Query 044614
Match_columns 151
No_of_seqs 227 out of 1215
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:01:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 99.7 3.3E-17 7.2E-22 144.6 7.9 68 78-150 24-96 (394)
2 PLN02793 Probable polygalactur 99.7 1.8E-16 3.9E-21 141.7 8.9 68 79-151 50-123 (443)
3 COG5434 PGU1 Endopygalactoruna 99.7 1.3E-16 2.9E-21 145.9 7.9 72 76-150 77-148 (542)
4 PF12708 Pectate_lyase_3: Pect 99.7 1.7E-16 3.8E-21 122.7 6.4 61 81-144 1-62 (225)
5 PLN02188 polygalacturonase/gly 99.6 3.5E-16 7.6E-21 138.4 8.4 65 77-150 32-103 (404)
6 PLN02218 polygalacturonase ADP 99.6 8E-16 1.7E-20 137.2 9.0 69 78-151 64-138 (431)
7 PLN03010 polygalacturonase 99.6 2.5E-15 5.4E-20 133.4 9.0 68 78-150 43-118 (409)
8 PLN03003 Probable polygalactur 99.4 3.2E-13 6.9E-18 121.7 7.7 55 78-135 20-76 (456)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.4 4.6E-13 1E-17 120.6 6.8 67 76-146 32-98 (455)
10 PF12218 End_N_terminal: N ter 95.5 0.018 4E-07 40.2 3.5 38 89-132 1-39 (67)
11 PLN02480 Probable pectinestera 92.8 0.87 1.9E-05 40.4 9.1 51 97-149 59-114 (343)
12 PF07602 DUF1565: Protein of u 89.1 0.69 1.5E-05 39.3 4.6 40 99-143 16-60 (246)
13 PF03718 Glyco_hydro_49: Glyco 88.4 0.68 1.5E-05 43.8 4.5 35 116-150 232-270 (582)
14 PLN02304 probable pectinestera 84.4 3.1 6.7E-05 37.6 6.3 49 98-148 87-140 (379)
15 PLN02432 putative pectinestera 82.0 4.6 9.9E-05 35.1 6.3 49 98-148 23-76 (293)
16 PLN02176 putative pectinestera 81.5 5 0.00011 35.7 6.4 44 98-143 51-97 (340)
17 PF14592 Chondroitinas_B: Chon 80.3 4.2 9E-05 37.3 5.7 42 97-143 3-50 (425)
18 PLN02671 pectinesterase 79.6 6.2 0.00013 35.4 6.4 43 98-142 71-116 (359)
19 PLN02773 pectinesterase 79.3 6.6 0.00014 34.5 6.4 44 98-143 17-63 (317)
20 PLN02713 Probable pectinestera 79.2 6.4 0.00014 37.1 6.7 52 98-150 262-320 (566)
21 PLN02170 probable pectinestera 78.6 6.8 0.00015 36.9 6.6 52 97-149 236-292 (529)
22 PLN02708 Probable pectinestera 78.5 6.7 0.00014 36.9 6.6 45 98-143 253-300 (553)
23 PLN02682 pectinesterase family 78.2 13 0.00028 33.5 8.0 44 98-143 82-128 (369)
24 PRK10531 acyl-CoA thioesterase 76.3 7.7 0.00017 35.6 6.1 58 90-149 87-151 (422)
25 PLN02484 probable pectinestera 76.0 9.1 0.0002 36.3 6.7 52 98-150 284-340 (587)
26 PLN02634 probable pectinestera 75.2 10 0.00023 34.0 6.6 45 97-143 67-114 (359)
27 PLN02933 Probable pectinestera 75.2 9.5 0.00021 35.9 6.6 50 98-149 230-284 (530)
28 PLN02916 pectinesterase family 74.9 9.1 0.0002 35.8 6.4 51 98-149 199-256 (502)
29 PLN02665 pectinesterase family 74.9 9.8 0.00021 34.2 6.4 49 98-148 80-133 (366)
30 PLN02201 probable pectinestera 74.8 9.6 0.00021 35.7 6.5 51 97-149 217-272 (520)
31 PLN02488 probable pectinestera 72.5 12 0.00026 35.2 6.5 51 97-149 208-263 (509)
32 PLN02990 Probable pectinestera 70.8 12 0.00027 35.3 6.3 50 98-149 271-325 (572)
33 PF01095 Pectinesterase: Pecti 70.7 8.7 0.00019 33.1 4.9 43 99-143 13-58 (298)
34 PLN02416 probable pectinestera 68.2 14 0.00031 34.7 6.1 44 98-143 242-288 (541)
35 PLN02745 Putative pectinestera 67.5 16 0.00034 34.9 6.2 51 97-149 296-351 (596)
36 PLN02197 pectinesterase 66.5 16 0.00034 34.8 6.0 50 98-149 287-341 (588)
37 PLN02314 pectinesterase 65.6 18 0.0004 34.2 6.3 50 98-149 290-344 (586)
38 PLN02301 pectinesterase/pectin 65.5 20 0.00043 33.8 6.5 51 97-149 247-302 (548)
39 PLN03043 Probable pectinestera 65.3 19 0.0004 33.9 6.2 51 98-149 235-292 (538)
40 PLN02468 putative pectinestera 64.5 21 0.00045 33.8 6.4 44 98-143 270-316 (565)
41 PLN02506 putative pectinestera 63.6 16 0.00035 34.3 5.5 50 98-149 244-298 (537)
42 PLN02995 Probable pectinestera 62.9 22 0.00047 33.5 6.2 52 97-149 234-291 (539)
43 PLN02497 probable pectinestera 60.0 29 0.00064 30.7 6.2 44 98-143 44-90 (331)
44 PRK10123 wcaM putative colanic 58.1 20 0.00044 32.4 4.9 50 78-140 31-83 (464)
45 PLN02313 Pectinesterase/pectin 57.6 29 0.00063 33.0 6.1 51 97-149 286-341 (587)
46 cd07986 LPLAT_ACT14924-like Ly 52.1 20 0.00044 28.4 3.6 28 96-127 83-110 (210)
47 PHA00672 hypothetical protein 49.1 37 0.0008 27.0 4.5 30 117-146 50-86 (152)
48 PLN02217 probable pectinestera 43.1 71 0.0015 31.1 6.3 50 98-149 262-316 (670)
49 PF11429 Colicin_D: Colicin D; 42.3 59 0.0013 24.0 4.5 54 84-143 9-68 (92)
50 PRK15018 1-acyl-sn-glycerol-3- 38.1 42 0.00092 27.8 3.6 28 97-127 124-151 (245)
51 COG4677 PemB Pectin methyleste 37.0 1.3E+02 0.0029 27.4 6.7 47 96-143 92-141 (405)
52 PRK09979 putative rho operon l 34.7 16 0.00036 22.0 0.5 17 8-24 1-17 (33)
53 PRK01203 prefoldin subunit alp 33.1 1.3E+02 0.0029 23.3 5.4 45 101-145 33-79 (130)
54 TIGR01980 sufB FeS assembly pr 30.6 90 0.0019 28.4 4.7 34 114-147 173-217 (448)
55 cd07990 LPLAT_LCLAT1-like Lyso 30.4 64 0.0014 25.0 3.3 32 96-128 86-117 (193)
56 PLN02901 1-acyl-sn-glycerol-3- 29.7 75 0.0016 25.3 3.6 25 97-125 108-132 (214)
57 PF01553 Acyltransferase: Acyl 27.4 76 0.0017 22.1 3.0 29 95-127 75-103 (132)
58 smart00563 PlsC Phosphate acyl 26.5 99 0.0022 20.7 3.4 28 96-127 60-87 (118)
59 cd07988 LPLAT_ABO13168-like Ly 25.9 65 0.0014 24.7 2.6 25 99-125 81-105 (163)
60 cd07992 LPLAT_AAK14816-like Ly 25.5 94 0.002 24.3 3.5 27 96-126 95-121 (203)
61 cd07983 LPLAT_DUF374-like Lyso 24.9 1E+02 0.0023 23.5 3.6 26 96-125 82-107 (189)
62 PRK13301 putative L-aspartate 24.0 73 0.0016 27.6 2.8 35 81-124 88-122 (267)
63 COG1730 GIM5 Predicted prefold 22.8 1.7E+02 0.0037 23.1 4.4 45 101-145 39-86 (145)
64 PF01696 Adeno_E1B_55K: Adenov 22.2 2.1E+02 0.0046 26.1 5.4 54 81-149 43-98 (386)
65 PF13132 DUF3950: Domain of un 22.1 40 0.00087 20.3 0.6 14 4-18 5-18 (30)
66 TIGR01981 sufD FeS assembly pr 22.0 1.5E+02 0.0033 25.9 4.4 41 104-147 85-137 (366)
67 COG0204 PlsC 1-acyl-sn-glycero 21.6 1.1E+02 0.0025 23.7 3.2 27 99-128 125-151 (255)
68 KOG2884 26S proteasome regulat 21.5 1.7E+02 0.0037 25.3 4.4 46 75-125 132-177 (259)
69 cd07478 Peptidases_S8_CspA-lik 20.2 1.6E+02 0.0034 26.8 4.2 42 79-125 151-192 (455)
No 1
>PLN02155 polygalacturonase
Probab=99.70 E-value=3.3e-17 Score=144.60 Aligned_cols=68 Identities=26% Similarity=0.409 Sum_probs=60.8
Q ss_pred CCeeEEeeecCccCCCcchhHHHHHHHHH-HhHcCCCCCCcEEEecCCeEEEeeeEE----CCCeEEEEcCCcEEEcC
Q 044614 78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVR-YMQGFGDKGGAQLNVPEGLWLTGSFNL----TSNFTLFLERGAVMLGS 150 (151)
Q Consensus 78 ~~~~~nV~dFGA~gDG~tDdT~AfQ~AId-aa~~~~~~GGg~V~VPaGtYltg~L~L----kSnvtL~l~~GAvIlgS 150 (151)
....+||+||||+|||++|||+|||+||+ +|.+ .||++|+||+|+|++++|.| ||+++|+|+ | +|+++
T Consensus 24 ~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~---~gGg~v~vP~G~yl~g~i~l~gpcksnv~l~l~-G-~l~~~ 96 (394)
