Query 044614
Match_columns 151
No_of_seqs 227 out of 1215
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 08:23:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jur_A EXO-poly-alpha-D-galact 99.8 8.2E-19 2.8E-23 154.6 7.2 72 75-151 21-92 (448)
2 1h80_A IOTA-carrageenase; hydr 99.7 7.6E-18 2.6E-22 149.6 8.6 73 75-150 15-89 (464)
3 2uvf_A Exopolygalacturonase; G 99.7 2.9E-17 1E-21 148.9 6.7 71 76-151 151-221 (608)
4 2pyg_A Poly(beta-D-mannuronate 99.6 1.6E-16 5.4E-21 132.7 6.3 67 81-150 2-78 (377)
5 2vbk_A Tailspike-protein; vira 99.6 5.1E-16 1.7E-20 139.1 5.9 70 79-150 49-123 (514)
6 1rmg_A Rgase A, rhamnogalactur 99.5 1E-14 3.5E-19 127.1 7.0 66 79-150 18-86 (422)
7 3eqn_A Glucan 1,3-beta-glucosi 99.5 4.3E-14 1.5E-18 132.2 6.3 73 78-150 46-127 (758)
8 2x6w_A Tail spike protein; vir 99.5 7.1E-14 2.4E-18 128.0 7.2 63 79-150 49-124 (600)
9 3gq8_A Preneck appendage prote 99.4 1.2E-13 4.2E-18 126.7 5.9 65 78-150 19-86 (609)
10 1bhe_A PEHA, polygalacturonase 99.4 4.6E-13 1.6E-17 114.3 7.1 66 75-151 9-77 (376)
11 3gqn_A Preneck appendage prote 99.4 2.9E-13 1E-17 126.8 4.8 65 78-150 19-86 (772)
12 3eqn_A Glucan 1,3-beta-glucosi 99.3 9.2E-13 3.1E-17 123.3 5.0 67 79-150 398-465 (758)
13 1x0c_A Isopullulanase; glycosi 98.5 5.2E-09 1.8E-13 94.5 -2.4 69 81-150 142-237 (549)
14 2inu_A Insulin fructotransfera 98.0 4.4E-06 1.5E-10 73.8 4.5 68 79-146 12-90 (410)
15 1ogo_X Dextranase; hydrolase, 97.9 5.7E-06 1.9E-10 75.4 4.3 37 114-150 229-279 (574)
16 2iq7_A Endopolygalacturonase; 97.7 3.8E-06 1.3E-10 70.9 -0.1 44 96-144 6-50 (339)
17 1hg8_A Endopolygalacturonase; 97.7 5.8E-06 2E-10 70.2 0.2 41 97-142 7-48 (349)
18 1nhc_A Polygalacturonase I; be 97.6 7.5E-06 2.6E-10 69.0 -0.9 43 95-142 5-48 (336)
19 1ia5_A Polygalacturonase; glyc 97.4 2.5E-05 8.6E-10 66.0 0.1 42 97-143 11-53 (339)
20 1czf_A Polygalacturonase II; b 97.2 4.8E-05 1.6E-09 65.0 -0.1 42 98-144 35-77 (362)
21 1k5c_A Endopolygalacturonase; 96.8 8.5E-05 2.9E-09 62.9 -2.6 41 98-144 8-48 (335)
22 1xg2_A Pectinesterase 1; prote 93.8 0.1 3.5E-06 44.0 5.9 48 101-150 18-70 (317)
23 1gq8_A Pectinesterase; hydrola 93.5 0.12 4.2E-06 43.6 5.9 48 101-150 22-74 (319)
24 1dbg_A Chondroitinase B; beta 92.7 0.15 5.1E-06 45.7 5.5 47 98-149 31-85 (506)
25 1ru4_A Pectate lyase, PEL9A; p 92.3 0.27 9.4E-06 42.4 6.6 66 78-148 13-95 (400)
26 2x3h_A K5 lyase, K5A lyase; ba 90.8 0.17 5.9E-06 44.5 3.7 46 80-133 63-108 (542)
27 3uw0_A Pectinesterase; right-h 89.0 0.62 2.1E-05 40.1 5.7 48 99-149 45-95 (364)
28 2nsp_A Pectinesterase A; micha 87.8 0.67 2.3E-05 39.4 5.1 47 101-150 21-70 (342)
29 3ju4_A Endo-N-acetylneuraminid 80.1 0.57 2E-05 42.7 1.4 23 87-109 4-26 (670)
30 3grh_A YBHC, acyl-COA thioeste 79.8 2.9 0.0001 36.9 5.8 43 100-143 91-136 (422)
31 2qy1_A Pectate lyase II; GAG l 40.3 19 0.00065 30.1 3.1 46 99-149 24-85 (330)
32 1pcl_A Pectate lyase E; lyase 38.6 70 0.0024 27.0 6.4 48 97-149 32-95 (355)
33 1x0c_A Isopullulanase; glycosi 30.7 60 0.0021 29.0 4.9 37 114-150 220-258 (549)
34 1j5p_A Aspartate dehydrogenase 27.8 42 0.0015 27.3 3.2 23 99-124 98-120 (253)
35 1idk_A Pectin lyase A; signal, 27.2 1.4E+02 0.0049 25.1 6.5 20 130-149 103-123 (359)
36 4dn7_A ABC transporter, ATP-bi 23.4 56 0.0019 28.4 3.3 42 103-147 141-193 (429)
37 1v74_A Colicin D; colicin D - 22.6 87 0.003 22.8 3.7 56 83-145 21-83 (107)
38 1iuq_A Glycerol-3-phosphate ac 20.9 68 0.0023 27.8 3.2 30 96-128 207-237 (367)
No 1
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima}
Probab=99.75 E-value=8.2e-19 Score=154.62 Aligned_cols=72 Identities=33% Similarity=0.588 Sum_probs=67.6
Q ss_pred CCCCCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEECCCeEEEEcCCcEEEcCC
Q 044614 75 LPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGSQ 151 (151)
Q Consensus 75 ~~~~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~LkSnvtL~l~~GAvIlgS~ 151 (151)
|..++.++||+||||+|||++|||+|||+||++|++ .||++|+||+|+|++++|.|+|+++|+++ ++|+||+
T Consensus 21 p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~c~~---~ggg~v~vP~G~yl~~~l~l~s~v~l~l~--gtL~~s~ 92 (448)
T 3jur_A 21 PQIPDREVNLLDFGARGDGRTDCSESFKRAIEELSK---QGGGRLIVPEGVFLTGPIHLKSNIELHVK--GTIKFIP 92 (448)
T ss_dssp CCCCSCEEEGGGGTCCCEEEEECHHHHHHHHHHHHH---HTCEEEEECSSEEEESCEECCTTEEEEES--SEEEECC
T ss_pred CCCCCcEEEEEecccCCCCCeecHHHHHHHHHhhhh---cCCeEEEECCCcEEEeeeEeCCCcEEEEE--EEEEecC
Confidence 566778999999999999999999999999999987 68999999999999999999999999999 8999984
No 2
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A
Probab=99.72 E-value=7.6e-18 Score=149.63 Aligned_cols=73 Identities=22% Similarity=0.459 Sum_probs=68.1
