BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044614
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 5/68 (7%)
Query: 75 LPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLT 134
+P+R+V ++ DFG GDG T +E+F++A+ + +GG +L VPEG++LTG +L
Sbjct: 23 IPDREV--NLLDFGARGDGRTDCSESFKRAI---EELSKQGGGRLIVPEGVFLTGPIHLK 77
Query: 135 SNFTLFLE 142
SN L ++
Sbjct: 78 SNIELHVK 85
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 5/70 (7%)
Query: 82 MSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFL 141
++++DFG + DG T NT+A ++A+ K G ++ +P G + +G+ L S+ TL L
Sbjct: 157 VNVRDFGAIDDGKTLNTKAIQQAIDSC-----KPGCRVEIPAGTYKSGALWLKSDMTLNL 211
Query: 142 ERGAVMLGSQ 151
+ GA++LGS+
Sbjct: 212 QAGAILLGSE 221
>pdb|1QHF|A Chain A, Yeast Phosphoglycerate Mutase-3pg Complex Structure To 1.7
A
pdb|1QHF|B Chain B, Yeast Phosphoglycerate Mutase-3pg Complex Structure To 1.7
A
Length = 240
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 62 PDSCAAGLLGDQYLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNV 121
P++ + L+ D+ LP + ++ G ++ + R V++++G D A+LN+
Sbjct: 146 PETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNI 205
Query: 122 PEGLWLTGSFNLTSNF 137
P G+ L F L N
Sbjct: 206 PTGIPLV--FELDENL 219
>pdb|4PGM|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|1BQ3|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ3|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ3|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ3|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ4|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ4|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ4|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ4|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|5PGM|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|F Chain F, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|G Chain G, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|H Chain H, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|E Chain E, Saccharomyces Cerevisiae Phosphoglycerate Mutase
Length = 246
Score = 32.7 bits (73), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 62 PDSCAAGLLGDQYLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNV 121
P++ + L+ D+ LP + ++ G ++ + R V++++G D A+LN+
Sbjct: 146 PETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNI 205
Query: 122 PEGLWLTGSFNLTSNF 137
P G+ L F L N
Sbjct: 206 PTGIPLV--FELDENL 219
>pdb|2VBK|A Chain A, Native Tailspike Protein Of Bacteriophage Sf6
pdb|2VBM|A Chain A, Tailspike Protein Of Bacteriophage Sf6 Complexed With
Tetrasaccharide
Length = 514
Score = 30.4 bits (67), Expect = 0.42, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 77 ERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVP 122
+ K A+SI DFG + DG T N +A + A+ + G +L +P
Sbjct: 47 KNKEAISILDFGVIDDGVTDNYQAIQNAIDAVASL--PSGGELFIP 90
>pdb|2VBE|A Chain A, Tailspike Protein Of Bacteriophage Sf6
Length = 514
Score = 30.4 bits (67), Expect = 0.43, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 77 ERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVP 122
+ K A+SI DFG + DG T N +A + A+ + G +L +P
Sbjct: 47 KNKEAISILDFGVIDDGVTDNYQAIQNAIDAVASL--PSGGELFIP 90
>pdb|3SUC|A Chain A, Crystal Structure Of The Pre-Mature Bacteriophage Phi29
Gene Product 12
Length = 772
Score = 29.6 bits (65), Expect = 0.62, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTG-SFNLTSN 136
++ +S+K +G GDG T + AF KA+ + G + VP G ++ L SN
Sbjct: 19 KQFGVSVKTYGAKGDGVTDDIRAFEKAI--------ESGFPVYVPYGTFMVSRGIKLPSN 70
Query: 137 FTL 139
L
Sbjct: 71 TVL 73
>pdb|3GQ7|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment
pdb|3GQ8|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment In Complex With
2-(N-Cyclohexylamino)ethane Sulfonic Acid (Ches)
pdb|3GQ9|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment In An Apo Form
pdb|3GQA|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment In Complex With Cobalt Ions
Length = 609
Score = 29.6 bits (65), Expect = 0.62, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTG-SFNLTSN 136
++ +S+K +G GDG T + AF KA+ + G + VP G ++ L SN
Sbjct: 19 KQFGVSVKTYGAKGDGVTDDIRAFEKAI--------ESGFPVYVPYGTFMVSRGIKLPSN 70
Query: 137 FTL 139
L
Sbjct: 71 TVL 73
>pdb|3IZO|F Chain F, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
pdb|3IZO|G Chain G, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
pdb|3IZO|H Chain H, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
Length = 581
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 89 GVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWL 127
G G T N + + V GF +G QLNV GL +
Sbjct: 223 ATGPGVTINNTSLQTKVTGALGFDSQGNMQLNVAGGLRI 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,324,879
Number of Sequences: 62578
Number of extensions: 167124
Number of successful extensions: 308
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 25
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)