T PLN02155 24 ASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGS---ASSATVVVPTGTFLLKVITFGGPCKSKITFQVA-G-TVVAP 96 (394)
T ss_pred CCcEEEhhhcCcCCCCccccHHHHHHHHHHHccc---CCCeEEEECCCcEEEEEEEEcccCCCCceEEEe-e-EEECc
Confidence 34689999999999999999999999996 7766 78999999999999999999 899999998 7 45443
No 2
>PLN02793 Probable polygalacturonase
Probab=99.67 E-value=1.8e-16 Score=141.68 Aligned_cols=68 Identities=26% Similarity=0.552 Sum_probs=61.6
Q ss_pred CeeEEeeecCccCCCcchhHHHHHHHHH-HhHcCCCCCCcEEEecCC-eEEEeeeEE----CCCeEEEEcCCcEEEcCC
Q 044614 79 KVAMSIKDFGGVGDGTTSNTEAFRKAVR-YMQGFGDKGGAQLNVPEG-LWLTGSFNL----TSNFTLFLERGAVMLGSQ 151 (151)
Q Consensus 79 ~~~~nV~dFGA~gDG~tDdT~AfQ~AId-aa~~~~~~GGg~V~VPaG-tYltg~L~L----kSnvtL~l~~GAvIlgS~ 151 (151)
+.++||+||||+|||.+|||+|||+||+ +|.+ .||++|+||+| +|++++|+| +|+++|+++ ++|+++.
T Consensus 50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~---~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~~~ 123 (443)
T PLN02793 50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSS---KVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPK 123 (443)
T ss_pred ceEEEhhhcccCCCCCCccHHHHHHHHHHHhcc---CCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEccC
Confidence 4799999999999999999999999999 5765 68999999999 599999999 899999998 6887763
No 3
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=1.3e-16 Score=145.91 Aligned_cols=72 Identities=40% Similarity=0.635 Sum_probs=68.1
Q ss_pred CCCCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEECCCeEEEEcCCcEEEcC
Q 044614 76 PERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGS 150 (151)
Q Consensus 76 ~~~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~LkSnvtL~l~~GAvIlgS 150 (151)
......++|.+|||++||.+||+.|||+||++|.+ .+|++|+||+|+|++++|+|||+++|++++||||+++
T Consensus 77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca~---a~Gg~V~lPaGtylsg~l~LKS~~~L~l~egatl~~~ 148 (542)
T COG5434 77 AATDTAFSVSDDGAVGDGATDNTAAIQAAIDACAS---AGGGTVLLPAGTYLSGPLFLKSNVTLHLAEGATLLAS 148 (542)
T ss_pred ccccceeeeccccccccCCccCHHHHHHHHHhhhh---hcCceEEECCceeEeeeEEEecccEEEecCCceeeCC
Confidence 44567899999999999999999999999999987 7999999999999999999999999999999999987
No 4
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.65 E-value=1.7e-16 Score=122.74 Aligned_cols=61 Identities=31% Similarity=0.512 Sum_probs=50.5
Q ss_pred eEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEee-eEECCCeEEEEcCC
Q 044614 81 AMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGS-FNLTSNFTLFLERG 144 (151)
Q Consensus 81 ~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~-L~LkSnvtL~l~~G 144 (151)
++||+||||++||++|||.|||+||+++.. .++++||||+|+|++.. +.++++++|+.+.+
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~---~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~ 62 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAA---AGGGVVYFPPGTYRISGTLIIPSNVTLRGAGG 62 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHCS---TTSEEEEE-SEEEEESS-EEE-TTEEEEESST
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhccc---CCCeEEEEcCcEEEEeCCeEcCCCeEEEccCC
Confidence 489999999999999999999999976665 68999999999999655 99999999999876
No 5
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.65 E-value=3.5e-16 Score=138.42 Aligned_cols=65 Identities=22% Similarity=0.473 Sum_probs=56.2
Q ss_pred CCCeeEEeeecCccCCCcchhHHHHHHHHH-HhHcCCCCCCcEEEecCCeEEEeeeEEC------CCeEEEEcCCcEEEc
Q 044614 77 ERKVAMSIKDFGGVGDGTTSNTEAFRKAVR-YMQGFGDKGGAQLNVPEGLWLTGSFNLT------SNFTLFLERGAVMLG 149 (151)
Q Consensus 77 ~~~~~~nV~dFGA~gDG~tDdT~AfQ~AId-aa~~~~~~GGg~V~VPaGtYltg~L~Lk------SnvtL~l~~GAvIlg 149 (151)
.+..++||+||||+|||.+|||+|||+||+ +|.+ .||++|+||+|+|++++++|+ ++++| +|++
T Consensus 32 ~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~---~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l------~L~~ 102 (404)
T PLN02188 32 SSTFLFDVRSFGARANGHTDDSKAFMAAWKAACAS---TGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF------TLKA 102 (404)
T ss_pred CCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhcc---CCCeEEEECCCeEEEEeEEeCCCcCcceeEEE------EEEc
Confidence 355799999999999999999999999997 5665 688999999999999999996 56666 6666
Q ss_pred C
Q 044614 150 S 150 (151)
Q Consensus 150 S 150 (151)
+
T Consensus 103 s 103 (404)
T PLN02188 103 A 103 (404)
T ss_pred C
Confidence 5
No 6
>PLN02218 polygalacturonase ADPG
Probab=99.63 E-value=8e-16 Score=137.18 Aligned_cols=69 Identities=36% Similarity=0.508 Sum_probs=61.1
Q ss_pred CCeeEEeeecCccCCCcchhHHHHHHHHH-HhHcCCCCCCcEEEecCC-eEEEeeeEEC----CCeEEEEcCCcEEEcCC
Q 044614 78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVR-YMQGFGDKGGAQLNVPEG-LWLTGSFNLT----SNFTLFLERGAVMLGSQ 151 (151)
Q Consensus 78 ~~~~~nV~dFGA~gDG~tDdT~AfQ~AId-aa~~~~~~GGg~V~VPaG-tYltg~L~Lk----SnvtL~l~~GAvIlgS~ 151 (151)
++.++||+||||+|||++|||+|||+||+ +|.+ .|+++|+||+| +|+++++.|+ ++++|++ +++|++|+
T Consensus 64 ~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~---~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l--~g~L~~s~ 138 (431)
T PLN02218 64 TPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSS---NGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQI--FGTLSASQ 138 (431)
T ss_pred CCcEEEeeecccCCCCCcccHHHHHHHHHHhhhc---CCCcEEEECCCCeEEEeeeEecCccCCceEEEE--EEEEEeCC
Confidence 46799999999999999999999999995 6766 68889999999 6999999994 7888887 58999874
No 7
>PLN03010 polygalacturonase
Probab=99.60 E-value=2.5e-15 Score=133.44 Aligned_cols=68 Identities=22% Similarity=0.420 Sum_probs=58.4
Q ss_pred CCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCC--CcEEEecCC-eEEEeeeEECC-----CeEEEEcCCcEEEc
Q 044614 78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKG--GAQLNVPEG-LWLTGSFNLTS-----NFTLFLERGAVMLG 149 (151)
Q Consensus 78 ~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~G--Gg~V~VPaG-tYltg~L~LkS-----nvtL~l~~GAvIlg 149 (151)
...++||+||||+|||++|||+|||+||++++. .+ +++|+||+| +|++++|.|++ +++|+++ ++|++
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~---~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~--G~l~~ 117 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCG---GEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLD--GIIVA 117 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHcc---CCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEc--cEEEc
Confidence 346899999999999999999999999987554 23 379999999 79999999984 7999998 46777
Q ss_pred C
Q 044614 150 S 150 (151)
Q Consensus 150 S 150 (151)
+
T Consensus 118 ~ 118 (409)
T PLN03010 118 P 118 (409)
T ss_pred c
Confidence 6
No 8
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.42 E-value=3.2e-13 Score=121.69 Aligned_cols=55 Identities=33% Similarity=0.615 Sum_probs=49.5