Q ss_pred CCCCCeeEE-eeecCccCCCcchhHHHHHHHHHHhHcCCCC-CCcEEEecCCeEEEeeeEECCCeEEEEcCCcEEEcC
Q 044614 75 LPERKVAMS-IKDFGGVGDGTTSNTEAFRKAVRYMQGFGDK-GGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGS 150 (151)
Q Consensus 75 ~~~~~~~~n-V~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~-GGg~V~VPaGtYltg~L~LkSnvtL~l~~GAvIlgS 150 (151)
+..+...++ |+||||+|||.+|||+|||+||++|++ . ++++|+||+|+|++++|.|+|+++|++++||+|+++
T Consensus 15 p~~~~~~~~~V~dfGA~gDG~tDdT~Aiq~Aidac~~---~~ggg~V~vP~GtYl~g~I~lks~v~L~l~~GatL~~s 89 (464)
T 1h80_A 15 PTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISR---KPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKPT 89 (464)
T ss_dssp CSCCSEEEEHHHHHCCCTTSSSBCHHHHHHHHHHHHT---STTCEEEEECSSEEEECSEECCTTEEEEECTTCEEEEC
T ss_pred CCCCcceeeehhccCcCCCCCchhHHHHHHHHHHHhh---ccCCcEEEECCCeEEEeeEeccCceEEEEcCCcEEEec
Confidence 455667899 999999999999999999999999987 5 789999999999999999999999999999999987
No 3
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*
Probab=99.68 E-value=2.9e-17 Score=148.87 Aligned_cols=71 Identities=34% Similarity=0.674 Sum_probs=65.3
Q ss_pred CCCCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEECCCeEEEEcCCcEEEcCC
Q 044614 76 PERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGSQ 151 (151)
Q Consensus 76 ~~~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~LkSnvtL~l~~GAvIlgS~ 151 (151)
..++..+||++|||+|||++|||+|||+||++|.. |++|+||+|+|++++|.|+|+++|++++||+|++++
T Consensus 151 ~~~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~c~~-----g~~v~vP~G~y~~g~i~lks~v~L~l~~gatL~~s~ 221 (608)
T 2uvf_A 151 SAKPQIVNVRDFGAIDDGKTLNTKAIQQAIDSCKP-----GCRVEIPAGTYKSGALWLKSDMTLNLQAGAILLGSE 221 (608)
T ss_dssp CCCCCEEEGGGGTCCSSSSCCCHHHHHHHHHTCCT-----TEEEEECSEEEEECCEECCSSEEEEECTTEEEEECS
T ss_pred ccCCCEEecccccccCCCCccCHHHHHHHHHhcCC-----CCEEEECCCceEecceeccCceEEEecCCcEEEecC
Confidence 34567899999999999999999999999997743 889999999999999999999999999999999974
No 4
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*
Probab=99.64 E-value=1.6e-16 Score=132.72 Aligned_cols=67 Identities=25% Similarity=0.461 Sum_probs=60.6
Q ss_pred eEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEE--------eeeEECCCeEEEEc-CC-cEEEcC
Q 044614 81 AMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLT--------GSFNLTSNFTLFLE-RG-AVMLGS 150 (151)
Q Consensus 81 ~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYlt--------g~L~LkSnvtL~l~-~G-AvIlgS 150 (151)
.+||+||||+|||.+|||+|||+||++|++ .|+++|+||+|+|++ ++|.++++++|+++ +| ++|+++
T Consensus 2 ~~~v~~~ga~~dg~~ddt~aiq~Ai~~a~~---~gg~~v~~p~G~y~~~~~~~~~~g~l~~~~~v~l~g~g~~~t~l~~~ 78 (377)
T 2pyg_A 2 DYNVKDFGALGDGVSDDRASIQAAIDAAYA---AGGGTVYLPAGEYRVSAAGEPGDGCLMLKDGVYLAGAGMGETVIKLI 78 (377)
T ss_dssp CEEGGGGTCCCEEEEECHHHHHHHHHHHHH---TTSEEEEECSEEEEECCCSSGGGCSEECCTTEEEEESSBTTEEEEEC
T ss_pred EeeeeecCCCCCCCcchHHHHHHHHHHHHh---cCCCEEEECCeEEEEcccccCCcccEEecCCeEEEEcCCCCcEEEec
Confidence 689999999999999999999999999987 689999999999997 58999999999999 56 566654
No 5
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A*
Probab=99.60 E-value=5.1e-16 Score=139.15 Aligned_cols=70 Identities=26% Similarity=0.368 Sum_probs=63.1
Q ss_pred CeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCC----eEEE-eeeEECCCeEEEEcCCcEEEcC
Q 044614 79 KVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEG----LWLT-GSFNLTSNFTLFLERGAVMLGS 150 (151)
Q Consensus 79 ~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaG----tYlt-g~L~LkSnvtL~l~~GAvIlgS 150 (151)
+..+||+||||+|||++|||+|||+||++|++ ..+|++||||+| +|++ ++|+|++|++|+++.+++|+++
T Consensus 49 s~~~NVkDFGAkGDGvTDDTaAIQkAIdaA~a--~~GGGtVyVPaG~~~~tYlvt~tI~LkSnV~L~Ge~~AtIl~s 123 (514)
T 2vbk_A 49 KEAISILDFGVIDDGVTDNYQAIQNAIDAVAS--LPSGGELFIPASNQAVGYIVGSTLLIPGGVNIRGVGKASQLRA 123 (514)
T ss_dssp TTCCBGGGGCCCCSSSSCCHHHHHHHHHHHHT--STTCEEEECCCCSSTTCEEESSCEEECTTEEEECCSTTSEEEE
T ss_pred CcEEEeeccCcCCCCCcccHHHHHHHHHHHhh--cCCCeEEEECCCCcceeEEECCeEEecCCeEEEEecCceEeec
Confidence 46899999999999999999999999999876 137899999999 8986 6899999999999999988654
No 6
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3
Probab=99.52 E-value=1e-14 Score=127.14 Aligned_cols=66 Identities=23% Similarity=0.348 Sum_probs=58.9
Q ss_pred CeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEee-eEEC--CCeEEEEcCCcEEEcC
Q 044614 79 KVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGS-FNLT--SNFTLFLERGAVMLGS 150 (151)
Q Consensus 79 ~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~-L~Lk--SnvtL~l~~GAvIlgS 150 (151)
