BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044615
(571 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 154/323 (47%), Gaps = 22/323 (6%)
Query: 85 LYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANL 144
L IP E+ +K+L L L N L G IP L N TNL + LS N+L+G IP L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 145 TSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSL--------ANLTNSL 196
+L+IL L NS +IP E+G+ SL LDL++N NG+IP ++ AN
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 197 KVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHK 256
+ +Y+ ++ + E HG + L E G S +L L ++++ +
Sbjct: 571 RYVYIKNDGMKKEC---HGAGNLL--------EFQGIRSEQLNRLSTRNPCNITSRVYGG 619
Query: 257 SIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSL 316
+ N + +L++S N S IP +I + +L L+L HN IP ++ ++ L
Sbjct: 620 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 679
Query: 317 EKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRLCG 376
L+LS N L G IP+ + L+ ID+S N L G IP F P N LCG
Sbjct: 680 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739
Query: 377 -DIKRLPPCKA--FKSHKQSMKK 396
+ R P A + H++S +
Sbjct: 740 YPLPRCDPSNADGYAHHQRSHGR 762
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 152/294 (51%), Gaps = 12/294 (4%)
Query: 78 FTGQDWPLYSSIPDEI-GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGS 136
FTG+ IPD + G +L+ L LS N G++P G+ + L L LS+N SG
Sbjct: 278 FTGE-------IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 137 IPL-SFANLTSLSILYLYENSLCDSIPKEIGNMN-SLSILDLSSNKLNGSI-PLSLANLT 193
+P+ + + L +L L N +P+ + N++ SL LDLSSN +G I P N
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 194 NSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANT 253
N+L+ LYL +N G+IP S L+ L L+ N LSG + LGSL +L L L N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 254 FHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSM 313
IP+ L + L L L N + +IP+ + +L+ + LS+N EIP I +
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 314 QSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLA 367
++L L LS+N+ SG+IP + L +D++ N G IP + F+ + +A
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP-AAMFKQSGKIA 563
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 136/307 (44%), Gaps = 31/307 (10%)
Query: 102 LQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSI 161
L +S N + IP LG+ + L LD+S NKLSG + + T L +L + N I
Sbjct: 202 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Query: 162 PKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLI 221
P + SL L L+ NK G IP L+ ++L L LS NH G +P G S L
Sbjct: 261 PPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 222 QLTLNNNELSGQLSPE-LGSLIQLEYLDLSANTFHKSIPESLSNLVK------------- 267
L L++N SG+L + L + L+ LDLS N F +PESL+NL
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 268 --------------LHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSM 313
L L L NN F+ KIP + L L LS N IPS + S+
Sbjct: 379 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 314 QSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKR 373
L L L N L G IP+ + L + + +N L G IP+ + N R
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 374 LCGDIKR 380
L G+I +
Sbjct: 499 LTGEIPK 505
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 118/234 (50%), Gaps = 12/234 (5%)
Query: 128 LSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPK--EIGNMNSLSILDLSSNKLNGSI 185
LS + ++GS+ F SL+ L L NSL + +G+ + L L++SSN L+
Sbjct: 81 LSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 186 PLSLANLTNSLKVLYLSSNHIVGEIPLGHGM---LSSLIQLTLNNNELSGQLSPELGSLI 242
+S NSL+VL LS+N I G +G + L L ++ N++SG + ++ +
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV 197
Query: 243 QLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIF 302
LE+LD+S+N F IP L + L +L++S N+ S I L L++S N F
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 303 REEIPSQICSMQSLEKLNLSHNNLSGSIPRCFE-EMHWLSCIDISYNALQGLIP 355
IP ++SL+ L+L+ N +G IP L+ +D+S N G +P
Sbjct: 257 VGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 147/308 (47%), Gaps = 21/308 (6%)
Query: 85 LYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANL 144
L IP E+ +K+L L L N L G IP L N TNL + LS N+L+G IP L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 145 TSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSL--------ANLTNSL 196
+L+IL L NS +IP E+G+ SL LDL++N NG+IP ++ AN
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 197 KVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHK 256
+ +Y+ ++ + E HG + L E G S +L L ++++ +
Sbjct: 574 RYVYIKNDGMKKEC---HGAGNLL--------EFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 257 SIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSL 316
+ N + +L++S N S IP +I + +L L+L HN IP ++ ++ L
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682
Query: 317 EKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRLCG 376
L+LS N L G IP+ + L+ ID+S N L G IP F P N LCG
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Query: 377 DIKRLPPC 384
LP C
Sbjct: 743 --YPLPRC 748
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 152/294 (51%), Gaps = 12/294 (4%)
Query: 78 FTGQDWPLYSSIPDEI-GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGS 136
FTG+ IPD + G +L+ L LS N G++P G+ + L L LS+N SG
Sbjct: 281 FTGE-------IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 137 IPL-SFANLTSLSILYLYENSLCDSIPKEIGNMN-SLSILDLSSNKLNGSI-PLSLANLT 193
+P+ + + L +L L N +P+ + N++ SL LDLSSN +G I P N
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 194 NSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANT 253
N+L+ LYL +N G+IP S L+ L L+ N LSG + LGSL +L L L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 254 FHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSM 313
IP+ L + L L L N + +IP+ + +L+ + LS+N EIP I +
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 314 QSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLA 367
++L L LS+N+ SG+IP + L +D++ N G IP + F+ + +A
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP-AAMFKQSGKIA 566
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 136/307 (44%), Gaps = 31/307 (10%)
Query: 102 LQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSI 161
L +S N + IP LG+ + L LD+S NKLSG + + T L +L + N I
Sbjct: 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Query: 162 PKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLI 221
P + SL L L+ NK G IP L+ ++L L LS NH G +P G S L
Sbjct: 264 PPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 222 QLTLNNNELSGQLSPE-LGSLIQLEYLDLSANTFHKSIPESLSNLVK------------- 267
L L++N SG+L + L + L+ LDLS N F +PESL+NL
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 268 --------------LHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSM 313
L L L NN F+ KIP + L L LS N IPS + S+
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 314 QSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKR 373
L L L N L G IP+ + L + + +N L G IP+ + N R
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 374 LCGDIKR 380
L G+I +
Sbjct: 502 LTGEIPK 508
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 118/234 (50%), Gaps = 12/234 (5%)
Query: 128 LSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPK--EIGNMNSLSILDLSSNKLNGSI 185
LS + ++GS+ F SL+ L L NSL + +G+ + L L++SSN L+
Sbjct: 84 LSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 186 PLSLANLTNSLKVLYLSSNHIVGEIPLGHGM---LSSLIQLTLNNNELSGQLSPELGSLI 242
+S NSL+VL LS+N I G +G + L L ++ N++SG + ++ +
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV 200
Query: 243 QLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIF 302
LE+LD+S+N F IP L + L +L++S N+ S I L L++S N F
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 303 REEIPSQICSMQSLEKLNLSHNNLSGSIPRCFE-EMHWLSCIDISYNALQGLIP 355
IP ++SL+ L+L+ N +G IP L+ +D+S N G +P
Sbjct: 260 VGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 140/274 (51%), Gaps = 31/274 (11%)
Query: 113 IPLALGNLTNLVVLDLS-TNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSL 171
IP +L NL L L + N L G IP + A LT L LY+ ++ +IP + + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 172 SILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLI-QLTLNNNEL 230
LD S N L+G++P S+++L N + + + N I G IP +G S L +T++ N L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITF-DGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 231 SGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLI 290
+G++ P +L L ++DLS N E ++++ +++ +QKI
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNML-----EGDASVL------FGSDKNTQKI-------- 226
Query: 291 HLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNAL 350
HL++ L+ ++ ++ ++L L+L +N + G++P+ ++ +L +++S+N L
Sbjct: 227 HLAKNSLAFDL------GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 351 QGLIPNSTAFRDAPMLALQGNKRLCGDIKRLPPC 384
G IP + + A NK LCG LP C
Sbjct: 281 CGEIPQGGNLQRFDVSAYANNKCLCG--SPLPAC 312
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 120/268 (44%), Gaps = 27/268 (10%)
Query: 66 TFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSE-NILNGSIPLALGNLTNLV 124
T T + L +G + P IP + N+ L+ L + N L G IP A+ LT L
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 125 VLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGS 184
L ++ +SG+IP + + +L L N+L ++P I ++ +L + N+++G+
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 185 IPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQL 244
IP S + + + +S N + G+IP L +L + L+ N L G S GS
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 245 EYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFRE 304
+ + L+ N+ L + LS N L+ LDL +N
Sbjct: 224 QKIHLAKNSLA----------FDLGKVGLSKN---------------LNGLDLRNNRIYG 258
Query: 305 EIPSQICSMQSLEKLNLSHNNLSGSIPR 332
+P + ++ L LN+S NNL G IP+
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 243 QLEYLDLSANTFHKS--IPESLSNLVKLHYLNLSN-NQFSQKIPNKIEKLIHLSELDLSH 299
++ LDLS K IP SL+NL L++L + N IP I KL L L ++H
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 300 NIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNS 357
IP + +++L L+ S+N LSG++P + L I N + G IP+S
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 124/239 (51%), Gaps = 19/239 (7%)
Query: 93 IGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYL 152
+ N+ +L+ L L N + PL NLTNL L+LS+N +S LS LTSL L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALS--GLTSLQQLSF 158
Query: 153 YENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPL 212
N + D P + N+ +L LD+SSNK+ I + LA LTN L+ L ++N I PL
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKV-SDISV-LAKLTN-LESLIATNNQISDITPL 213
Query: 213 GHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLN 272
G+L++L +L+LN N+L L SL L LDL+ N P LS L KL L
Sbjct: 214 --GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 267
Query: 273 LSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIP 331
L NQ S P + L L+ L+L+ N + P I ++++L L L NN+S P
Sbjct: 268 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 115/238 (48%), Gaps = 23/238 (9%)
Query: 96 MKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYEN 155
+ SL L S N + PLA NLT L LD+S+NK+S L A LT+L L N
Sbjct: 150 LTSLQQLSFSSNQVTDLKPLA--NLTTLERLDISSNKVSDISVL--AKLTNLESLIATNN 205
Query: 156 SLCDSIPKEIGNMNSLSILDLSSNKLN--GSIPLSLANLTNSLKVLYLSSNHIVGEIPLG 213
+ D P +G + +L L L+ N+L G++ SL NLT+ L L++N I PL
Sbjct: 206 QISDITP--LGILTNLDELSLNGNQLKDIGTLA-SLTNLTD----LDLANNQISNLAPLS 258
Query: 214 HGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNL 273
L+ L +L L N++S +SP L L L L+L+ N P +SNL L YL L
Sbjct: 259 G--LTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 312
Query: 274 SNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIP 331
N S P + L L L +N + S + ++ ++ L+ HN +S P
Sbjct: 313 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 22/183 (12%)
Query: 116 ALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILD 175
L +LTNL LDL+ N++S PLS LT L+ L L N + + P + + +L+ L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 176 LSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLS 235
L+ N+L P+S NL N L L L N+I P+ L+ L +L NN++S S
Sbjct: 290 LNENQLEDISPIS--NLKN-LTYLTLYFNNISDISPVSS--LTKLQRLFFYNNKVSDVSS 344
Query: 236 PELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQ---------KIPNKI 286
L +L + +L N P L+NL ++ L L++ ++ IPN +
Sbjct: 345 --LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 400
Query: 287 EKL 289
+ +
Sbjct: 401 KNV 403
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 124/239 (51%), Gaps = 19/239 (7%)
Query: 93 IGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYL 152
+ N+ +L+ L L N + PL NLTNL L+LS+N +S LS LTSL L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALS--GLTSLQQLSF 158
Query: 153 YENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPL 212
N + D P + N+ +L LD+SSNK+ I + LA LTN L+ L ++N I PL
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKV-SDISV-LAKLTN-LESLIATNNQISDITPL 213
Query: 213 GHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLN 272
G+L++L +L+LN N+L L SL L LDL+ N P LS L KL L
Sbjct: 214 --GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 267
