc--EEEccEEEecCC
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDST--IIKAKVLIGCDG 163 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~--~~~a~~vV~A~G 163 (232)
--...+.+.|.+ .+++++.+++++.++..+ .. +.+.+.+|. ++++|.|+.|.|
T Consensus 215 -------------------ei~~~~~~~l~~--~gv~i~~~~~v~~~~~~~---~~-v~v~~~~g~~~~~~ad~vLvAiG 269 (454)
T COG1249 215 -------------------EISKELTKQLEK--GGVKILLNTKVTAVEKKD---DG-VLVTLEDGEGGTIEADAVLVAIG 269 (454)
T ss_pred -------------------HHHHHHHHHHHh--CCeEEEccceEEEEEecC---Ce-EEEEEecCCCCEEEeeEEEEccC
Confidence 012334445554 478999999999998764 33 667777765 789999999999
Q ss_pred Cchhhh
Q 044609 164 VHSMVA 169 (232)
Q Consensus 164 ~~S~~r 169 (232)
+..++-
T Consensus 270 R~Pn~~ 275 (454)
T COG1249 270 RKPNTD 275 (454)
T ss_pred CccCCC
Confidence 987654
No 266
>PLN02268 probable polyamine oxidase
Probab=98.55 E-value=1.1e-07 Score=78.16 Aligned_cols=36 Identities=42% Similarity=0.650 Sum_probs=33.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
.+|+|||||++||++|+.|.+.|++|+|+|+++..+
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~G 36 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIG 36 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 379999999999999999999999999999988764
No 267
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.52 E-value=1.2e-07 Score=78.45 Aligned_cols=33 Identities=36% Similarity=0.591 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
|||+||||||+|+++|..+++.|++|+|+||..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 799999999999999999999999999999865
No 268
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.52 E-value=1.3e-07 Score=83.48 Aligned_cols=36 Identities=39% Similarity=0.532 Sum_probs=33.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.++|+||||||||+++|+.|+++|++|+|+|+.+.+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 379999999999999999999999999999998765
No 269
>PRK02106 choline dehydrogenase; Validated
Probab=98.52 E-value=1.2e-07 Score=80.08 Aligned_cols=38 Identities=39% Similarity=0.521 Sum_probs=35.6
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHh-CCCcEEEEecCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRR-LGIKALVLEKSD 38 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~-~g~~v~viE~~~ 38 (232)
|.+.+||+||||+|++|+.+|..|++ .|++|+|||+++
T Consensus 1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 66678999999999999999999999 799999999995
No 270
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.52 E-value=1.5e-06 Score=72.00 Aligned_cols=99 Identities=26% Similarity=0.367 Sum_probs=70.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|.+|+-+|..|++.|.+|+++|+.+.+-..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 204 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR------------------------------------------ 204 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc------------------------------------------
Confidence 58999999999999999999999999999987543100
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC--C-CcEEEccEEEecC
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG--D-STIIKAKVLIGCD 162 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~--~-g~~~~a~~vV~A~ 162 (232)
. .+ -....+.+.|.+. +++++++++|++++.++ .. ..+.+. + ++++.+|.||.|.
T Consensus 205 ---~---------d~----~~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~---~~-~~v~~~~~~~~~~i~~D~ViiA~ 262 (463)
T TIGR02053 205 ---E---------EP----EISAAVEEALAEE--GIEVVTSAQVKAVSVRG---GG-KIITVEKPGGQGEVEADELLVAT 262 (463)
T ss_pred ---c---------CH----HHHHHHHHHHHHc--CCEEEcCcEEEEEEEcC---CE-EEEEEEeCCCceEEEeCEEEEeE
Confidence 0 00 0012334444432 89999999999998653 22 334432 2 3579999999999
Q ss_pred CCchhh
Q 044609 163 GVHSMV 168 (232)
Q Consensus 163 G~~S~~ 168 (232)
|..+..
T Consensus 263 G~~p~~ 268 (463)
T TIGR02053 263 GRRPNT 268 (463)
T ss_pred CCCcCC
Confidence 987654
No 271
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.52 E-value=9.7e-08 Score=74.30 Aligned_cols=34 Identities=38% Similarity=0.536 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLG-IKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~ 39 (232)
||+||||+|++|+.+|..|++.+ .+|+|||+++.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 79999999999999999999987 79999999875
No 272
>PLN02487 zeta-carotene desaturase
Probab=98.51 E-value=2.8e-07 Score=77.41 Aligned_cols=62 Identities=31% Similarity=0.422 Sum_probs=48.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc--------ce----eee----ecccHHHHHHHcCChHHHH
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT--------GA----ALT----LSPNAWLALDALGVSHKLT 67 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~--------~~----~~~----~~~~~~~~l~~~g~~~~~~ 67 (232)
.+|+|||||++|+++|+.|++.|++|+|+|+.+..+.. +. |.+ ..++..+.++++|+.+.+.
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~ 153 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 153 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence 59999999999999999999999999999998876421 11 111 2356788899999876643
No 273
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.51 E-value=2.2e-06 Score=70.64 Aligned_cols=98 Identities=21% Similarity=0.366 Sum_probs=70.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+++|||+|+.|+-+|..|++.|.+|+++|+.+.+... +
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~----------------~------------------------- 208 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH----------------L------------------------- 208 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc----------------c-------------------------
Confidence 58999999999999999999999999999986432000 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
... + ...+.+ +.+ .+++++.+++|++++.++ .. +.+.+.+|+++.+|.|+.|.|..
T Consensus 209 -------------d~~---~-~~~l~~-~~~--~gI~i~~~~~V~~i~~~~---~~-v~v~~~~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 209 -------------DED---I-SDRFTE-IAK--KKWDIRLGRNVTAVEQDG---DG-VTLTLDDGSTVTADVLLVATGRV 264 (452)
T ss_pred -------------CHH---H-HHHHHH-HHh--cCCEEEeCCEEEEEEEcC---Ce-EEEEEcCCCEEEcCEEEEeeccC
Confidence 000 0 112222 222 268999999999998653 33 66777788889999999999987
Q ss_pred hhh
Q 044609 166 SMV 168 (232)
Q Consensus 166 S~~ 168 (232)
...
T Consensus 265 pn~ 267 (452)
T TIGR03452 265 PNG 267 (452)
T ss_pred cCC
Confidence 643
No 274
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.50 E-value=1.9e-06 Score=68.80 Aligned_cols=109 Identities=21% Similarity=0.241 Sum_probs=67.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL 81 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 81 (232)
+...|+|||||.+|+.+|..|.++- .+|++|||...-.-.. .|.+. .
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~p-----------lL~ev---------a----------- 50 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTP-----------LLYEV---------A----------- 50 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccch-----------hhhhh---------h-----------
Confidence 3468999999999999999999975 8899999987532110 01100 0
Q ss_pred CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609 82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC 161 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A 161 (232)
.+.. .... ....+.+.+. ...++++..+ +|++|..++ -.|.+.++..+.+|++|+|
T Consensus 51 -~g~l------------~~~~---i~~p~~~~~~-~~~~v~~~~~-~V~~ID~~~------k~V~~~~~~~i~YD~LVva 106 (405)
T COG1252 51 -TGTL------------SESE---IAIPLRALLR-KSGNVQFVQG-EVTDIDRDA------KKVTLADLGEISYDYLVVA 106 (405)
T ss_pred -cCCC------------Chhh---eeccHHHHhc-ccCceEEEEE-EEEEEcccC------CEEEeCCCccccccEEEEe
Confidence 0000 0000 0111222222 2224566654 799998764 3466777778999999999
Q ss_pred CCCchh
Q 044609 162 DGVHSM 167 (232)
Q Consensus 162 ~G~~S~ 167 (232)
.|..+.
T Consensus 107 lGs~~~ 112 (405)
T COG1252 107 LGSETN 112 (405)
T ss_pred cCCcCC
Confidence 998764
No 275
>PRK06370 mercuric reductase; Validated
Probab=98.48 E-value=2.7e-06 Score=70.41 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=70.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------------------------------ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR------------------------------------------ 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc------------------------------------------
Confidence 58999999999999999999999999999987643100
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC-CcEEEccEEEecCCC
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD-STIIKAKVLIGCDGV 164 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-g~~~~a~~vV~A~G~ 164 (232)
. .. -.+..+.+.|.+ .+++++++++|.+++.++ +...+.+...+ +.++.+|.||.|.|.
T Consensus 210 ---~---------~~----~~~~~l~~~l~~--~GV~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 210 ---E---------DE----DVAAAVREILER--EGIDVRLNAECIRVERDG--DGIAVGLDCNGGAPEITGSHILVAVGR 269 (463)
T ss_pred ---c---------CH----HHHHHHHHHHHh--CCCEEEeCCEEEEEEEcC--CEEEEEEEeCCCceEEEeCEEEECcCC
Confidence 0 00 001233444443 289999999999998653 22113333333 457999999999998
Q ss_pred chhh
Q 044609 165 HSMV 168 (232)
Q Consensus 165 ~S~~ 168 (232)
..+.
T Consensus 270 ~pn~ 273 (463)
T PRK06370 270 VPNT 273 (463)
T ss_pred CcCC
Confidence 7654
No 276
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.48 E-value=2.6e-06 Score=70.79 Aligned_cols=99 Identities=22% Similarity=0.314 Sum_probs=70.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|..|+-+|..|++.|.+|+++|+.+.+... .
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~----------------------- 222 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA------------------A----------------------- 222 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc------------------C-----------------------
Confidence 58999999999999999999999999999986533100 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC--C--cEEEccEEEec
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD--S--TIIKAKVLIGC 161 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~--g--~~~~a~~vV~A 161 (232)
. .-....+.+.|.+ .+++++.+++|+++..++ .. +.+.+.+ | .++.+|.|+.|
T Consensus 223 -------------d----~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~~---~~-v~v~~~~~~g~~~~i~~D~vl~a 279 (475)
T PRK06327 223 -------------D----EQVAKEAAKAFTK--QGLDIHLGVKIGEIKTGG---KG-VSVAYTDADGEAQTLEVDKLIVS 279 (475)
T ss_pred -------------C----HHHHHHHHHHHHH--cCcEEEeCcEEEEEEEcC---CE-EEEEEEeCCCceeEEEcCEEEEc
Confidence 0 0011233344443 389999999999998653 23 4455443 3 46999999999
Q ss_pred CCCchhh
Q 044609 162 DGVHSMV 168 (232)
Q Consensus 162 ~G~~S~~ 168 (232)
.|..+..
T Consensus 280 ~G~~p~~ 286 (475)
T PRK06327 280 IGRVPNT 286 (475)
T ss_pred cCCccCC
Confidence 9988754
No 277
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.48 E-value=2.9e-06 Score=70.41 Aligned_cols=100 Identities=15% Similarity=0.174 Sum_probs=71.5
Q ss_pred ccEEEECCCHHHHHHHHHHHh---CCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609 6 EDVVIIGAGIAGLATAVALRR---LGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG 82 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~---~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (232)
.+|+|||||+.|+-+|..++. .|.+|+|+|+.+.+-..
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~--------------------------------------- 228 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG--------------------------------------- 228 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc---------------------------------------
Confidence 579999999999999977654 48999999987643100
Q ss_pred CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609 83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD 162 (232)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~ 162 (232)
+ .+ --+..+.+.|.+. +++++.+++|+++..++ +.. ..+.+.+++++.+|.|+.|.
T Consensus 229 ------~---------d~----~~~~~l~~~L~~~--GI~i~~~~~v~~i~~~~--~~~-~~v~~~~g~~i~~D~vl~a~ 284 (486)
T TIGR01423 229 ------F---------DS----TLRKELTKQLRAN--GINIMTNENPAKVTLNA--DGS-KHVTFESGKTLDVDVVMMAI 284 (486)
T ss_pred ------c---------CH----HHHHHHHHHHHHc--CCEEEcCCEEEEEEEcC--Cce-EEEEEcCCCEEEcCEEEEee
Confidence 0 00 0123344555443 89999999999998653 222 55666778889999999999
Q ss_pred CCchhh
Q 044609 163 GVHSMV 168 (232)
Q Consensus 163 G~~S~~ 168 (232)
|...+.
T Consensus 285 G~~Pn~ 290 (486)
T TIGR01423 285 GRVPRT 290 (486)
T ss_pred CCCcCc
Confidence 987654
No 278
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.48 E-value=2.2e-06 Score=70.24 Aligned_cols=97 Identities=22% Similarity=0.369 Sum_probs=70.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|++|+-+|..|++.|.+|+++++.+.+...
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~------------------------------------------ 175 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK------------------------------------------ 175 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc------------------------------------------
Confidence 58999999999999999999999999999986532000
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
.+ .. -....+.+.|.+. +++++++++|.++..+ +. + +.+.+|+++.+|.||.|+|..
T Consensus 176 --~~---------~~----~~~~~~~~~l~~~--gV~v~~~~~v~~i~~~---~~--~-v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 176 --LF---------DE----EMNQIVEEELKKH--EINLRLNEEVDSIEGE---ER--V-KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred --cc---------CH----HHHHHHHHHHHHc--CCEEEeCCEEEEEecC---CC--E-EEEcCCCEEEeCEEEECCCcc
Confidence 00 00 0122334444433 8999999999999754 22 3 456678889999999999987
Q ss_pred hh
Q 044609 166 SM 167 (232)
Q Consensus 166 S~ 167 (232)
..
T Consensus 233 p~ 234 (427)
T TIGR03385 233 PN 234 (427)
T ss_pred CC
Confidence 53
No 279
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.48 E-value=2.6e-06 Score=70.59 Aligned_cols=100 Identities=22% Similarity=0.360 Sum_probs=70.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (232)
..+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+-..