..++||+||||++||++|||+|||+||++|. ++++|+||+|+|++++ |.|+ ++++|+++ |+++.++
T Consensus 18 ~~~~~V~~~GA~~dg~tddT~Aiq~Ai~ac~-----~g~~V~vP~G~Yli~~~l~l~g~s~v~l~l~-G~~l~~~ 86 (422)
T 1rmg_A 18 TKTCNILSYGAVADNSTDVGPAITSAWAACK-----SGGLVYIPSGNYALNTWVTLTGGSATAIQLD-GIIYRTG 86 (422)
T ss_dssp HCEEEGGGGTCCCSSSSBCHHHHHHHHHHHT-----BTCEEEECSSEEEECSCEEEESCEEEEEEEC-SEEEECC
T ss_pred CcEEEeeeccccCCCCcccHHHHHHHHHHCC-----CCCEEEECCCeEEeCCceeecCCCeEEEEEc-CcEEccc
Confidence 4589999999999999999999999999884 4889999999999986 9998 68999987 8887754
No 7
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*
Probab=99.46 E-value=4.3e-14 Score=132.18 Aligned_cols=73 Identities=22% Similarity=0.344 Sum_probs=61.1
Q ss_pred CCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCC------CCCcEEEecCCeEE-EeeeEECCCeEEEEcCC--cEEE
Q 044614 78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGD------KGGAQLNVPEGLWL-TGSFNLTSNFTLFLERG--AVML 148 (151)
Q Consensus 78 ~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~------~GGg~V~VPaGtYl-tg~L~LkSnvtL~l~~G--AvIl 148 (151)
.+..+||+||||+|||++|||+|||+||+++.+... ..+++||||+|+|+ +++|+++++++|..+.. .+|+
T Consensus 46 y~v~~nV~dfGA~GDG~tDDT~Aiq~Ai~~a~~~Gggc~~st~~~~~V~~P~GtYlvs~tI~l~~~t~L~G~~~~~pvIk 125 (758)
T 3eqn_A 46 YPVFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVSSPLVVLYQTQLIGDAKNLPTLL 125 (758)
T ss_dssp CCSEEEGGGGTCCCEEEEECHHHHHHHHHTTSCSCTTCCCCSSSCEEEEECSSEEEESSCEECCTTEEEEECSSSCCEEE
T ss_pred CeEEEEHHHcCcCCCCCchhHHHHHHHHHHhhhcccccccccccceEEEECCceEEEcccEEccCCeEEEecCCCCCeEe
Confidence 445789999999999999999999999998865210 11269999999998 67999999999999987 5887
Q ss_pred cC
Q 044614 149 GS 150 (151)
Q Consensus 149 gS 150 (151)
++
T Consensus 126 a~ 127 (758)
T 3eqn_A 126 AA 127 (758)
T ss_dssp EC
T ss_pred cC
Confidence 65
No 8
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A*
Probab=99.45 E-value=7.1e-14 Score=128.05 Aligned_cols=63 Identities=25% Similarity=0.447 Sum_probs=59.0
Q ss_pred CeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCC-eEEE------------eeeEECCCeEEEEcCCc
Q 044614 79 KVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEG-LWLT------------GSFNLTSNFTLFLERGA 145 (151)
Q Consensus 79 ~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaG-tYlt------------g~L~LkSnvtL~l~~GA 145 (151)
...+||+||||++| ||+|||+||++|++ .||++|+||+| +|++ |+|.|+||++|+++.
T Consensus 49 ~~~~nV~dfGA~gD----dT~AIqkAIdaCs~---~GGgtV~VPaG~tYLt~sv~~gp~~~~sGpI~LkSnVtL~LdG-- 119 (600)
T 2x6w_A 49 DPSGNVIQPGPNVD----SRQYLQAAIDYVSS---NGGGTITIPAGYTWYLGSYGVGGIAGHSGIIQLRSNVNLNIEG-- 119 (600)
T ss_dssp CTTSCBCCCCTTCC----CHHHHHHHHHHHHH---TTCEEEEECTTCEEEECSCCCGGGGGGTEEEECCTTEEEEECS--
T ss_pred CcEEeeecCCCCcc----CHHHHHHHHHHhhh---cCCCEEEECCCCEEEecccccccccccccceEEcCceEEeeec--
Confidence 35899999999999 99999999999987 78999999999 9999 999999999999997
Q ss_pred EEEcC
Q 044614 146 VMLGS 150 (151)
Q Consensus 146 vIlgS 150 (151)
+|+++
T Consensus 120 tL~as 124 (600)
T 2x6w_A 120 RIHLS 124 (600)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 88876
No 9
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A
Probab=99.42 E-value=1.2e-13 Score=126.66 Aligned_cols=65 Identities=32% Similarity=0.489 Sum_probs=57.9
Q ss_pred CCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEE-eeeEECCCeEEEEcC--CcEEEcC
Q 044614 78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLT-GSFNLTSNFTLFLER--GAVMLGS 150 (151)
Q Consensus 78 ~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYlt-g~L~LkSnvtL~l~~--GAvIlgS 150 (151)
++.++||+||||+|||++|||+|||+||++ | ++|+||+|+|++ ++|.|+++++|+++. .++|.++
T Consensus 19 ~~~~~nV~dfGA~gDG~tDdT~Aiq~Ai~~-------G-g~V~iP~GtYlis~~l~l~snv~L~g~g~~~t~L~~~ 86 (609)
T 3gq8_A 19 KQFGVSVKTYGAKGDGVTDDIRAFEKAIES-------G-FPVYVPYGTFMVSRGIKLPSNTVLTGAGKRNAVIRFM 86 (609)
T ss_dssp CSSSEEGGGGTCCCEEEEECHHHHHHHHHT-------S-SCEEECSEEEEESSCEEECSSEEEEESCTTTEEEEEC
T ss_pred CCcEEEeEecccCCCCCchhHHHHHHHHHc-------C-CEEEECCccEEEeCceEECCCcEEEEeeCCCCEEEeC
Confidence 346899999999999999999999999983 3 899999999998 999999999999986 4677754
No 10
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3
Probab=99.38 E-value=4.6e-13 Score=114.26 Aligned_cols=66 Identities=15% Similarity=0.356 Sum_probs=54.2
Q ss_pred CCCCCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecC---CeEEEeeeEECCCeEEEEcCCcEEEcCC
Q 044614 75 LPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPE---GLWLTGSFNLTSNFTLFLERGAVMLGSQ 151 (151)
Q Consensus 75 ~~~~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPa---GtYltg~L~LkSnvtL~l~~GAvIlgS~ 151 (151)
|..+. +++|.+|| .+|||+|||+||++|.+ |++++||+ |+|++|+|.|+|+++|++++||+|+|++