Q ss_pred CCeeEEeeecCccCCCcchhHHHHHHHHHH-hHcCCCCCCcEEEecCC-eEEEeeeEECC
Q 044614 78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRY-MQGFGDKGGAQLNVPEG-LWLTGSFNLTS 135 (151)
Q Consensus 78 ~~~~~nV~dFGA~gDG~tDdT~AfQ~AIda-a~~~~~~GGg~V~VPaG-tYltg~L~LkS 135 (151)
.+.++||+||||+|||++|||+|||+||++ |.+ .||++|+||+| +|+++++.|++
T Consensus 20 ~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~---~ggg~v~VP~G~~yl~~pl~l~g 76 (456)
T PLN03003 20 SSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSG---TGDGQFVVPAGMTFMLQPLKFQG 76 (456)
T ss_pred eeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhc---cCCCEEEECCCceEEeeeeEeCC
Confidence 456899999999999999999999999998 554 68999999999 58899999965
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.40 E-value=4.6e-13 Score=120.58 Aligned_cols=67 Identities=22% Similarity=0.355 Sum_probs=61.2
Q ss_pred CCCCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEECCCeEEEEcCCcE
Q 044614 76 PERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAV 146 (151)
Q Consensus 76 ~~~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~LkSnvtL~l~~GAv 146 (151)
.++...+|+.+|||++||.+|+|+|||+||++|.+ ++.+|.+|+|+|++|+|.|+++++|..++||+
T Consensus 32 ~~p~r~~dv~~fGa~~dG~td~T~ALQaAIdaAa~----gG~tV~Lp~G~Y~~G~L~L~spltL~G~~gAt 98 (455)
T TIGR03808 32 LTSTLGRDATQYGVRPNSPDDQTRALQRAIDEAAR----AQTPLALPPGVYRTGPLRLPSGAQLIGVRGAT 98 (455)
T ss_pred CCCccCCCHHHcCcCCCCcchHHHHHHHHHHHhhc----CCCEEEECCCceecccEEECCCcEEEecCCcE
Confidence 34455699999999999999999999999999875 56899999999999999999999999999996
No 10
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=95.52 E-value=0.018 Score=40.18 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=21.8
Q ss_pred ccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCC-eEEEeeeE
Q 044614 89 GVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEG-LWLTGSFN 132 (151)
Q Consensus 89 A~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaG-tYltg~L~ 132 (151)
|+|||+||||.||.+++++.. .+.++=-.| ||.+.++-
T Consensus 1 A~GDGvtdDt~A~~a~l~a~~------~g~~IDg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEASP------VGRKIDGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS-------TTS-EE-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhccC------CCeEEecCCceEEEeeCc
Confidence 689999999999999998643 333444455 78766543
No 11
>PLN02480 Probable pectinesterase
Probab=92.82 E-value=0.87 Score=40.36 Aligned_cols=51 Identities=4% Similarity=0.018 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEc
Q 044614 97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLG 149 (151)
Q Consensus 97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlg 149 (151)
|=.-+|+||+++... .....+|+|.+|+|. +.+.+ +.+++|..+. +++|.+
T Consensus 59 ~f~TIQ~AIdaap~~-~~~~~~I~Ik~GvY~-E~V~I~~~kp~ItL~G~g~~~TvI~~ 114 (343)
T PLN02480 59 DFTSVQSAIDAVPVG-NSEWIIVHLRKGVYR-EKVHIPENKPFIFMRGNGKGRTSIVW 114 (343)
T ss_pred CcccHHHHHhhCccC-CCceEEEEEcCcEEE-EEEEECCCCceEEEEecCCCCeEEEc
Confidence 456699999998751 112346889999999 77777 5678998775 566654
No 12
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=89.10 E-value=0.69 Score=39.31 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=32.9
Q ss_pred HHHHHHHHHhHcCCCCCCcEEEecCCeEE--E---eeeEECCCeEEEEcC
Q 044614 99 EAFRKAVRYMQGFGDKGGAQLNVPEGLWL--T---GSFNLTSNFTLFLER 143 (151)
Q Consensus 99 ~AfQ~AIdaa~~~~~~GGg~V~VPaGtYl--t---g~L~LkSnvtL~l~~ 143 (151)
+-|++|++.+.. |.+|+|-+|+|. + -||.++++++|+.++
T Consensus 16 ~Ti~~A~~~a~~-----g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~ 60 (246)
T PF07602_consen 16 KTITKALQAAQP-----GDTIQLAPGTYSEATGETFPIIIKPGVTLIGNE 60 (246)
T ss_pred HHHHHHHHhCCC-----CCEEEECCceeccccCCcccEEecCCeEEeecc
Confidence 458899988765 789999999997 3 378899999998763
No 13
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=88.42 E-value=0.68 Score=43.79 Aligned_cols=35 Identities=31% Similarity=0.496 Sum_probs=27.0
Q ss_pred CcEEEecCCeEEEee---eEECCCe-EEEEcCCcEEEcC
Q 044614 116 GAQLNVPEGLWLTGS---FNLTSNF-TLFLERGAVMLGS 150 (151)
Q Consensus 116 Gg~V~VPaGtYltg~---L~LkSnv-tL~l~~GAvIlgS 150 (151)
..+|||++|+|-.|. +.|++|+ ++++++||.+.|+
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~sn~~~VYlApGAyVkGA 270 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLPSNTKWVYLAPGAYVKGA 270 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-TT--EEEE-TTEEEES-
T ss_pred cceEEeCCceEEeCCCccEEECCCccEEEEcCCcEEEEE
Confidence 569999999998776 9999986 9999999999875
No 14
>PLN02304 probable pectinesterase
Probab=84.37 E-value=3.1 Score=37.55 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEE
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVML 148 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIl 148 (151)
=.-+|+||+++... ....-+|+|-+|+|. ..+.+ +++++|..+. ..+|.
T Consensus 87 f~TIQ~AIdavP~~-~~~r~vI~Ik~GvY~-EkV~Ip~~K~~Itl~G~g~~~TiIt 140 (379)
T PLN02304 87 FTTVQSAVDAVGNF-SQKRNVIWINSGIYY-EKVTVPKTKPNITFQGQGFDSTAIA 140 (379)
T ss_pred ccCHHHHHhhCccc-CCCcEEEEEeCeEeE-EEEEECCCCCcEEEEecCCCCcEEE
Confidence 44599999998651 123568999999997 44555 6789998874 34444
No 15
>PLN02432 putative pectinesterase
Probab=82.03 E-value=4.6 Score=35.13 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEE
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVML 148 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIl 148 (151)
=.-+|+||+++... ....-+|+|.+|+|. ..+.+ +.+++|..+. +.+|.
T Consensus 23 f~TIq~Aida~p~~-~~~~~~I~I~~G~Y~-E~V~ip~~k~~itl~G~~~~~TvI~ 76 (293)
T PLN02432 23 FRKIQDAIDAVPSN-NSQLVFIWVKPGIYR-EKVVVPADKPFITLSGTQASNTIIT 76 (293)
T ss_pred ccCHHHHHhhcccc-CCceEEEEEeCceeE-EEEEEeccCceEEEEEcCCCCeEEE
Confidence 45699999998761 123468999999995 44555 6788988873 44443
No 16
>PLN02176 putative pectinesterase
Probab=81.53 E-value=5 Score=35.66 Aligned_cols=44 Identities=5% Similarity=0.097 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER 143 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~ 143 (151)
=.-+|+||+++... ....-+|+|.+|+|. ..+.+ +.+++|..+.
T Consensus 51 f~TIq~AIdavP~~-~~~~~~I~Ik~GvY~-EkV~Ip~~k~~vtl~G~g 97 (340)
T PLN02176 51 FKTVQSAIDSIPLQ-NQNWIRILIQNGIYR-EKVTIPKEKGYIYMQGKG 97 (340)
T ss_pred ccCHHHHHhhchhc-CCceEEEEECCcEEE-EEEEECCCCccEEEEEcC
Confidence 55699999998661 122457999999998 34555 5689998873
No 17
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=80.33 E-value=4.2 Score=37.32 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE-CCC-----eEEEEcC
Q 044614 97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL-TSN-----FTLFLER 143 (151)
Q Consensus 97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L-kSn-----vtL~l~~ 143 (151)
+.++||+|++.+.. |-+|++..|+|....|.+ .++ |||.-+.