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~----------------------------------------- 212 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG----------------------------------------- 212 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-----------------------------------------
Confidence 368999999999999999999999999999986533100
Q ss_pred ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC---C--CcEEEccEEE
Q 044609 85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG---D--STIIKAKVLI 159 (232)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~--g~~~~a~~vV 159 (232)
+ .. -.+..+.+.|.+. +++++.+++|++++.++ +. +.+.+. + ++++.+|.|+
T Consensus 213 ----~---------d~----~~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~---~~-v~v~~~~~~~g~~~~i~~D~vi 269 (466)
T PRK06115 213 ----T---------DT----ETAKTLQKALTKQ--GMKFKLGSKVTGATAGA---DG-VSLTLEPAAGGAAETLQADYVL 269 (466)
T ss_pred ----C---------CH----HHHHHHHHHHHhc--CCEEEECcEEEEEEEcC---Ce-EEEEEEEcCCCceeEEEeCEEE
Confidence 0 00 0122344445443 89999999999997653 22 333321 2 3479999999
Q ss_pred ecCCCchhh
Q 044609 160 GCDGVHSMV 168 (232)
Q Consensus 160 ~A~G~~S~~ 168 (232)
.|.|..+..
T Consensus 270 ~a~G~~pn~ 278 (466)
T PRK06115 270 VAIGRRPYT 278 (466)
T ss_pred EccCCcccc
Confidence 999988654
No 280
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.47 E-value=2e-07 Score=77.64 Aligned_cols=46 Identities=9% Similarity=0.011 Sum_probs=36.7
Q ss_pred CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhh
Q 044609 120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVA 169 (232)
Q Consensus 120 ~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r 169 (232)
+++++.++++.+++..+ .. ..+.+.+|+++.+|.|+.|.|..++..
T Consensus 236 GV~i~~~~~v~~v~~~~---~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 236 GTLFLEGVVPINIEKMD---DK-IKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred CCEEEcCCeEEEEEEcC---Ce-EEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 78999999998887653 22 556777888899999999999987643
No 281
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.45 E-value=2.9e-06 Score=74.69 Aligned_cols=101 Identities=19% Similarity=0.320 Sum_probs=73.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
..++|||||+.|+-+|..|++.|.+|+|+|+.+.+-.. .+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~---------------~l------------------------- 185 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE---------------QL------------------------- 185 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh---------------hc-------------------------
Confidence 47999999999999999999999999999986532000 00
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
.. -....+.+.|.+. +++++.++.++++..+.+ +.. ..+.+.+|+++.+|+||.|.|..
T Consensus 186 -------------d~----~~~~~l~~~L~~~--GV~v~~~~~v~~I~~~~~-~~~-~~v~~~dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 186 -------------DQ----MGGEQLRRKIESM--GVRVHTSKNTLEIVQEGV-EAR-KTMRFADGSELEVDFIVFSTGIR 244 (847)
T ss_pred -------------CH----HHHHHHHHHHHHC--CCEEEcCCeEEEEEecCC-Cce-EEEEECCCCEEEcCEEEECCCcc
Confidence 00 0122344444433 899999999999976431 223 66788899999999999999987
Q ss_pred hh
Q 044609 166 SM 167 (232)
Q Consensus 166 S~ 167 (232)
.+
T Consensus 245 Pn 246 (847)
T PRK14989 245 PQ 246 (847)
T ss_pred cC
Confidence 54
No 282
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.45 E-value=3.9e-06 Score=69.06 Aligned_cols=98 Identities=15% Similarity=0.238 Sum_probs=71.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|+.|+-+|..|++.|.+|+++|+.+.....
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR------------------------------------------ 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC------------------------------------------
Confidence 58999999999999999999999999999986532100
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
. .. --...+.+.|.+. +++++++++|+++..++ .. +.+.+.++ ++.+|.|+.|.|..
T Consensus 197 ---~---------~~----~~~~~l~~~l~~~--gV~v~~~~~v~~i~~~~---~~-v~v~~~~g-~i~~D~vl~a~G~~ 253 (441)
T PRK08010 197 ---E---------DR----DIADNIATILRDQ--GVDIILNAHVERISHHE---NQ-VQVHSEHA-QLAVDALLIASGRQ 253 (441)
T ss_pred ---c---------CH----HHHHHHHHHHHhC--CCEEEeCCEEEEEEEcC---CE-EEEEEcCC-eEEeCEEEEeecCC
Confidence 0 00 0012334444433 89999999999998653 33 55666555 48999999999998
Q ss_pred hhh
Q 044609 166 SMV 168 (232)
Q Consensus 166 S~~ 168 (232)
++.
T Consensus 254 pn~ 256 (441)
T PRK08010 254 PAT 256 (441)
T ss_pred cCC
Confidence 754
No 283
>PRK12831 putative oxidoreductase; Provisional
Probab=98.45 E-value=2.9e-07 Score=75.97 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=33.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.+||+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 479999999999999999999999999999987755
No 284
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.44 E-value=2.9e-07 Score=74.55 Aligned_cols=35 Identities=34% Similarity=0.618 Sum_probs=32.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
|++||+|||+|++|+++|+.|+++|.+|++||+..
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 35899999999999999999999999999999874
No 285
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.44 E-value=3e-07 Score=73.54 Aligned_cols=37 Identities=32% Similarity=0.695 Sum_probs=34.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
..+++|||||++|+++|+.|++.|++|.++||.+..+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 4689999999999999999999999999999998764
No 286
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.44 E-value=3e-06 Score=74.40 Aligned_cols=99 Identities=23% Similarity=0.397 Sum_probs=72.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-.. .+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~---------------~l------------------------- 180 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK---------------QL------------------------- 180 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh---------------hc-------------------------
Confidence 57999999999999999999999999999976532000 00
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
.. .....+.+.|.+. +++++.++.++++..+ +.. ..|.+.+|+++.+|.||.|.|..
T Consensus 181 -------------d~----~~~~~l~~~l~~~--GV~v~~~~~v~~i~~~---~~~-~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 181 -------------DQ----TAGRLLQRELEQK--GLTFLLEKDTVEIVGA---TKA-DRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred -------------CH----HHHHHHHHHHHHc--CCEEEeCCceEEEEcC---Cce-EEEEECCCCEEEcCEEEECCCCC
Confidence 00 0122334444433 8999999999998754 343 66788899999999999999987
Q ss_pred hh
Q 044609 166 SM 167 (232)
Q Consensus 166 S~ 167 (232)
.+
T Consensus 238 Pn 239 (785)
T TIGR02374 238 PN 239 (785)
T ss_pred cC
Confidence 53
No 287
>PTZ00058 glutathione reductase; Provisional
Probab=98.41 E-value=5.3e-06 Score=69.89 Aligned_cols=101 Identities=16% Similarity=0.245 Sum_probs=71.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (232)
..+|+|||+|..|+-+|..|++.|.+|+++|+.+.+... +
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~------------------~---------------------- 276 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK------------------F---------------------- 276 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc------------------C----------------------
Confidence 358999999999999999999999999999986532100 0
Q ss_pred ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC-cEEEccEEEecCC
Q 044609 85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS-TIIKAKVLIGCDG 163 (232)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g-~~~~a~~vV~A~G 163 (232)
.. -....+.+.|.+. +++++.++.|.++..++ +.. +.+...++ +++.+|.|+.|.|
T Consensus 277 --------------d~----~i~~~l~~~L~~~--GV~i~~~~~V~~I~~~~--~~~-v~v~~~~~~~~i~aD~VlvA~G 333 (561)
T PTZ00058 277 --------------DE----TIINELENDMKKN--NINIITHANVEEIEKVK--EKN-LTIYLSDGRKYEHFDYVIYCVG 333 (561)
T ss_pred --------------CH----HHHHHHHHHHHHC--CCEEEeCCEEEEEEecC--CCc-EEEEECCCCEEEECCEEEECcC
Confidence 00 0122344455443 89999999999998653 222 44444444 5799999999999
Q ss_pred Cchhh
Q 044609 164 VHSMV 168 (232)
Q Consensus 164 ~~S~~ 168 (232)
.....
T Consensus 334 r~Pn~ 338 (561)
T PTZ00058 334 RSPNT 338 (561)
T ss_pred CCCCc
Confidence 87653
No 288
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.41 E-value=3.4e-06 Score=69.30 Aligned_cols=94 Identities=18% Similarity=0.371 Sum_probs=68.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||||+.|+-+|..|++.|.+|+++++.+..... +
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~----------------~------------------------- 187 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL----------------M------------------------- 187 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh----------------c-------------------------
Confidence 57999999999999999999999999999986533100 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
... ....+.+.|.+. +++++++++|++++. . .+.+.+|+++.+|.|+.|.|..
T Consensus 188 -------------d~~----~~~~l~~~l~~~--gI~i~~~~~v~~i~~-----~---~v~~~~g~~~~~D~vl~a~G~~ 240 (438)
T PRK13512 188 -------------DAD----MNQPILDELDKR--EIPYRLNEEIDAING-----N---EVTFKSGKVEHYDMIIEGVGTH 240 (438)
T ss_pred -------------CHH----HHHHHHHHHHhc--CCEEEECCeEEEEeC-----C---EEEECCCCEEEeCEEEECcCCC
Confidence 000 012334444443 899999999999852 1 2445678889999999999987
Q ss_pred hh
Q 044609 166 SM 167 (232)
Q Consensus 166 S~ 167 (232)
.+
T Consensus 241 pn 242 (438)
T PRK13512 241 PN 242 (438)
T ss_pred cC
Confidence 54
No 289
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.41 E-value=4.5e-07 Score=68.96 Aligned_cols=36 Identities=33% Similarity=0.581 Sum_probs=33.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
+|++|||||.+|+.+|..|++.|.+|+|+||++..+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 699999999999999999999999999999998653
No 290
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.41 E-value=4.8e-07 Score=74.46 Aligned_cols=37 Identities=38% Similarity=0.485 Sum_probs=34.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
..++|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3479999999999999999999999999999998755
No 291
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.40 E-value=4.9e-07 Score=74.49 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=33.7
Q ss_pred cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCc
Q 044609 5 EEDVVIIGAGIAGLATAVALRR--LGIKALVLEKSDGLR 41 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~--~g~~v~viE~~~~~~ 41 (232)
..+|+||||||||+++|..|++ .|++|+|+|+.+.+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 4689999999999999999997 799999999998764
No 292
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.38 E-value=6.7e-06 Score=68.63 Aligned_cols=32 Identities=38% Similarity=0.493 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
.+|+|||+|+.|+-+|..|++.|.+|+++++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 48999999999999999999999999999874
No 293
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.37 E-value=5e-07 Score=75.23 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=34.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
|||+|||+||+|+++|..|+++|++|++||++...+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 699999999999999999999999999999998764
No 294
>PRK14694 putative mercuric reductase; Provisional
Probab=98.37 E-value=6.4e-06 Score=68.32 Aligned_cols=97 Identities=22% Similarity=0.312 Sum_probs=69.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|+.|+-+|..|++.|.+|+++++...... .
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~---------------------------------------~--- 216 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ---------------------------------------E--- 216 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC---------------------------------------C---
Confidence 5899999999999999999999999999986321100 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
.+. ....+.+.|.+. +++++.+++|.+++.++ .. +.+.+.++ ++.+|.||.|.|..
T Consensus 217 -------------~~~----~~~~l~~~l~~~--GI~v~~~~~v~~i~~~~---~~-~~v~~~~~-~i~~D~vi~a~G~~ 272 (468)
T PRK14694 217 -------------DPA----VGEAIEAAFRRE--GIEVLKQTQASEVDYNG---RE-FILETNAG-TLRAEQLLVATGRT 272 (468)
T ss_pred -------------CHH----HHHHHHHHHHhC--CCEEEeCCEEEEEEEcC---CE-EEEEECCC-EEEeCEEEEccCCC
Confidence 000 022334444432 89999999999997653 33 55655544 69999999999998
Q ss_pred hhh
Q 044609 166 SMV 168 (232)
Q Consensus 166 S~~ 168 (232)
++.
T Consensus 273 pn~ 275 (468)
T PRK14694 273 PNT 275 (468)
T ss_pred CCc
Confidence 754
No 295
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.36 E-value=5.8e-07 Score=77.36 Aligned_cols=36 Identities=42% Similarity=0.609 Sum_probs=33.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
..+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 479999999999999999999999999999998765
No 296
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.36 E-value=6.5e-06 Score=67.84 Aligned_cols=98 Identities=19% Similarity=0.314 Sum_probs=67.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||||++|+-+|..|.+.|.+|+++++.+..-..
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 187 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD------------------------------------------ 187 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch------------------------------------------
Confidence 58999999999999999999999999999875432000
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
. + .. --...+.+.|.+. +++++++++|+++..+ +.. ..+.+. +.++.||.||.|+|..
T Consensus 188 --~--~-------~~----~~~~~l~~~l~~~--gI~v~~~~~v~~i~~~---~~~-~~v~~~-~~~i~~d~vi~a~G~~ 245 (444)
T PRK09564 188 --S--F-------DK----EITDVMEEELREN--GVELHLNEFVKSLIGE---DKV-EGVVTD-KGEYEADVVIVATGVK 245 (444)
T ss_pred --h--c-------CH----HHHHHHHHHHHHC--CCEEEcCCEEEEEecC---CcE-EEEEeC-CCEEEcCEEEECcCCC
Confidence 0 0 00 0012233344332 7899999999999643 332 444444 4469999999999987
Q ss_pred hh
Q 044609 166 SM 167 (232)
Q Consensus 166 S~ 167 (232)
..