T Consensus 9 p~~p~-~~~v~~~G-----~~~dT~aiq~Ai~ac~~-----Gg~v~~~~~~~g~yl~g~i~l~s~vtL~l~~Ga~L~~s~ 77 (376)
T 1bhe_A 9 PKTPS-SCTTLKAD-----SSTATSTIQKALNNCDQ-----GKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRAVN 77 (376)
T ss_dssp CCCCC-EEEEEECC-----SSBCHHHHHHHHTTCCT-----TCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEECS
T ss_pred CCCCC-eEEECCCC-----CCccHHHHHHHHHHhcc-----CCcEEEECCCCceEEEeEEEECCCCEEEECCCeEEEeCC
Confidence 34444 69999986 47999999999997754 45555553 8999999999999999999999999973
No 11
>3gqn_A Preneck appendage protein; beta helix, beta barrel, ATP binding, viral protein; HET: ATP; 2.15A {Bacillus phage PHI29} PDB: 3suc_A*
Probab=99.36 E-value=2.9e-13 Score=126.78 Aligned_cols=65 Identities=32% Similarity=0.489 Sum_probs=57.5
Q ss_pred CCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEE-eeeEECCCeEEEEcC--CcEEEcC
Q 044614 78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLT-GSFNLTSNFTLFLER--GAVMLGS 150 (151)
Q Consensus 78 ~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYlt-g~L~LkSnvtL~l~~--GAvIlgS 150 (151)
+..++||+||||+|||++|||+|||+||++ | ++|+||+|+|++ ++|.|+++++|+++. .++|.++
T Consensus 19 ~~~~~nV~dfGA~gDG~tDdT~Aiq~Ai~a-------G-g~V~IPaGtYlisg~I~L~snv~L~Geg~~~t~Lk~~ 86 (772)
T 3gqn_A 19 KQFGVSVKTYGAKGDGVTDDIRAFEKAIES-------G-FPVYVPYGTFMVSRGIKLPSNTVLTGAGKRNAVIRFM 86 (772)
T ss_dssp CSSSEESGGGTCCCEEEEECHHHHHHHHHT-------T-SCEEECSEEEEESSCEEECSSCEEEEEEEEEEEEEEC
T ss_pred CCcEEEeEecccCCCCChhHHHHHHHHHHc-------C-CEEEECCccEEEEeEEEECCCcEEEEecCCCCEEEeC
Confidence 346899999999999999999999999982 3 899999999998 999999999999986 3677654
No 12
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*
Probab=99.31 E-value=9.2e-13 Score=123.26 Aligned_cols=67 Identities=21% Similarity=0.370 Sum_probs=60.7
Q ss_pred CeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEE-EeeeEECCCeEEEEcCCcEEEcC
Q 044614 79 KVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWL-TGSFNLTSNFTLFLERGAVMLGS 150 (151)
Q Consensus 79 ~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYl-tg~L~LkSnvtL~l~~GAvIlgS 150 (151)
..++||+||||+|||+||||+|||+||+++ .++.+||||+|+|+ +++|+++++++|..+.-++|+++
T Consensus 398 ~~~vnVkd~GA~GDG~tDDT~Ai~~al~aa-----~~g~~v~~P~G~Y~vt~Ti~ip~~~~ivG~~~~~I~~~ 465 (758)
T 3eqn_A 398 SDFVSVRSQGAKGDGHTDDTQAIKNVFAKY-----AGCKIIFFDAGTYIVTDTIQIPAGTQIVGEVWSVIMGT 465 (758)
T ss_dssp GGEEETTTTTCCCEEEEECHHHHHHHHHHH-----TTTSEEECCSEEEEESSCEEECTTCEEECCSSEEEEEC
T ss_pred cceEEeeeccccCCCCchhHHHHHHHHHHh-----cCCCEEEECCCEeEECCeEEcCCCCEEEecccceEecC
Confidence 468999999999999999999999999954 35889999999998 68899999999999988999874
No 13
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*
Probab=98.51 E-value=5.2e-09 Score=94.45 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=55.0
Q ss_pred eEEeeecCccCCCcchhHHHHHHHHH-HhHcCC----C------------------CCCcEEEecCCeEEE---eeeEEC
Q 044614 81 AMSIKDFGGVGDGTTSNTEAFRKAVR-YMQGFG----D------------------KGGAQLNVPEGLWLT---GSFNLT 134 (151)
Q Consensus 81 ~~nV~dFGA~gDG~tDdT~AfQ~AId-aa~~~~----~------------------~GGg~V~VPaGtYlt---g~L~Lk 134 (151)
.+|...|||++||.+|++++|. .|. .+.... . .++++|+||+|+|++ |+|.++
T Consensus 142 ~~n~~~~~~~~dg~~~~~~~l~-ifa~p~~~~~~~P~~~~~~~~~~~~g~~~~~~~~ggg~v~vP~G~yl~g~~G~i~l~ 220 (549)
T 1x0c_A 142 EFDDDLISLAPSGARQPENALL-IFASPFENSSTKPQPGSPNSIAPAPGRVLGLNTTSASTVVFNPGVYYFTGHDHMVLS 220 (549)
T ss_dssp EEGGGEEEETTTTEEEESEEEE-EEEECCCCTTTSCCTTCSSEECCCSEECCCTTTCCCSEEEECSEEEECCTTCCEEEC
T ss_pred EECCccccccccCcCCCcceEE-EEcCChhhccCCCCcCCCCceeeccccccccccCCCCEEEECCeEEecCCceEEEec
Confidence 3444579999999999999988 443 232210 1 478999999999996 699999
Q ss_pred CCeE-EEEcCCcEEEcC
Q 044614 135 SNFT-LFLERGAVMLGS 150 (151)
Q Consensus 135 Snvt-L~l~~GAvIlgS 150 (151)
||++ |++++||+|+|+
T Consensus 221 s~~~~L~l~~GA~L~gs 237 (549)
T 1x0c_A 221 SSVTWVYFAPGAYVKGA 237 (549)
T ss_dssp TTCCEEEECTTEEEESC
T ss_pred CCCCeEecCCCCEEEEE
Confidence 9999 999999999875
No 14
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*
Probab=97.99 E-value=4.4e-06 Score=73.81 Aligned_cols=68 Identities=9% Similarity=0.086 Sum_probs=57.0
Q ss_pred CeeEEeeec----CccCCCcchhHHHHHHHHHHhHcC----CCCCCcEEEecCCeEE-EeeeEECCC-eEEEEcC-CcE
Q 044614 79 KVAMSIKDF----GGVGDGTTSNTEAFRKAVRYMQGF----GDKGGAQLNVPEGLWL-TGSFNLTSN-FTLFLER-GAV 146 (151)
Q Consensus 79 ~~~~nV~dF----GA~gDG~tDdT~AfQ~AIdaa~~~----~~~GGg~V~VPaGtYl-tg~L~LkSn-vtL~l~~-GAv 146 (151)
...|||++| +++||+.+|++++|+++|..+.++ ..+.|.+|++|+|+|. .|++.+... ++|..+. |++
T Consensus 12 ~~~~~vt~~~~~~~~~~~~~~d~~~~i~~~ia~~~~~~~~~~A~pGdvI~L~~G~Y~l~g~ivIdkp~LtL~G~~~g~~ 90 (410)