Query: 273 LSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIP 331
L NQ S P + L L+ L+L+ N + P I ++++L L L NN+S P
Sbjct: 268 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 117/239 (48%), Gaps = 25/239 (10%)
Query: 96 MKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSG-SIPLSFANLTSLSILYLYE 154
+ SL L S N + PLA NLT L LD+S+NK+S S+ A LT+L L
Sbjct: 150 LTSLQQLSFSSNQVTDLKPLA--NLTTLERLDISSNKVSDISV---LAKLTNLESLIATN 204
Query: 155 NSLCDSIPKEIGNMNSLSILDLSSNKLN--GSIPLSLANLTNSLKVLYLSSNHIVGEIPL 212
N + D P +G + +L L L+ N+L G++ SL NLT+ L L++N I PL
Sbjct: 205 NQISDITP--LGILTNLDELSLNGNQLKDIGTLA-SLTNLTD----LDLANNQISNLAPL 257
Query: 213 GHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLN 272
L+ L +L L N++S +SP L L L L+L+ N P +SNL L YL
Sbjct: 258 SG--LTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 311
Query: 273 LSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIP 331
L N S P + L L L S+N + S + ++ ++ L+ HN +S P
Sbjct: 312 LYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 22/183 (12%)
Query: 116 ALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILD 175
L +LTNL LDL+ N++S PLS LT L+ L L N + + P + + +L+ L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 176 LSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLS 235
L+ N+L P+S NL N L L L N+I P+ L+ L +L +NN++S S
Sbjct: 290 LNENQLEDISPIS--NLKN-LTYLTLYFNNISDISPVSS--LTKLQRLFFSNNKVSDVSS 344
Query: 236 PELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQ---------KIPNKI 286
L +L + +L N P L+NL ++ L L++ ++ IPN +
Sbjct: 345 --LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 400
Query: 287 EKL 289
+ +
Sbjct: 401 KNV 403
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 124/239 (51%), Gaps = 19/239 (7%)
Query: 93 IGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYL 152
+ N+ +L+ L L N + PL NLTNL L+LS+N +S LS LTSL L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALS--GLTSLQQLNF 158
Query: 153 YENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPL 212
N + D P + N+ +L LD+SSNK+ I + LA LTN L+ L ++N I PL
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKV-SDISV-LAKLTN-LESLIATNNQISDITPL 213
Query: 213 GHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLN 272
G+L++L +L+LN N+L L SL L LDL+ N P LS L KL L
Sbjct: 214 --GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 267
Query: 273 LSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIP 331
L NQ S P + L L+ L+L+ N + P I ++++L L L NN+S P
Sbjct: 268 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 115/238 (48%), Gaps = 23/238 (9%)
Query: 96 MKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYEN 155
+ SL L S N + PLA NLT L LD+S+NK+S L A LT+L L N
Sbjct: 150 LTSLQQLNFSSNQVTDLKPLA--NLTTLERLDISSNKVSDISVL--AKLTNLESLIATNN 205
Query: 156 SLCDSIPKEIGNMNSLSILDLSSNKLN--GSIPLSLANLTNSLKVLYLSSNHIVGEIPLG 213
+ D P +G + +L L L+ N+L G++ SL NLT+ L L++N I PL
Sbjct: 206 QISDITP--LGILTNLDELSLNGNQLKDIGTLA-SLTNLTD----LDLANNQISNLAPLS 258
Query: 214 HGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNL 273
L+ L +L L N++S +SP L L L L+L+ N P +SNL L YL L
Sbjct: 259 G--LTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 312
Query: 274 SNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIP 331
N S P + L L L +N + S + ++ ++ L+ HN +S P
Sbjct: 313 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 22/183 (12%)
Query: 116 ALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILD 175
L +LTNL LDL+ N++S PLS LT L+ L L N + + P + + +L+ L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 176 LSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLS 235
L+ N+L P+S NL N L L L N+I P+ L+ L +L NN++S S
Sbjct: 290 LNENQLEDISPIS--NLKN-LTYLTLYFNNISDISPVSS--LTKLQRLFFYNNKVSDVSS 344
Query: 236 PELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQ---------KIPNKI 286
L +L + +L N P L+NL ++ L L++ ++ IPN +
Sbjct: 345 --LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 400
Query: 287 EKL 289
+ +
Sbjct: 401 KNV 403
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 127/256 (49%), Gaps = 36/256 (14%)
Query: 95 NMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYE 154
N+ L D+ ++ N + PLA NLTNL L L N+++ PL NLT+L+ L L
Sbjct: 87 NLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSS 142
Query: 155 NSLCD-------------------SIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNS 195
N++ D + K + N+ +L LD+SSNK+ I + LA LTN
Sbjct: 143 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV-SDISV-LAKLTN- 199
Query: 196 LKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFH 255
L+ L ++N I PL G+L++L +L+LN N+L L SL L LDL+ N
Sbjct: 200 LESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 255
Query: 256 KSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQS 315
P LS L KL L L NQ S P + L L+ L+L+ N + P I ++++
Sbjct: 256 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN 309
Query: 316 LEKLNLSHNNLSGSIP 331
L L L NN+S P
Sbjct: 310 LTYLTLYFNNISDISP 325
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 108/218 (49%), Gaps = 23/218 (10%)
Query: 117 LGNLTNLVVLDLSTNKLSG-SIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILD 175
L NLT L LD+S+NK+S S+ A LT+L L N + D P +G + +L L
Sbjct: 172 LANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITP--LGILTNLDELS 226
Query: 176 LSSNKLN--GSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQ 233
L+ N+L G++ SL NLT+ L L++N I PL L+ L +L L N++S
Sbjct: 227 LNGNQLKDIGTLA-SLTNLTD----LDLANNQISNLAPLSG--LTKLTELKLGANQIS-N 278
Query: 234 LSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLS 293
+SP L L L L+L+ N P +SNL L YL L N S P + L L
Sbjct: 279 ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 333
Query: 294 ELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIP 331
L ++N + S + ++ ++ L+ HN +S P
Sbjct: 334 RLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP 369
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 22/183 (12%)
Query: 116 ALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILD 175
L +LTNL LDL+ N++S PLS LT L+ L L N + + P + + +L+ L+
Sbjct: 237 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 292
Query: 176 LSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLS 235
L+ N+L P+S NL N L L L N+I P+ L+ L +L NN++S S
Sbjct: 293 LNENQLEDISPIS--NLKN-LTYLTLYFNNISDISPVSS--LTKLQRLFFANNKVSDVSS 347
Query: 236 PELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQ---------KIPNKI 286
L +L + +L N P L+NL ++ L L++ ++ IPN +
Sbjct: 348 --LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 403
Query: 287 EKL 289
+ +
Sbjct: 404 KNV 406
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 127/256 (49%), Gaps = 36/256 (14%)
Query: 95 NMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYE 154
N+ L D+ ++ N + PLA NLTNL L L N+++ PL NLT+L+ L L
Sbjct: 88 NLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSS 143
Query: 155 NSLCD-------------------SIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNS 195
N++ D + K + N+ +L LD+SSNK+ I + LA LTN
Sbjct: 144 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV-SDISV-LAKLTN- 200
Query: 196 LKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFH 255
L+ L ++N I PL G+L++L +L+LN N+L L SL L LDL+ N
Sbjct: 201 LESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 256
Query: 256 KSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQS 315
P LS L KL L L NQ S P + L L+ L+L+ N + P I ++++
Sbjct: 257 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN 310
Query: 316 LEKLNLSHNNLSGSIP 331
L L L NN+S P
Sbjct: 311 LTYLTLYFNNISDISP 326
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 106/217 (48%), Gaps = 21/217 (9%)
Query: 117 LGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDL 176
L NLT L LD+S+NK+S L A LT+L L N + D P +G + +L L L
Sbjct: 173 LANLTTLERLDISSNKVSDISVL--AKLTNLESLIATNNQISDITP--LGILTNLDELSL 228
Query: 177 SSNKLN--GSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQL 234
+ N+L G++ SL NLT+ L L++N I PL L+ L +L L N++S +
Sbjct: 229 NGNQLKDIGTLA-SLTNLTD----LDLANNQISNLAPLSG--LTKLTELKLGANQIS-NI 280
Query: 235 SPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSE 294
SP L L L L+L+ N P +SNL L YL L N S P + L L
Sbjct: 281 SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335
Query: 295 LDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIP 331
L +N + S + ++ ++ L+ HN +S P
Sbjct: 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 22/183 (12%)
Query: 116 ALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILD 175
L +LTNL LDL+ N++S PLS LT L+ L L N + + P + + +L+ L+
Sbjct: 238 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 293
Query: 176 LSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLS 235
L+ N+L P+S NL N L L L N+I P+ L+ L +L NN++S S
Sbjct: 294 LNENQLEDISPIS--NLKN-LTYLTLYFNNISDISPVSS--LTKLQRLFFYNNKVSDVSS 348
Query: 236 PELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQ---------KIPNKI 286
L +L + +L N P L+NL ++ L L++ ++ IPN +
Sbjct: 349 --LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404
Query: 287 EKL 289
+ +
Sbjct: 405 KNV 407
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 127/256 (49%), Gaps = 36/256 (14%)
Query: 95 NMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYE 154
N+ L D+ ++ N + PLA NLTNL L L N+++ PL NLT+L+ L L
Sbjct: 83 NLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSS 138
Query: 155 NSLCD-------------------SIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNS 195
N++ D + K + N+ +L LD+SSNK+ I + LA LTN
Sbjct: 139 NTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKV-SDISV-LAKLTN- 195
Query: 196 LKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFH 255
L+ L ++N I PL G+L++L +L+LN N+L L SL L LDL+ N
Sbjct: 196 LESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 251
Query: 256 KSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQS 315
P LS L KL L L NQ S P + L L+ L+L+ N + P I ++++
Sbjct: 252 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN 305
Query: 316 LEKLNLSHNNLSGSIP 331
L L L NN+S P
Sbjct: 306 LTYLTLYFNNISDISP 321
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 106/217 (48%), Gaps = 21/217 (9%)
Query: 117 LGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDL 176
L NLT L LD+S+NK+S L A LT+L L N + D P +G + +L L L
Sbjct: 168 LANLTTLERLDISSNKVSDISVL--AKLTNLESLIATNNQISDITP--LGILTNLDELSL 223
Query: 177 SSNKLN--GSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQL 234
+ N+L G++ SL NLT+ L L++N I PL L+ L +L L N++S +
Sbjct: 224 NGNQLKDIGTLA-SLTNLTD----LDLANNQISNLAPLSG--LTKLTELKLGANQISN-I 275
Query: 235 SPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSE 294
SP L L L L+L+ N P +SNL L YL L N S P + L L
Sbjct: 276 SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 330
Query: 295 LDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIP 331
L +N + S + ++ ++ L+ HN +S P
Sbjct: 331 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 365
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 22/183 (12%)
Query: 116 ALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILD 175
L +LTNL LDL+ N++S PLS LT L+ L L N + + P + + +L+ L+
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 176 LSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLS 235
L+ N+L P+S NL N L L L N+I P+ L+ L +L NN++S S
Sbjct: 289 LNENQLEDISPIS--NLKN-LTYLTLYFNNISDISPVSS--LTKLQRLFFYNNKVSDVSS 343
Query: 236 PELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQ---------KIPNKI 286
L +L + +L N P L+NL ++ L L++ ++ IPN +
Sbjct: 344 --LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 399
Query: 287 EKL 289
+ +
Sbjct: 400 KNV 402
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 127/256 (49%), Gaps = 36/256 (14%)
Query: 95 NMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYE 154
N+ L D+ ++ N + PLA NLTNL L L N+++ PL NLT+L+ L L
Sbjct: 83 NLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSS 138
Query: 155 NSLCD-------------------SIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNS 195
N++ D + K + N+ +L LD+SSNK+ I + LA LTN
Sbjct: 139 NTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKV-SDISV-LAKLTN- 195
Query: 196 LKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFH 255
L+ L ++N I PL G+L++L +L+LN N+L L SL L LDL+ N
Sbjct: 196 LESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 251
Query: 256 KSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQS 315
P LS L KL L L NQ S P + L L+ L+L+ N + P I ++++
Sbjct: 252 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN 305
Query: 316 LEKLNLSHNNLSGSIP 331
L L L NN+S P
Sbjct: 306 LTYLTLYFNNISDISP 321
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 107/217 (49%), Gaps = 21/217 (9%)
Query: 117 LGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDL 176
L NLT L LD+S+NK+S L A LT+L L N + D P +G + +L L L
Sbjct: 168 LANLTTLERLDISSNKVSDISVL--AKLTNLESLIATNNQISDITP--LGILTNLDELSL 223
Query: 177 SSNKLN--GSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQL 234
+ N+L G++ SL NLT+ L L++N I PL L+ L +L L N++S +
Sbjct: 224 NGNQLKDIGTLA-SLTNLTD----LDLANNQISNLAPLSG--LTKLTELKLGANQISN-I 275
Query: 235 SPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSE 294
SP L L L L+L+ N P +SNL L YL L N S P + L L