T Consensus 3 s~~~lq~Ai~~a~p-----GD~I~L~~Gty~~~~i~~~~~GT~~~PItl~Ae~ 50 (425)
T PF14592_consen 3 SVAELQSAIDNAKP-----GDTIVLADGTYKDVEIVFKGSGTAAKPITLRAEN 50 (425)
T ss_dssp SHHHHHHHHHH--T-----T-EEEE-SEEEET-EEEE-S--BTTB-EEEEESS
T ss_pred CHHHHHHHHHhCCC-----CCEEEECCceeecceEEEEecccCCCCEEEEecC
Confidence 56889999998876 889999999999545666 233 7777763
No 18
>PLN02671 pectinesterase
Probab=79.59 E-value=6.2 Score=35.37 Aligned_cols=43 Identities=7% Similarity=0.203 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEc
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLE 142 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~ 142 (151)
=.-+|+|||++... ....-+|+|-+|+|. ..+.+ +.+++|..+
T Consensus 71 f~TIQ~AIdavP~~-~~~~~~I~Ik~GvY~-EkV~I~~~k~~Itl~G~ 116 (359)
T PLN02671 71 SLTVQGAVDMVPDY-NSQRVKIYILPGIYR-EKVLVPKSKPYISFIGN 116 (359)
T ss_pred ccCHHHHHHhchhc-CCccEEEEEeCceEE-EEEEECCCCCeEEEEec
Confidence 45699999998761 123568999999998 34555 678999886
No 19
>PLN02773 pectinesterase
Probab=79.32 E-value=6.6 Score=34.53 Aligned_cols=44 Identities=11% Similarity=0.080 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER 143 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~ 143 (151)
=.-+|+||+++... ....-+|+|.+|+|. ..+.+ +.+++|..+.
T Consensus 17 f~TIq~Aida~P~~-~~~~~~I~Ik~G~Y~-E~V~I~~~k~~itl~G~~ 63 (317)
T PLN02773 17 YCTVQDAIDAVPLC-NRCRTVIRVAPGVYR-QPVYVPKTKNLITLAGLS 63 (317)
T ss_pred ccCHHHHHhhchhc-CCceEEEEEeCceEE-EEEEECcCCccEEEEeCC
Confidence 44599999998761 123458999999998 55666 4578888863
No 20
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=79.16 E-value=6.4 Score=37.13 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhHcCC--CCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEcC
Q 044614 98 TEAFRKAVRYMQGFG--DKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLGS 150 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~--~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlgS 150 (151)
=.-+|+||+++.... ..+.-+|+|.+|+|. ..+.+ +.+++|..+. ..+|.++
T Consensus 262 f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~-E~V~i~~~k~~i~l~G~g~~~TiIt~~ 320 (566)
T PLN02713 262 FTTINDAVAAAPNNTDGSNGYFVIYVTAGVYE-EYVSIPKNKKYLMMIGDGINQTVITGN 320 (566)
T ss_pred CCCHHHHHHhhhcccCCCCceEEEEEcCcEEE-EEEEecCCCceEEEEecCCCCcEEEcC
Confidence 445999999986621 123458999999997 44555 5688998864 3455443
No 21
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=78.63 E-value=6.8 Score=36.86 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEc
Q 044614 97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLG 149 (151)
Q Consensus 97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlg 149 (151)
|-.-+|+||+++........-+|+|.+|+|. ..+.+ +.+++|..+. ..+|.+
T Consensus 236 ~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~k~nItl~G~g~~~TiIt~ 292 (529)
T PLN02170 236 THKTIGEALLSTSLESGGGRTVIYLKAGTYH-ENLNIPTKQKNVMLVGDGKGKTVIVG 292 (529)
T ss_pred chhhHHHHHHhcccccCCceEEEEEeCCeeE-EEEecCCCCceEEEEEcCCCCeEEEe
Confidence 4567999999754211134578999999997 44555 6789998873 344544
No 22
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=78.48 E-value=6.7 Score=36.90 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER 143 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~ 143 (151)
=.-+|+||+++......+.-+|+|.+|+|. ..+.+ +.|++|..+.
T Consensus 253 f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~-E~V~i~~~k~~v~l~G~g 300 (553)
T PLN02708 253 YKTVQEAVNAAPDNNGDRKFVIRIKEGVYE-ETVRVPLEKKNVVFLGDG 300 (553)
T ss_pred ccCHHHHHHhhhhccCCccEEEEEeCceEE-eeeeecCCCccEEEEecC
Confidence 455999999986521134569999999998 34454 5688888773
No 23
>PLN02682 pectinesterase family protein
Probab=78.16 E-value=13 Score=33.51 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER 143 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~ 143 (151)
=.-+|+|||++... ....-+|+|-+|+|. ..+.+ +++++|..+.
T Consensus 82 f~TIQ~AIdavP~~-~~~r~vI~Ik~G~Y~-EkV~Ip~~k~~Itl~G~g 128 (369)
T PLN02682 82 FTTIQAAIDSLPVI-NLVRVVIKVNAGTYR-EKVNIPPLKAYITLEGAG 128 (369)
T ss_pred ccCHHHHHhhcccc-CCceEEEEEeCceee-EEEEEeccCceEEEEecC
Confidence 44599999998651 123468999999997 34455 6789998874
No 24
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=76.32 E-value=7.7 Score=35.57 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=37.2
Q ss_pred cCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC----CcEEEc
Q 044614 90 VGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER----GAVMLG 149 (151)
Q Consensus 90 ~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~----GAvIlg 149 (151)
.+||.- |=.-+|+|||++.........+|+|-+|+|. ..+.+ +.+|+|+.+. +.+|.+
T Consensus 87 a~dGsG-df~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~-EkV~Ip~~kp~ItL~G~G~~~~~TvIt~ 151 (422)
T PRK10531 87 AGTQGV-THTTVQAAVDAAIAKRTNKRQYIAVMPGTYQ-GTVYVPAAAPPITLYGTGEKPIDVKIGL 151 (422)
T ss_pred CCCCCC-CccCHHHHHhhccccCCCceEEEEEeCceeE-EEEEeCCCCceEEEEecCCCCCceEEEe
Confidence 355532 3456999999764311123468999999998 34556 6789998742 456654
No 25
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=75.98 E-value=9.1 Score=36.30 Aligned_cols=52 Identities=12% Similarity=0.240 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEcC
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLGS 150 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlgS 150 (151)
=.-||+||+++... ..+.-+|+|-+|+|.-..+.+ +.|++|..+. ..+|.++
T Consensus 284 f~TIq~Ai~a~P~~-~~~r~vI~Ik~G~Y~E~~v~i~~~k~ni~l~G~g~~~TiIt~~ 340 (587)
T PLN02484 284 FKTISEAIKKAPEH-SSRRTIIYVKAGRYEENNLKVGRKKTNLMFIGDGKGKTVITGG 340 (587)
T ss_pred cccHHHHHHhcccc-CCCcEEEEEeCCEEEEEEEEECCCCceEEEEecCCCCeEEecC
Confidence 45599999998761 124568999999998655666 5689998873 3455443
No 26
>PLN02634 probable pectinesterase
Probab=75.23 E-value=10 Score=33.97 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC
Q 044614 97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER 143 (151)
Q Consensus 97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~ 143 (151)
|=.-+|+|||++... .....+|+|-+|+|. ..+.+ +.+++|..+.