T 2inu_A 12 PNTYDVTTWRIKAHPEVTAQSDIGAVINDIIADIKQRQTSPDARPGAAIIIPPGDYDLHTQVVVDVSYLTIAGFGHGFF 90 (410)
T ss_dssp CCEEETTTCCBTTBTTCCHHHHHHHHHHHHHHHHHHHCCCTTSCCCEEEECCSEEEEECSCEEECCTTEEEECSCCCCC
T ss_pred CceEEEEEecccCCCcCCCchhHHHHHHHHHHHhhcccccccCCCCCEEEECCCeeccCCcEEEecCcEEEEecCCCcc
Confidence 468999999 899999999999999999887531 1256899999999997 699999554 9999887 544
No 15
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X*
Probab=97.93 E-value=5.7e-06 Score=75.35 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=34.5
Q ss_pred CCCcEEEecCCeEEE-------------eeeEECCCeE-EEEcCCcEEEcC
Q 044614 114 KGGAQLNVPEGLWLT-------------GSFNLTSNFT-LFLERGAVMLGS 150 (151)
Q Consensus 114 ~GGg~V~VPaGtYlt-------------g~L~LkSnvt-L~l~~GAvIlgS 150 (151)
.||++||||+|+|++ |+|.++||++ |++++||+|+|+
T Consensus 229 ~ggg~v~vP~G~yl~~~~~~~gpc~~g~G~i~lkSnvt~L~L~~GA~l~g~ 279 (574)
T 1ogo_X 229 GAKSILYFPPGVYWMNQDQSGNSGKLGSNHIRLNSNTYWVYLAPGAYVKGA 279 (574)
T ss_dssp CSSSEEEECSEEEEECBCTTCCBSCSSSCCEECCTTCCEEEECTTEEEESC
T ss_pred CCCCEEEECCcEEEEeccccCCcccccceEEEecCCCceEEecCCcEEEcc
Confidence 478999999999999 6799999999 999999999985
No 16
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini}
Probab=97.74 E-value=3.8e-06 Score=70.88 Aligned_cols=44 Identities=20% Similarity=0.126 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeee-EECCCeEEEEcCC
Q 044614 96 SNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSF-NLTSNFTLFLERG 144 (151)
Q Consensus 96 DdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L-~LkSnvtL~l~~G 144 (151)
.||+|||+|+++|.+ .++++|+||+|+|+. + .|+++++|+++..
T Consensus 6 ~dt~aiq~ai~~c~~---~~g~~v~vP~G~~~~--l~~l~~~~~l~~~g~ 50 (339)
T 2iq7_A 6 TDAAAAIKGKASCTS---IILNGIVVPAGTTLD--MTGLKSGTTVTFQGK 50 (339)
T ss_dssp SCHHHHHHHGGGCSE---EEEESCEECTTCCEE--ECSCCTTCEEEEESE
T ss_pred CCHHHHHHHHHHhhc---cCCCeEEECCCEEEE--eeccCCCeEEEEeCc
Confidence 579999999999987 678999999999984 4 5578888887743
No 17
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3
Probab=97.69 E-value=5.8e-06 Score=70.24 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeee-EECCCeEEEEc
Q 044614 97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSF-NLTSNFTLFLE 142 (151)
Q Consensus 97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L-~LkSnvtL~l~ 142 (151)
||+|||+|+++|.. .++++|+||+|+|+. + .|+++++|+++
T Consensus 7 ~t~aiq~ai~~c~~---~gg~~v~vP~G~~l~--l~~l~~~~~l~~~ 48 (349)
T 1hg8_A 7 EYSGLATAVSSCKN---IVLNGFQVPTGKQLD--LSSLQNDSTVTFK 48 (349)
T ss_dssp SGGGHHHHHHHCSE---EEECCCEECTTCCEE--ETTCCTTCEEEEC
T ss_pred CHHHHHHHHHhccc---cCCCEEEECCCEEEE--eeccCCCeEEEEc
Confidence 68999999999987 678999999999984 4 56889999886
No 18
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3
Probab=97.56 E-value=7.5e-06 Score=69.00 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=36.0
Q ss_pred chhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeee-EECCCeEEEEc
Q 044614 95 TSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSF-NLTSNFTLFLE 142 (151)
Q Consensus 95 tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L-~LkSnvtL~l~ 142 (151)
..||+|||+|+++|.+ .++++|+||+|+|+. | .|+++++|+++
T Consensus 5 ~~~t~aiq~ai~~c~~---~gg~~v~vP~G~~~~--l~~l~~~~~l~~~ 48 (336)
T 1nhc_A 5 FTSASEASESISSCSD---VVLSSIEVPAGETLD--LSDAADGSTITFE 48 (336)
T ss_dssp ESSHHHHHHHGGGCSE---EEEESCEECTTCCEE--CTTCCTTCEEEEE
T ss_pred ECCHHHHHHHHHHhhc---cCCCeEEECCCEEEE--eeccCCCeEEEEe
Confidence 3579999999999987 678899999999983 4 55788888876
No 19
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*
Probab=97.39 E-value=2.5e-05 Score=65.97 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeee-EECCCeEEEEcC
Q 044614 97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSF-NLTSNFTLFLER 143 (151)
Q Consensus 97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L-~LkSnvtL~l~~ 143 (151)
-++|||+|+++|.+ .++++|+||+|+|+. | .|+++++|+++.
T Consensus 11 g~~aiq~ai~~c~~---~gg~~v~vP~G~~l~--l~~l~~~~~l~~~g 53 (339)
T 1ia5_A 11 GASSASKSKTSCST---IVLSNVAVPSGTTLD--LTKLNDGTHVIFSG 53 (339)
T ss_dssp HHHHHHHHGGGCSE---EEEESCEECTTCCEE--ECSCCTTCEEEEES
T ss_pred chHHHHHHHHHhhc---cCCCeEEECCCEEEE--eeccCCCeEEEEeC
Confidence 46799999999987 678899999999984 4 568899998874
No 20
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3
Probab=97.21 E-value=4.8e-05 Score=65.04 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeee-EECCCeEEEEcCC
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSF-NLTSNFTLFLERG 144 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L-~LkSnvtL~l~~G 144 (151)
+.|||+|+++|.. .++++|+||+|+|+. + .|+++++|+++..