Sbjct: 276 SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 330
Query: 295 LDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIP 331
L S+N + S + ++ ++ L+ HN +S P
Sbjct: 331 LFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 365
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 22/183 (12%)
Query: 116 ALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILD 175
L +LTNL LDL+ N++S PLS LT L+ L L N + + P + + +L+ L+
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 176 LSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLS 235
L+ N+L P+S NL N L L L N+I P+ L+ L +L +NN++S S
Sbjct: 289 LNENQLEDISPIS--NLKN-LTYLTLYFNNISDISPVSS--LTKLQRLFFSNNKVSDVSS 343
Query: 236 PELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQ---------KIPNKI 286
L +L + +L N P L+NL ++ L L++ ++ IPN +
Sbjct: 344 --LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 399
Query: 287 EKL 289
+ +
Sbjct: 400 KNV 402
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 456 EIIRATNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNAL 515
E+ A++NF + + +G GG G VYK +L G +V VK+ + +F EV +
Sbjct: 24 ELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERT--QGGELQFQTEVEMI 81
Query: 516 TKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAE-QFCWTKRMN 568
+ HRN+++ GFC +VY Y+ GS+A L ++ W KR
Sbjct: 82 SMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQR 135
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 456 EIIRATNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNAL 515
E+ A++NF + + +G GG G VYK +L G +V VK+ + +F EV +
Sbjct: 32 ELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEER--XQGGELQFQTEVEMI 89
Query: 516 TKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAE-QFCWTKRMN 568
+ HRN+++ GFC +VY Y+ GS+A L ++ W KR
Sbjct: 90 SMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQR 143
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 108/242 (44%), Gaps = 16/242 (6%)
Query: 111 GSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMN- 169
SIP+ N L+L N + +F +L L IL L +N L I E+G N
Sbjct: 31 ASIPV------NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKN-LVRKI--EVGAFNG 81
Query: 170 --SLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNN 227
SL+ L+L N+L ++P + L+ L+L +N I + SL +L L
Sbjct: 82 LPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
Query: 228 -NELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKI 286
L L+ L YL+L K IP +L+ LV+L L LS N+ P
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIP-NLTALVRLEELELSGNRLDLIRPGSF 198
Query: 287 EKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDIS 346
+ L L +L L H + ++SLE+LNLSHNNL F +H L + ++
Sbjct: 199 QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLN 258
Query: 347 YN 348
+N
Sbjct: 259 HN 260
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 108/252 (42%), Gaps = 33/252 (13%)
Query: 91 DEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSIL 150
D +++ L LQLS+N++ A L +L L+L N+L+ +F L+ L L
Sbjct: 53 DTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLREL 112
Query: 151 YLYENSLCDSIPKEIGN-MNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGE 209
+L N + +SIP N + SL LDL K ++ Y+S G
Sbjct: 113 WLRNNPI-ESIPSYAFNRVPSLRRLDLGELK----------------RLEYISEAAFEGL 155
Query: 210 IPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLH 269
+ L + LN + + P L +L++LE L+LS N P S L L
Sbjct: 156 VNLRY----------LNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
Query: 270 YLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGS 329
L L + Q + N + L L EL+LSHN + LE+++L+HN
Sbjct: 206 KLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW--- 262
Query: 330 IPRCFEEMHWLS 341
C ++ WLS
Sbjct: 263 --HCNCDVLWLS 272
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 258 IPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLE 317
+P S+ V YLNL N + + L HL L LS N+ R+ + SL
Sbjct: 29 VPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLN 86
Query: 318 KLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRL-CG 376
L L N L+ + FE + L + + N ++ IP S AF P L +RL G
Sbjct: 87 TLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IP-SYAFNRVPSL-----RRLDLG 139
Query: 377 DIKRL 381
++KRL
Sbjct: 140 ELKRL 144
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 83/196 (42%), Gaps = 36/196 (18%)
Query: 42 KELVRAVQARD----TSISFDELHEKLLTFEATAHFSVLAFTGQDW---------PLYS- 87
K LVR ++ S++ EL + LT T F L+ + W P Y+
Sbjct: 68 KNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAF 127
Query: 88 -SIPD----EIGNMKSLSDLQLSENILNGSIPLA-----------LGNLTNLVVLD---L 128
+P ++G +K L +SE G + L + NLT LV L+ L
Sbjct: 128 NRVPSLRRLDLGELKRLE--YISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELEL 185
Query: 129 STNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLS 188
S N+L P SF LTSL L+L + ++ SL L+LS N L S+P
Sbjct: 186 SGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL-MSLPHD 244
Query: 189 LANLTNSLKVLYLSSN 204
L + L+ ++L+ N
Sbjct: 245 LFTPLHRLERVHLNHN 260
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 84/182 (46%), Gaps = 11/182 (6%)
Query: 126 LDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIP----KEIGNMNSLSILDLSSNKL 181
LDL +NKLS +F LT L +LYL +N L ++P KE+ N+ +L + D NKL
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTD---NKL 97
Query: 182 NGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSL 241
++P+ + + +L L L N + P L+ L L+L NEL L
Sbjct: 98 Q-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 242 IQLEYLDLSANTFHKSIPE-SLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHN 300
L+ L L N K +PE + L +L L L NNQ + + L L L L N
Sbjct: 157 TSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Query: 301 IF 302
+
Sbjct: 216 PW 217
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 5/177 (2%)
Query: 174 LDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLG-HGMLSSLIQLTLNNNELSG 232
LDL SNKL+ S+P + L++LYL+ N + +P G L +L L + +N+L
Sbjct: 42 LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 233 QLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKI-EKLIH 291
L+ L L L N P +L KL YL+L N+ Q +P + +KL
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTS 158
Query: 292 LSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYN 348
L EL L +N + + L+ L L +N L F+ + L + + N
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 85/209 (40%), Gaps = 7/209 (3%)
Query: 169 NSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNN 228
N+ + +D SS KL +IP +N+ K L L SN + L+ L L LN+N
Sbjct: 16 NNKNSVDCSSKKLT-AIP---SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71
Query: 229 ELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEK 288
+L + L LE L ++ N LV L L L NQ P +
Sbjct: 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131
Query: 289 LIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYN 348
L L+ L L +N + + SL++L L +N L F+++ L + + N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 349 ALQGLIPNST--AFRDAPMLALQGNKRLC 375
L+ +P + ML LQ N C
Sbjct: 192 QLKR-VPEGAFDSLEKLKMLQLQENPWDC 219
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 98 SLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSL 157
+L++L+L N L P +LT L L L N+L F LTSL L LY N L
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 158 CDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSN 204
+ L L L +N+L +P + LK+L L N
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 108/242 (44%), Gaps = 16/242 (6%)
Query: 111 GSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMN- 169
SIP+ N L+L N + +F +L L IL L +N L I E+G N
Sbjct: 31 ASIPV------NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKN-LVRKI--EVGAFNG 81
Query: 170 --SLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNN 227
SL+ L+L N+L ++P + L+ L+L +N I + SL +L L
Sbjct: 82 LPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
Query: 228 -NELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKI 286
L L+ L YL+L K IP +L+ LV+L L LS N+ P
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIP-NLTALVRLEELELSGNRLDLIRPGSF 198
Query: 287 EKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDIS 346
+ L L +L L H + ++SLE+LNLSHNNL F +H L + ++
Sbjct: 199 QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLN 258
Query: 347 YN 348
+N
Sbjct: 259 HN 260
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 108/252 (42%), Gaps = 33/252 (13%)
Query: 91 DEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSIL 150
D +++ L LQLS+N++ A L +L L+L N+L+ +F L+ L L
Sbjct: 53 DTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLREL 112
Query: 151 YLYENSLCDSIPKEIGN-MNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGE 209
+L N + +SIP N + SL LDL K ++ Y+S G
Sbjct: 113 WLRNNPI-ESIPSYAFNRVPSLRRLDLGELK----------------RLEYISEAAFEGL 155
Query: 210 IPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLH 269
+ L + LN + + P L +L++LE L+LS N P S L L
Sbjct: 156 VNLRY----------LNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
Query: 270 YLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGS 329
L L + Q + N + L L EL+LSHN + LE+++L+HN
Sbjct: 206 KLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW--- 262
Query: 330 IPRCFEEMHWLS 341
C ++ WLS
Sbjct: 263 --HCNCDVLWLS 272
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 258 IPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLE 317
+P S+ V YLNL N + + L HL L LS N+ R+ + SL
Sbjct: 29 VPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLN 86
Query: 318 KLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRL-CG 376
L L N L+ + FE + L + + N ++ IP S AF P L +RL G
Sbjct: 87 TLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IP-SYAFNRVPSL-----RRLDLG 139
Query: 377 DIKRL 381
++KRL
Sbjct: 140 ELKRL 144
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 10/232 (4%)
Query: 121 TNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLS---ILDLS 177
TN +L+L N++ SF +L L IL L N + +I EIG N L+ L+L
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTI--EIGAFNGLANLNTLELF 120
Query: 178 SNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNN-NELSGQLSP 236
N+L +IP + LK L+L +N I + SL +L L LS
Sbjct: 121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179
Query: 237 ELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELD 296
L L YL+L+ + IP +L+ L+KL L+LS N S P + L+HL +L
Sbjct: 180 AFEGLSNLRYLNLAMCNL-REIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237
Query: 297 LSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYN 348
+ + + + ++QSL ++NL+HNNL+ F +H L I + +N
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 104/247 (42%), Gaps = 33/247 (13%)
Query: 96 MKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYEN 155
++ L LQLS N + A L NL L+L N+L+ +F L+ L L+L N
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146
Query: 156 SLCDSIPKEIGN-MNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGH 214
+ +SIP N + SL LDL K ++ Y+S G
Sbjct: 147 PI-ESIPSYAFNRIPSLRRLDLGELK----------------RLSYISEGAFEG------ 183
Query: 215 GMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLS 274
LS+L L L L + P L LI+L+ LDLS N P S L+ L L +
Sbjct: 184 --LSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239
Query: 275 NNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCF 334
+Q N + L L E++L+HN + LE+++L HN + C
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN-----CN 294
Query: 335 EEMHWLS 341
++ WLS
Sbjct: 295 CDILWLS 301
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 125/272 (45%), Gaps = 19/272 (6%)
Query: 91 DEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLS-FANLTSLSI 149
DE + L +L+L+ENI++ P A NL NL L L +N+L IPL F L++L+
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTK 108
Query: 150 LYLYENS---LCDSIPKEIGNMNSLSILD-----LSSNKLNGSIPLSLANLTNSLKVLYL 201
L + EN L D + +++ N+ SL + D +S +G NSL+ L L
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG---------LNSLEQLTL 159
Query: 202 SSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPES 261
++ L LI L L + ++ L +L+ L++S + ++ +
Sbjct: 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219
Query: 262 LSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNL 321
+ L L++++ + + L++L L+LS+N S + + L+++ L
Sbjct: 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279
Query: 322 SHNNLSGSIPRCFEEMHWLSCIDISYNALQGL 353
L+ P F +++L +++S N L L
Sbjct: 280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 102/231 (44%), Gaps = 3/231 (1%)
Query: 121 TNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNK 180
T +LDL N++ FA+ L L L EN + P N+ +L L L SN+
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 181 LNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGS 240
L IPL + ++L L +S N IV + L +L L + +N+L
Sbjct: 92 LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 241 LIQLEYLDLSANTFHKSIP-ESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSH 299
L LE L L SIP E+LS+L L L L + + ++L L L++SH
Sbjct: 151 LNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Query: 300 NIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNAL 350
+ + + +L L+++H NL+ + +L +++SYN +
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 257 SIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSL 316