T Consensus 67 df~TIQaAIda~P~~-~~~r~vI~Ik~GvY~-EkV~Ip~~k~~ItL~G~g 114 (359)
T PLN02634 67 DFRSVQDAVDSVPKN-NTMSVTIKINAGFYR-EKVVVPATKPYITFQGAG 114 (359)
T ss_pred CccCHHHHHhhCccc-CCccEEEEEeCceEE-EEEEEcCCCCeEEEEecC
Confidence 345699999998651 123568999999997 33445 6788888874
No 27
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=75.21 E-value=9.5 Score=35.88 Aligned_cols=50 Identities=10% Similarity=0.124 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEc
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLG 149 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlg 149 (151)
=.-+|+||+++... ....-+|+|-+|+|. ..+.+ +.+++|..+. ..+|.+
T Consensus 230 f~TIq~Ai~a~P~~-~~~r~vI~Ik~GvY~-E~V~I~~~k~~itl~G~g~~~TiIt~ 284 (530)
T PLN02933 230 FTTINEAVSAAPNS-SETRFIIYIKGGEYF-ENVELPKKKTMIMFIGDGIGKTVIKA 284 (530)
T ss_pred ccCHHHHHHhchhc-CCCcEEEEEcCceEE-EEEEecCCCceEEEEEcCCCCcEEEe
Confidence 45599999998661 123568999999998 55666 5678888773 344543
No 28
>PLN02916 pectinesterase family protein
Probab=74.94 E-value=9.1 Score=35.78 Aligned_cols=51 Identities=10% Similarity=0.235 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhHcCC--CCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEc
Q 044614 98 TEAFRKAVRYMQGFG--DKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLG 149 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~--~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlg 149 (151)
=.-||+||+++.... ..+.-+|+|.+|+|. ..+.+ +.+++|..+. ..+|.+
T Consensus 199 f~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~k~~i~l~G~g~~~TiIt~ 256 (502)
T PLN02916 199 HRTINQALAALSRMGKSRTNRVIIYVKAGVYN-EKVEIDRHMKNVMFVGDGMDKTIITN 256 (502)
T ss_pred ccCHHHHHHhcccccCCCCceEEEEEeCceee-EEEEecCCCceEEEEecCCCCcEEEe
Confidence 456999999886411 123468999999998 34555 4678888763 344443
No 29
>PLN02665 pectinesterase family protein
Probab=74.92 E-value=9.8 Score=34.15 Aligned_cols=49 Identities=8% Similarity=0.139 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEE
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVML 148 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIl 148 (151)
-..+|+||+++... ....-+|+|.+|+|. ..+.+ +.+++|..+. ..+|.
T Consensus 80 f~TIq~AIdaiP~~-~~~r~vI~Ik~GvY~-EkV~Ip~~kp~Itl~G~~~~~tiIt 133 (366)
T PLN02665 80 FKTITDAIKSIPAG-NTQRVIIDIGPGEYN-EKITIDRSKPFVTLYGSPGAMPTLT 133 (366)
T ss_pred ccCHHHHHhhCccc-CCceEEEEEeCcEEE-EEEEecCCCCEEEEEecCCCCCEEE
Confidence 55699999998651 123457899999998 44555 5789998873 34454
No 30
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=74.83 E-value=9.6 Score=35.73 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEc
Q 044614 97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLG 149 (151)
Q Consensus 97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlg 149 (151)
|=.-+|+||+++... ....-+|+|.+|+|. ..+.+ +.+++|..+. ..+|.+
T Consensus 217 ~f~TIq~Ai~a~P~~-~~~r~vI~Ik~GvY~-E~V~I~~~k~~i~l~G~g~~~TiIt~ 272 (520)
T PLN02201 217 NFTTIMDAVLAAPDY-STKRYVIYIKKGVYL-ENVEIKKKKWNIMMVGDGIDATVITG 272 (520)
T ss_pred CccCHHHHHHhchhc-CCCcEEEEEeCceeE-EEEEecCCCceEEEEecCCCCcEEEe
Confidence 355699999998651 134568999999997 44555 4578888873 344544
No 31
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=72.49 E-value=12 Score=35.19 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC-C-cEEEc
Q 044614 97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER-G-AVMLG 149 (151)
Q Consensus 97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~-G-AvIlg 149 (151)
|=.-+|+||+++... ..+.-+|+|.+|+|. ..+.+ +.|++|..+. + .+|.+
T Consensus 208 ~f~TIq~AI~a~P~~-~~~r~vI~Ik~GvY~-E~V~I~~~k~nItliGdg~~~TiIt~ 263 (509)
T PLN02488 208 KYNTVNAAIAAAPEH-SRKRFVIYIKTGVYD-EIVRIGSTKPNLTLIGDGQDSTIITG 263 (509)
T ss_pred CccCHHHHHHhchhc-CCCcEEEEEeCCeeE-EEEEecCCCccEEEEecCCCceEEEE
Confidence 344599999998751 134568999999998 34555 5789998774 3 44444
No 32
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=70.84 E-value=12 Score=35.35 Aligned_cols=50 Identities=8% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEc
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLG 149 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlg 149 (151)
-.-+|+||+++... ..+.-+|+|.+|+|.- .+.+ +.|++|..+. ..+|.+
T Consensus 271 f~TIq~Av~a~p~~-~~~r~vI~Ik~GvY~E-~V~i~~~k~~i~l~G~g~~~TiIt~ 325 (572)
T PLN02990 271 YKTINEALNAVPKA-NQKPFVIYIKQGVYNE-KVDVTKKMTHVTFIGDGPTKTKITG 325 (572)
T ss_pred CcCHHHHHhhCccc-CCceEEEEEeCceeEE-EEEecCCCCcEEEEecCCCceEEEe
Confidence 45599999998651 1235689999999983 4555 5688998873 345543
No 33
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=70.69 E-value=8.7 Score=33.14 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=27.8
Q ss_pred HHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC
Q 044614 99 EAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER 143 (151)
Q Consensus 99 ~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~ 143 (151)
.-||+|||++... ....-+|+|.+|+|. ..+.+ +.+++|..+.
T Consensus 13 ~TIq~Aida~p~~-~~~~~~I~I~~G~Y~-E~V~i~~~k~~v~l~G~~ 58 (298)
T PF01095_consen 13 TTIQAAIDAAPDN-NTSRYTIFIKPGTYR-EKVTIPRSKPNVTLIGEG 58 (298)
T ss_dssp SSHHHHHHHS-SS-SSS-EEEEE-SEEEE---EEE-STSTTEEEEES-
T ss_pred cCHHHHHHhchhc-CCceEEEEEeCeeEc-cccEeccccceEEEEecC
Confidence 4499999998761 123468999999998 33555 3688988773
No 34
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=68.16 E-value=14 Score=34.65 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER 143 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~ 143 (151)
=.-+|+||+++... ....-+|+|.+|+|. ..+.+ +.|++|..+.
T Consensus 242 f~TIq~Ai~a~p~~-~~~r~vI~Ik~GvY~-E~V~i~~~k~~i~l~G~g 288 (541)
T PLN02416 242 FSTITDAINFAPNN-SNDRIIIYVREGVYE-ENVEIPIYKTNIVLIGDG 288 (541)
T ss_pred ccCHHHHHHhhhhc-CCceEEEEEeCceeE-EEEecCCCCccEEEEecC
Confidence 45599999998661 123457999999997 34555 5789988764
No 35
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=67.51 E-value=16 Score=34.86 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEc
Q 044614 97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLG 149 (151)
Q Consensus 97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlg 149 (151)
|=.-+|+||+++... ..+.-+|+|.+|+|.- .+.+ +.+++|..+. ..+|.+
T Consensus 296 ~f~TIq~Ai~a~P~~-~~~r~vI~Ik~GvY~E-~V~I~~~k~~i~l~G~g~~~TiIt~ 351 (596)
T PLN02745 296 NFTTISDALAAMPAK-YEGRYVIYVKQGIYDE-TVTVDKKMVNVTMYGDGSQKTIVTG 351 (596)
T ss_pred CcccHHHHHHhcccc-CCceEEEEEeCCeeEE-EEEEcCCCceEEEEecCCCceEEEE
Confidence 345699999988651 1235689999999983 3555 4588888773 344444
No 36
>PLN02197 pectinesterase
Probab=66.52 E-value=16 Score=34.83 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEc
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLG 149 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlg 149 (151)
=.-+|+||+++... ..+.-+|+|-+|+|. ..+.+ +.|++|..+. ..+|.+
T Consensus 287 f~TIq~Ai~a~P~~-~~~r~vI~Ik~GvY~-E~V~I~~~k~ni~l~G~g~~~TiIt~ 341 (588)
T PLN02197 287 FKTISQAVMACPDK-NPGRCIIHIKAGIYN-EQVTIPKKKNNIFMFGDGARKTVISY 341 (588)
T ss_pred cCCHHHHHHhcccc-CCceEEEEEeCceEE-EEEEccCCCceEEEEEcCCCCeEEEe
Confidence 45699999998661 123457999999998 34555 4688888774 345544
No 37
>PLN02314 pectinesterase
Probab=65.62 E-value=18 Score=34.24 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEc
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLG 149 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlg 149 (151)
-.-+|+|++++... ..+.-+|+|-+|+|. ..+.+ +.|++|..+. ..+|.+
T Consensus 290 f~TI~~Av~a~p~~-~~~r~vI~ik~G~Y~-E~V~i~~~k~~i~l~G~g~~~tiIt~ 344 (586)
T PLN02314 290 VKTINEAVASIPKK-SKSRFVIYVKEGTYV-ENVLLDKSKWNVMIYGDGKDKTIISG 344 (586)
T ss_pred ccCHHHHHhhcccc-CCceEEEEEcCceEE-EEEEecCCCceEEEEecCCCCcEEEe
Confidence 44599999998651 123568999999998 34445 5688888774 345544
No 38
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=65.52 E-value=20 Score=33.83 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEc
Q 044614 97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLG 149 (151)
Q Consensus 97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlg 149 (151)
|=..+|+||+++... ..+.-+|+|-+|+|. ..+.+ +.+++|..+. ..+|.+
T Consensus 247 ~f~TIq~Ai~a~P~~-~~~r~vI~Ik~G~Y~-E~V~i~~~k~~i~l~G~g~~~TiIt~ 302 (548)
T PLN02301 247 KYKTVKEAVASAPDN-SKTRYVIYVKKGTYK-ENVEIGKKKKNLMLVGDGMDSTIITG 302 (548)
T ss_pred CcccHHHHHHhhhhc-CCceEEEEEeCceee-EEEEecCCCceEEEEecCCCCcEEEe
Confidence 345699999998761 123468999999997 34555 5688888774 344443
No 39
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=65.31 E-value=19 Score=33.89 Aligned_cols=51 Identities=14% Similarity=0.166 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhHcCCC--CCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEc
Q 044614 98 TEAFRKAVRYMQGFGD--KGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLG 149 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~--~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlg 149 (151)
=.-||+||+++..... .+.-+|||.+|+|. ..+.+ +.|++|..+. ..+|.+
T Consensus 235 f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~-E~V~i~~~k~~i~l~G~g~~~tiIt~ 292 (538)
T PLN03043 235 FTTITDAIAAAPNNSKPEDGYFVIYAREGYYE-EYVVVPKNKKNIMLIGDGINKTIITG 292 (538)
T ss_pred CcCHHHHHHhccccCCCCcceEEEEEcCeeeE-EEEEeCCCCCcEEEEecCCCCeEEEe
Confidence 4569999998866211 12358999999997 34555 5789998874 344443
No 40
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=64.53 E-value=21 Score=33.76 Aligned_cols=44 Identities=9% Similarity=0.189 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER 143 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~ 143 (151)
=.-+|+|++++... ..+.-+|+|.+|+|. ..+.+ +.|++|..+.