T Consensus 35 ~~aiq~ai~~c~~---~~g~~v~vP~G~~l~--l~~l~~~~~l~~~g~ 77 (362)
T 1czf_A 35 AAAAKAGKAKCST---ITLNNIEVPAGTTLD--LTGLTSGTKVIFEGT 77 (362)
T ss_dssp HHHHHHHGGGCSE---EEEESCEECTTCCEE--ECSCCTTCEEEEESE
T ss_pred HHHHHHHHHHhhc---cCCCEEEECCCEEEE--eeccCCCeEEEEeCc
Confidence 6799999999986 678899999999983 4 5688899988754
No 21
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A*
Probab=96.75 E-value=8.5e-05 Score=62.89 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEECCCeEEEEcCC
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERG 144 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~LkSnvtL~l~~G 144 (151)
+.|+|+ +++|.+ .++++|+||+|+|+ .|.++++++|+++..
T Consensus 8 ~~aiq~-i~aC~~---~gg~~v~vP~G~~l--~l~l~~~~~l~~~g~ 48 (335)
T 1k5c_A 8 VDDAKD-IAGCSA---VTLNGFTVPAGNTL--VLNPDKGATVTMAGD 48 (335)
T ss_dssp TTGGGG-CTTCSE---EEECCEEECTTCCE--EECCCTTCEEEECSC
T ss_pred HHHhHH-HHhccc---CCCCEEEECCCEEE--EEEeCCCeEEEEecc
Confidence 678999 999987 67899999999998 467789999988753
No 22
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum}
Probab=93.78 E-value=0.1 Score=44.02 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=35.9
Q ss_pred HHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEcC
Q 044614 101 FRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLGS 150 (151)
Q Consensus 101 fQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlgS 150 (151)
||+||+++... ....-+|+|.+|+|. ..+.+ +.+++|..+. .++|.++
T Consensus 18 Iq~AI~aap~~-~~~~~~I~I~~G~Y~-E~V~I~~~k~~Itl~G~g~~~tiI~~~ 70 (317)
T 1xg2_A 18 LAEAVAAAPDK-SKTRYVIYVKRGTYK-ENVEVASNKMNLMIVGDGMYATTITGS 70 (317)
T ss_dssp HHHHHHHSCSS-CSSCEEEEECSEEEE-CCEEECTTSCSEEEEESCTTTEEEEEC
T ss_pred HHHHHhhcccC-CCceEEEEEcCCEEe-eeeecCCCCCcEEEEEcCCCCcEEEec
Confidence 99999998651 122359999999996 67778 4679999886 5666654
No 23
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5
Probab=93.47 E-value=0.12 Score=43.57 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=35.6
Q ss_pred HHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEcC
Q 044614 101 FRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLGS 150 (151)
Q Consensus 101 fQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlgS 150 (151)
||+||+++... .....+|+|.+|+|. ..+.+ +.+++|..+. .++|.+.
T Consensus 22 Iq~AI~aap~~-~~~~~~I~I~~G~Y~-E~V~I~~~k~~Itl~G~g~~~tiI~~~ 74 (319)
T 1gq8_A 22 VSEAVAAAPED-SKTRYVIRIKAGVYR-ENVDVPKKKKNIMFLGDGRTSTIITAS 74 (319)
T ss_dssp HHHHHHHSCSS-CSSCEEEEECSEEEE-CCEEECTTCCSEEEEESCTTTEEEEEC
T ss_pred HHHHHHhcccc-CCceEEEEEcCCeEe-eeeeccCCCccEEEEEcCCCccEEEec
Confidence 99999998651 122359999999996 67788 4679998885 5666553
No 24
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*
Probab=92.67 E-value=0.15 Score=45.71 Aligned_cols=47 Identities=13% Similarity=0.228 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE------CCCeEEEEcC--CcEEEc
Q 044614 98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL------TSNFTLFLER--GAVMLG 149 (151)
Q Consensus 98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L------kSnvtL~l~~--GAvIlg 149 (151)
.+.||+|++.+.. |.+|+|++|+|.-+.+.+ ...++|.-+. +++|.|
T Consensus 31 ~~~Lq~Ai~~A~p-----GDtI~L~~GtY~~~~i~i~~sGt~~~pItl~~~~~~~~vi~G 85 (506)
T 1dbg_A 31 NETLYQVVKEVKP-----GGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTG 85 (506)
T ss_dssp HHHHHHHHHHCCT-----TCEEEECSEEEETCEEEECCCCBTTBCEEEEESSTTSEEEEE
T ss_pred HHHHHHHHHhCCC-----CCEEEECCCEEecceEEEecCCcCCCCEEEECCCCCccEEeC
Confidence 4569999998755 899999999998657777 4568887762 466665
No 25
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9
Probab=92.31 E-value=0.27 Score=42.43 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=42.2
Q ss_pred CCeeEEeeecCc-cCCCcchhHH-HHHHHHHHhHcCCCCCCcEEEecCCeEE-------EeeeEE-CCC-----eEEEEc
Q 044614 78 RKVAMSIKDFGG-VGDGTTSNTE-AFRKAVRYMQGFGDKGGAQLNVPEGLWL-------TGSFNL-TSN-----FTLFLE 142 (151)
Q Consensus 78 ~~~~~nV~dFGA-~gDG~tDdT~-AfQ~AIdaa~~~~~~GGg~V~VPaGtYl-------tg~L~L-kSn-----vtL~l~ 142 (151)
.+..+-|..-|- .++|.+.++. .||+|++.+.. |.+|+|.+|+|. ...|.+ +++ ++|.-.
T Consensus 13 ~~~~~yVsp~Gsd~~~G~t~~~P~tiq~Ai~~a~p-----GdtI~l~~GtY~~~~~e~~~~~i~~~~sGt~~~pIti~~~ 87 (400)
T 1ru4_A 13 TKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNP-----GELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAA 87 (400)
T ss_dssp CSCEEEECTTCCTTCCSSSTTSCBCHHHHHHHCCT-----TCEEEECSEEEECCCBTTBCCCEEECCCCBTTBCEEEEEG
T ss_pred CccEEEEcCCCCCCCCCccccCCccHHHHHhhCCC-----CCEEEECCCeEccccccccceeEEecCCCCCCCCEEEEEe
Confidence 345566644342 2334121111 59999998754 789999999999 467777 455 888777
Q ss_pred C--CcEEE
Q 044614 143 R--GAVML 148 (151)
Q Consensus 143 ~--GAvIl 148 (151)
. .++|.