++PE + +L L+L N+ ++ HL EL+L+ NI P ++ +L
Sbjct: 25 AVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 317 EKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNAL 350
L L N L F + L+ +DIS N +
Sbjct: 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR 519
ATNNFD IG+G G VYK L G V +K+ P+ +EF E+ L+ R
Sbjct: 37 ATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR---RTPESSQGIEEFETEIETLSFCR 93
Query: 520 HRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNL-SNDAAAEQFCWTKRM 567
H ++V GFC ++Y+Y+E G+L +L +D W +R+
Sbjct: 94 HPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRL 142
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR 519
ATNNFD IG+G G VYK L G V +K+ P+ +EF E+ L+ R
Sbjct: 37 ATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR---RTPESSQGIEEFETEIETLSFCR 93
Query: 520 HRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNL-SNDAAAEQFCWTKRM 567
H ++V GFC ++Y+Y+E G+L +L +D W +R+
Sbjct: 94 HPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRL 142
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 84 PLYSSIPDEIGNMKSLSDLQL---SENI----------LNGS----IPLALGNLTNLVVL 126
P S D++ + LS+LQ+ S NI LNG+ +P + NL+NL VL
Sbjct: 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVL 275
Query: 127 DLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIP 186
DLS N+L+ S+P + L Y ++N + ++P E GN+ +L L + N L
Sbjct: 276 DLSHNRLT-SLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333
Query: 187 LSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQ-LE 245
L + + + YL N EIPL H I++ + G+ E SL Q E
Sbjct: 334 KILTEKSVTGLIFYLRDNR--PEIPLPHE--RRFIEINTD-----GEPQREYDSLQQSTE 384
Query: 246 YL--DLSANTF 254
+L DL+ TF
Sbjct: 385 HLATDLAKRTF 395
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 269 HYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSG 328
H L+LSN Q I I K L+ L L+ N E+P++I ++ +L L+LSHN L+
Sbjct: 227 HALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT- 283
Query: 329 SIP----RCFE 335
S+P CF+
Sbjct: 284 SLPAELGSCFQ 294
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 217 LSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNN 276
L+S+ Q+ NN+++ + L + YL L N H +L L L YL L+ N
Sbjct: 40 LNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95
Query: 277 QFSQKIPNKI-EKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPR-CF 334
Q Q +PN + +KL +L EL L N + + +L LNL+HN L S+P+ F
Sbjct: 96 QL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVF 153
Query: 335 EEMHWLSCIDISYNALQGL 353
+++ L+ +D+SYN LQ L
Sbjct: 154 DKLTNLTELDLSYNQLQSL 172
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 21/162 (12%)
Query: 217 LSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESL-SNLVKLHYLNLSN 275
L++L L L N+L + L L+ L L N +S+P+ + L L YLNL++
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAH 142
Query: 276 NQFSQKIPNKI-EKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCF 334
NQ Q +P + +KL +L+ELDLS+N + + L+ L L N L F
Sbjct: 143 NQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201
Query: 335 EEMH-----WL-------SCIDISY-----NALQGLIPNSTA 359
+ + WL +C I Y N G++ NS
Sbjct: 202 DRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAG 243
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 5/146 (3%)
Query: 116 ALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEI-GNMNSLSIL 174
AL LTNL L L+ N+L F LT+L L L EN L S+P + + +L+ L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYL 138
Query: 175 DLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLG-HGMLSSLIQLTLNNNELSGQ 233
+L+ N+L S+P + + +L L LS N + +P G L+ L L L N+L
Sbjct: 139 NLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 234 LSPELGSLIQLEYLDLSANTFHKSIP 259
L L+Y+ L N + + P
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 88 SIPDEI-GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTS 146
S+PD + + +L+ L L+ N L LTNL LDLS N+L F LT
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182
Query: 147 LSILYLYENSLCDSIPKEI-GNMNSLSILDLSSNKLNGSIP 186
L L LY+N L S+P + + SL + L N + + P
Sbjct: 183 LKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 456 EIIRATNNFDD------GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPL---PDEMACQQ 506
E+ TNNFD+ G+ +G GG G VYK + V VKK + + +E+ +Q
Sbjct: 19 ELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL--KQ 75
Query: 507 EFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKR 566
+F E+ + K +H N+V+ GF S +VY Y+ GSL LS W R
Sbjct: 76 QFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMR 135
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 456 EIIRATNNFDD------GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPL---PDEMACQQ 506
E+ TNNFD+ G+ +G GG G VYK + V VKK + + +E+ +Q
Sbjct: 19 ELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL--KQ 75
Query: 507 EFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKR 566
+F E+ + K +H N+V+ GF S +VY Y+ GSL LS W R
Sbjct: 76 QFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMR 135
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 456 EIIRATNNFDD------GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPL---PDEMACQQ 506
E+ TNNFD+ G+ +G GG G VYK + V VKK + + +E+ +Q
Sbjct: 13 ELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL--KQ 69
Query: 507 EFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKR 566
+F E+ + K +H N+V+ GF S +VY Y+ GSL LS W R
Sbjct: 70 QFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMR 129
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 467 GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
G IG+G G+VYK K V + +P P ++ Q F NEV L K RH NI+ F
Sbjct: 13 GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQL---QAFKNEVGVLRKTRHVNILLF 69
Query: 527 YGFCSHALHSFVVYEYLEMGSLAMNL 552
G+ S A +V ++ E SL +L
Sbjct: 70 MGY-STAPQLAIVTQWCEGSSLYHHL 94
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 470 IGNGGQGSVYKAKL----PTGE--IVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNI 523
+G G G V+ A+ PT + +V VK P +A +++F E LT ++H +I
Sbjct: 23 LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP---TLAARKDFQREAELLTNLQHEHI 79
Query: 524 VKFYGFCSHALHSFVVYEYLEMGSL 548
VKFYG C +V+EY++ G L
Sbjct: 80 VKFYGVCGDGDPLIMVFEYMKHGDL 104
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVK-----KFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G+V++A+ G V VK FH+ EFL EV + ++RH NIV
Sbjct: 45 IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHA------ERVNEFLREVAIMKRLRHPNIV 97
Query: 525 KFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMN 568
F G + + +V EYL GSL L A EQ +R++
Sbjct: 98 LFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLS 141
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVK-----KFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G+V++A+ G V VK FH+ EFL EV + ++RH NIV
Sbjct: 45 IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHA------ERVNEFLREVAIMKRLRHPNIV 97
Query: 525 KFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMN 568
F G + + +V EYL GSL L A EQ +R++
Sbjct: 98 LFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLS 141
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 467 GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
G IG+G G+VYK K V + +P P ++ Q F NEV L K RH NI+ F
Sbjct: 29 GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQL---QAFKNEVGVLRKTRHVNILLF 85
Query: 527 YGFCSHALHSFVVYEYLEMGSLAMNL 552
G+ S A +V ++ E SL +L
Sbjct: 86 MGY-STAPQLAIVTQWCEGSSLYHHL 110
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 456 EIIRATNNFDD------GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPL---PDEMACQQ 506
E+ TNNFD+ G+ G GG G VYK + V VKK + + +E+ +Q
Sbjct: 10 ELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL--KQ 66
Query: 507 EFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKR 566
+F E+ K +H N+V+ GF S +VY Y GSL LS W R
Sbjct: 67 QFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPLSWHXR 126
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 24/173 (13%)
Query: 179 NKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLI---QLTLNNNELSGQLS 235
+K + S+P A + + ++LYL N I P G+ SLI +L L +N+L
Sbjct: 28 SKRHASVP---AGIPTNAQILYLHDNQITKLEP---GVFDSLINLKELYLGSNQLGALPV 81
Query: 236 PELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSEL 295
SL QL LDL N LV L L + N+ ++ +P IE+L HL+ L
Sbjct: 82 GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHL 140
Query: 296 DLSHNIFREEIPSQICSMQSLEKL-NLSHNNLSGSIPRCFEEMHWLSCIDISY 347
L N + IP + ++L +L+H L G+ C C DI Y
Sbjct: 141 ALDQNQLK-SIPH-----GAFDRLSSLTHAYLFGNPWDC-------ECRDIMY 180
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 90 PDEIGNMKSLSDLQLSENILNGSIPLAL-GNLTNLVVLDLSTNKLSGSIPLSFANLTSLS 148
P ++ +L +L L N L G++P+ + +LT L VLDL TN+L+ F L L
Sbjct: 57 PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115
Query: 149 ILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSN 204
L++ N L + +P+ I + L+ L L N+L SIP + +SL YL N
Sbjct: 116 ELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 39/168 (23%)
Query: 131 NKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLA 190
+K S+P T+ ILYL++N + KL + SL
Sbjct: 28 SKRHASVPAGIP--TNAQILYLHDNQI---------------------TKLEPGVFDSLI 64
Query: 191 NLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLT---LNNNELSGQLSPELGSLIQLEYL 247
N LK LYL SN + G +P+ G+ SL QLT L N+L+ S L+ L+ L
Sbjct: 65 N----LKELYLGSNQL-GALPV--GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117
Query: 248 DLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIP----NKIEKLIH 291
+ N +P + L L +L L NQ + IP +++ L H
Sbjct: 118 FMCCNKL-TELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTH 163
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 467 GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
G IG+G G+VYK K V + +P P ++ Q F NEV L K RH NI+ F
Sbjct: 15 GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQL---QAFKNEVGVLRKTRHVNILLF 71
Query: 527 YGFCSHALHSFVVYEYLEMGSLAMNL 552
G+ + + +V ++ E SL +L
Sbjct: 72 MGYSTKPQLA-IVTQWCEGSSLYHHL 96
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 467 GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
G IG+G G+VYK K V + +P P ++ Q F NEV L K RH NI+ F
Sbjct: 33 GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQL---QAFKNEVGVLRKTRHVNILLF 89
Query: 527 YGFCSHALHSFVVYEYLEMGSLAMNL 552
G+ + + +V ++ E SL +L
Sbjct: 90 MGYSTKPQLA-IVTQWCEGSSLYHHL 114
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 467 GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
G IG+G G+VYK K V + +P P ++ Q F NEV L K RH NI+ F
Sbjct: 40 GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQL---QAFKNEVGVLRKTRHVNILLF 96
Query: 527 YGFCSHALHSFVVYEYLEMGSLAMNL 552
G+ + + +V ++ E SL +L
Sbjct: 97 MGYSTKPQLA-IVTQWCEGSSLYHHL 121
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 467 GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
G IG+G G+VYK K V + +P P ++ Q F NEV L K RH NI+ F
Sbjct: 13 GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQL---QAFKNEVGVLRKTRHVNILLF 69
Query: 527 YGFCSHALHSFVVYEYLEMGSLAMNL 552
G+ + + +V ++ E SL +L
Sbjct: 70 MGYSTKPQLA-IVTQWCEGSSLYHHL 94
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 467 GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
G IG+G G+VYK K V + +P P ++ Q F NEV L K RH NI+ F
Sbjct: 18 GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQL---QAFKNEVGVLRKTRHVNILLF 74
Query: 527 YGFCSHALHSFVVYEYLEMGSLAMNL 552
G+ + + +V ++ E SL +L
Sbjct: 75 MGYSTKPQLA-IVTQWCEGSSLYHHL 99
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 467 GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
G IG+G G+VYK K V + +P P ++ Q F NEV L K RH NI+ F
Sbjct: 41 GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQL---QAFKNEVGVLRKTRHVNILLF 97
Query: 527 YGFCSHALHSFVVYEYLEMGSLAMNL 552
G+ + + +V ++ E SL +L
Sbjct: 98 MGYSTKPQLA-IVTQWCEGSSLYHHL 122
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 467 GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
G IG+G G+VYK K V + +P P ++ Q F NEV L K RH NI+ F
Sbjct: 41 GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQL---QAFKNEVGVLRKTRHVNILLF 97
Query: 527 YGFCSHALHSFVVYEYLEMGSLAMNL 552
G+ + + +V ++ E SL +L
Sbjct: 98 MGYSTKPQLA-IVTQWCEGSSLYHHL 122
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 467 GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
G IG+G G+VYK K V + +P P ++ Q F NEV L K RH NI+ F
Sbjct: 17 GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQL---QAFKNEVGVLRKTRHVNILLF 73
Query: 527 YGFCSHALHSFVVYEYLEMGSLAMNL 552
G+ + + +V ++ E SL +L
Sbjct: 74 MGYSTKPQLA-IVTQWCEGSSLYHHL 98
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 467 GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
G IG+G G+VYK K V + +P P ++ Q F NEV L K RH NI+ F
Sbjct: 18 GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQL---QAFKNEVGVLRKTRHVNILLF 74
Query: 527 YGFCSHALHSFVVYEYLEMGSLAMNL 552
G+ + + +V ++ E SL +L
Sbjct: 75 MGYSTKPQLA-IVTQWCEGSSLYHHL 99
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 467 GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
G IG+G G+VYK K V + +P P ++ Q F NEV L K RH NI+ F