T Consensus 270 f~tI~~Av~a~p~~-~~~~~vI~ik~GvY~-E~V~i~~~k~~i~~~G~g 316 (565)
T PLN02468 270 YKTISEALKDVPEK-SEKRTIIYVKKGVYF-ENVRVEKKKWNVVMVGDG 316 (565)
T ss_pred ccCHHHHHHhchhc-CCCcEEEEEeCCceE-EEEEecCCCCeEEEEecC
Confidence 35699999998651 134569999999997 34555 4578887764
No 41
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=63.64 E-value=16 Score=34.33 Aligned_cols=50 Identities=14% Similarity=0.255 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEc
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLG 149 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlg 149 (151)
=.-||+||+++... ..+.-+|+|.+|+|.-. +.+ +.+++|..+. ..+|.+
T Consensus 244 f~TIq~Av~a~p~~-~~~r~vI~Vk~GvY~E~-V~I~~~k~~i~l~G~g~~~tiIt~ 298 (537)
T PLN02506 244 YRTITEAINEAPNH-SNRRYIIYVKKGVYKEN-IDMKKKKTNIMLVGDGIGQTVVTG 298 (537)
T ss_pred ccCHHHHHHhchhc-CCCcEEEEEeCCeeeEE-EeccCCCceEEEEEcCCCCeEEEe
Confidence 44599999998651 13456899999999732 233 5788888763 344443
No 42
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=62.86 E-value=22 Score=33.47 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhHcC-CCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEc
Q 044614 97 NTEAFRKAVRYMQGF-GDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLG 149 (151)
Q Consensus 97 dT~AfQ~AIdaa~~~-~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlg 149 (151)
|=.-+|+||+++... ...+.-+|+|-+|+|.-. +.+ +.|++|..+. ..+|.+
T Consensus 234 ~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~E~-V~i~~~k~~i~l~G~g~~~TvIt~ 291 (539)
T PLN02995 234 HFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQEN-INVRLNNDDIMLVGDGMRSTIITG 291 (539)
T ss_pred CccCHHHHHHhcccccCCCceEEEEEeCCEeEEE-EEecCCCCcEEEEEcCCCCeEEEe
Confidence 345699999998631 013457899999999843 444 5789998874 344544
No 43
>PLN02497 probable pectinesterase
Probab=60.02 E-value=29 Score=30.74 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER 143 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~ 143 (151)
=.-+|+|||++... ....-+|+|-+|+|. ..+.+ +.+++|..+.
T Consensus 44 f~TIq~AIdavP~~-~~~~~~I~Ik~G~Y~-EkV~Ip~~k~~itl~G~g 90 (331)
T PLN02497 44 FTTIQSAIDSVPSN-NKHWFCINVKAGLYR-EKVKIPYDKPFIVLVGAG 90 (331)
T ss_pred ccCHHHHHhhcccc-CCceEEEEEeCcEEE-EEEEecCCCCcEEEEecC
Confidence 45599999998761 122357999999996 33444 6789988763
No 44
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=58.05 E-value=20 Score=32.39 Aligned_cols=50 Identities=22% Similarity=0.399 Sum_probs=29.1
Q ss_pred CCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeE---EEeeeEECCCeEEE
Q 044614 78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLW---LTGSFNLTSNFTLF 140 (151)
Q Consensus 78 ~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtY---ltg~L~LkSnvtL~ 140 (151)
....+||.||-. .|=-.+|.+|+. .+.+|+||+|-- +-..++++.+-||+
T Consensus 31 ~~~~vni~dy~~-----~dwiasfkqaf~--------e~qtvvvpagl~cenint~ifip~gktl~ 83 (464)
T PRK10123 31 ARQSVNINDYNP-----HDWIASFKQAFS--------EGQTVVVPAGLVCDNINTGIFIPPGKTLH 83 (464)
T ss_pred CCceeehhhcCc-----ccHHHHHHHHhc--------cCcEEEecCccEecccccceEeCCCCeEE
Confidence 456899999964 234456888874 355666666621 22344554444443
No 45
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=57.55 E-value=29 Score=32.96 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEc
Q 044614 97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLG 149 (151)
Q Consensus 97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlg 149 (151)
|=.-+|+||+++... ..+.-+|||-+|+|.- .+.+ +.|++|..+. ..+|.+
T Consensus 286 ~f~TI~~Av~a~p~~-~~~r~vI~ik~GvY~E-~V~i~~~k~ni~l~Gdg~~~TiIt~ 341 (587)
T PLN02313 286 DFTTVAAAVAAAPEK-SNKRFVIHIKAGVYRE-NVEVTKKKKNIMFLGDGRGKTIITG 341 (587)
T ss_pred CCccHHHHHHhcccc-CCceEEEEEeCceeEE-EEEeCCCCCeEEEEecCCCccEEEe
Confidence 345699999988651 1335699999999983 3444 4678887764 344444
No 46
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=52.11 E-value=20 Score=28.42 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHhHcCCCCCCcEEEecCCeEE
Q 044614 96 SNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWL 127 (151)
Q Consensus 96 DdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYl 127 (151)
.+.++++++.+.+.+ |+..+++|+|+--
T Consensus 83 ~~~~~~~~~~~~L~~----G~~l~IFPEGtrs 110 (210)
T cd07986 83 KNRESLREALRHLKN----GGALIIFPAGRVS 110 (210)
T ss_pred hhHHHHHHHHHHHhC----CCEEEEECCcccc
Confidence 566788888888875 7788999999853
No 47
>PHA00672 hypothetical protein
Probab=49.12 E-value=37 Score=27.04 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=22.5
Q ss_pred cEEEecCCeEEEeeeE-------ECCCeEEEEcCCcE
Q 044614 117 AQLNVPEGLWLTGSFN-------LTSNFTLFLERGAV 146 (151)
Q Consensus 117 g~V~VPaGtYltg~L~-------LkSnvtL~l~~GAv 146 (151)
..+.||+|+-|+|.+. ++.+++++.+.+++
T Consensus 50 Rei~IPkGt~LtG~~hkf~~~ii~sG~itV~tdge~~ 86 (152)
T PHA00672 50 RTIRIPAGVALTGALIKVSTVLIFSGHATVFIGGEAV 86 (152)
T ss_pred EEEeccCceeeeeeeeEeeEEEEecccEEEEeCCcEE
Confidence 4799999999988643 35568888886654
No 48
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=43.10 E-value=71 Score=31.07 Aligned_cols=50 Identities=8% Similarity=0.242 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEc
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLG 149 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlg 149 (151)
=.-||+||+++... ..+.-+|+|-+|+|.- .+.+ +.|++|..+. ..+|.+
T Consensus 262 f~TIq~Av~a~P~~-~~~r~vI~Ik~GvY~E-~V~I~~~k~~i~l~Gdg~~~TiIt~ 316 (670)
T PLN02217 262 YKTINEALNFVPKK-KNTTFVVHIKAGIYKE-YVQVNRSMTHLVFIGDGPDKTVISG 316 (670)
T ss_pred ccCHHHHHHhcccc-CCceEEEEEeCCceEE-EEEEcCCCCcEEEEecCCCCeEEEc
Confidence 45699999998661 1235689999999974 3455 4578887763 344544
No 49
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=42.29 E-value=59 Score=24.01 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=27.5
Q ss_pred eeecCccC-CCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEE-E-ee-eEE--CCCeEEEEcC
Q 044614 84 IKDFGGVG-DGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWL-T-GS-FNL--TSNFTLFLER 143 (151)
Q Consensus 84 V~dFGA~g-DG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYl-t-g~-L~L--kSnvtL~l~~ 143 (151)
..|||..+ +.....-..|+.||..--. ...+|+ .|||+ . ++ +++ ..+..+.+++
T Consensus 9 a~DFGi~~~~~N~~t~~~F~~aI~~hi~----~~~tv~--~GtYr~~~~skV~~N~~T~~~Vi~d~ 68 (92)
T PF11429_consen 9 AGDFGITGTNWNKETLEEFEDAIKEHIK----NPDTVE--KGTYRRVKDSKVYFNPKTNNVVIIDK 68 (92)
T ss_dssp GGGGT------SHHHHHHHHHHHHHHHH-----TT-EE----BETTSTT-EEEEETTTTEEEEE-T
T ss_pred ccccCcccCCCChhhHHHHHHHHHHHhC----CCCeEe--ccceecCCCcEEEEeCCCCeEEEEcC
Confidence 35899988 5555555779999975332 245644 89998 3 23 333 6677777764
No 50
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=38.14 E-value=42 Score=27.83 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHhHcCCCCCCcEEEecCCeEE
Q 044614 97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWL 127 (151)
Q Consensus 97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYl 127 (151)
+-++++++.+.+.+ .|...+++|+||--
T Consensus 124 ~~~~l~~~~~~l~~---~g~sv~IFPEGTRs 151 (245)
T PRK15018 124 AHGTIAEVVNHFKK---RRISIWMFPEGTRS 151 (245)
T ss_pred HHHHHHHHHHHHHh---CCCEEEEECCccCC
Confidence 34567888888776 44568899999753
No 51
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=36.95 E-value=1.3e+02 Score=27.44 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE-CC--CeEEEEcC
Q 044614 96 SNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL-TS--NFTLFLER 143 (151)
Q Consensus 96 DdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L-kS--nvtL~l~~ 143 (151)
++-.-||+|+|++...+....-.|.|-+|.|. +.+.+ ++ ++||+.+.