T Consensus 88 ~g~~~vI~ 95 (400)
T 1ru4_A 88 NCGRAVFD 95 (400)
T ss_dssp GGCCEEEE
T ss_pred cCCCCEEe
Confidence 5 45664
No 26
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5}
Probab=90.76 E-value=0.17 Score=44.53 Aligned_cols=46 Identities=24% Similarity=0.480 Sum_probs=38.5
Q ss_pred eeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE
Q 044614 80 VAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL 133 (151)
Q Consensus 80 ~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L 133 (151)
+++.+++|||.+|-.+||+++|.+-+.. -..|+||.|.|-+.-+.+
T Consensus 63 rvls~k~fga~~~~~~d~~~~~~~sl~s--------~~~v~i~~gvf~ss~i~~ 108 (542)
T 2x3h_A 63 RVLTSKPFGAAGDATTDDTEVIAASLNS--------QKAVTISDGVFSSSGINS 108 (542)
T ss_dssp HBCBSSCTTCCCBSSSCCHHHHHHHHTS--------SSCEECCSEEEEECCEEE
T ss_pred eeeecccccccCCcccCcHHHHHhhhcc--------cccEeccccccccccccc
Confidence 4678899999999999999999887753 445999999998776665
No 27
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp}
Probab=89.02 E-value=0.62 Score=40.07 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=34.3
Q ss_pred HHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE-CCCeEEEEcC--CcEEEc
Q 044614 99 EAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL-TSNFTLFLER--GAVMLG 149 (151)
Q Consensus 99 ~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L-kSnvtL~l~~--GAvIlg 149 (151)
.-||+||+++... ....+|+|.+|+|. ..+.+ +++++|..+. .++|.+
T Consensus 45 ~TIq~Ai~aa~~~--~~~~~I~I~~G~Y~-E~v~I~k~~itl~G~g~~~TiIt~ 95 (364)
T 3uw0_A 45 SSINAALKSAPKD--DTPFIIFLKNGVYT-ERLEVARSHVTLKGENRDGTVIGA 95 (364)
T ss_dssp CCHHHHHHHSCSS--SSCEEEEECSEEEC-CCEEECSTTEEEEESCTTTEEEEE
T ss_pred ccHHHHHhhcccC--CCcEEEEEeCCEEE-EEEEEcCCeEEEEecCCCCeEEEc
Confidence 3499999998751 23459999999997 34555 5679998875 356654
No 28
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A
Probab=87.80 E-value=0.67 Score=39.35 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=34.8
Q ss_pred HHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE-CCCeEEEEcC--CcEEEcC
Q 044614 101 FRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL-TSNFTLFLER--GAVMLGS 150 (151)
Q Consensus 101 fQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L-kSnvtL~l~~--GAvIlgS 150 (151)
||+||+++... ....+|+|.+|+|. ..+.+ +++++|..+. .++|.+.
T Consensus 21 Iq~Ai~aap~~--~~~~~I~I~~G~Y~-E~V~I~k~~Itl~G~g~~~tiI~~~ 70 (342)
T 2nsp_A 21 IADAIASAPAG--STPFVILIKNGVYN-ERLTITRNNLHLKGESRNGAVIAAA 70 (342)
T ss_dssp HHHHHHTSCSS--SSCEEEEECSEEEE-CCEEECSTTEEEEESCTTTEEEEEC
T ss_pred HHHHHHhcccC--CCcEEEEEeCCEEE-EEEEEecCeEEEEecCCCCeEEEec
Confidence 99999988651 13359999999997 45666 5679998885 4666553
No 29
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=80.08 E-value=0.57 Score=42.71 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.4
Q ss_pred cCccCCCcchhHHHHHHHHHHhH
Q 044614 87 FGGVGDGTTSNTEAFRKAVRYMQ 109 (151)
Q Consensus 87 FGA~gDG~tDdT~AfQ~AIdaa~ 109 (151)
=||+|||++|||+|+.+++....
T Consensus 4 ~~a~gdgvtddt~a~~~~l~~~~ 26 (670)
T 3ju4_A 4 GSAKGDGVTDDTAALTSALNDTP 26 (670)
T ss_dssp CCCCCEEEEECHHHHHHHHHHSC
T ss_pred CcccCCCccCcHHHHHHHhccCC
Confidence 48999999999999999998653
No 30
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12}
Probab=79.75 E-value=2.9 Score=36.91 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=31.6
Q ss_pred HHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC
Q 044614 100 AFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER 143 (151)
Q Consensus 100 AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~ 143 (151)
-||+||+++........-+|+|.+|+|.- .+.+ +.+++|..+.
T Consensus 91 TIqeAVdaap~~~~~~r~vI~Ik~GvY~E-~V~Ip~~K~~ItL~G~G 136 (422)
T 3grh_A 91 TIQAAVDAAIIKRTNKRQYIAVMPGEYQG-TVYVPAAPGGITLYGTG 136 (422)
T ss_dssp SHHHHHHHHHTTCCSSCEEEEECSEEEES-CEEECCCSSCEEEEECS
T ss_pred CHHHHHHhchhcCCCccEEEEEeCCeEee-eEEecCCCCcEEEEecc
Confidence 38999998853111345699999999983 4777 5789998863
No 31
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A
Probab=40.33 E-value=19 Score=30.08 Aligned_cols=46 Identities=26% Similarity=0.319 Sum_probs=29.7
Q ss_pred HHHHHHHHHhHcCCCCCCcEEEecCCeEEEe----------------eeEECCCeEEEEcCCcEEEc
Q 044614 99 EAFRKAVRYMQGFGDKGGAQLNVPEGLWLTG----------------SFNLTSNFTLFLERGAVMLG 149 (151)
Q Consensus 99 ~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg----------------~L~LkSnvtL~l~~GAvIlg 149 (151)
..|++|++.... .++.+|+| .|++-.. .|.+.|++||.. .+++|.|
T Consensus 24 ~~L~~al~~~~~---~~p~iI~~-~G~i~~~~~~~~c~~~~~~~~~~~l~v~sn~TI~G-~~a~i~g 85 (330)
T 2qy1_A 24 EAMQSAIDSYSG---SGGLVLNY-TGKFDFGTIKDVCAQWKLPAKTVQIKNKSDVTIKG-ANGSAAN 85 (330)
T ss_dssp HHHHHHHHHSCS---SSCEEEEE-CCBCCGGGCCCGGGSTTSCCCEEEEESCCSEEEEE-CTTCBBS
T ss_pred HHHHHHHhccCC---CCCEEEEE-ccEEecccccccccccccccceeEEEcCCCeEEEC-CCcEEee
Confidence 368888876433 45666776 8887643 566689999944 4455543
No 32
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1
Probab=38.55 E-value=70 Score=27.03 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhHcCCCCCCcEEEecCCeEEE---------------eeeEECCCeEEEEc-CCcEEEc
Q 044614 97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLT---------------GSFNLTSNFTLFLE-RGAVMLG 149 (151)
Q Consensus 97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYlt---------------g~L~LkSnvtL~l~-~GAvIlg 149 (151)
+.+.|++|+.. . ..+.+|++-.|++-. ..|.+.|++||... .+++|.|
T Consensus 32 t~~~L~~al~~--~---~~~p~VI~V~GtI~~~~~~~~~s~~~~~~~~~l~v~sn~TI~G~G~~~~i~g 95 (355)
T 1pcl_A 32 NISDFKKALNG--T---DSSAKIIKVTGPIDISGGKAYTSFDDQKARSQISIPSNTTIIGVGSNGKFTN 95 (355)
T ss_pred CHHHHHHHHhh--C---CCCcEEEEECCEEecCCccccccccccccceeEEeCCCeEEEEecCCeEEec
Confidence 44558888854 1 234567778898853 25777899999887 5688865
No 33
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*
Probab=30.70 E-value=60 Score=28.96 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=26.3
Q ss_pred CCCcE-EEecCCeEEEeeeEECCCe-EEEEcCCcEEEcC
Q 044614 114 KGGAQ-LNVPEGLWLTGSFNLTSNF-TLFLERGAVMLGS 150 (151)
Q Consensus 114 ~GGg~-V~VPaGtYltg~L~LkSnv-tL~l~~GAvIlgS 150 (151)
+++.+ |++++|.|+.+++.+.+++ .+.|....+|-|.
