BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044614
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001
PE=1 SV=1
Length = 491
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 56/74 (75%)
Query: 78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNF 137
R + S+ DFGGVGDG T NT+AF+ AV + +G +GGAQL VP G WLTGSF+LTS+F
Sbjct: 59 RAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHF 118
Query: 138 TLFLERGAVMLGSQ 151
TLFL R AV+L SQ
Sbjct: 119 TLFLHRDAVLLASQ 132
>sp|P15922|PEHX_ERWCH Exo-poly-alpha-D-galacturonosidase OS=Erwinia chrysanthemi GN=pehX
PE=1 SV=1
Length = 602
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 82 MSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFL 141
++I +G GDGTT NT A +KA+ G +++VP G++ TG+ L S+ TL L
Sbjct: 152 INITQYGAKGDGTTLNTSAIQKAIDAC-----PTGCRIDVPAGVFKTGALWLKSDMTLNL 206
Query: 142 ERGAVMLGS 150
+GA +LGS
Sbjct: 207 LQGATLLGS 215
>sp|O31980|YOME_BACSU SPBc2 prophage-derived uncharacterized protein YomE OS=Bacillus
subtilis (strain 168) GN=yomE PE=4 SV=1
Length = 644
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 77 ERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTS 135
E K ++ D G DG NT F+KA + +KGG +L+ P+G +L G N TS
Sbjct: 337 ESKPTWNVLDLGFSPDGLIDNTAKFKKA---LSDLSEKGGGKLHFPKGTYLIGKQNTTS 392
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2
Length = 433
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 82 MSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEG-LWLTGSFNLT 134
+S+ DFG GDG T +T+AF A + + G L VP+G +L S LT
Sbjct: 68 VSVSDFGAKGDGKTDDTQAFVNA--WKKACSSNGAVNLLVPKGNTYLLKSIQLT 119
>sp|P49426|EXG1_COCCA Glucan 1,3-beta-glucosidase OS=Cochliobolus carbonum GN=EXG1 PE=1
SV=1
Length = 788
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 76 PERKVAMSIKDFGGVGDGTTSNTEAFRKAV 105
P KV ++KD+G GDG T +++AF +A+
Sbjct: 65 PNYKVFRNVKDYGAKGDGVTDDSDAFNRAI 94
>sp|O34433|YOBO_BACSU Putative phage-related protein YobO OS=Bacillus subtilis (strain
168) GN=yobO PE=4 SV=1
Length = 806
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 82 MSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTL 139
+++ DFG V DG NTEAFRKA+ G +++VP G +L L S T+
Sbjct: 82 VNVADFGAVPDGR-DNTEAFRKAI-------GNGRVKVHVPAGEYLVQGIKLPSWTTI 131
>sp|Q37893|VG12_BPB03 Pre-neck appendage protein OS=Bacillus phage B103 GN=12 PE=4 SV=1
Length = 860
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 78 RKVAMSIKDFGGVGDGTTSNTEAFRKAV 105
++ +S+K +G VGDG T + EAF KA+
Sbjct: 100 KQFGVSVKTYGAVGDGKTDDIEAFEKAI 127
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana
GN=At3g15720 PE=1 SV=1
Length = 456
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 81 AMSIKDFGGVGDGTTSNTEAFRKAVRYM-QGFGDKGGAQLNVPEGL 125
A+ + FG VGDG T +++AF KA + G GD Q VP G+
Sbjct: 23 ALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGD---GQFVVPAGM 65
>sp|Q9Y7C2|CATB_AJECA Catalase B OS=Ajellomyces capsulatus GN=CATB PE=2 SV=1
Length = 728
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 43 SVLSPKR---VGFSGADGAIFDPDSCAAGLL---GDQYLPERKVAMSI------KDFGGV 90
S L P+R + +SGADG+IFD GLL QY R + + K G V
Sbjct: 610 SSLDPQRGVNMTYSGADGSIFDAVIVVGGLLTSASTQYPRGRPLRIITDAYAYGKPVGAV 669
Query: 91 GDGTTSNTEAFRKAVRYMQGFGDKGGAQLNV 121
GDG+ EA R + G G Q V
Sbjct: 670 GDGS---NEALRDVLMAAGGDASNGLDQPGV 697
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1
Length = 431
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 82 MSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEG 124
+S+ +FG GDG T +T+AF+KA + + G VP+G
Sbjct: 68 VSVSNFGAKGDGKTDDTQAFKKA--WKKACSTNGVTTFLVPKG 108
>sp|Q6NRS2|PQLC1_XENLA PQ-loop repeat-containing protein 1 OS=Xenopus laevis GN=pqlc1 PE=2
SV=1
Length = 250
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 16 NFSRPS-WATIVLIVTLITIFSL--EITKKSVLSPKRVGFSGADGAIF 60
+F P W +I++IVT++ + L E+ + L+PKR F+ D A F
Sbjct: 72 HFESPLLWQSIIMIVTMLLMLKLCTEVRVANELNPKRRSFTDFDTAFF 119
>sp|Q9XJP3|TSPE_BPSFV Bifunctional tail protein OS=Enterobacteria phage Sf6 PE=1 SV=2
Length = 623
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 77 ERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVP 122
+ K A+SI DFG + DG T N +A + A+ + G +L +P
Sbjct: 156 KNKEAISILDFGVIDDGVTDNYQAIQNAIDAVASL--PSGGELFIP 199
>sp|P07537|VG12_BPPZA Pre-neck appendage protein OS=Bacillus phage PZA GN=12 PE=4 SV=1
Length = 854
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVR 106
++ +S+K +G GDG T + +AF KA+
Sbjct: 101 KQFGVSVKTYGAKGDGVTDDIKAFEKAIE 129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,600,878
Number of Sequences: 539616
Number of extensions: 2278740
Number of successful extensions: 4552
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 4532
Number of HSP's gapped (non-prelim): 38
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)