Sbjct: 13 GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQL---QAFKNEVGVLRKTRHVNILLF 69
Query: 527 YGFCSHALHSFVVYEYLEMGSLAMNL 552
G+ + + +V ++ E SL +L
Sbjct: 70 MGYSTKPQLA-IVTQWCEGSSLYHHL 94
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 467 GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
G IG+G G+VYK K V + +P P ++ Q F NEV L K RH NI+ F
Sbjct: 29 GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQL---QAFKNEVGVLRKTRHVNILLF 85
Query: 527 YGFCSHALHSFVVYEYLEMGSLAMNL 552
G+ + + +V ++ E SL +L
Sbjct: 86 MGYSTKPQLA-IVTQWCEGSSLYHHL 110
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
IG+G G+VYK K V + K P P++ Q F NEV L K RH NI+ F G+
Sbjct: 44 IGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQF---QAFRNEVAVLRKTRHVNILLFMGY 100
Query: 530 CSHALHSFVVYEYLEMGSLAMNL 552
+ + +V ++ E SL +L
Sbjct: 101 MTKD-NLAIVTQWCEGSSLYKHL 122
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
+FD G +G G G+VY A+ + I+ +K ++ + + EV + +RH
Sbjct: 12 EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71
Query: 521 RNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
NI++ YG+ A +++ EY +G++ L
Sbjct: 72 PNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 105
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
+FD G +G G G+VY A+ + I+ +K ++ + + EV + +RH
Sbjct: 12 EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71
Query: 521 RNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
NI++ YG+ A +++ EY +G++ L
Sbjct: 72 PNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 105
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 104
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 104
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 104
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 104
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 5 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 65 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 100
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 101
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 101
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 101
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 101
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 101
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 10 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 69
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 70 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 105
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 67 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 102
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 104
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 150/358 (41%), Gaps = 61/358 (17%)
Query: 19 ILGAPMEEEDLI---EKILDGLGDDYKELVRAVQARDTSISFDELHEKLLTFEATAHFSV 75
ILG +E +L I++GL D + R D S + ++ F A+ S
Sbjct: 232 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS-------DDIVKFHCLANVSA 284
Query: 76 LAFTGQDWPLYSSIPDEIGNMKSLSDL--QLSENILNGSIPLALGNLTNLVVLDLSTNKL 133
++ G +P +SLS + QL + +L L L L+ NK
Sbjct: 285 MSLAGVSIKYLEDVPKHF-KWQSLSIIRCQLKQ--------FPTLDLPFLKSLTLTMNK- 334
Query: 134 SGSIPLSFANLTSLSILYLYENSL----CDSIPKEIGNMNSLSILDLSSNKLNGSIPLSL 189
GSI L SLS L L N+L C S ++G NSL LDLS NG+I +S
Sbjct: 335 -GSISFKKVALPSLSYLDLSRNALSFSGCCSY-SDLGT-NSLRHLDLS---FNGAIIMS- 387
Query: 190 ANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDL 249
AN ++ +L H S+L ++T E S LS E +L YLD+
Sbjct: 388 ANFMGLEELQHLDFQH------------STLKRVT----EFSAFLSLE-----KLLYLDI 426
Query: 250 SANTFHKSIPESLSNLVKLHYLNLSNNQFSQK-IPNKIEKLIHLSELDLSHNIFREEIPS 308
S L L+ L ++ N F + N +L+ LDLS +
Sbjct: 427 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 486
Query: 309 QICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQ---GLI---PNSTAF 360
++ L+ LN+SHNNL + +++ LS +D S+N ++ G++ P S AF
Sbjct: 487 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAF 544
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 26/148 (17%)
Query: 247 LDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEI 306
+DLS N S SN +L +L+LS + L HLS L L+ N +
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 307 PSQICSMQSLE------------------------KLNLSHNNL-SGSIPRCFEEMHWLS 341
P + SLE KLN++HN + S +P F + L
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 342 CIDISYNALQGLIPNSTAF-RDAPMLAL 368
+D+SYN +Q + N F R+ P + L
Sbjct: 152 HVDLSYNYIQTITVNDLQFLRENPQVNL 179
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 116 ALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILD 175
L +L+NL+ L+ N + P SF+ LTSL L E L IG + +L L+
Sbjct: 73 GLHHLSNLI---LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 129
Query: 176 LSSNKLNG-SIPLSLANLTNSLKVLYLSSNHI 206
++ N ++ +P +NLTN + V LS N+I
Sbjct: 130 VAHNFIHSCKLPAYFSNLTNLVHV-DLSYNYI 160
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 93 IGNMKSLSDLQLSENILNG-SIPLALGNLTNLVVLDLSTN 131
IG + +L L ++ N ++ +P NLTNLV +DLS N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 8 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 68 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 103
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 8 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 68 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 103
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 101
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 67 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 102
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 101
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 67 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 102
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 106
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 104
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 150/358 (41%), Gaps = 61/358 (17%)
Query: 19 ILGAPMEEEDLI---EKILDGLGDDYKELVRAVQARDTSISFDELHEKLLTFEATAHFSV 75
ILG +E +L I++GL D + R D S + ++ F A+ S
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS-------DDIVKFHCLANVSA 289
Query: 76 LAFTGQDWPLYSSIPDEIGNMKSLSDL--QLSENILNGSIPLALGNLTNLVVLDLSTNKL 133
++ G +P +SLS + QL + +L L L L+ NK
Sbjct: 290 MSLAGVSIKYLEDVPKHF-KWQSLSIIRCQLKQ--------FPTLDLPFLKSLTLTMNK- 339
Query: 134 SGSIPLSFANLTSLSILYLYENSL----CDSIPKEIGNMNSLSILDLSSNKLNGSIPLSL 189
GSI L SLS L L N+L C S ++G NSL LDLS NG+I +S
Sbjct: 340 -GSISFKKVALPSLSYLDLSRNALSFSGCCSY-SDLGT-NSLRHLDLS---FNGAIIMS- 392
Query: 190 ANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDL 249
AN ++ +L H S+L ++T E S LS E +L YLD+
Sbjct: 393 ANFMGLEELQHLDFQH------------STLKRVT----EFSAFLSLE-----KLLYLDI 431
Query: 250 SANTFHKSIPESLSNLVKLHYLNLSNNQFSQK-IPNKIEKLIHLSELDLSHNIFREEIPS 308
S L L+ L ++ N F + N +L+ LDLS +
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491
Query: 309 QICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQ---GLI---PNSTAF 360
++ L+ LN+SHNNL + +++ LS +D S+N ++ G++ P S AF
Sbjct: 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAF 549
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 26/148 (17%)
Query: 247 LDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEI 306
+DLS N S SN +L +L+LS + L HLS L L+ N +
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 307 PSQICSMQSLE------------------------KLNLSHNNL-SGSIPRCFEEMHWLS 341
P + SLE KLN++HN + S +P F + L
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 342 CIDISYNALQGLIPNSTAF-RDAPMLAL 368
+D+SYN +Q + N F R+ P + L
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNL 184
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 116 ALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILD 175
L +L+NL+ L+ N + P SF+ LTSL L E L IG + +L L+
Sbjct: 78 GLHHLSNLI---LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134
Query: 176 LSSNKLNG-SIPLSLANLTNSLKVLYLSSNHI 206
++ N ++ +P +NLTN + V LS N+I
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHV-DLSYNYI 165
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 93 IGNMKSLSDLQLSENILNG-SIPLALGNLTNLVVLDLSTNKL 133
IG + +L L ++ N ++ +P NLTNLV +DLS N +
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 3 ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 63 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 98
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 106
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 23 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 82
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 83 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 118
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKK--FHSPLPDEMACQQEFLNEVNALTK 517
A +F+ G +G G G+VY A+ + + K F + L ++ + + EV +
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQL-EKAGVEHQLRREVEIQSH 90
Query: 518 IRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
+RH NI++ YG+ A +++ EY +G++ L
Sbjct: 91 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 127
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKK--FHSPLPDEMACQQEFLNEVNALTK 517
A +F+ G +G G G+VY A+ + + K F + L ++ + + EV +
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQL-EKAGVEHQLRREVEIQSH 90
Query: 518 IRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
+RH NI++ YG+ A +++ EY +G++ L
Sbjct: 91 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 127
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 467 GHCIGNGGQGSVYKAKLPT-GEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVK 525
G IG G G V+ +L +V VK LP ++ + +FL E L + H NIV+
Sbjct: 119 GEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDL--KAKFLQEARILKQYSHPNIVR 176
Query: 526 FYGFCSHALHSFVVYEYLEMGSLAMNLSNDAA 557
G C+ ++V E ++ G L + A
Sbjct: 177 LIGVCTQKQPIYIVMELVQGGDFLTFLRTEGA 208
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY +G++ L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 106
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 467 GHCIGNGGQGSVYKAKLPT-GEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVK 525
G IG G G V+ +L +V VK LP ++ + +FL E L + H NIV+
Sbjct: 119 GEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDL--KAKFLQEARILKQYSHPNIVR 176
Query: 526 FYGFCSHALHSFVVYEYLEMGSLAMNLSNDAA 557
G C+ ++V E ++ G L + A
Sbjct: 177 LIGVCTQKQPIYIVMELVQGGDFLTFLRTEGA 208
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 91/211 (43%), Gaps = 12/211 (5%)
Query: 119 NLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSS 178
+L +L VL L N + +F L SL+ L L++N L ++ L L L +
Sbjct: 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156
Query: 179 NKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIP----LGHGMLSSLIQLT-LNNNELSGQ 233
N + SIP N SL L L GE+ + G L L LN + +
Sbjct: 157 NPIE-SIPSYAFNRVPSLMRLDL------GELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209
Query: 234 LSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLS 293
P L L+ LE L++S N F + P S L L L + N+Q S N + L L
Sbjct: 210 DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269
Query: 294 ELDLSHNIFREEIPSQICSMQSLEKLNLSHN 324
EL+L+HN ++ L +L+L HN
Sbjct: 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 5/212 (2%)
Query: 121 TNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNK 180
+N L+L N + +F +L L +L L NS+ + SL+ L+L N
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 181 LNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNN-NELSGQLSPELG 239
L IP + L+ L+L +N I + SL++L L +L
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193
Query: 240 SLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSH 299
L L+YL+L K +P +L+ LV L L +S N F + P L L +L + +
Sbjct: 194 GLFNLKYLNLGMCNI-KDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 300 NIFREEIPSQICSMQSLEKLNLSHNNLSGSIP 331
+ + + SL +LNL+HNNLS S+P
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLS-SLP 282
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 111/260 (42%), Gaps = 35/260 (13%)
Query: 99 LSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYEN--- 155
L +L L+ L G +P + L L L LS N +S AN SL+ LY+ N
Sbjct: 277 LQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKK 335
Query: 156 -SLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGH 214
L +++GN+ +L DLS N + S SL L N
Sbjct: 336 LHLGVGCLEKLGNLQTL---DLSHNDIEASDCCSLQ-LKN-------------------- 371
Query: 215 GMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPES-LSNLVKLHYLNL 273
LS L L L++NE G S QLE LDL+ H + P+S NL L LNL
Sbjct: 372 --LSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNL 429
Query: 274 SNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQ---SLEKLNLSHNNLSGSI 330
+ + + L L L+L N F++ ++ +Q SLE L LS L
Sbjct: 430 TYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSID 489
Query: 331 PRCFEEMHWLSCIDISYNAL 350
+ F + +S +D+S+N+L
Sbjct: 490 QQAFHSLGKMSHVDLSHNSL 509
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 97/369 (26%), Positives = 143/369 (38%), Gaps = 78/369 (21%)
Query: 53 TSISFDELHEKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGS 112
T + +HE TF++ S L TG PL + KSL L L + ++
Sbjct: 62 TRCQINWIHED--TFQSHHQLSTLVLTGN--PLIFMAETSLNGPKSLKHLFLIQTGISNL 117
Query: 113 IPLALGNLTNLVVLDLSTNKLSG-SIPLSFA--NLTSLSILYLYENSLCDSIPKEIGNMN 169
+ + NL NL L L +N +S P F NL L ++N+ I +E +M