T Consensus 220 ~s~~~~L~l~~GA~L~gs~~~~~~~~nv~ItG~GtIDG~ 258 (549)
T 1x0c_A 220 SSSVTWVYFAPGAYVKGAVEFLSTASEVKASGHGVLSGE 258 (549)
T ss_dssp CTTCCEEEECTTEEEESCEEECCCSSEEEEESSCEEECT
T ss_pred cCCCCeEecCCCCEEEEEEEEecCceeEEEEeeEEEECC
Confidence 45677 9999999999999998632 4444433577664
No 34
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=27.82 E-value=42 Score=27.25 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=17.3
Q ss_pred HHHHHHHHHhHcCCCCCCcEEEecCC
Q 044614 99 EAFRKAVRYMQGFGDKGGAQLNVPEG 124 (151)
Q Consensus 99 ~AfQ~AIdaa~~~~~~GGg~V~VPaG 124 (151)
+.+.+.++++++ .||.+||+|.|
T Consensus 98 ~~l~~~L~~aA~---~gg~~l~vpSG 120 (253)
T 1j5p_A 98 EVFRERFFSELK---NSPARVFFPSG 120 (253)
T ss_dssp HHHHHHHHHHHH---TCSCEEECCCT
T ss_pred HHHHHHHHHHHH---HCCCeEEecCC
Confidence 445566766555 68999999998
No 35
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A
Probab=27.18 E-value=1.4e+02 Score=25.11 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=15.7
Q ss_pred eeEECCCeEEEEcC-CcEEEc
Q 044614 130 SFNLTSNFTLFLER-GAVMLG 149 (151)
Q Consensus 130 ~L~LkSnvtL~l~~-GAvIlg 149 (151)
+|.+.||.||.... +++|.|
T Consensus 103 ~l~v~snkTI~G~G~~~~i~G 123 (359)
T 1idk_A 103 GITVTSNKSLIGEGSSGAIKG 123 (359)
T ss_dssp CEEECSSEEEEECTTTCEEES
T ss_pred eEEeCCCceEEEecCCeEEec
Confidence 38889999998884 578765
No 36
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}
Probab=23.42 E-value=56 Score=28.40 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=25.7
Q ss_pred HHHHHhHcCCCCCCcEEEecCCeEEEeeeEE-----------CCCeEEEEcCCcEE
Q 044614 103 KAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL-----------TSNFTLFLERGAVM 147 (151)
Q Consensus 103 ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L-----------kSnvtL~l~~GAvI 147 (151)
.|++.+.. ++|..||||+|+=...||.+ ..++.+.+++||.+
T Consensus 141 ~Aln~A~~---~~G~fI~Vp~gv~~~~Pi~~~~~i~~~~~~~~~r~lIi~eegA~v 193 (429)
T 4dn7_A 141 TAKTYLED---ADGYFIRVPAGKKTSMPVQTCLMLGSKKAAQTVHNIIIVEEGATL 193 (429)
T ss_dssp HHHHHHTT---CBCEEEEECTTCBCSSCEEEEEEECSSSEEEEEEEEEEECTTCEE
T ss_pred HHHHHhhC---CCcEEEEECCCcEEEEEEEEEEEEcCCccceeeeEEEEECCCCEE
Confidence 45555444 67999999999654444432 12345667777643
No 37
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=22.65 E-value=87 Score=22.81 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=34.9
Q ss_pred EeeecCccCCCcchhH-HHHHHHHHH-hHcCCCCCCcEEEecCCeEEEe---eeEE--CCCeEEEEcCCc
Q 044614 83 SIKDFGGVGDGTTSNT-EAFRKAVRY-MQGFGDKGGAQLNVPEGLWLTG---SFNL--TSNFTLFLERGA 145 (151)
Q Consensus 83 nV~dFGA~gDG~tDdT-~AfQ~AIda-a~~~~~~GGg~V~VPaGtYltg---~L~L--kSnvtL~l~~GA 145 (151)
...|||.++.-....| ..|+.||.. +.. ..+|+ .|||+-. -+++ .+|+.+.++++.
T Consensus 21 Ha~DFGi~~t~~N~~t~~~fedaI~~Hi~~-----~~tv~--~GTYR~~~dskVy~N~~T~~~Viid~~g 83 (107)
T 1v74_A 21 HAGDFGISDTKKNRETLTKFRDAIEEHLSD-----KDTVE--KGTYRREKGSKVYFNPNTMNVVIIKSNG 83 (107)
T ss_dssp GGGGGTCCCCCCSHHHHHHHHHHHHHHHHC-----TTCEE--CCBCTTSTTCEEEECTTTCEEEEECTTS
T ss_pred ccccccccccccChhhHHHHHHHHHHHhcC-----CCeEe--eeeeecCCCcEEEEeCCCCeEEEEcCCC
Confidence 3569998876554444 458999964 543 23333 6888743 2444 677777777643
No 38
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=20.90 E-value=68 Score=27.77 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHhHcCCCCCCcEEEecCCe-EEE
Q 044614 96 SNTEAFRKAVRYMQGFGDKGGAQLNVPEGL-WLT 128 (151)
Q Consensus 96 DdT~AfQ~AIdaa~~~~~~GGg~V~VPaGt-Ylt 128 (151)
.+.++++++.+.+++ .|...+++|+|| ...
T Consensus 207 ~n~ksl~~~~~~Lk~---GG~sI~IFPEGTRsR~ 237 (367)
T 1iuq_A 207 ANTRSLKEMALLLRG---GSQLIWIAPSGGRDRP 237 (367)
T ss_dssp HHHHHHHHHHHHHHH---CCCEEEECTTCSCCCB
T ss_pred HHHHHHHHHHHHHHc---CCeEEEEeCCCCCCCC
Confidence 467778888888876 233788899995 453
Done!