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~-e~v~Vp~~~~~ITLyGed 141 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQ-ETVYVPAAPGGITLYGED 141 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceec-eeEEecCCCCceeEEecC
Confidence 44556999999886521122456777899996 33444 23 48887764
No 52
>PRK09979 putative rho operon leader peptide; Provisional
Probab=34.75 E-value=16 Score=21.97 Aligned_cols=17 Identities=35% Similarity=0.512 Sum_probs=14.8
Q ss_pred hhhhhhcCCCCCCcHHH
Q 044614 8 MKSEKLKGNFSRPSWAT 24 (151)
Q Consensus 8 ~~~~~~~~~~~~~~~~~ 24 (151)
|.||.|.|+.-.|+|..
T Consensus 1 mrseqisgsslnpscrf 17 (33)
T PRK09979 1 MRSEQISGSSLNPSCRF 17 (33)
T ss_pred CccccccCCcCCccccc
Confidence 78999999999998864
No 53
>PRK01203 prefoldin subunit alpha; Provisional
Probab=33.13 E-value=1.3e+02 Score=23.32 Aligned_cols=45 Identities=9% Similarity=0.302 Sum_probs=30.7
Q ss_pred HHHHHHHhHcCCCCCCcEEEecC--CeEEEeeeEECCCeEEEEcCCc
Q 044614 101 FRKAVRYMQGFGDKGGAQLNVPE--GLWLTGSFNLTSNFTLFLERGA 145 (151)
Q Consensus 101 fQ~AIdaa~~~~~~GGg~V~VPa--GtYltg~L~LkSnvtL~l~~GA 145 (151)
|+.+++.+.......+..+.||= |.|.-|.+.=++++-+.+..|-
T Consensus 33 ~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy 79 (130)
T PRK01203 33 VQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGV 79 (130)
T ss_pred HHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCe
Confidence 56666666542224578999994 4799888776777777766663
No 54
>TIGR01980 sufB FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=30.62 E-value=90 Score=28.41 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=24.1
Q ss_pred CCCcEEEecCCeEEEeeeEE-----------CCCeEEEEcCCcEE
Q 044614 114 KGGAQLNVPEGLWLTGSFNL-----------TSNFTLFLERGAVM 147 (151)
Q Consensus 114 ~GGg~V~VPaGtYltg~L~L-----------kSnvtL~l~~GAvI 147 (151)
.+|..|+||+|.-+..||.+ ..++-+.+++||.+
T Consensus 173 ~~G~~i~Vp~g~~~~~Pi~~~~~~~~~~~~~~~r~lIi~ee~s~~ 217 (448)
T TIGR01980 173 SGGSFVYVPKGVRVDMPLQTYFRINSENTGQFEHTLIIADEGASV 217 (448)
T ss_pred CceEEEEECCCCEeCCCEEEEEEEcCCccceeeeEEEEECCCCEE
Confidence 67899999999776666554 24556677777654
No 55
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=30.39 E-value=64 Score=25.01 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEE
Q 044614 96 SNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLT 128 (151)
Q Consensus 96 DdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYlt 128 (151)
.|.+++.++++...+. ..+...+++|+||..+
T Consensus 86 ~d~~~i~~~~~~l~~~-~~~~~lviFPEGTr~~ 117 (193)
T cd07990 86 KDEKTIKRQLKRLKDS-PEPFWLLIFPEGTRFT 117 (193)
T ss_pred HhHHHHHHHHHHHhcC-CCCcEEEEeCcccCCC
Confidence 4567888888887761 1256789999998653
No 56
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=29.66 E-value=75 Score=25.34 Aligned_cols=25 Identities=20% Similarity=0.518 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHhHcCCCCCCcEEEecCCe
Q 044614 97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGL 125 (151)
Q Consensus 97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGt 125 (151)
..++++++.+.+.+ |...+++|+|+
T Consensus 108 ~~~~~~~~~~~l~~----g~~v~IfPEGt 132 (214)
T PLN02901 108 QLECLKRCMELLKK----GASVFFFPEGT 132 (214)
T ss_pred HHHHHHHHHHHHhC----CCEEEEeCCCC
Confidence 34567777777765 77889999996
No 57
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=27.44 E-value=76 Score=22.14 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=14.5
Q ss_pred chhHHHHHHHHHHhHcCCCCCCcEEEecCCeEE
Q 044614 95 TSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWL 127 (151)
Q Consensus 95 tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYl 127 (151)
.++...++.+.+...+ |+..+++|+|+..
T Consensus 75 ~~~~~~~~~~~~~l~~----~~~i~ifPEG~~~ 103 (132)
T PF01553_consen 75 KKNRKALKDIKEILRK----GGSIVIFPEGTRS 103 (132)
T ss_dssp HHHHHHHHHHHHHHHC-------EEE-TT-S--
T ss_pred cccchhHHHHHHHhhh----cceeeecCCccCc
Confidence 4555556666665554 6779999999643
No 58
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=26.52 E-value=99 Score=20.73 Aligned_cols=28 Identities=39% Similarity=0.533 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHhHcCCCCCCcEEEecCCeEE
Q 044614 96 SNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWL 127 (151)
Q Consensus 96 DdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYl 127 (151)
.+.+.+.+.++...+ |+..+++|+|+..
T Consensus 60 ~~~~~~~~~~~~l~~----~~~~~ifPeG~~~ 87 (118)
T smart00563 60 LARAALREAVRLLRD----GGWLLIFPEGTRS 87 (118)
T ss_pred HHHHHHHHHHHHHhC----CCEEEEeCCcccC
Confidence 567777777775543 6778999999753
No 59
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=25.91 E-value=65 Score=24.72 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=16.5
Q ss_pred HHHHHHHHHhHcCCCCCCcEEEecCCe
Q 044614 99 EAFRKAVRYMQGFGDKGGAQLNVPEGL 125 (151)
Q Consensus 99 ~AfQ~AIdaa~~~~~~GGg~V~VPaGt 125 (151)
++++++.+.+.+ .++...+++|+|+
T Consensus 81 ~~~~~~~~~l~~--g~~~~l~IFPEGt 105 (163)
T cd07988 81 GLVEQVVEEFRR--REEFVLAIAPEGT 105 (163)
T ss_pred cHHHHHHHHHHh--CCCcEEEEeCCCC
Confidence 456666666665 1233589999996
No 60
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=25.52 E-value=94 Score=24.27 Aligned_cols=27 Identities=33% Similarity=0.365 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHhHcCCCCCCcEEEecCCeE
Q 044614 96 SNTEAFRKAVRYMQGFGDKGGAQLNVPEGLW 126 (151)
Q Consensus 96 DdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtY 126 (151)
...++++.+.+.+.+ |...+++|+|+.