Sbjct: 118 EFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLD----FQNNAIHYISRE--DMR 171
Query: 170 SLS-----ILDLSSNKLNG--------------------SIPLSLANLTNSL-KVLYLSS 203
SL L+ + N + G ++ + L NS + L+L +
Sbjct: 172 SLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGT 231
Query: 204 NHIVGEIPLGHGMLSSLIQ-----LTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSI 258
+ + + ML L + L L + S S QL+ LDL+A T K +
Sbjct: 232 FEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTA-THLKGL 290
Query: 259 PESLSNLVKLHYLNLSNNQFSQ-------KIPN------------------KIEKLIHLS 293
P + L L L LS N F Q P+ +EKL +L
Sbjct: 291 PSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQ 350
Query: 294 ELDLSHNIFREEIPSQICSMQ-----SLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYN 348
LDLSHN S CS+Q L+ LNLSHN G + F+E L +D+++
Sbjct: 351 TLDLSHNDIE---ASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 349 ALQGLIPNS 357
L P S
Sbjct: 408 RLHINAPQS 416
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 11/216 (5%)
Query: 91 DEIGNMKSLSDLQLSENILNGS--IPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLS 148
+++GN+++L LS N + S L L NL++L L+LS N+ G +F L
Sbjct: 344 EKLGNLQTLD---LSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLE 400
Query: 149 ILYLYENSLCDSIPKE-IGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIV 207
+L L L + P+ N++ L +L+L+ L+ S LA L L+ L L NH
Sbjct: 401 LLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLP-VLRHLNLKGNHFQ 459
Query: 208 GEIPLGHGMLSSLIQLTLNNNELSGQLSPE---LGSLIQLEYLDLSANTFHKSIPESLSN 264
+L ++ L + G LS + SL ++ ++DLS N+ +SLS+
Sbjct: 460 DGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSH 519
Query: 265 LVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHN 300
L + YLNL+ N + P + L S ++LSHN
Sbjct: 520 LKGI-YLNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 87 SSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTS 146
S IPD + N L+ S N L L NL LDL+ +++ +F +
Sbjct: 22 SEIPDTLPNTTEF--LEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQ 79
Query: 147 LSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHI 206
LS L L N L + SL L L ++ + + NL N L+ LYL SNHI
Sbjct: 80 LSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLEN-LESLYLGSNHI 138
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 6/186 (3%)
Query: 167 NMNSLSILDLSSNKLNGSIPLSLANL-TNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTL 225
++ SL LDLS N L+ S ++ T SLK L LS N ++ G L L L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDF 403
Query: 226 NNNELSGQLS--PELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQK-I 282
++ L Q+S SL L YLD+S + + L L L ++ N F + +
Sbjct: 404 QHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 283 PNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSC 342
P+ +L +L+ LDLS + P+ S+ SL+ LN+SHNN ++ ++ L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522
Query: 343 IDISYN 348
+D S N
Sbjct: 523 LDYSLN 528
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 113 IPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSL--CDSIPKEIGNMNS 170
+P L NL LDLS +L P +F +L+SL +L + N+ D+ P + +NS
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNS 519
Query: 171 LSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSN 204
L +LD S N + S L + +SL L L+ N
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 120 LTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDS-IPKEIGNMNSLSILDLSS 178
L NL+ LD+S + F L+SL +L + NS ++ +P + +L+ LDLS
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 179 NKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPEL 238
+L P + +L+ SL+VL +S N+ + L+SL L + N + EL
Sbjct: 480 CQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Query: 239 GSL-IQLEYLDLSANTF 254
L +L+L+ N F
Sbjct: 539 QHFPSSLAFLNLTQNDF 555
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 93 IGNMKSLSDLQLSENILNG-SIPLALGNLTNLVVLDLSTNKL 133
IG++K+L +L ++ N++ +P NLTNL LDLS+NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 7/150 (4%)
Query: 112 SIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGN-MNS 170
S+P + T LDL TN L F LTSL+ LYL N L S+P + N + S
Sbjct: 21 SVPTGIPAQT--TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTS 77
Query: 171 LSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLG-HGMLSSLIQLTLNNNE 229
L+ L+LS+N+L S+P + + LK L L++N + +P G L+ L L L N+
Sbjct: 78 LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQ 135
Query: 230 LSGQLSPELGSLIQLEYLDLSANTFHKSIP 259
L L L+Y+ L N + + P
Sbjct: 136 LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 72/169 (42%), Gaps = 21/169 (12%)
Query: 193 TNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSAN 252
TNSLK L N + E L+SL QL L N+L + L L YL+LS N
Sbjct: 37 TNSLKSL---PNGVFDE-------LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86
Query: 253 TFHKSIPESL-SNLVKLHYLNLSNNQFSQKIPNKI-EKLIHLSELDLSHNIFREEIPSQI 310
+S+P + L +L L L+ NQ Q +P+ + +KL L +L L N +
Sbjct: 87 QL-QSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144
Query: 311 CSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTA 359
+ SL+ + L N + P W+ N G++ NS
Sbjct: 145 DRLTSLQYIWLHDNPWDCTCPGIRYLSEWI-------NKHSGVVRNSAG 186
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 208 GEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSN-LV 266
G + G+ + L L N L + L L L L N +S+P + N L
Sbjct: 18 GRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLT 76
Query: 267 KLHYLNLSNNQFSQKIPNKI-EKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNN 325
L YLNLS NQ Q +PN + +KL L EL L+ N + + L+ L L N
Sbjct: 77 SLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135
Query: 326 LSGSIP 331
L S+P
Sbjct: 136 LK-SVP 140
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 88 SIPDEI-GNMKSLSDLQLSENILNGSIPLALGN-LTNLVVLDLSTNKLSGSIPLSFANLT 145
S+P+ + + SL+ L L N L S+P + N LT+L L+LSTN+L F LT
Sbjct: 42 SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100
Query: 146 SLSILYLYENSLCDSIPKEI-GNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSN 204
L L L N L S+P + + L L L N+L S+P + + SL+ ++L N
Sbjct: 101 QLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 88 SIPDEIGN-MKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTS 146
S+P+ + N + SL+ L LS N L LT L L L+TN+L F LT
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ 125
Query: 147 LSILYLYENSLCDSIPKEI-GNMNSLSILDLSSNKLNGSIP 186
L L LY+N L S+P + + SL + L N + + P
Sbjct: 126 LKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ + +++ EY +G++ L
Sbjct: 66 RHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQK 101
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 8/139 (5%)
Query: 217 LSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNN 276
L+S+ Q+ NN+++ + L + YL L N H +L L L YL L+ N
Sbjct: 40 LNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95
Query: 277 QFSQKIPNKI-EKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPR-CF 334
Q Q +PN + +KL +L EL L N + + +L L L HN L S+P+ F
Sbjct: 96 QL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVF 153
Query: 335 EEMHWLSCIDISYNALQGL 353
+++ L+ +D+ N LQ L
Sbjct: 154 DKLTNLTRLDLDNNQLQSL 172
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 120 LTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEI-GNMNSLSILDLSS 178
LTNL L L N+L F LT+L+ LYLY N L S+PK + + +L+ LDL +
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL-QSLPKGVFDKLTNLTRLDLDN 166
Query: 179 NKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLG-HGMLSSLIQLTLNNN 228
N+L S+P + + LK L L+ N + +P G L+SL + L NN
Sbjct: 167 NQLQ-SLPEGVFDKLTQLKQLSLNDNQL-KSVPDGVFDRLTSLTHIWLLNN 215
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 16/145 (11%)
Query: 217 LSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESL-SNLVKLHYLNLSN 275
L++L L L N+L + L L+ L L N +S+P+ + L L YL L +
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLYLYH 142
Query: 276 NQFSQKIPNKI-EKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCF 334
NQ Q +P + +KL +L+ LDL +N + + L++L+L+ N L F
Sbjct: 143 NQL-QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVF 201
Query: 335 EEMH-----WL-------SCIDISY 347
+ + WL +C DI Y
Sbjct: 202 DRLTSLTHIWLLNNPWDCACSDILY 226
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 33/243 (13%)
Query: 138 PLSFANLTSLSILYLYENSLCDSIPKEI-GNMNSLSILDLSSNKLNGSIPLSLANLTNSL 196
P F N+ L++L L N L S+P+ I N L+ L +S+N L I T SL
Sbjct: 116 PHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSL 173
Query: 197 KVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHK 256
+ L LSSN + + ++ SL ++ N LS P I +E LD S N+ +
Sbjct: 174 QNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIP-----IAVEELDASHNSINV 225
Query: 257 SI-PESLS-NLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQ 314
P ++ ++KL + NL++ + P L E+DLS+N + + MQ
Sbjct: 226 VRGPVNVELTILKLQHNNLTDTAWLLNYPG-------LVEVDLSYNELEKIMYHPFVKMQ 278
Query: 315 SLEKLNLSHN-----NLSGS-IPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLAL 368
LE+L +S+N NL G IP L +D+S+N L + N F L L
Sbjct: 279 RLERLYISNNRLVALNLYGQPIP-------TLKVLDLSHNHLLHVERNQPQFDRLENLYL 331
Query: 369 QGN 371
N
Sbjct: 332 DHN 334
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 21/113 (18%)
Query: 117 LGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLC------DSIPKEIGNMNS 170
L N LV +DLS N+L + F + L LY+ N L IP +
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP-------T 302
Query: 171 LSILDLSSNKL-----NGSIPLSLANLT---NSLKVLYLSSNHIVGEIPLGHG 215
L +LDLS N L N L NL NS+ L LS++H + + L H
Sbjct: 303 LKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 355
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY G + L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQK 106
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 464 FDDGHCIGNGGQGSVYKA-KLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRN 522
FD +G G GSVYKA TG+IV +K+ P+ ++ QE + E++ + + +
Sbjct: 31 FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQV--PVESDL---QEIIKEISIMQQCDSPH 85
Query: 523 IVKFYGFCSHALHSFVVYEYLEMGSLA--MNLSNDAAAE 559
+VK+YG ++V EY GS++ + L N E
Sbjct: 86 VVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTE 124
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 4/158 (2%)
Query: 99 LSDLQLSENILNGSI-PLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSL 157
L L LS+N S+ P L L L L L P F L +L LYL +N+L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 158 CDSIPKE-IGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGM 216
++P + ++ +L+ L L N+++ S+P +SL L L N + P
Sbjct: 142 -QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 217 LSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTF 254
L L+ L L N LS + L L L+YL L+ N +
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 88 SIPDE-IGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTS 146
++PD+ ++ +L+ L L N ++ A L +L L L N+++ P +F +L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Query: 147 LSILYLYENSLCDSIPKE-IGNMNSLSILDLSSN 179
L LYL+ N+L ++P E + + +L L L+ N
Sbjct: 203 LMTLYLFANNL-SALPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 4/158 (2%)
Query: 99 LSDLQLSENILNGSI-PLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSL 157
L L LS+N S+ P L L L L L P F L +L LYL +N+L
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 158 CDSIPKE-IGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGM 216
++P + ++ +L+ L L N+++ S+P +SL L L N + P
Sbjct: 141 -QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 198
Query: 217 LSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTF 254
L L+ L L N LS + L L L+YL L+ N +
Sbjct: 199 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 236
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 81 QDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLS 140
QD L + D ++ +L+ L L N ++ A L +L L L N+++ P +
Sbjct: 136 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 195
Query: 141 FANLTSLSILYLYENSLCDSIPKE-IGNMNSLSILDLSSN 179
F +L L LYL+ N+L ++P E + + +L L L+ N
Sbjct: 196 FRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDN 234
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
A +F+ G +G G G+VY A+ + I+ +K ++ + + EV + +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
RH NI++ YG+ A +++ EY G + L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQK 106
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 458 IRATNNFDDGHC-----IGNGGQGSVYKAKLP-----TGEIVDVKKFHSPLPDEMACQQE 507
+R F++ H +G G GSV + TGE+V VKK + + ++
Sbjct: 1 MRDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RD 57
Query: 508 FLNEVNALTKIRHRNIVKFYGFCSHALHS--FVVYEYLEMGSL 548
F E+ L ++H NIVK+ G C A ++ EYL GSL
Sbjct: 58 FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 100
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 6/186 (3%)
Query: 167 NMNSLSILDLSSNKLNGSIPLSLANL-TNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTL 225
++ SL LDLS N L+ S ++ T SLK L LS N ++ G L L L
Sbjct: 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDF 427
Query: 226 NNNELSGQLS--PELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQK-I 282
++ L Q+S SL L YLD+S + + L L L ++ N F + +
Sbjct: 428 QHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 486