T Consensus 246 p~ 247 (444)
T PRK09564 246 PN 247 (444)
T ss_pred cC
Confidence 53
No 297
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.35 E-value=5.9e-07 Score=80.38 Aligned_cols=37 Identities=35% Similarity=0.445 Sum_probs=34.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
.++|+||||||||+++|..|+++|++|+|+|+.+.++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG 466 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 4699999999999999999999999999999987653
No 298
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.34 E-value=3.9e-06 Score=70.44 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=54.6
Q ss_pred eeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC---CC--cEEEccEEEecCCCchh-hhhhhcC
Q 044609 103 RSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG---DS--TIIKAKVLIGCDGVHSM-VAQWLGL 174 (232)
Q Consensus 103 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g--~~~~a~~vV~A~G~~S~-~r~~~~~ 174 (232)
..++...+...+.+.+. |++++.+++|+++..++ +.. +.|.+. +| .++.|+.||+|+|.|+. +.+.++.
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v-~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~ 199 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREG--GRV-TGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL 199 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC--CEE-EEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC
Confidence 47888999988877764 88999999999998764 333 444432 34 37999999999999984 6666676
Q ss_pred CCCcc
Q 044609 175 SESIN 179 (232)
Q Consensus 175 ~~~~~ 179 (232)
+.+..
T Consensus 200 ~~~i~ 204 (516)
T TIGR03377 200 DIRMF 204 (516)
T ss_pred CCcee
Confidence 54433
No 299
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.34 E-value=7.4e-06 Score=67.95 Aligned_cols=98 Identities=15% Similarity=0.255 Sum_probs=68.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||||+.|+-+|..|++.|.+|+++|+.+.+-..
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~------------------------------------------ 212 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA------------------------------------------ 212 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc------------------------------------------
Confidence 58999999999999999999999999999987643100
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC--C--cEEEccEEEec
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD--S--TIIKAKVLIGC 161 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~--g--~~~~a~~vV~A 161 (232)
+ .. -.+..+.+.|.+ .++++.+++|++++..+ +. +.+.+.+ + .++.+|.||.|
T Consensus 213 ---~---------d~----~~~~~~~~~l~~---~v~i~~~~~v~~i~~~~---~~-~~v~~~~~~~~~~~i~~D~vi~a 269 (471)
T PRK06467 213 ---A---------DK----DIVKVFTKRIKK---QFNIMLETKVTAVEAKE---DG-IYVTMEGKKAPAEPQRYDAVLVA 269 (471)
T ss_pred ---C---------CH----HHHHHHHHHHhh---ceEEEcCCEEEEEEEcC---CE-EEEEEEeCCCcceEEEeCEEEEe
Confidence 0 00 001223334433 27788899999997653 33 4455433 2 36999999999
Q ss_pred CCCchhh
Q 044609 162 DGVHSMV 168 (232)
Q Consensus 162 ~G~~S~~ 168 (232)
.|..++.
T Consensus 270 ~G~~pn~ 276 (471)
T PRK06467 270 VGRVPNG 276 (471)
T ss_pred ecccccC
Confidence 9998765
No 300
>PRK14727 putative mercuric reductase; Provisional
Probab=98.34 E-value=8.7e-06 Score=67.71 Aligned_cols=97 Identities=18% Similarity=0.301 Sum_probs=69.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|+.|+-+|..|++.|.+|+++++...... .
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~-------------------~----------------------- 226 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR-------------------E----------------------- 226 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc-------------------c-----------------------
Confidence 5799999999999999999999999999986421100 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
.+ .....+.+.|.+. +++++.+++|+++..++ .. +.+.+.++ ++.+|.||.|.|..
T Consensus 227 -------------d~----~~~~~l~~~L~~~--GV~i~~~~~V~~i~~~~---~~-~~v~~~~g-~i~aD~VlvA~G~~ 282 (479)
T PRK14727 227 -------------DP----LLGETLTACFEKE--GIEVLNNTQASLVEHDD---NG-FVLTTGHG-ELRAEKLLISTGRH 282 (479)
T ss_pred -------------hH----HHHHHHHHHHHhC--CCEEEcCcEEEEEEEeC---CE-EEEEEcCC-eEEeCEEEEccCCC
Confidence 00 0012334444432 89999999999997653 33 55666655 58999999999998
Q ss_pred hhh
Q 044609 166 SMV 168 (232)
Q Consensus 166 S~~ 168 (232)
++.
T Consensus 283 pn~ 285 (479)
T PRK14727 283 ANT 285 (479)
T ss_pred CCc
Confidence 754
No 301
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.33 E-value=9.6e-07 Score=73.16 Aligned_cols=37 Identities=41% Similarity=0.624 Sum_probs=34.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
.++|+|||||++|+++|..|++.|++|+|+|+.+.++
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G 179 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG 179 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 3799999999999999999999999999999987653
No 302
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.32 E-value=8.1e-06 Score=66.42 Aligned_cols=99 Identities=25% Similarity=0.321 Sum_probs=73.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|+.|+.+|..|+++|++|+++|+.+.+.....
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~---------------------------------------- 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL---------------------------------------- 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh----------------------------------------
Confidence 5899999999999999999999999999999876532200
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEE--EEeCCCcEEEccEEEecCC
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAI--INLGDSTIIKAKVLIGCDG 163 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~--v~~~~g~~~~a~~vV~A~G 163 (232)
. ..-...+.+.|.+. +++++++.++.+++... +.. .. +...++..+.+|.++.+.|
T Consensus 177 -------------~----~~~~~~~~~~l~~~--gi~~~~~~~~~~i~~~~--~~~-~~~~~~~~~~~~~~~d~~~~~~g 234 (415)
T COG0446 177 -------------D----PEVAEELAELLEKY--GVELLLGTKVVGVEGKG--NTL-VVERVVGIDGEEIKADLVIIGPG 234 (415)
T ss_pred -------------h----HHHHHHHHHHHHHC--CcEEEeCCceEEEEccc--Ccc-eeeEEEEeCCcEEEeeEEEEeec
Confidence 0 00122334444443 68999999999998764 221 22 5777888899999999999
Q ss_pred Cch
Q 044609 164 VHS 166 (232)
Q Consensus 164 ~~S 166 (232)
...
T Consensus 235 ~~p 237 (415)
T COG0446 235 ERP 237 (415)
T ss_pred ccc
Confidence 876
No 303
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.30 E-value=9.7e-07 Score=77.22 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=33.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.++|+||||||||+++|..|+++|++|+|+|+.+.+
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~ 466 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI 466 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 479999999999999999999999999999997654
No 304
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.29 E-value=7.8e-07 Score=77.82 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
..+|+||||||||+++|+.|++.|++|+++|+.
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 369999999999999999999999999999985
No 305
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.29 E-value=1.7e-05 Score=65.76 Aligned_cols=100 Identities=20% Similarity=0.310 Sum_probs=69.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+...
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 207 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL------------------------------------------ 207 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------------------------------
Confidence 58999999999999999999999999999987543100
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC--cEEEccEEEecCC
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS--TIIKAKVLIGCDG 163 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g--~~~~a~~vV~A~G 163 (232)
+ .. --...+.+.|.+ . +++++++++.+++.++ +.. +.+...++ .++.+|.||.|.|
T Consensus 208 ---~---------d~----~~~~~~~~~l~~--~-I~i~~~~~v~~i~~~~--~~~-v~~~~~~~~~~~i~~D~vi~a~G 265 (460)
T PRK06292 208 ---E---------DP----EVSKQAQKILSK--E-FKIKLGAKVTSVEKSG--DEK-VEELEKGGKTETIEADYVLVATG 265 (460)
T ss_pred ---h---------hH----HHHHHHHHHHhh--c-cEEEcCCEEEEEEEcC--Cce-EEEEEcCCceEEEEeCEEEEccC
Confidence 0 00 001223333433 2 7899999999997653 223 44444344 4799999999999
Q ss_pred Cchhhh
Q 044609 164 VHSMVA 169 (232)
Q Consensus 164 ~~S~~r 169 (232)
......
T Consensus 266 ~~p~~~ 271 (460)
T PRK06292 266 RRPNTD 271 (460)
T ss_pred CccCCC
Confidence 876543
No 306
>PLN02529 lysine-specific histone demethylase 1
Probab=98.28 E-value=1.3e-06 Score=75.21 Aligned_cols=37 Identities=46% Similarity=0.688 Sum_probs=34.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
..++|+|||||++|+++|..|++.|++|+|+|+....
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 195 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRP 195 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccC
Confidence 3479999999999999999999999999999998754
No 307
>PLN02546 glutathione reductase
Probab=98.27 E-value=1.6e-05 Score=67.06 Aligned_cols=100 Identities=15% Similarity=0.129 Sum_probs=70.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||||..|+-+|..|++.|.+|+++++.+.....
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~------------------------------------------ 290 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG------------------------------------------ 290 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc------------------------------------------
Confidence 58999999999999999999999999999986532100
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
+ . .-.+..+.+.|.+. +++++.++++.++...+ +.. +.+.+.+++...+|.||.|.|..
T Consensus 291 ---~---------d----~~~~~~l~~~L~~~--GV~i~~~~~v~~i~~~~--~g~-v~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 291 ---F---------D----EEVRDFVAEQMSLR--GIEFHTEESPQAIIKSA--DGS-LSLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred ---c---------C----HHHHHHHHHHHHHC--CcEEEeCCEEEEEEEcC--CCE-EEEEECCeEEEecCEEEEeeccc
Confidence 0 0 00122334444432 89999999999997643 233 55666655545589999999998
Q ss_pred hhh
Q 044609 166 SMV 168 (232)
Q Consensus 166 S~~ 168 (232)
.+.
T Consensus 350 Pnt 352 (558)
T PLN02546 350 PNT 352 (558)
T ss_pred cCC
Confidence 764
No 308
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.27 E-value=1.2e-05 Score=65.74 Aligned_cols=92 Identities=20% Similarity=0.282 Sum_probs=65.3
Q ss_pred cEEEECCCHHHHHHHHHHHh--------------CCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccC
Q 044609 7 DVVIIGAGIAGLATAVALRR--------------LGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAP 72 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~--------------~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 72 (232)
.|+|||||++|+-+|..|+. .+.+|+++|+.+.+-..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~----------------------------- 225 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS----------------------------- 225 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-----------------------------
Confidence 79999999999999999875 36778888875432000
Q ss_pred ceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcE
Q 044609 73 AKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTI 152 (232)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~ 152 (232)
+ + .-.+..+.+.|.+. +++++.+++|.++..+ . |.+.+|++
T Consensus 226 ------------------~-------~----~~~~~~~~~~L~~~--gV~v~~~~~v~~v~~~----~----v~~~~g~~ 266 (424)
T PTZ00318 226 ------------------F-------D----QALRKYGQRRLRRL--GVDIRTKTAVKEVLDK----E----VVLKDGEV 266 (424)
T ss_pred ------------------C-------C----HHHHHHHHHHHHHC--CCEEEeCCeEEEEeCC----E----EEECCCCE
Confidence 0 0 00133445555543 8999999999988532 1 44678889
Q ss_pred EEccEEEecCCCch
Q 044609 153 IKAKVLIGCDGVHS 166 (232)
Q Consensus 153 ~~a~~vV~A~G~~S 166 (232)
+.+|.+|.|.|...
T Consensus 267 i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 267 IPTGLVVWSTGVGP 280 (424)
T ss_pred EEccEEEEccCCCC
Confidence 99999999999654
No 309
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.26 E-value=3e-06 Score=60.89 Aligned_cols=37 Identities=38% Similarity=0.561 Sum_probs=32.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcC
Q 044609 6 EDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRA 42 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~ 42 (232)
.||+|||+|-+||++|+..+++ .++|.|||..-.|+.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG 115 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG 115 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC
Confidence 6999999999999999999965 689999999877743
No 310
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.26 E-value=1.4e-06 Score=71.94 Aligned_cols=36 Identities=39% Similarity=0.558 Sum_probs=33.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.++|+|||||++|+++|..|+++|++|+|+|+.+.+
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 479999999999999999999999999999998765
No 311
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.26 E-value=1.5e-06 Score=75.33 Aligned_cols=37 Identities=41% Similarity=0.624 Sum_probs=34.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
..+|+|||||++|+++|+.|++.|++|+|+|+...++
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G 274 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG 274 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence 4799999999999999999999999999999987663
No 312
>PRK13748 putative mercuric reductase; Provisional
Probab=98.26 E-value=1.7e-05 Score=67.43 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=69.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|+.|+-+|..|++.|.+|+++++...... .
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-------------------~----------------------- 308 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFR-------------------E----------------------- 308 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccc-------------------c-----------------------
Confidence 5899999999999999999999999999997421100 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
.+ -....+.+.|.+. +++++.+++|++++.++ .. +.+.+.++ ++.+|.||.|.|..
T Consensus 309 -------------d~----~~~~~l~~~l~~~--gI~i~~~~~v~~i~~~~---~~-~~v~~~~~-~i~~D~vi~a~G~~ 364 (561)
T PRK13748 309 -------------DP----AIGEAVTAAFRAE--GIEVLEHTQASQVAHVD---GE-FVLTTGHG-ELRADKLLVATGRA 364 (561)
T ss_pred -------------CH----HHHHHHHHHHHHC--CCEEEcCCEEEEEEecC---CE-EEEEecCC-eEEeCEEEEccCCC
Confidence 00 0012334444433 89999999999997653 33 55666555 59999999999987
Q ss_pred hhh
Q 044609 166 SMV 168 (232)
Q Consensus 166 S~~ 168 (232)
.+.