T Consensus 95 ~~~~~~~~~~~~l~~----G~~l~IFPEGtr 121 (203)
T cd07992 95 SNAAVFDAVGEALKA----GGAIGIFPEGGS 121 (203)
T ss_pred hHHHHHHHHHHHHhC----CCEEEEeCCCCC
Confidence 346677777777765 778899999974
No 61
>cd07983 LPLAT_DUF374-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.
Probab=24.94 E-value=1e+02 Score=23.47 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHhHcCCCCCCcEEEecCCe
Q 044614 96 SNTEAFRKAVRYMQGFGDKGGAQLNVPEGL 125 (151)
Q Consensus 96 DdT~AfQ~AIdaa~~~~~~GGg~V~VPaGt 125 (151)
...+++.++++.+++ |...+++|.|+
T Consensus 82 ~~~~~~~~~~~~lk~----g~~v~ifpeG~ 107 (189)
T cd07983 82 GGAAALREMLRALKD----GYNIAITPDGP 107 (189)
T ss_pred cHHHHHHHHHHHHhC----CCEEEEcCCCC
Confidence 456788888888875 77888999996
No 62
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=24.03 E-value=73 Score=27.56 Aligned_cols=35 Identities=34% Similarity=0.566 Sum_probs=22.8
Q ss_pred eEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCC
Q 044614 81 AMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEG 124 (151)
Q Consensus 81 ~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaG 124 (151)
.+-|.+-||-.| ++|.+.+.++++ .+|.+||||.|
T Consensus 88 dlvv~SvGALaD------~~~~~~l~~~A~---~~g~~i~ipSG 122 (267)
T PRK13301 88 DMIICSAGALAD------DALRARLIAAAE---AGGARIRVPAG 122 (267)
T ss_pred CEEEEChhHhcC------HHHHHHHHHHHH---hCCCEEEEeCh
Confidence 344556666665 235556655444 58999999998
No 63
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=22.81 E-value=1.7e+02 Score=23.06 Aligned_cols=45 Identities=18% Similarity=0.405 Sum_probs=29.8
Q ss_pred HHHHHHHhHcCCCCC-CcEEEecCC--eEEEeeeEECCCeEEEEcCCc
Q 044614 101 FRKAVRYMQGFGDKG-GAQLNVPEG--LWLTGSFNLTSNFTLFLERGA 145 (151)
Q Consensus 101 fQ~AIdaa~~~~~~G-Gg~V~VPaG--tYltg~L~LkSnvtL~l~~GA 145 (151)
|+.+++.+......+ |..+.||-| -|.-+.+...+.+.+.|..|-
T Consensus 39 ~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~ 86 (145)
T COG1730 39 LQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGY 86 (145)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCce
Confidence 555665443311122 458888855 799998888888888887774
No 64
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=22.17 E-value=2.1e+02 Score=26.14 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=36.0
Q ss_pred eEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCC-eEE-EeeeEECCCeEEEEcCCcEEEc
Q 044614 81 AMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEG-LWL-TGSFNLTSNFTLFLERGAVMLG 149 (151)
Q Consensus 81 ~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaG-tYl-tg~L~LkSnvtL~l~~GAvIlg 149 (151)
.=.|+.|=..++. | ++.||+. -++|.+-|| +|. +.++.|++...+ +..||+|+-
T Consensus 43 FEqvkt~~~~P~e--D----le~~I~~--------haKVaL~Pg~~Y~i~~~V~I~~~cYI-iGnGA~V~v 98 (386)
T PF01696_consen 43 FEQVKTYWMEPGE--D----LEEAIRQ--------HAKVALRPGAVYVIRKPVNIRSCCYI-IGNGATVRV 98 (386)
T ss_pred eEeEEEEEcCCCc--C----HHHHHHh--------cCEEEeCCCCEEEEeeeEEecceEEE-ECCCEEEEE
Confidence 3357777777763 3 5556643 335666555 798 689999998887 556888763
No 65
>PF13132 DUF3950: Domain of unknown function (DUF3950)
Probab=22.06 E-value=40 Score=20.27 Aligned_cols=14 Identities=50% Similarity=0.672 Sum_probs=10.8
Q ss_pred hhhhhhhhhhcCCCC
Q 044614 4 KEKAMKSEKLKGNFS 18 (151)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (151)
-|++|++|+ .||++
T Consensus 5 I~~a~~~~~-~~NFS 18 (30)
T PF13132_consen 5 IEIALEQEG-SGNFS 18 (30)
T ss_pred HHHHHHhcc-CcChH
Confidence 467888888 77775
No 66
>TIGR01981 sufD FeS assembly protein SufD, group 1. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=21.96 E-value=1.5e+02 Score=25.89 Aligned_cols=41 Identities=20% Similarity=0.390 Sum_probs=26.4
Q ss_pred HHHHhHcCCCCCCcEEEecCCeEEEeeeEE------------CCCeEEEEcCCcEE
Q 044614 104 AVRYMQGFGDKGGAQLNVPEGLWLTGSFNL------------TSNFTLFLERGAVM 147 (151)
Q Consensus 104 AIdaa~~~~~~GGg~V~VPaGtYltg~L~L------------kSnvtL~l~~GAvI 147 (151)
|++.+.. ..|..|+||+|+-+..||.+ ..++.+.+++||.+
T Consensus 85 aln~a~~---~~G~~i~v~~~~~~~~Pi~i~~~~~~~~~~~~~~~~~i~v~~~s~~ 137 (366)
T TIGR01981 85 ALNAALF---NDGTVLYVPKGVEVEEPIEIKFIGVGGEKNFVHPRLLIIVEKGSKI 137 (366)
T ss_pred HHHHHHh---CCeEEEEECCCCCcCCCEEEEEEEcCCCccceeeEEEEEECCCCEE
Confidence 4544433 57899999999665555444 22456777777654
No 67
>COG0204 PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
Probab=21.61 E-value=1.1e+02 Score=23.71 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=21.1
Q ss_pred HHHHHHHHHhHcCCCCCCcEEEecCCeEEE
Q 044614 99 EAFRKAVRYMQGFGDKGGAQLNVPEGLWLT 128 (151)
Q Consensus 99 ~AfQ~AIdaa~~~~~~GGg~V~VPaGtYlt 128 (151)
..+++++..+.+ .|...+++|+||-..
T Consensus 125 ~~~~~~~~~~~~---~g~~l~iFPEGtr~~ 151 (255)
T COG0204 125 ETLRAAVARLKA---GGRSLVIFPEGTRSR 151 (255)
T ss_pred HHHHHHHHHHHh---CCcEEEECCCcCcCC
Confidence 678888888876 457889999998643
No 68
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=21.46 E-value=1.7e+02 Score=25.32 Aligned_cols=46 Identities=33% Similarity=0.527 Sum_probs=34.1
Q ss_pred CCCCCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCe
Q 044614 75 LPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGL 125 (151)
Q Consensus 75 ~~~~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGt 125 (151)
++.....+||..||-..+ +|+.++.-|+++... +.|...|.||+|-
T Consensus 132 lkk~~Vaidii~FGE~~~----~~e~l~~fida~N~~-~~gshlv~Vppg~ 177 (259)
T KOG2884|consen 132 LKKNKVAIDIINFGEAEN----NTEKLFEFIDALNGK-GDGSHLVSVPPGP 177 (259)
T ss_pred HHhcCeeEEEEEeccccc----cHHHHHHHHHHhcCC-CCCceEEEeCCCc
Confidence 455667899999997554 488888888888652 2345578999997
No 69
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=20.19 E-value=1.6e+02 Score=26.77 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=29.5
Q ss_pred CeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCe
Q 044614 79 KVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGL 125 (151)
Q Consensus 79 ~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGt 125 (151)
+.++|+ .+|. ..|..|.+..++++++++.. ..|..|++++|+
T Consensus 151 p~VInl-SlG~-~~g~~~g~~~l~~~i~~~~~---~~gv~vV~aaGN 192 (455)
T cd07478 151 PLVINI-SLGT-NFGSHDGTSLLERYIDAISR---LRGIAVVVGAGN 192 (455)
T ss_pred CeEEEE-ccCc-CCCCCCCccHHHHHHHHHHh---hCCeEEEEeCCC
Confidence 456666 5775 33456777789999998766 347788888884
Done!