Query: 283 PNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSC 342
P+ +L +L+ LDLS + P+ S+ SL+ LN+SHNN ++ ++ L
Sbjct: 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546
Query: 343 IDISYN 348
+D S N
Sbjct: 547 LDYSLN 552
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 113 IPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSL--CDSIPKEIGNMNS 170
+P L NL LDLS +L P +F +L+SL +L + N+ D+ P + +NS
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNS 543
Query: 171 LSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSN 204
L +LD S N + S L + +SL L L+ N
Sbjct: 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 120 LTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDS-IPKEIGNMNSLSILDLSS 178
L NL+ LD+S + F L+SL +L + NS ++ +P + +L+ LDLS
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 179 NKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPEL 238
+L P + +L+ SL+VL +S N+ + L+SL L + N + EL
Sbjct: 504 CQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562
Query: 239 GSL-IQLEYLDLSANTF 254
L +L+L+ N F
Sbjct: 563 QHFPSSLAFLNLTQNDF 579
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 93 IGNMKSLSDLQLSENILNG-SIPLALGNLTNLVVLDLSTNKL 133
IG++K+L +L ++ N++ +P NLTNL LDLS+NK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 470 IGNGGQGSVYKAK----LPTGE--IVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNI 523
+G G G V+ A+ LP + +V VK + +Q+F E LT ++H++I
Sbjct: 26 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA---SESARQDFQREAELLTMLQHQHI 82
Query: 524 VKFYGFCSHALHSFVVYEYLEMGSL 548
V+F+G C+ +V+EY+ G L
Sbjct: 83 VRFFGVCTEGRPLLMVFEYMRHGDL 107
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 470 IGNGGQGSVYKAK----LPTGE--IVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNI 523
+G G G V+ A+ LP + +V VK + +Q+F E LT ++H++I
Sbjct: 20 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA---SESARQDFQREAELLTMLQHQHI 76
Query: 524 VKFYGFCSHALHSFVVYEYLEMGSL 548
V+F+G C+ +V+EY+ G L
Sbjct: 77 VRFFGVCTEGRPLLMVFEYMRHGDL 101
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 470 IGNGGQGSVYKAK----LPTGE--IVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNI 523
+G G G V+ A+ LP + +V VK + +Q+F E LT ++H++I
Sbjct: 49 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA---SESARQDFQREAELLTMLQHQHI 105
Query: 524 VKFYGFCSHALHSFVVYEYLEMGSL 548
V+F+G C+ +V+EY+ G L
Sbjct: 106 VRFFGVCTEGRPLLMVFEYMRHGDL 130
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 459 RATNNFDDGHC-----IGNGGQGSVYKAKLP-----TGEIVDVKKFHSPLPDEMACQQEF 508
R F++ H +G G GSV + TGE+V VKK + + ++F
Sbjct: 6 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDF 62
Query: 509 LNEVNALTKIRHRNIVKFYGFCSHALHS--FVVYEYLEMGSL 548
E+ L ++H NIVK+ G C A ++ EYL GSL
Sbjct: 63 EREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 104
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 459 RATNNFDDGHC-----IGNGGQGSVYKAKLP-----TGEIVDVKKFHSPLPDEMACQQEF 508
R F++ H +G G GSV + TGE+V VKK + + ++F
Sbjct: 1 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDF 57
Query: 509 LNEVNALTKIRHRNIVKFYGFCSHALHS--FVVYEYLEMGSL 548
E+ L ++H NIVK+ G C A ++ EYL GSL
Sbjct: 58 EREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 99
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 33/243 (13%)
Query: 138 PLSFANLTSLSILYLYENSLCDSIPKEI-GNMNSLSILDLSSNKLNGSIPLSLANLTNSL 196
P F N+ L++L L N L S+P+ I N L+ L +S+N L I T SL
Sbjct: 110 PHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSL 167
Query: 197 KVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHK 256
+ L LSSN + + ++ SL ++ N LS P I +E LD S N+ +
Sbjct: 168 QNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIP-----IAVEELDASHNSINV 219
Query: 257 SI-PESLS-NLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQ 314
P ++ ++KL + NL++ + P L E+DLS+N + + MQ
Sbjct: 220 VRGPVNVELTILKLQHNNLTDTAWLLNYPG-------LVEVDLSYNELEKIMYHPFVKMQ 272
Query: 315 SLEKLNLSHN-----NLSGS-IPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLAL 368
LE+L +S+N NL G IP L +D+S+N L + N F L L
Sbjct: 273 RLERLYISNNRLVALNLYGQPIPT-------LKVLDLSHNHLLHVERNQPQFDRLENLYL 325
Query: 369 QGN 371
N
Sbjct: 326 DHN 328
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 21/113 (18%)
Query: 117 LGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLC------DSIPKEIGNMNS 170
L N LV +DLS N+L + F + L LY+ N L IP +
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP-------T 296
Query: 171 LSILDLSSNKL-----NGSIPLSLANLT---NSLKVLYLSSNHIVGEIPLGHG 215
L +LDLS N L N L NL NS+ L LS++H + + L H
Sbjct: 297 LKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 349
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 459 RATNNFDDGHC-----IGNGGQGSVYKAKLP-----TGEIVDVKKFHSPLPDEMACQQEF 508
R F++ H +G G GSV + TGE+V VKK + + ++F
Sbjct: 5 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDF 61
Query: 509 LNEVNALTKIRHRNIVKFYGFCSHALHS--FVVYEYLEMGSLAMNLSNDA 556
E+ L ++H NIVK+ G C A ++ EYL GSL L A
Sbjct: 62 EREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHA 111
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 459 RATNNFDDGHC-----IGNGGQGSVYKAKLP-----TGEIVDVKKFHSPLPDEMACQQEF 508
R F++ H +G G GSV + TGE+V VKK + + ++F
Sbjct: 33 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDF 89
Query: 509 LNEVNALTKIRHRNIVKFYGFCSHALHS--FVVYEYLEMGSL 548
E+ L ++H NIVK+ G C A ++ EYL GSL
Sbjct: 90 EREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 131
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 459 RATNNFDDGHC-----IGNGGQGSVYKAKLP-----TGEIVDVKKFHSPLPDEMACQQEF 508
R F++ H +G G GSV + TGE+V VKK + + ++F
Sbjct: 7 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDF 63
Query: 509 LNEVNALTKIRHRNIVKFYGFCSHALHS--FVVYEYLEMGSL 548
E+ L ++H NIVK+ G C A ++ EYL GSL
Sbjct: 64 EREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 105
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 459 RATNNFDDGHC-----IGNGGQGSVYKAKLP-----TGEIVDVKKFHSPLPDEMACQQEF 508
R F++ H +G G GSV + TGE+V VKK + + ++F
Sbjct: 9 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDF 65
Query: 509 LNEVNALTKIRHRNIVKFYGFCSHALHS--FVVYEYLEMGSL 548
E+ L ++H NIVK+ G C A ++ EYL GSL
Sbjct: 66 EREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 107
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 459 RATNNFDDGHC-----IGNGGQGSVYKAKLP-----TGEIVDVKKFHSPLPDEMACQQEF 508
R F++ H +G G GSV + TGE+V VKK + + ++F
Sbjct: 8 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDF 64
Query: 509 LNEVNALTKIRHRNIVKFYGFCSHALHS--FVVYEYLEMGSL 548
E+ L ++H NIVK+ G C A ++ EYL GSL
Sbjct: 65 EREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 106
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 459 RATNNFDDGHC-----IGNGGQGSVYKAKLP-----TGEIVDVKKFHSPLPDEMACQQEF 508
R F++ H +G G GSV + TGE+V VKK + + ++F
Sbjct: 5 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDF 61
Query: 509 LNEVNALTKIRHRNIVKFYGFCSHALHS--FVVYEYLEMGSL 548
E+ L ++H NIVK+ G C A ++ EYL GSL
Sbjct: 62 EREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 103
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%)
Query: 93 IGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYL 152
G + L L+L N L G P A +++ L L NK+ F L L L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 153 YENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLS 188
Y+N + +P ++NSL+ L+L+SN N + L+
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 262 LSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNL 321
L +LVKL L NQ + PN E H+ EL L N +E + L+ LNL
Sbjct: 53 LPHLVKLE---LKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 322 SHNNLSGSIPRCFEEMHWLSCIDISYN 348
N +S +P FE ++ L+ ++++ N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 117 LGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGN-----MNSL 171
G L +LV L+L N+L+G P +F + + L L EN + KEI N ++ L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-----KEISNKMFLGLHQL 104
Query: 172 SILDLSSNKLNGSIPLSLANLTNSLKVLYLSSN 204
L+L N+++ +P S +L NSL L L+SN
Sbjct: 105 KTLNLYDNQISCVMPGSFEHL-NSLTSLNLASN 136
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 185 IPLSLANLT-NSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQ 243
IPL L N ++ +SS+ + G +P L++L L N+L+G
Sbjct: 27 IPLHTTELLLNDNELGRISSDGLFGRLP-------HLVKLELKRNQLTGIEPNAFEGASH 79
Query: 244 LEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIF 302
++ L L N + + L +L LNL +NQ S +P E L L+ L+L+ N F
Sbjct: 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 459 RATNNFDDGHC-----IGNGGQGSVYKAKLP-----TGEIVDVKKFHSPLPDEMACQQEF 508
R F++ H +G G GSV + TGE+V VKK + + ++F
Sbjct: 3 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDF 59
Query: 509 LNEVNALTKIRHRNIVKFYGFCSHALHS--FVVYEYLEMGSL 548
E+ L ++H NIVK+ G C A ++ EYL GSL
Sbjct: 60 EREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 101
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 470 IGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYG 528
+G G G V K + TG IV +KKF D+M ++ + E+ L ++RH N+V
Sbjct: 33 VGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMV-KKIAMREIKLLKQLRHENLVNLLE 91
Query: 529 FCSHALHSFVVYEYLE 544
C ++V+E+++
Sbjct: 92 VCKKKKRWYLVFEFVD 107
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 459 RATNNFDDGHCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTK 517
R +F+ C+G GG G V++AK + +K+ LP+ +++ + EV AL K
Sbjct: 3 RYLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIR--LPNRELAREKVMREVKALAK 60
Query: 518 IRHRNIVKFY 527
+ H IV+++
Sbjct: 61 LEHPGIVRYF 70
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 112/240 (46%), Gaps = 40/240 (16%)
Query: 116 ALGNLTNLVVLDLSTNKLSGSIPLS---------------------FANLTSLSILYLYE 154
AL NLTNL L L+ + +S PL+ +N T L+ L + E
Sbjct: 105 ALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTE 164
Query: 155 NSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGH 214
+ + D P I N+ L L L+ N++ P LA+LT SL N I P+ +
Sbjct: 165 SKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLT-SLHYFTAYVNQITDITPVAN 219
Query: 215 GMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLS 274
+ L L + NN+++ LSP L +L QL +L++ N S ++ +L KL LN+
Sbjct: 220 X--TRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQI--SDINAVKDLTKLKXLNVG 273
Query: 275 NNQFSQKIPNKIEKLIHLSELD---LSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIP 331
+NQ S I L +LS+L+ L++N E I + +L L LS N+++ P
Sbjct: 274 SNQISD-----ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 107/227 (47%), Gaps = 34/227 (14%)
Query: 95 NMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTN-KLSGSIPLSFANLTSLSILYLY 153
N+ +L +L L+E+ ++ PLA NLT L+L N LS PLS N T L+ L +
Sbjct: 108 NLTNLRELYLNEDNISDISPLA--NLTKXYSLNLGANHNLSDLSPLS--NXTGLNYLTVT 163
Query: 154 ENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLG 213
E+ + D P I N+ L L L+ N++ PL A+LT SL N I P+
Sbjct: 164 ESKVKDVTP--IANLTDLYSLSLNYNQIEDISPL--ASLT-SLHYFTAYVNQITDITPVA 218
Query: 214 HGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHK----------------- 256
+ + L L + NN+++ LSP L +L QL +L++ N
Sbjct: 219 NX--TRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGS 274
Query: 257 ---SIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHN 300
S L+NL +L+ L L+NNQ + I L +L+ L LS N
Sbjct: 275 NQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQN 321
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 82/179 (45%), Gaps = 27/179 (15%)
Query: 93 IGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYL 152
+ N L+ L ++E+ + P+A NLT+L L L+ N++ PL A+LTSL
Sbjct: 151 LSNXTGLNYLTVTESKVKDVTPIA--NLTDLYSLSLNYNQIEDISPL--ASLTSLHYFTA 206
Query: 153 YENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLS-LANLT------------------ 193
Y N + D P + N L+ L + +NK+ PL+ L+ LT
Sbjct: 207 YVNQITDITP--VANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDL 264
Query: 194 NSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSAN 252
LK L + SN I L + LS L L LNNN+L + +G L L L LS N
Sbjct: 265 TKLKXLNVGSNQISDISVLNN--LSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQN 321
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 36/229 (15%)
Query: 120 LTNLVVLDLSTNKLSGSIPLS--------------------FANLTSLSILYLYENSLCD 159
LTNL L+L+ N+++ PLS NLT+L LYL E+++ D
Sbjct: 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD 124
Query: 160 SIPKEIGNMNSLSILDLSSN-KLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLS 218
P + N+ L+L +N L+ PLS N T L L ++ + + P+ + L+
Sbjct: 125 ISP--LANLTKXYSLNLGANHNLSDLSPLS--NXT-GLNYLTVTESKVKDVTPIAN--LT 177
Query: 219 SLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQF 278
L L+LN N++ +SP L SL L Y N P ++N +L+ L + NN+
Sbjct: 178 DLYSLSLNYNQIE-DISP-LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKI 233
Query: 279 SQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLS 327
+ P + L L+ L++ N + + + + L+ LN+ N +S
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQIS 278
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 101/223 (45%), Gaps = 51/223 (22%)
Query: 185 IPLSLANLTNSLKVLYLSSNHIVGEI---PLGHGMLSSLIQLTLNNNEL-SGQLSPE-LG 239
+P S + SL+ L LS N +V E G SL L L+ N L S Q + E L
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 240 SLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSH 299