T Consensus 365 pn~ 367 (561)
T PRK13748 365 PNT 367 (561)
T ss_pred cCC
Confidence 654
No 313
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.25 E-value=1.8e-06 Score=70.51 Aligned_cols=37 Identities=30% Similarity=0.223 Sum_probs=32.6
Q ss_pred cccEEEECCCHHHHHHHHHHH-hCCCcEEEEecCCCCc
Q 044609 5 EEDVVIIGAGIAGLATAVALR-RLGIKALVLEKSDGLR 41 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~-~~g~~v~viE~~~~~~ 41 (232)
...|+||||||||+.+|..|. +.|++|+|+||.+.+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 358999999999999999764 6799999999998874
No 314
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.24 E-value=1.1e-05 Score=60.83 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC-------CcEEEEecCCCCcC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLG-------IKALVLEKSDGLRA 42 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g-------~~v~viE~~~~~~~ 42 (232)
..+|+|||+|..||++|+.+.+.. .+|++++-+..+..
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T 47 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDT 47 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcccc
Confidence 458999999999999998887732 68999987766543
No 315
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.23 E-value=1.9e-05 Score=65.75 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=69.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+++|||||+.|+-+|..|++.|.+|+++++..... . +
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~-~------------------~----------------------- 218 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR-G------------------F----------------------- 218 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc-c------------------c-----------------------
Confidence 479999999999999999999999999998631110 0 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC---cEEEccEEEecC
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS---TIIKAKVLIGCD 162 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g---~~~~a~~vV~A~ 162 (232)
.. -....+.+.|.+. +++++.++.+.++...+ + . +.+.+.++ +++.+|.|+.|.
T Consensus 219 -------------d~----~~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~--~-~-~~v~~~~~~~~~~i~~D~vl~a~ 275 (484)
T TIGR01438 219 -------------DQ----DCANKVGEHMEEH--GVKFKRQFVPIKVEQIE--A-K-VKVTFTDSTNGIEEEYDTVLLAI 275 (484)
T ss_pred -------------CH----HHHHHHHHHHHHc--CCEEEeCceEEEEEEcC--C-e-EEEEEecCCcceEEEeCEEEEEe
Confidence 00 0122344455443 89999999999987653 2 2 45555554 379999999999
Q ss_pred CCchhh
Q 044609 163 GVHSMV 168 (232)
Q Consensus 163 G~~S~~ 168 (232)
|...+.
T Consensus 276 G~~pn~ 281 (484)
T TIGR01438 276 GRDACT 281 (484)
T ss_pred cCCcCC
Confidence 987654
No 316
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.22 E-value=2e-06 Score=73.92 Aligned_cols=36 Identities=36% Similarity=0.516 Sum_probs=33.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.++|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 369999999999999999999999999999998765
No 317
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.21 E-value=2.5e-06 Score=70.60 Aligned_cols=36 Identities=39% Similarity=0.641 Sum_probs=33.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
..+|+|||+||+|+++|..|+++|++|+++|+.+.+
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 479999999999999999999999999999998765
No 318
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.20 E-value=2.3e-05 Score=67.20 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=68.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||||..|+-+|..|++.|.+|+++|+.+.+... +
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~------------------~----------------------- 351 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL------------------L----------------------- 351 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc------------------C-----------------------
Confidence 47999999999999999999999999999987643100 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC-------C--------
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD-------S-------- 150 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-------g-------- 150 (232)
.. -....+.+.+.+. .+++++.++.|.++...++ +.. +.+.+.+ +
T Consensus 352 -------------d~----eis~~l~~~ll~~-~GV~I~~~~~V~~I~~~~~-~~~-v~v~~~~~~~~~~~~~~~~~~~~ 411 (659)
T PTZ00153 352 -------------DA----DVAKYFERVFLKS-KPVRVHLNTLIEYVRAGKG-NQP-VIIGHSERQTGESDGPKKNMNDI 411 (659)
T ss_pred -------------CH----HHHHHHHHHHhhc-CCcEEEcCCEEEEEEecCC-ceE-EEEEEeccccccccccccccccc
Confidence 00 0012223333221 3799999999999976532 222 4444321 1
Q ss_pred cEEEccEEEecCCCchhh
Q 044609 151 TIIKAKVLIGCDGVHSMV 168 (232)
Q Consensus 151 ~~~~a~~vV~A~G~~S~~ 168 (232)
+++.+|.|+.|+|...+.
T Consensus 412 ~~i~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 412 KETYVDSCLVATGRKPNT 429 (659)
T ss_pred eEEEcCEEEEEECcccCC
Confidence 269999999999988654
No 319
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.19 E-value=1.8e-06 Score=72.55 Aligned_cols=35 Identities=43% Similarity=0.607 Sum_probs=33.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
+++|+||||+|.+|+++|..|++.|.+|+|+|++.
T Consensus 6 ~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 6 MEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 56999999999999999999999999999999985
No 320
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.18 E-value=2e-05 Score=63.30 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=78.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
-.|+++|+|..|+-+|..|...+++|+++++.+.+-.. +
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~----------------l------------------------- 252 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPR----------------L------------------------- 252 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhh----------------h-------------------------
Confidence 46999999999999999999999999999987643110 0
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
. . .--+..+...|.+. +++++.++.+.+++.+++ |+. ..|.+.+|+++.||+||.+.|+.
T Consensus 253 ---------f---~----~~i~~~~~~y~e~k--gVk~~~~t~~s~l~~~~~-Gev-~~V~l~dg~~l~adlvv~GiG~~ 312 (478)
T KOG1336|consen 253 ---------F---G----PSIGQFYEDYYENK--GVKFYLGTVVSSLEGNSD-GEV-SEVKLKDGKTLEADLVVVGIGIK 312 (478)
T ss_pred ---------h---h----HHHHHHHHHHHHhc--CeEEEEecceeecccCCC-CcE-EEEEeccCCEeccCeEEEeeccc
Confidence 0 0 00133344455543 899999999999988765 666 88999999999999999999987
Q ss_pred hh
Q 044609 166 SM 167 (232)
Q Consensus 166 S~ 167 (232)
+.
T Consensus 313 p~ 314 (478)
T KOG1336|consen 313 PN 314 (478)
T ss_pred cc
Confidence 64
No 321
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.17 E-value=3.1e-06 Score=72.70 Aligned_cols=36 Identities=39% Similarity=0.609 Sum_probs=33.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
..+|+|||+||+|+++|..|++.|++|+|+|+.+.+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 478999999999999999999999999999998865
No 322
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.16 E-value=8e-05 Score=58.97 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=52.1
Q ss_pred CceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609 100 SGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM 167 (232)
Q Consensus 100 ~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~ 167 (232)
+....++...+...|.+.+. |++++.+++|+++..++ +.. ..|.+.+| ++.||.||+|+|.++.
T Consensus 129 ~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~-~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 129 PDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRG--EKV-TAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred CCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC--CEE-EEEEcCCC-EEECCEEEEcCChhhh
Confidence 34568889999999988765 78999999999998764 333 55777677 6999999999999985
No 323
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.15 E-value=5.8e-06 Score=65.84 Aligned_cols=62 Identities=16% Similarity=0.227 Sum_probs=50.2
Q ss_pred HHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhhhhh
Q 044609 108 QSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWL 172 (232)
Q Consensus 108 ~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r~~~ 172 (232)
..+..++++.++ |.+|++...|.+|..+. |.. +.|.++||+++.++.||--++.|-..-+++
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~--gka-~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDS--GKA-VGVRLADGTEVRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccC--CeE-EEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence 345555555554 78999999999999876 565 899999999999999999998888776666
No 324
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.13 E-value=4.9e-06 Score=66.43 Aligned_cols=36 Identities=44% Similarity=0.482 Sum_probs=33.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
.+|+|||+|++|+.+|..|++.|++|+++|+.+.+.
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g 54 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG 54 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 699999999999999999999999999999987663
No 325
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.11 E-value=4.2e-05 Score=64.24 Aligned_cols=94 Identities=26% Similarity=0.320 Sum_probs=66.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||||+.|+-+|..|++.+.+|+++|+.+.+..
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------------------------------------------- 389 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------------------------------------------- 389 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------------------------------------------
Confidence 5899999999999999999999999999986542200
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC---C--cEEEccEEEe
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD---S--TIIKAKVLIG 160 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~---g--~~~~a~~vV~ 160 (232)
...+.+.|.+ ..++++++++.++++..++ +.. ..|.+.+ + +++.||.|+.
T Consensus 390 ---------------------~~~l~~~l~~-~~gV~i~~~~~v~~i~~~~--~~v-~~v~~~~~~~~~~~~i~~D~vi~ 444 (515)
T TIGR03140 390 ---------------------DKVLQDKLKS-LPNVDILTSAQTTEIVGDG--DKV-TGIRYQDRNSGEEKQLDLDGVFV 444 (515)
T ss_pred ---------------------hHHHHHHHhc-CCCCEEEECCeeEEEEcCC--CEE-EEEEEEECCCCcEEEEEcCEEEE
Confidence 0012233332 2489999999999997653 232 3354432 2 3789999999
Q ss_pred cCCCchh
Q 044609 161 CDGVHSM 167 (232)
Q Consensus 161 A~G~~S~ 167 (232)
|.|....
T Consensus 445 a~G~~Pn 451 (515)
T TIGR03140 445 QIGLVPN 451 (515)
T ss_pred EeCCcCC
Confidence 9998753
No 326
>PRK10262 thioredoxin reductase; Provisional
Probab=98.10 E-value=3.8e-05 Score=60.57 Aligned_cols=98 Identities=15% Similarity=0.276 Sum_probs=66.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|..|+-+|..|++.+.+|+++++.+....
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~------------------------------------------- 183 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA------------------------------------------- 183 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC-------------------------------------------
Confidence 5899999999999999999999999999998642200
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC------CcEEEccEEE
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD------STIIKAKVLI 159 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~------g~~~~a~~vV 159 (232)
. ...+..+.+.|.+. +++++.++.++++..++ +.. ..|.+.+ .+++.+|.||
T Consensus 184 -------------~----~~~~~~~~~~l~~~--gV~i~~~~~v~~v~~~~--~~~-~~v~~~~~~~~~~~~~i~~D~vv 241 (321)
T PRK10262 184 -------------E----KILIKRLMDKVENG--NIILHTNRTLEEVTGDQ--MGV-TGVRLRDTQNSDNIESLDVAGLF 241 (321)
T ss_pred -------------C----HHHHHHHHhhccCC--CeEEEeCCEEEEEEcCC--ccE-EEEEEEEcCCCCeEEEEECCEEE
Confidence 0 00012223333322 78999999999997643 222 2344332 1379999999
Q ss_pred ecCCCchhh
Q 044609 160 GCDGVHSMV 168 (232)
Q Consensus 160 ~A~G~~S~~ 168 (232)
.|.|.....
T Consensus 242 ~a~G~~p~~ 250 (321)
T PRK10262 242 VAIGHSPNT 250 (321)
T ss_pred EEeCCccCh
Confidence 999987643
No 327
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=98.09 E-value=3e-06 Score=64.54 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=29.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC-CC-cEEEEecCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRL-GI-KALVLEKSD 38 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~-g~-~v~viE~~~ 38 (232)
+++.|+|||||.+|+++|..+.++ +. +|.|+|..+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 568999999999999999999986 43 788888654
No 328
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.09 E-value=1.8e-05 Score=64.59 Aligned_cols=46 Identities=13% Similarity=0.256 Sum_probs=36.8
Q ss_pred CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhh
Q 044609 120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVA 169 (232)
Q Consensus 120 ~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r 169 (232)
+.+|+++++|++|+.++ .. +.|.+.+|+++.||.||.|.......+
T Consensus 223 g~~i~l~~~V~~I~~~~---~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 223 GGEIRLNTPVTRIERED---GG-VTVTTEDGETIEADAVISAVPPSVLKN 268 (450)
T ss_dssp GGGEESSEEEEEEEEES---SE-EEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred CceeecCCcceeccccc---cc-cccccccceEEecceeeecCchhhhhh
Confidence 45899999999999985 44 889999999999999999997765433
No 329
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.08 E-value=2.7e-05 Score=61.73 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=69.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCCCcCcc----eeeeecccHHHHHHHcCChHHHHhhccCceeeEE
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDGLRATG----AALTLSPNAWLALDALGVSHKLTSVYAPAKRVFV 78 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~~~~~~----~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 78 (232)
...|+|||||.++.-++..|.+++. +|.++=|+....... ....+.|...+.+..+....+ ....
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R--~~~l------- 260 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEER--RELL------- 260 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHH--HHHH-------
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHH--HHHH-------
Confidence 4689999999999999999998764 899999987653211 112334444444444322111 1000
Q ss_pred EEcCCCceeEEeccCCCCCCCCceeeeehHHH---HHHHhh-hC---CCCeEEeCceEEEEEecCCCCCccEEEEeCC--
Q 044609 79 TNLGTGATQELSYAGKSGRIGSGLRSVHRQSL---LEALAD-EL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGD-- 149 (232)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~l~~-~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-- 149 (232)
.... ......++...+ .+.+++ .+ ..+++..+++|++++..++ + . +.+.+.+
T Consensus 261 -----------~~~~-----~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~-~-~-~~l~~~~~~ 321 (341)
T PF13434_consen 261 -----------REQR-----HTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD-G-G-VRLTLRHRQ 321 (341)
T ss_dssp -----------HHTG-----GGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--S-S-EEEEEEETT
T ss_pred -----------HHhH-----hhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC-C-E-EEEEEEECC
Confidence 0000 000112333222 222222 11 1478999999999998752 2 3 6676654
Q ss_pred -C--cEEEccEEEecCCC
Q 044609 150 -S--TIIKAKVLIGCDGV 164 (232)
Q Consensus 150 -g--~~~~a~~vV~A~G~ 164 (232)
+ .++.+|.||.|||-
T Consensus 322 ~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 322 TGEEETLEVDAVILATGY 339 (341)
T ss_dssp T--EEEEEESEEEE---E
T ss_pred CCCeEEEecCEEEEcCCc
Confidence 2 37899999999995
No 330
>PLN02785 Protein HOTHEAD
Probab=98.07 E-value=5.2e-06 Score=70.35 Aligned_cols=35 Identities=29% Similarity=0.497 Sum_probs=32.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
.+||+||||+|.+|+.+|..|++ +.+|+|||++..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 35999999999999999999999 699999999974
No 331
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=98.07 E-value=4.3e-05 Score=57.79 Aligned_cols=74 Identities=16% Similarity=0.059 Sum_probs=58.5
Q ss_pred ccEEEecCCCchhhhhhhcCCCCcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEecCC
Q 044609 155 AKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSP 230 (232)
Q Consensus 155 a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 230 (232)
|+++|+|||.+|..|+.+... .......+.|....+...+....-..++++...+.+++++.+.++..+.+..+
T Consensus 2 A~LtivaDG~~S~fRk~l~~~--~~~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~ 75 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDN--KPQVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGP 75 (276)
T ss_pred CCEEEEecCCchHHHHhhcCC--CCceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCC
Confidence 789999999999999999733 33455667787777666666666677888877799999999999998877654
No 332
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.06 E-value=6.3e-06 Score=69.90 Aligned_cols=35 Identities=40% Similarity=0.645 Sum_probs=32.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.+|+|||+||+|+++|..|++.|++|+++|+.+.+
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 68999999999999999999999999999998765
No 333
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.05 E-value=6.6e-06 Score=68.41 Aligned_cols=35 Identities=40% Similarity=0.606 Sum_probs=33.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.+|+|||||++|+++|..|+++|++|+|+|+.+.+
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 69999999999999999999999999999998754
No 334
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.05 E-value=2.9e-05 Score=62.26 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=39.0
Q ss_pred HHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCc-EEEccEEEecCCCc-hhhhhh
Q 044609 109 SLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDST-IIKAKVLIGCDGVH-SMVAQW 171 (232)
Q Consensus 109 ~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~-~~~a~~vV~A~G~~-S~~r~~ 171 (232)
...+.|.+. |+++..++.|+++..+. |++.+|. ++.|+.+|=|+|.. |.+-+.
T Consensus 214 ~a~~~L~~~--GV~v~l~~~Vt~v~~~~--------v~~~~g~~~I~~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 214 YAERALEKL--GVEVLLGTPVTEVTPDG--------VTLKDGEEEIPADTVVWAAGVRASPLLKD 268 (405)
T ss_pred HHHHHHHHC--CCEEEcCCceEEECCCc--------EEEccCCeeEecCEEEEcCCCcCChhhhh
Confidence 344455543 89999999999997542 4566666 59999999999976 455444
No 335
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.04 E-value=4.7e-06 Score=70.22 Aligned_cols=33 Identities=39% Similarity=0.411 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLG-IKALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~ 39 (232)
|+||||+|.+|+.+|..|++.+ ++|+|||+++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 8999999999999999999988 79999999863
No 336
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.03 E-value=6e-06 Score=67.52 Aligned_cols=36 Identities=42% Similarity=0.487 Sum_probs=33.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
.+|+||||||+|+++|..|++.|++|+++|+.+.++
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G 159 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG 159 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc
Confidence 689999999999999999999999999999988763
No 337
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=98.00 E-value=8.8e-06 Score=64.40 Aligned_cols=37 Identities=35% Similarity=0.543 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcE--EEEecCCCCc
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKA--LVLEKSDGLR 41 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v--~viE~~~~~~ 41 (232)
..+|+|||||++||++|++|+|.+-++ +++|..+..+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG 49 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence 368999999999999999999997665 5699988763
No 338
>PLN03000 amine oxidase
Probab=97.99 E-value=1.1e-05 Score=70.30 Aligned_cols=37 Identities=46% Similarity=0.663 Sum_probs=34.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
..+|+|||||++|+++|..|++.|++|+|+|+...++
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG 220 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG 220 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence 4799999999999999999999999999999987653
No 339
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.95 E-value=0.00018 Score=59.38 Aligned_cols=33 Identities=30% Similarity=0.465 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
.+|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 589999999999999999999999999999864
No 340
>PRK13984 putative oxidoreductase; Provisional
Probab=97.94 E-value=1.5e-05 Score=68.23 Aligned_cols=36 Identities=33% Similarity=0.488 Sum_probs=33.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
..+|+|||+|++|+++|..|++.|++|+|+|+.+.+
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 468999999999999999999999999999998765
No 341
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.93 E-value=0.00012 Score=61.49 Aligned_cols=94 Identities=21% Similarity=0.277 Sum_probs=66.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||||.+|+-+|..|++.+.+|+++++.+.+...
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~------------------------------------------ 389 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKAD------------------------------------------ 389 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccccc------------------------------------------
Confidence 58999999999999999999999999999876532100
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC---CC--cEEEccEEEe
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG---DS--TIIKAKVLIG 160 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g--~~~~a~~vV~ 160 (232)
..+.+.+.+ ..++++++++.++++..++ +.. ..+.+. ++ +++.||.|+.
T Consensus 390 ----------------------~~l~~~l~~-~~gI~i~~~~~v~~i~~~~--g~v-~~v~~~~~~~g~~~~i~~D~v~~ 443 (517)
T PRK15317 390 ----------------------QVLQDKLRS-LPNVTIITNAQTTEVTGDG--DKV-TGLTYKDRTTGEEHHLELEGVFV 443 (517)
T ss_pred ----------------------HHHHHHHhc-CCCcEEEECcEEEEEEcCC--CcE-EEEEEEECCCCcEEEEEcCEEEE
Confidence 011222322 2489999999999998653 332 334443 33 3689999999
Q ss_pred cCCCchh
Q 044609 161 CDGVHSM 167 (232)
Q Consensus 161 A~G~~S~ 167 (232)
|.|....
T Consensus 444 ~~G~~p~ 450 (517)
T PRK15317 444 QIGLVPN 450 (517)
T ss_pred eECCccC
Confidence 9998753
No 342
>PLN02976 amine oxidase
Probab=97.91 E-value=1.7e-05 Score=72.06 Aligned_cols=36 Identities=36% Similarity=0.640 Sum_probs=33.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.++|+|||||++|+++|+.|++.|++|+|||+...+
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 379999999999999999999999999999998665
No 343
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.86 E-value=0.0004 Score=54.00 Aligned_cols=93 Identities=19% Similarity=0.312 Sum_probs=65.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (232)
.+|+|||+|++|+-+|..|++.+.+|+++++.+....
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~------------------------------------------- 178 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA------------------------------------------- 178 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc-------------------------------------------
Confidence 5899999999999999999999999999998532100
Q ss_pred eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEe---CCC--cEEEccEEEe
Q 044609 86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINL---GDS--TIIKAKVLIG 160 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~---~~g--~~~~a~~vV~ 160 (232)
...+.+.|.+ ..+++++++++++++..++ .. ..+.+ .++ .++.+|.||.
T Consensus 179 ---------------------~~~~~~~l~~-~~gv~~~~~~~v~~i~~~~---~~-~~v~~~~~~~g~~~~i~~D~vi~ 232 (300)
T TIGR01292 179 ---------------------EKILLDRLRK-NPNIEFLWNSTVKEIVGDN---KV-EGVKIKNTVTGEEEELKVDGVFI 232 (300)
T ss_pred ---------------------CHHHHHHHHh-CCCeEEEeccEEEEEEccC---cE-EEEEEEecCCCceEEEEccEEEE
Confidence 0112333332 2378899999999987542 22 23332 223 4799999999
Q ss_pred cCCCchh
Q 044609 161 CDGVHSM 167 (232)
Q Consensus 161 A~G~~S~ 167 (232)
|+|....
T Consensus 233 a~G~~~~ 239 (300)
T TIGR01292 233 AIGHEPN 239 (300)
T ss_pred eeCCCCC
Confidence 9997653
No 344
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.79 E-value=0.00038 Score=55.91 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=35.6
Q ss_pred HHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch
Q 044609 109 SLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS 166 (232)
Q Consensus 109 ~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S 166 (232)
.+.+.|.+. +++++.++++.++.. + .+.+.+|+++.+|.||.|.|...
T Consensus 196 ~~~~~l~~~--gV~v~~~~~v~~i~~----~----~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 196 LVLRLLARR--GIEVHEGAPVTRGPD----G----ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHC--CCEEEeCCeeEEEcC----C----eEEeCCCCEEecCEEEEccCCCh
Confidence 344455543 899999999988742 2 24557888999999999999765
No 345
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.75 E-value=0.00036 Score=55.85 Aligned_cols=64 Identities=20% Similarity=0.171 Sum_probs=48.4
Q ss_pred ehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCC-cEEEccEEEecCCCch-----------hhhhh
Q 044609 106 HRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDS-TIIKAKVLIGCDGVHS-----------MVAQW 171 (232)
Q Consensus 106 ~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g-~~~~a~~vV~A~G~~S-----------~~r~~ 171 (232)
....+++.|...+. +++++++++|+++ ++ .. +.+.+.++ ..+.||.||+|+|..| .+.+.
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~---~~-~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~ 157 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG---GT-LRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQ 157 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC---Cc-EEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHH
Confidence 45677888877764 8999999999999 22 23 66776543 4799999999999876 45677
Q ss_pred hcCC
Q 044609 172 LGLS 175 (232)
Q Consensus 172 ~~~~ 175 (232)
+|+.
T Consensus 158 lGh~ 161 (376)
T TIGR03862 158 RGVS 161 (376)
T ss_pred CCCc
Confidence 7766
No 346
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.74 E-value=0.00049 Score=55.03 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIK-ALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~ 38 (232)
..|+|||+|+.|+-+|..|.+.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 4799999999999999999999997 99998753
No 347
>PRK12831 putative oxidoreductase; Provisional
Probab=97.74 E-value=0.00059 Score=56.62 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
.+|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 589999999999999999999999999999754
No 348
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.72 E-value=3.7e-05 Score=64.11 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=33.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRL-GIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~-g~~v~viE~~~~~ 40 (232)
.+||.||||||-||+.+|..|++. ..+|+++|++..+
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 359999999999999999999986 6899999998765
No 349
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.72 E-value=5.5e-05 Score=59.17 Aligned_cols=36 Identities=31% Similarity=0.324 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGL 40 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~ 40 (232)
...|+|||+||||+.+|..|-++ +++|.|+|+.+.+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 36899999999999999999884 6899999999876
No 350
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.70 E-value=6.6e-05 Score=61.03 Aligned_cols=45 Identities=36% Similarity=0.471 Sum_probs=33.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeee
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALT 48 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~ 48 (232)
.+|||+|+|-|+.-+.+|..|++.|.+|+.+|+++.-+...+.+.
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~ 47 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLN 47 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhccc
Confidence 569999999999999999999999999999999998766555444
No 351
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=4.2e-05 Score=58.73 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=33.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
++..|-|||||.||.-+|++++++|++|.++|-++..
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 4567999999999999999999999999999987643
No 352
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.67 E-value=0.00082 Score=55.73 Aligned_cols=33 Identities=27% Similarity=0.512 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~ 38 (232)
.+|+|||+|..|+-+|..|++.|. +|+++++..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 589999999999999999999998 899998754
No 353
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.65 E-value=0.002 Score=52.80 Aligned_cols=35 Identities=43% Similarity=0.502 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRL----GIKALVLEKSDGL 40 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~----g~~v~viE~~~~~ 40 (232)
.+.=|||+|+|+|++|.+|-|. |-+|.|+|+.+.+
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~ 41 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP 41 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence 4678999999999999999985 5699999998755
No 354
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.64 E-value=0.0006 Score=55.06 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=35.4
Q ss_pred CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609 120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165 (232)
Q Consensus 120 ~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~ 165 (232)
++++++++.|+.+.... -.|.+.+|+++..+.+++|+|..
T Consensus 141 gIe~~~~t~v~~~D~~~------K~l~~~~Ge~~kys~LilATGs~ 180 (478)
T KOG1336|consen 141 GIELILGTSVVKADLAS------KTLVLGNGETLKYSKLIIATGSS 180 (478)
T ss_pred CceEEEcceeEEeeccc------cEEEeCCCceeecceEEEeecCc
Confidence 78999999999998764 45778999999999999999993
No 355
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.63 E-value=6.5e-05 Score=66.34 Aligned_cols=36 Identities=44% Similarity=0.601 Sum_probs=34.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~ 41 (232)
+.|+|||+||+||++|-+|.|.|+-|+|+||....+
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG 1821 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC
Confidence 689999999999999999999999999999998763
No 356
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=7.4e-05 Score=57.69 Aligned_cols=34 Identities=35% Similarity=0.524 Sum_probs=31.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
.+||.+|||||-+||+||...++.|.+|.++|--
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence 4699999999999999999999999999999954
No 357
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.59 E-value=9.6e-05 Score=57.27 Aligned_cols=37 Identities=32% Similarity=0.419 Sum_probs=33.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.+||.++||||-.|++.|...+..|.++.++|-.-..
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~l 55 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGL 55 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCc
Confidence 3599999999999999999999999999999976433
No 358
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.52 E-value=0.00023 Score=53.00 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=43.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC-------cceeeeecccHHHHHHHcCCh
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA-------TGAALTLSPNAWLALDALGVS 63 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~-------~~~~~~~~~~~~~~l~~~g~~ 63 (232)
+++|||+|..|.++|..|.+.|+.|+++|+++.... ..........-...|++.|+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC
Confidence 699999999999999999999999999999875421 122333444456778887764
No 359
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.50 E-value=0.00015 Score=50.90 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
+|.|+|||..|.++|..|+++|++|.++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999865
No 360
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.48 E-value=0.00021 Score=51.36 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
.|.|||+|..|...|..+++.|++|+++|+++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 489999999999999999999999999998754
No 361
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.47 E-value=0.0022 Score=54.61 Aligned_cols=59 Identities=15% Similarity=0.066 Sum_probs=43.5
Q ss_pred HHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe---CCCc--EEEccEEEecCCCchhh
Q 044609 108 QSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL---GDST--IIKAKVLIGCDGVHSMV 168 (232)
Q Consensus 108 ~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~---~~g~--~~~a~~vV~A~G~~S~~ 168 (232)
..+.+.|.+.+. +++++.++.++++..+++ |.. ..+.. .+|+ .+.|+.||+|+|.++.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v-~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAV-VGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCC-CeE-EEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 457777776653 789999999999987532 454 44433 4564 67899999999998854
No 362
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.41 E-value=0.0025 Score=56.27 Aligned_cols=33 Identities=21% Similarity=0.502 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIK-ALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~ 38 (232)
.+|+|||||..|+-+|..+.+.|.+ |+++++.+
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 5899999999999999999999997 99999764
No 363
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.40 E-value=0.00033 Score=55.05 Aligned_cols=38 Identities=32% Similarity=0.394 Sum_probs=34.5
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
|.+...+|+|||+|..|.++|..|++.|++|+++.|+.
T Consensus 1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 56666789999999999999999999999999999865
No 364
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.38 E-value=0.0003 Score=54.50 Aligned_cols=40 Identities=33% Similarity=0.482 Sum_probs=34.5
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
|.+.-..|.|||+|..|...|..+++.|++|+++|+.+..
T Consensus 1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 4443358999999999999999999999999999988654
No 365
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.37 E-value=0.0035 Score=53.36 Aligned_cols=33 Identities=36% Similarity=0.494 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
.+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 589999999999999999999999999999864
No 366
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.35 E-value=0.0021 Score=58.30 Aligned_cols=91 Identities=12% Similarity=0.150 Sum_probs=64.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (232)
.+|+|||+|+.|+-+|..|++.|. .|+|+|..+...
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~------------------------------------------- 354 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS------------------------------------------- 354 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh-------------------------------------------
Confidence 589999999999999999999996 578888653210
Q ss_pred ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCc-cEEEEe--CCCcEEEccEEEec
Q 044609 85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSS-AAIINL--GDSTIIKAKVLIGC 161 (232)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~-~~~v~~--~~g~~~~a~~vV~A 161 (232)
..+.+.|.+. +++++.++.|+.+..++ .. .+.+.. .+++++.||.|+.+
T Consensus 355 -----------------------~~l~~~L~~~--GV~i~~~~~v~~i~g~~---~v~~V~l~~~~g~~~~i~~D~V~va 406 (985)
T TIGR01372 355 -----------------------PEARAEAREL--GIEVLTGHVVAATEGGK---RVSGVAVARNGGAGQRLEADALAVS 406 (985)
T ss_pred -----------------------HHHHHHHHHc--CCEEEcCCeEEEEecCC---cEEEEEEEecCCceEEEECCEEEEc
Confidence 0022334332 78999999999987542 22 133332 24468999999999
Q ss_pred CCCchh
Q 044609 162 DGVHSM 167 (232)
Q Consensus 162 ~G~~S~ 167 (232)
.|...+
T Consensus 407 ~G~~Pn 412 (985)
T TIGR01372 407 GGWTPV 412 (985)
T ss_pred CCcCch
Confidence 998764
No 367
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.33 E-value=0.00071 Score=53.89 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=41.8
Q ss_pred CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC--chhhhhhhcCC
Q 044609 120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV--HSMVAQWLGLS 175 (232)
Q Consensus 120 ~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~--~S~~r~~~~~~ 175 (232)
|+.++-+..|.++.... ++ +.+.+.||.++..|+||+|.|. +|.+.+.-|++
T Consensus 407 GV~V~pna~v~sv~~~~--~n--l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLe 460 (659)
T KOG1346|consen 407 GVDVRPNAKVESVRKCC--KN--LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLE 460 (659)
T ss_pred Cceeccchhhhhhhhhc--cc--eEEEecCCCeeeeeeEEEEecCCCchhhcccccce
Confidence 78999999999998764 34 8889999999999999999996 45555544443
No 368
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.27 E-value=0.00052 Score=56.78 Aligned_cols=38 Identities=37% Similarity=0.734 Sum_probs=34.6
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
|.+....|+|+|+|.+|+.+|..|++.|++|+++|+..
T Consensus 1 ~~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 1 MELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 55556899999999999999999999999999999875
No 369
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.26 E-value=0.0053 Score=51.16 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=27.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~ 38 (232)
..|+|||+|..|+-+|..+.+.|. +|++++..+
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 579999999999999998888886 677666443
No 370
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.21 E-value=0.0014 Score=55.20 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
.+|+|||+|.+|+=.|..|++...+|.+.-|...
T Consensus 184 KrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 184 KRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp SEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred CEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 6899999999999999999999899998888754
No 371
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.18 E-value=0.0082 Score=54.13 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
.+|+|||||..|+-+|..+.|.|.+|+++.+.+
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 579999999999999999999999999998764
No 372
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.17 E-value=0.0004 Score=50.10 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=27.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
+|.|||.|-.|+.+|..||++|++|+.+|.++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 599999999999999999999999999998864
No 373
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.17 E-value=0.01 Score=51.55 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~ 38 (232)
.+|+|||+|..|+-+|..+.+.|. +|+++.+.+
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 479999999999999999999986 699988764
No 374
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.16 E-value=0.0006 Score=56.56 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
.|+|||.|++|+++|..|+++|++|+++|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987654
No 375
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.15 E-value=0.0043 Score=53.06 Aligned_cols=116 Identities=18% Similarity=0.215 Sum_probs=72.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHh---CCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609 4 VEEDVVIIGAGIAGLATAVALRR---LGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN 80 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~---~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 80 (232)
.+..++|||.|++|..+...+.+ .-++++++-..+.+...- +....
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~R-------------------------------i~Ls~ 50 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNR-------------------------------ILLSS 50 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccc-------------------------------eeecc
Confidence 34689999999999999998887 346888886655442110 00000
Q ss_pred cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEe
Q 044609 81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG 160 (232)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~ 160 (232)
...+.. .....++.+ .++..+. +++++.+.+|+.+..++ -.|.+.+|.++.+|-+|+
T Consensus 51 vl~~~~------------~~edi~l~~---~dwy~~~--~i~L~~~~~v~~idr~~------k~V~t~~g~~~~YDkLil 107 (793)
T COG1251 51 VLAGEK------------TAEDISLNR---NDWYEEN--GITLYTGEKVIQIDRAN------KVVTTDAGRTVSYDKLII 107 (793)
T ss_pred ccCCCc------------cHHHHhccc---hhhHHHc--CcEEEcCCeeEEeccCc------ceEEccCCcEeecceeEE
Confidence 000000 000001111 1223332 79999999999998764 447788999999999999
Q ss_pred cCCCchhhhhhhc
Q 044609 161 CDGVHSMVAQWLG 173 (232)
Q Consensus 161 A~G~~S~~r~~~~ 173 (232)
|+|....+-..-|
T Consensus 108 ATGS~pfi~PiPG 120 (793)
T COG1251 108 ATGSYPFILPIPG 120 (793)
T ss_pred ecCccccccCCCC
Confidence 9999876544333
No 376
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.14 E-value=0.0012 Score=54.59 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
.+|+|||+|.+|+=+|..|++.+.+|+++.|..
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 589999999999999999999999999998864
No 377
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.14 E-value=0.00085 Score=52.64 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
..|.|||+|..|...|..+++.|++|+++|+.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998764
No 378
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.11 E-value=0.0011 Score=46.22 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=29.3
Q ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 8 VVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 8 V~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
|+|+|+|..|+..|..|++.|.+|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999865
No 379
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.09 E-value=0.00075 Score=52.93 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
+|.|||+|..|..+|..|+++|++|+++|+.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999998764
No 380
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.08 E-value=0.012 Score=49.05 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~ 39 (232)
..|+|||+|..|+-+|..+.+.|. +|+|+++.+.
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 589999999999999999999985 7999998653
No 381
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.07 E-value=0.00095 Score=51.67 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=31.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
+|.|||+|..|..+|..|+++|++|+++|+++..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~ 38 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAA 38 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHH
Confidence 6999999999999999999999999999987543
No 382
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.06 E-value=0.00093 Score=51.99 Aligned_cols=34 Identities=29% Similarity=0.322 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
.+|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998753
No 383
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.05 E-value=0.00094 Score=55.74 Aligned_cols=33 Identities=39% Similarity=0.634 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
.+|+|||+|.+|+.+|..|+++|.+|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999765
No 384
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.04 E-value=0.0011 Score=51.47 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
..|.|||+|..|..+|..|+++|++|.++|+++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3699999999999999999999999999998753
No 385
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.02 E-value=0.012 Score=51.13 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~ 38 (232)
.+|+|||+|..|+-+|..|.+.|. +|+|+++..
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 589999999999999999999987 599998765
No 386
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.01 E-value=0.013 Score=52.74 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhC-C-CcEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRL-G-IKALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~-g-~~v~viE~~~ 38 (232)
.+|+|||||.+|+-+|..+.+. | .+|+++.+.+
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 5899999999999999988887 5 4899999875
No 387
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.00 E-value=0.0011 Score=54.15 Aligned_cols=37 Identities=27% Similarity=0.429 Sum_probs=33.4
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
|.+ ..|.|||.|..|+.+|..|+++|++|+.+|+++.
T Consensus 1 m~~--~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 1 MSF--ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred CCc--cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 664 4699999999999999999999999999998764
No 388
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.94 E-value=0.0015 Score=51.10 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
.+|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 369999999999999999999999999999964
No 389
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.92 E-value=0.0022 Score=50.54 Aligned_cols=40 Identities=18% Similarity=0.370 Sum_probs=34.2
Q ss_pred CCccc-ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCC
Q 044609 1 MEMVE-EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDGL 40 (232)
Q Consensus 1 m~~~~-~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~~ 40 (232)
|+|.+ .+|+|||+|..|.++|..++..|+ +++++|.++..
T Consensus 1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 55533 689999999999999999999996 89999987754
No 390
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.91 E-value=0.0014 Score=50.98 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
+|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 699999999999999999999999999998764
No 391
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.90 E-value=0.0021 Score=54.85 Aligned_cols=105 Identities=24% Similarity=0.351 Sum_probs=72.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCce
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGAT 86 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (232)
.-+|||||.-|+-+|..|.+.|.++.+++=.+.+ ++ ++| +
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l-------------Me--rQL---------------------D---- 186 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL-------------ME--RQL---------------------D---- 186 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecchH-------------HH--Hhh---------------------h----
Confidence 4689999999999999999999999999854422 00 000 0
Q ss_pred eEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch
Q 044609 87 QELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS 166 (232)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S 166 (232)
-.-..+++...+.. +++++.+...+.+... +.. ..+.++||..+.||+||-|+|...
T Consensus 187 ------------------~~ag~lL~~~le~~-Gi~~~l~~~t~ei~g~---~~~-~~vr~~DG~~i~ad~VV~a~GIrP 243 (793)
T COG1251 187 ------------------RTAGRLLRRKLEDL-GIKVLLEKNTEEIVGE---DKV-EGVRFADGTEIPADLVVMAVGIRP 243 (793)
T ss_pred ------------------hHHHHHHHHHHHhh-cceeecccchhhhhcC---cce-eeEeecCCCcccceeEEEeccccc
Confidence 01122333333321 7788888777766653 344 889999999999999999999865
Q ss_pred --hhhhhhcC
Q 044609 167 --MVAQWLGL 174 (232)
Q Consensus 167 --~~r~~~~~ 174 (232)
.+.+..|+
T Consensus 244 n~ela~~aGl 253 (793)
T COG1251 244 NDELAKEAGL 253 (793)
T ss_pred ccHhHHhcCc
Confidence 45555554
No 392
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.87 E-value=0.0017 Score=50.47 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
..|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999998764
No 393
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0025 Score=49.99 Aligned_cols=40 Identities=30% Similarity=0.385 Sum_probs=36.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcc
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATG 44 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~ 44 (232)
.|||+|+|-|+.=+.++..|+..|.+|+.||+++.-+...
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~ 45 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTS 45 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccc
Confidence 5999999999999999999999999999999998765443
No 394
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.83 E-value=0.0022 Score=44.96 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=29.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEe
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLE 35 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE 35 (232)
...|+|||||..|...|..|.+.|.+|+||.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 3689999999999999999999999999995
No 395
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.79 E-value=0.0031 Score=49.54 Aligned_cols=39 Identities=28% Similarity=0.487 Sum_probs=33.9
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG 39 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~ 39 (232)
|+....+|+|||+|-.|.++|+.|+..++ ++.++|....
T Consensus 2 ~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 2 MKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 45556899999999999999999999988 7999998654
No 396
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.78 E-value=0.0025 Score=50.06 Aligned_cols=38 Identities=29% Similarity=0.615 Sum_probs=32.9
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
|+.. .+|.|||+|..|..+|..|++.|++|+++|+++.
T Consensus 1 ~~~~-~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 1 MNPI-QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred CCCc-cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 5543 4799999999999999999999999999998653
No 397
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.77 E-value=0.0027 Score=46.41 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~ 38 (232)
...|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999999999999999999999 699999873
No 398
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.77 E-value=0.0024 Score=43.61 Aligned_cols=34 Identities=35% Similarity=0.505 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~ 38 (232)
+..|+|+|+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999999999 799999875
No 399
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.72 E-value=0.0014 Score=42.47 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=31.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
....|+|||||..|..-+..|.+.|.+|+++.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 45789999999999999999999999999998764
No 400
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.71 E-value=0.0027 Score=49.61 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
+|+|||+|..|..+|..|++.|++|++++|++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 49999999999999999999999999999854
No 401
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.68 E-value=0.0029 Score=49.51 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEec
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEK 36 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~ 36 (232)
+|+|+|+|..|.++|..|++.|++|++++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 499999999999999999999999999998
No 402
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.68 E-value=0.0035 Score=46.02 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
...|+|||||.+|...+..|.+.|.+|+|+.+..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3689999999999999999999999999998754
No 403
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.67 E-value=0.0032 Score=46.09 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=30.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
....|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3468999999999999999999999999999864
No 404
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.66 E-value=0.0041 Score=51.47 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=35.3
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
|++....|+|+|.|.+|+++|..|+++|.+|++.|..+.+
T Consensus 1 ~~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 1 MTFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 6666678999999999999999999999999999976543
No 405
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.64 E-value=0.0032 Score=52.69 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=33.0
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
|.+ -.+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus 1 ~~~-i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 1 MTM-IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CCC-cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 443 24799999999999999999999999999998654
No 406
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.64 E-value=0.0034 Score=48.94 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
..|.|||+|..|..+|..|++.|++|.++|+++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999998754
No 407
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.64 E-value=0.0034 Score=50.00 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
+|.|||+|..|...|..|++.|++|++++|.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 5999999999999999999999999999985
No 408
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.64 E-value=0.032 Score=50.52 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhC-CC-cEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRL-GI-KALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~-g~-~v~viE~~~ 38 (232)
.+|+|||||..|+-+|..+.+. |. +|+++++..
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 5899999999999999998886 75 799999865
No 409
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.63 E-value=0.011 Score=48.18 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=33.4
Q ss_pred CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609 120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM 167 (232)
Q Consensus 120 ~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~ 167 (232)
++.+..+++|+++.... -.+.+.+| .+.+|.+|+|+|....
T Consensus 67 ~i~~~~~~~v~~id~~~------~~v~~~~g-~~~yd~LvlatGa~~~ 107 (415)
T COG0446 67 GIDVRTGTEVTSIDPEN------KVVLLDDG-EIEYDYLVLATGARPR 107 (415)
T ss_pred CCEEeeCCEEEEecCCC------CEEEECCC-cccccEEEEcCCCccc
Confidence 78899999999997663 34566777 7899999999998754
No 410
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.59 E-value=0.004 Score=41.13 Aligned_cols=32 Identities=38% Similarity=0.553 Sum_probs=28.8
Q ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 8 VVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 8 V~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
|+|+|.|..|..++..|.+.+.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999999864
No 411
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=96.59 E-value=0.0036 Score=52.51 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=32.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
..|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 6799999999999999999999999999998865
No 412
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.59 E-value=0.0032 Score=49.98 Aligned_cols=33 Identities=27% Similarity=0.602 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
+|.|||.|-+||+.|..|++.|++|+.+|.++.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 599999999999999999999999999998864
No 413
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.57 E-value=0.0047 Score=48.95 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
.+|.|||+|..|..+|..|++.|++|++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999964
No 414
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.56 E-value=0.0048 Score=47.11 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG 39 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~ 39 (232)
...|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 4689999999999999999999996 8999997754
No 415
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.53 E-value=0.0046 Score=48.47 Aligned_cols=33 Identities=33% Similarity=0.548 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~ 39 (232)
+|.|||+|.+|.++|+.|+++|+ ++.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 59999999999999999999994 7999998764
No 416
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.53 E-value=0.0052 Score=48.22 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=32.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
...+|.|||+|..|.++|..|++.|++|.+++|...
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 345799999999999999999999999999998764
No 417
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.52 E-value=0.0054 Score=47.99 Aligned_cols=33 Identities=30% Similarity=0.573 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~ 39 (232)
+|.|||+|..|..+|..|+.+|+ +|+++|..+.
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 69999999999999999999887 8999998554
No 418
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.49 E-value=0.028 Score=45.26 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=31.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
.+..|+|+|.|.+|.++...|-..-++|+++..+..
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny 89 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY 89 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccc
Confidence 357899999999999999999888899999986543
No 419
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.49 E-value=0.0078 Score=41.08 Aligned_cols=34 Identities=38% Similarity=0.535 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIK-ALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~ 38 (232)
...|+|||+|-+|.+++..|++.|.+ ++|+.|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 46899999999999999999999987 99999864
No 420
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.45 E-value=0.016 Score=46.50 Aligned_cols=131 Identities=21% Similarity=0.238 Sum_probs=76.1
Q ss_pred cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHH--hhccCceeeEEEE
Q 044609 5 EEDVVIIGAGIAGLATAVALRR--LGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLT--SVYAPAKRVFVTN 80 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~--~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~~~ 80 (232)
+...+|||+|.+-.+++..... .+.+|++|-..+....- .|. +...+. ..-.+.....+..
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYm------RPP---------LSKELW~~~dpn~~k~lrfkq 242 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYM------RPP---------LSKELWWYGDPNSAKKLRFKQ 242 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCccc------CCC---------cchhceecCCCChhhheeecc
Confidence 3568999999987776665544 36788888655443110 000 000000 0111112222222
Q ss_pred cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEe
Q 044609 81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG 160 (232)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~ 160 (232)
.++....+-| .+..+++++.+|-+... .|+-+..+.+|..+..++ -.|.+.||.++.+|-.++
T Consensus 243 -wsGkeRsiff-------epd~FfvspeDLp~~~n---GGvAvl~G~kvvkid~~d------~~V~LnDG~~I~YdkcLI 305 (659)
T KOG1346|consen 243 -WSGKERSIFF-------EPDGFFVSPEDLPKAVN---GGVAVLRGRKVVKIDEED------KKVILNDGTTIGYDKCLI 305 (659)
T ss_pred -cCCccceeEe-------cCCcceeChhHCccccc---CceEEEeccceEEeeccc------CeEEecCCcEeehhheee
Confidence 1233333333 33455677666554332 267899999999997664 347789999999999999
Q ss_pred cCCCchh
Q 044609 161 CDGVHSM 167 (232)
Q Consensus 161 A~G~~S~ 167 (232)
|+|....
T Consensus 306 ATG~~Pk 312 (659)
T KOG1346|consen 306 ATGVRPK 312 (659)
T ss_pred ecCcCcc
Confidence 9998754
No 421
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.44 E-value=0.0058 Score=50.57 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=33.6
Q ss_pred CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
|......|+|+|+|.+|+++|..|++.|.+|++.|+..
T Consensus 1 ~~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 1 TEYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 55545679999999999999999999999999999765
No 422
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.43 E-value=0.0054 Score=48.53 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
+|.|||+|..|.++|..|++.|++|.++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 49999999999999999999999999999864
No 423
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.43 E-value=0.053 Score=49.51 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=28.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIK-ALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~ 38 (232)
.+|+|||||..|+=+|..+.|.|.+ |+++.+..
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~ 605 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS 605 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 5899999999999999999999985 67777543
No 424
>PRK13984 putative oxidoreductase; Provisional
Probab=96.43 E-value=0.038 Score=47.67 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=24.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC------cEEEEe
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGI------KALVLE 35 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~------~v~viE 35 (232)
.+|+|||||..|+=+|..|++.+. +|+++.
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 589999999999999999998753 566653
No 425
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.40 E-value=0.0061 Score=48.36 Aligned_cols=34 Identities=44% Similarity=0.629 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~ 38 (232)
...|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4689999999999999999999998 899999875
No 426
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=96.38 E-value=0.0054 Score=51.37 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=32.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
..|.|||+|..|..+|..|++.|++|+++|+.+..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~ 40 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA 40 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 57999999999999999999999999999988643
No 427
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.37 E-value=0.0077 Score=42.54 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
+|.+||.|..|..+|..|.++|++|.++|+.+.
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 799999999999999999999999999998753
No 428
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.37 E-value=0.0095 Score=40.97 Aligned_cols=33 Identities=30% Similarity=0.561 Sum_probs=29.6
Q ss_pred cEEEECC-CHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609 7 DVVIIGA-GIAGLATAVALRRLGI--KALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~-G~~G~~~A~~L~~~g~--~v~viE~~~~ 39 (232)
+|.|||+ |..|.++|+.|...++ ++.++|..+.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 6999999 9999999999999875 7999998754
No 429
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.36 E-value=0.0055 Score=41.79 Aligned_cols=32 Identities=31% Similarity=0.387 Sum_probs=28.1
Q ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 8 VVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 8 V~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
++|+|+|+.+.++|..++..|++|+++|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998865
No 430
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.34 E-value=0.0095 Score=42.22 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=30.4
Q ss_pred cccEEEECCCH-HHHHHHHHHHhCCCcEEEEecCC
Q 044609 5 EEDVVIIGAGI-AGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~-~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
..+|+|||+|- +|..+|..|.++|.+|+++.|..
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 47899999996 69999999999999999999863
No 431
>PRK04148 hypothetical protein; Provisional
Probab=96.32 E-value=0.0044 Score=41.87 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
.+|++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 469999999 999999999999999999998764
No 432
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.31 E-value=0.009 Score=42.44 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
..|+|+|+|.+|..+|..|.+.|.+|+++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 689999999999999999999999999999764
No 433
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.30 E-value=0.0055 Score=50.15 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
+|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 599999999999999999999999999998764
No 434
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.27 E-value=0.0069 Score=48.75 Aligned_cols=33 Identities=33% Similarity=0.500 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
.+|+|+|+|.+|+.+|..|.+.|.+|+++|+.+
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 579999999999999999999999999999864
No 435
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.25 E-value=0.0093 Score=43.73 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~ 38 (232)
+..|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 4689999999999999999999998 899999864
No 436
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.25 E-value=0.0099 Score=42.48 Aligned_cols=32 Identities=34% Similarity=0.373 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGI-KALVLEKSD 38 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~ 38 (232)
+|+|||+|-.|...|..|++.|+ +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999999 599999864
No 437
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.23 E-value=0.009 Score=47.44 Aligned_cols=34 Identities=41% Similarity=0.640 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~ 38 (232)
..+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4689999999999999999999999 899999874
No 438
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.23 E-value=0.0078 Score=47.55 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
+|.|||+|..|..+|..|++.|++|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 439
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0028 Score=50.21 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=37.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA 45 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~ 45 (232)
.+|||+|+|-|..=+.++..|+..|.+|+.+||++.-+....
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sa 44 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESA 44 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccc
Confidence 459999999999999999999999999999999987654443
No 440
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.0078 Score=47.99 Aligned_cols=46 Identities=33% Similarity=0.417 Sum_probs=41.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeec
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLS 50 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~ 50 (232)
+|||+|||-|..=..+|.+.+|.|.+|+-+|+++..+.....+.+.
T Consensus 8 ~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 8 EFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred hccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 5999999999999999999999999999999999887766666554
No 441
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.18 E-value=0.0069 Score=46.82 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
+|.|||.|..|.++|..|.++|++|.++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999999999999999999999999999864
No 442
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.17 E-value=0.011 Score=44.64 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG 39 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~ 39 (232)
..+|+|||+|-.|..+|..|++.|+ +++++|.+..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 3689999999999999999999998 7889998754
No 443
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.14 E-value=0.012 Score=40.54 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~ 39 (232)
.|+|||+|-.|..+|..|++.|+ +++++|.+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 48999999999999999999998 7999997753
No 444
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.13 E-value=0.11 Score=45.31 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~ 39 (232)
.+|+|||+|..|+-+|..+.+.|. +|+++++.+.
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE 486 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 589999999999999998888885 7999987643
No 445
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.12 E-value=0.01 Score=48.29 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
..|+|+|+|+.|+.+|..+...|.+|+++|.++.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 5899999999999999999999999999998754
No 446
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.11 E-value=0.012 Score=46.25 Aligned_cols=33 Identities=27% Similarity=0.441 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~ 39 (232)
+|+|||+|..|..+|..++..|+ ++.++|..+.
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 79999999999999999999876 9999998654
No 447
>PLN02602 lactate dehydrogenase
Probab=96.10 E-value=0.013 Score=46.60 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~ 39 (232)
.+|+|||+|-.|.++|+.|+.+++ ++.|+|....
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~ 73 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD 73 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence 699999999999999999998876 6999998654
No 448
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.08 E-value=0.013 Score=43.21 Aligned_cols=34 Identities=35% Similarity=0.398 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~ 38 (232)
...|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4689999999999999999999999 499999864
No 449
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.07 E-value=0.013 Score=44.43 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~ 38 (232)
+.+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4689999999999999999999998 789999774
No 450
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.06 E-value=0.0091 Score=49.83 Aligned_cols=35 Identities=34% Similarity=0.493 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
..+|+|+|+|++|+.++..+...|.+|.++|.++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 36899999999999999999999999999998754
No 451
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.03 E-value=0.013 Score=46.02 Aligned_cols=33 Identities=36% Similarity=0.563 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~ 39 (232)
+|+|||+|-+|.++|+.|+.+|+ ++.++|+.+.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 59999999999999999999984 7999998764
No 452
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.99 E-value=0.01 Score=51.96 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
..|.|||+|..|...|..+++.|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998764
No 453
>PRK08328 hypothetical protein; Provisional
Probab=95.98 E-value=0.014 Score=43.69 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG 39 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~ 39 (232)
...|+|||+|-.|..+|..|++.|+ +++++|.+..
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4689999999999999999999998 6889987653
No 454
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.96 E-value=0.012 Score=46.06 Aligned_cols=32 Identities=31% Similarity=0.476 Sum_probs=29.1
Q ss_pred EEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609 8 VVIIGAGIAGLATAVALRRLGI-KALVLEKSDG 39 (232)
Q Consensus 8 V~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~ 39 (232)
|.|||+|.+|..+|..|+.+++ +|+++|.++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 5899999999999999999877 9999999864
No 455
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=95.96 E-value=0.012 Score=45.68 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
..|.|||||..|...|..++..|++|+++|.+..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~ 37 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE 37 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence 5799999999999999999997899999999853
No 456
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.95 E-value=0.015 Score=43.54 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~ 38 (232)
...|+|||+|-.|...|..|++.|+ +++++|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4689999999999999999999998 788998775
No 457
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.95 E-value=0.012 Score=46.18 Aligned_cols=38 Identities=34% Similarity=0.562 Sum_probs=31.7
Q ss_pred CCccc-ccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609 1 MEMVE-EDVVIIGAGIAGLATAVALRRLGI--KALVLEKSD 38 (232)
Q Consensus 1 m~~~~-~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~ 38 (232)
|+.+. .+|.|||+|..|.++|..|.+.|. +|.++++.+
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 44333 579999999999999999999885 899999864
No 458
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.94 E-value=0.015 Score=49.55 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=31.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
-.|+|+|+|..|..+|..|.++|++++++|+++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 5789999999999999999999999999999864
No 459
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=95.94 E-value=0.011 Score=51.68 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=32.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
..|.|||||..|...|..+++.|++|+++|.+...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS 348 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 46999999999999999999999999999987643
No 460
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.91 E-value=0.018 Score=45.22 Aligned_cols=35 Identities=20% Similarity=0.537 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG 39 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~ 39 (232)
+.+|.|||+|-.|.++|+.|+..++ ++.|+|..+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~ 39 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 4589999999999999999999876 6899998653
No 461
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=95.90 E-value=0.0098 Score=43.61 Aligned_cols=34 Identities=24% Similarity=0.467 Sum_probs=32.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
..|.|||||..|.-.|-..+..|+.|.++|++..
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 6899999999999999999999999999999864
No 462
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.89 E-value=0.016 Score=43.10 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=29.2
Q ss_pred cEEEEC-CCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 7 DVVIIG-AGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 7 dV~IvG-~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
+|.||| +|..|.++|..|++.|++|.+++|++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 499997 79999999999999999999998865
No 463
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.84 E-value=0.021 Score=41.77 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
..|+|+|.|-.|..+|..|.+.|.+|++.|+++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 579999999999999999999999999998763
No 464
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.83 E-value=0.0079 Score=45.16 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=27.2
Q ss_pred EEEECCCHHHHHHHHHHHhC--CCcEEEEecCCC
Q 044609 8 VVIIGAGIAGLATAVALRRL--GIKALVLEKSDG 39 (232)
Q Consensus 8 V~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~ 39 (232)
.+|||||+||.+||-.|+.. ..+|+++-..+.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 68999999999999999985 458888877654
No 465
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.81 E-value=0.019 Score=41.87 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~ 38 (232)
...|+|||+|..|+..|..|++.|+ +++++|.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4689999999999999999999999 588999774
No 466
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.79 E-value=0.019 Score=42.93 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~ 38 (232)
...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999999999999999999998 889999775
No 467
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.79 E-value=0.02 Score=41.80 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~ 38 (232)
+..|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4689999999999999999999998 589999764
No 468
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.78 E-value=0.022 Score=44.98 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLG-IKALVLEKSDG 39 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~ 39 (232)
..+|+|||+|..|.++|..|+..| .++.++|.++.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG 40 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence 468999999999999999999998 58999998764
No 469
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=95.77 E-value=0.014 Score=47.35 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~ 40 (232)
+|.|||.|..|+.+|..++. |++|+++|+++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k 34 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR 34 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence 49999999999999988885 9999999998653
No 470
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.76 E-value=0.015 Score=45.57 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
+|.|+|+|..|...|+.|++.|.+|+++-|.+.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 599999999999999999999988888888764
No 471
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=95.76 E-value=0.012 Score=51.62 Aligned_cols=34 Identities=21% Similarity=0.440 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
..|.|||+|..|...|..++..|++|+++|.++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 4699999999999999999999999999998764
No 472
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.74 E-value=0.23 Score=41.68 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhC
Q 044609 6 EDVVIIGAGIAGLATAVALRRL 27 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~ 27 (232)
.+|+|||+|..|+-+|..|.+.
T Consensus 167 k~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 167 DTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 5799999999999999999876
No 473
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.74 E-value=0.015 Score=43.78 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=31.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCC-----------CcEEEEecCCC
Q 044609 4 VEEDVVIIGAGIAGLATAVALRRLG-----------IKALVLEKSDG 39 (232)
Q Consensus 4 ~~~dV~IvG~G~~G~~~A~~L~~~g-----------~~v~viE~~~~ 39 (232)
+..+|+|||+|-.|+.++..|++.| .+++|+|.+.-
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 4579999999999999999999974 38999998753
No 474
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.74 E-value=0.019 Score=44.51 Aligned_cols=33 Identities=42% Similarity=0.571 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~ 38 (232)
.+|+|+|+|-+|.++|..|++.|. +|+|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 579999999999999999999998 799999874
No 475
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.74 E-value=0.021 Score=44.78 Aligned_cols=33 Identities=30% Similarity=0.556 Sum_probs=29.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~ 39 (232)
+|.|||+|..|.++|+.|..+++ ++.|+|....
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~ 35 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEG 35 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 48999999999999999999887 6999998653
No 476
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=95.73 E-value=0.014 Score=45.44 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
+|.|||.|..|..+|..|++.|++|+++++.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~ 33 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE 33 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 488999999999999999999999999998753
No 477
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.71 E-value=0.017 Score=47.84 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=31.1
Q ss_pred CCccc-ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 1 MEMVE-EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 1 m~~~~-~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
|+.+. ..|+|+|.|.+|.++|..|.+ |.+|++.|..+
T Consensus 1 ~~~~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~ 38 (454)
T PRK01368 1 MNSHTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLK 38 (454)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCC
Confidence 44433 689999999999999999995 99999999653
No 478
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.69 E-value=0.022 Score=42.50 Aligned_cols=34 Identities=41% Similarity=0.547 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIK---ALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~---v~viE~~~ 38 (232)
..+|+|+|+|-+|...|..|.+.|.+ +.+++|..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 36899999999999999999999985 99999974
No 479
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.67 E-value=0.096 Score=42.07 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=33.0
Q ss_pred CCeEEeCceEEEEEecCCCCCccEEEEeCC---C--cEEEccEEEecCCCch
Q 044609 120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGD---S--TIIKAKVLIGCDGVHS 166 (232)
Q Consensus 120 ~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~---g--~~~~a~~vV~A~G~~S 166 (232)
.+.++.+++|.+++...+ |. +.+.+.. + .+++.|.||+|||-.-
T Consensus 292 ~v~l~~~~ev~~~~~~G~-g~--~~l~~~~~~~~~~~t~~~D~vIlATGY~~ 340 (436)
T COG3486 292 DVRLLSLSEVQSVEPAGD-GR--YRLTLRHHETGELETVETDAVILATGYRR 340 (436)
T ss_pred CeeeccccceeeeecCCC-ce--EEEEEeeccCCCceEEEeeEEEEeccccc
Confidence 578999999999988753 32 5555432 2 4889999999999874
No 480
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.64 E-value=0.026 Score=42.34 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=34.2
Q ss_pred CCcccccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 1 MEMVEEDVVIIGA-GIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 1 m~~~~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
|+|+...|+|.|| |..|..+|..|+++|++|+++.|++.
T Consensus 1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~ 40 (246)
T PRK05653 1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE 40 (246)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence 6666678999997 89999999999999999999998754
No 481
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.62 E-value=0.019 Score=47.72 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRL--GIKALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~ 39 (232)
+|.|||.|-.|+.+|..|+++ |++|+.+|.++.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 599999999999999999998 478999998764
No 482
>PRK08223 hypothetical protein; Validated
Probab=95.62 E-value=0.024 Score=43.67 Aligned_cols=35 Identities=31% Similarity=0.320 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG 39 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~ 39 (232)
...|+|||+|-.|..+|..|++.|+ ++.++|.+..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 4689999999999999999999998 7889997753
No 483
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=95.60 E-value=0.026 Score=42.69 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
...++|+|+|+.+..+|..+...|++|+++|.++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 46899999999999999999999999999997755
No 484
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.59 E-value=0.024 Score=45.58 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLG-IKALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~ 39 (232)
+|+|||+|-.|.+.|..|++++ .+|++.+|...
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 7999999999999999999999 89999999843
No 485
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.59 E-value=0.02 Score=44.61 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
+|.|||.|..|..+|..|++.|++|.++++++.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~ 36 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE 36 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 699999999999999999999999999998653
No 486
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.57 E-value=0.022 Score=47.92 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
...|.|+|.|-+|+++|..|.++|++|.+.|...
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999754
No 487
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.56 E-value=0.025 Score=44.12 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
..+|+|+|.|.+|..+|..|.+.|.+|+++++.+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999999999999999999999999999874
No 488
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.55 E-value=0.022 Score=47.42 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
..|+|+|.|.+|+++|..|.+.|++|++.|+.+.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 4799999999999999999999999999997653
No 489
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.53 E-value=0.023 Score=44.37 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
+|.|||.|..|..+|..|+++|++|.++++.+.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~ 35 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQ 35 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 699999999999999999999999999998754
No 490
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.53 E-value=0.023 Score=39.75 Aligned_cols=33 Identities=42% Similarity=0.540 Sum_probs=27.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
..++|+|-|..|..+|..|...|.+|+|.|.++
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 579999999999999999999999999999976
No 491
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.53 E-value=0.027 Score=35.74 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCC---CcEEEE-ecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLG---IKALVL-EKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g---~~v~vi-E~~~~ 39 (232)
+|.|||+|-.|.+++..|.+.| .+|.++ +|++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPE 37 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHH
Confidence 4789999999999999999999 889866 77653
No 492
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.53 E-value=0.024 Score=45.96 Aligned_cols=35 Identities=29% Similarity=0.411 Sum_probs=31.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
...|+|+|.|+.|..+|..+...|.+|+++|.++.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 35899999999999999999999999999998764
No 493
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.51 E-value=0.023 Score=46.70 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
..|+|||-|.+|.++|..|.++|.+|...|+...
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4799999999999999999999999999997653
No 494
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.50 E-value=0.032 Score=48.06 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=31.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
..|+|+|.|..|..+|..|.++|++++++|+++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~ 434 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDIS 434 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHH
Confidence 5799999999999999999999999999999864
No 495
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.49 E-value=0.021 Score=47.33 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609 7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39 (232)
Q Consensus 7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~ 39 (232)
+|+|+|+|..|..+|..|.++|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 599999999999999999999999999998654
No 496
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.49 E-value=0.018 Score=50.54 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHH-hCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALR-RLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~-~~g~~v~viE~~~~ 39 (232)
..|.|||+|..|...|..++ +.|++|+++|.++.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~ 344 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ 344 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence 47999999999999999999 88999999998653
No 497
>PLN02240 UDP-glucose 4-epimerase
Probab=95.49 E-value=0.033 Score=44.43 Aligned_cols=37 Identities=24% Similarity=0.478 Sum_probs=33.3
Q ss_pred CCcccccEEEECC-CHHHHHHHHHHHhCCCcEEEEecC
Q 044609 1 MEMVEEDVVIIGA-GIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 1 m~~~~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
|+++...|+|.|| |..|..++..|.++|++|+++++.
T Consensus 1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~ 38 (352)
T PLN02240 1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNL 38 (352)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 6777788999997 999999999999999999999864
No 498
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.49 E-value=0.021 Score=47.84 Aligned_cols=33 Identities=33% Similarity=0.577 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609 6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~ 38 (232)
..|+|+|.|.+|++++..|.++|.+|++.|+.+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 579999999999999999999999999999653
No 499
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.44 E-value=0.038 Score=40.21 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=29.9
Q ss_pred cccEEEECC-CHHHHHHHHHHHhCCCcEEEEecC
Q 044609 5 EEDVVIIGA-GIAGLATAVALRRLGIKALVLEKS 37 (232)
Q Consensus 5 ~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~ 37 (232)
...++|+|| |..|..+|..|++.|.+|.++.|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999997 999999999999999999999876
No 500
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=95.43 E-value=0.021 Score=49.99 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHH-hCCCcEEEEecCCC
Q 044609 6 EDVVIIGAGIAGLATAVALR-RLGIKALVLEKSDG 39 (232)
Q Consensus 6 ~dV~IvG~G~~G~~~A~~L~-~~g~~v~viE~~~~ 39 (232)
..|.|||+|..|...|..++ +.|++|+++|.++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 46999999999999999998 58999999998754
Done!