+L L LD+S NTFH +P+S K+ +LNLS+
Sbjct: 385 TLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGI--------------------- 422
Query: 300 NIFREEIPSQICSMQSLEKLNLSHNNL---SGSIPRCFEEMHWLSCIDISYNALQGLIPN 356
+ + IP Q+LE L++S+NNL S +PR +E++ IS N L+ L P+
Sbjct: 423 RVVKTCIP------QTLEVLDVSNNNLDSFSLFLPR-LQELY------ISRNKLKTL-PD 468
Query: 357 STAFRDAPMLALQGNKRLCGDIKRLPPCKAFKSHKQSMKKIWV 399
++ F P+L + R +K +P S++KIW+
Sbjct: 469 ASLF---PVLLVMKISR--NQLKSVP--DGIFDRLTSLQKIWL 504
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 184 SIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTL------NNNELSGQLSPE 237
SIP + LT ++K L LS N I +GHG L + L + N + G
Sbjct: 19 SIP---SGLTAAMKSLDLSFNKITY---IGHGDLRACANLQVLILKSSRINTIEGDAFYS 72
Query: 238 LGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQF 278
LGSL E+LDLS N L L YLNL N +
Sbjct: 73 LGSL---EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 26/187 (13%)
Query: 119 NLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENS---LCDSIPKEI---------- 165
NL NL L L NK+S P +FA L L LYL +N L + +PK +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 133
Query: 166 --------GNMNSLSILDLSSNKLNGS-IPLSLANLTNSLKVLYLSSNHIVGEIPLGHGM 216
+N + +++L +N L S I L + ++ +I IP G+
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP--QGL 190
Query: 217 LSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNN 276
SL +L L+ N+++ + L L L L LS N+ SL+N L L+L+NN
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
Query: 277 QFSQKIP 283
+ K+P
Sbjct: 251 KLV-KVP 256
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Query: 247 LDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEI 306
LDL N + NL LH L L NN+ S+ P L+ L L LS N + E+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 307 PSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPML 366
P ++ ++L++L + N ++ F ++ + +++ N L+ S+ +
Sbjct: 116 PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK-----SSGIENG--- 165
Query: 367 ALQGNKRL 374
A QG K+L
Sbjct: 166 AFQGMKKL 173
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 26/187 (13%)
Query: 119 NLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENS---LCDSIPKEI---------- 165
NL NL L L NK+S P +FA L L LYL +N L + +PK +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 133
Query: 166 --------GNMNSLSILDLSSNKLNGS-IPLSLANLTNSLKVLYLSSNHIVGEIPLGHGM 216
+N + +++L +N L S I L + ++ +I IP G+
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP--QGL 190
Query: 217 LSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNN 276
SL +L L+ N+++ + L L L L LS N+ SL+N L L+L+NN
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
Query: 277 QFSQKIP 283
+ K+P
Sbjct: 251 KLV-KVP 256
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Query: 247 LDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEI 306
LDL N + NL LH L L NN+ S+ P L+ L L LS N + E+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 307 PSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPML 366
P ++ ++L++L + N ++ F ++ + +++ N L+ S+ +
Sbjct: 116 PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK-----SSGIENG--- 165
Query: 367 ALQGNKRL 374
A QG K+L
Sbjct: 166 AFQGMKKL 173
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 470 IGNGGQGSVYKAKLP-----TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
+G G GSV + TGE+V VKK + + ++F E+ L ++H NIV
Sbjct: 16 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 72
Query: 525 KFYGFCSHALHS--FVVYEYLEMGSL 548
K+ G C A ++ EYL GSL
Sbjct: 73 KYKGVCYSAGRRNLKLIMEYLPYGSL 98
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 470 IGNGGQGSVYKAKLP-----TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
+G G GSV + TGE+V VKK + + ++F E+ L ++H NIV
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 74
Query: 525 KFYGFCSHALHS--FVVYEYLEMGSL 548
K+ G C A ++ EYL GSL
Sbjct: 75 KYKGVCYSAGRRNLKLIMEYLPYGSL 100
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 51/223 (22%)
Query: 185 IPLSLANLTNSLKVLYLSSNHIVGEI---PLGHGMLSSLIQLTLNNNEL-SGQLSPE-LG 239
+P S + SL+ L LS N +V E G SL L L+ N L S Q + E L
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 410
Query: 240 SLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSH 299
+L L LD+S NTFH +P+S K+ +LNLS+
Sbjct: 411 TLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGI--------------------- 448
Query: 300 NIFREEIPSQICSMQSLEKLNLSHNNL---SGSIPRCFEEMHWLSCIDISYNALQGLIPN 356
+ + IP Q+LE L++S+NNL S +PR +E++ IS N L+ L P+
Sbjct: 449 RVVKTCIP------QTLEVLDVSNNNLDSFSLFLPR-LQELY------ISRNKLKTL-PD 494
Query: 357 STAFRDAPMLALQGNKRLCGDIKRLPPCKAFKSHKQSMKKIWV 399
++ F ++ + N+ +K +P S++KIW+
Sbjct: 495 ASLFPVLLVMKIASNQ-----LKSVP--DGIFDRLTSLQKIWL 530
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 184 SIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTL------NNNELSGQLSPE 237
SIP + LT ++K L LS N I +GHG L + L + N + G
Sbjct: 45 SIP---SGLTAAMKSLDLSFNKITY---IGHGDLRACANLQVLILKSSRINTIEGDAFYS 98
Query: 238 LGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQF 278
LGSL E+LDLS N L L YLNL N +
Sbjct: 99 LGSL---EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 136
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 215 GMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESL-SNLVKLHYLNL 273
G+ SS +L L +N+L L QL L LS N S+P+ + L KL L L
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL 83
Query: 274 SNNQFSQKIPNKI-EKLIHLSELDLSHNIFREEIPSQICS-MQSLEKLNLSHNNLSGSIP 331
N+ Q +PN + +KL L EL L N + +P I + SL+K+ L N S P
Sbjct: 84 HENKL-QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Query: 332 RCFEEMHWL 340
R WL
Sbjct: 142 RIDYLSRWL 150
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 87 SSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTS 146
+S+P I + S + L+L N L LT L L LS N++ F LT
Sbjct: 20 TSVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77
Query: 147 LSILYLYENSLCDSIPKEI-GNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNH 205
L+ILYL+EN L S+P + + L L L +N+L S+P + + SL+ ++L +N
Sbjct: 78 LTILYLHENKL-QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 135
Query: 206 IVGEIP 211
P
Sbjct: 136 WDCSCP 141
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 88 SIPDEI-GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLS-FANLT 145
S+PD + + L+ L L EN L LT L L L TN+L S+P F LT
Sbjct: 66 SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLT 124
Query: 146 SLSILYLYENSLCDSIPK 163
SL ++L+ N S P+
Sbjct: 125 SLQKIWLHTNPWDCSCPR 142
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 459 RATNNFDDGHCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTK 517
R +F+ C+G GG G V++AK + +K+ LP+ +++ + EV AL K
Sbjct: 2 RYLTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIR--LPNRELAREKVMREVKALAK 59
Query: 518 IRHRNIVKFY 527
+ H IV+++
Sbjct: 60 LEHPGIVRYF 69
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 470 IGNGGQGSVYKAKLP-----TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
+G G GSV + TGE+V VKK + + ++F E+ L ++H NIV
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 92
Query: 525 KFYGFCSHALHS--FVVYEYLEMGSL 548
K+ G C A ++ EYL GSL
Sbjct: 93 KYKGVCYSAGRRNLKLIMEYLPYGSL 118
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 470 IGNGGQGSVYKAKLP-----TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
+G G GSV + TGE+V VKK + + ++F E+ L ++H NIV
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 92
Query: 525 KFYGFCSHALHS--FVVYEYLEMGSL 548
K+ G C A ++ EYL GSL
Sbjct: 93 KYKGVCYSAGRRNLKLIMEYLPYGSL 118
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 470 IGNGGQGSVYKAKLP-----TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
+G G GSV + TGE+V VKK + + ++F E+ L ++H NIV
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 74
Query: 525 KFYGFCSHALHS--FVVYEYLEMGSL 548
K+ G C A ++ EYL GSL
Sbjct: 75 KYKGVCYSAGRRNLKLIMEYLPYGSL 100
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 124/290 (42%), Gaps = 30/290 (10%)
Query: 95 NMKSLSDLQLSEN-ILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANL--TSLSILY 151
N+K+L+ L LS+N I + + + G L +L +D S+N++ L +LS
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 152 LYENSLCDSIPKEIGN-MNS-----LSILDLSSNKLNGSIPLSLAN-LTNSLKVLYLSSN 204
L NSL + + G MN L ILD+S N I + +N ++ S + ++
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
Query: 205 HIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSN 264
HI+G H + + N +G + +LDLS
Sbjct: 241 HIMGAGFGFHNIKDP------DQNTFAGLARSSV------RHLDLSHGFVFSLNSRVFET 288
Query: 265 LVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHN 324
L L LNL+ N+ ++ L +L L+LS+N+ E S + + ++L N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 325 NLSGSIPRCFEEMHWLSCIDISYNALQGL--IPNSTAFRDAPMLALQGNK 372
+++ + F+ + L +D+ NAL + IP+ P + L GNK
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS------IPDIFLSGNK 392
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 121/290 (41%), Gaps = 27/290 (9%)
Query: 96 MKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYEN 155
+K L L L+ N +N A L NL VL+LS N L +F L ++ + L +N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 156 SLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHG 215
+ + + L LDL N L + + S+ ++LS N +V +
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNAL------TTIHFIPSIPDIFLSGNKLVTLPKIN-- 400
Query: 216 MLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHK-SIPESLSNLVKLHYLNLS 274
+ ++LI L+ N E + + L + L+ L L+ N F S ++ S L L L
Sbjct: 401 LTANLIHLSENRLE-NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459
Query: 275 NNQF-----SQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLS-- 327
N ++ + E L HL L L+HN P + +L L+L+ N L+
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519
Query: 328 --GSIPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRLC 375
+P E +DIS N L L PN F +L + NK +C
Sbjct: 520 SHNDLPANLE------ILDISRNQL--LAPNPDVFVSLSVLDITHNKFIC 561
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 86 YSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLT 145
++ +P E+ N K L+ + LS N ++ + N+T L+ L LS N+L P +F L
Sbjct: 43 FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK 102
Query: 146 SLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKL 181
SL +L L+ N + ++++LS L + +N L
Sbjct: 103 SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 246 YLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREE 305
YLD + T +P+ LSN L ++LSNN+ S + L L LS+N R
Sbjct: 37 YLDGNQFTL---VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 306 IPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNAL 350
P ++SL L+L N++S F ++ LS + I N L
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 113 IPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLS 172
+P L N +L ++DLS N++S SF+N+T L L L N L P+ + SL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 173 ILDLSSNKLN 182
+L L N ++
Sbjct: 106 LLSLHGNDIS 115
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 8/131 (6%)
Query: 212 LGHGMLSSLIQLTLNNNELSGQLSP-ELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHY 270
L G+ + +L L+ N+ + L P EL + L +DLS N +S SN+ +L
Sbjct: 25 LPKGIPRDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82
Query: 271 LNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSI 330
L LS N+ P + L L L L N + +L L + N L
Sbjct: 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL---- 138
Query: 331 PRCFEEMHWLS 341
C M WLS
Sbjct: 139 -YCDCNMQWLS 148
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 275 NNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCF 334
+N+ + +P I + ++EL L N F +P ++ + + L ++LS+N +S + F
Sbjct: 18 SNKGLKVLPKGIPR--DVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSF 74
Query: 335 EEMHWLSCIDISYNALQGLIPNS-TAFRDAPMLALQGN 371
M L + +SYN L+ + P + + +L+L GN
Sbjct: 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
+G G G V KAK + V +K+ S + ++ F+ E+ L+++ H NIVK YG
Sbjct: 17 VGRGAFGVVCKAKW-RAKDVAIKQIES-----ESERKAFIVELRQLSRVNHPNIVKLYGA 70
Query: 530 CSHALHSFVVYEYLEMGSL 548
C + + +V EY E GSL
Sbjct: 71 CLNPV--CLVMEYAEGGSL 87
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
+G G G V KAK + V +K+ S + ++ F+ E+ L+++ H NIVK YG
Sbjct: 16 VGRGAFGVVCKAKW-RAKDVAIKQIES-----ESERKAFIVELRQLSRVNHPNIVKLYGA 69
Query: 530 CSHALHSFVVYEYLEMGSL 548
C + + +V EY E GSL
Sbjct: 70 CLNPV--CLVMEYAEGGSL 86
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 8/209 (3%)
Query: 145 TSLSILYLYENSLCDSIPKEI-GNMNSLSILDLSSNKLNGSIPLSLANL-TNSLKVLYLS 202
+S + L L N L S+P + + L+ L LSSN L+ S ++ T SLK L LS
Sbjct: 28 SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 203 SNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLS--PELGSLIQLEYLDLSANTFHKSIPE 260
N ++ G L L L ++ L Q+S SL L YLD+S +
Sbjct: 87 FNGVITMSSNFLG-LEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144
Query: 261 SLSNLVKLHYLNLSNNQFSQK-IPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKL 319
+ L L L ++ N F + +P+ +L +L+ LDLS + P+ S+ SL+ L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204
Query: 320 NLSHNNLSGSIPRCFEEMHWLSCIDISYN 348
N+SHNN ++ ++ L +D S N
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 113 IPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSL--CDSIPKEIGNMNS 170
+P L NL LDLS +L P +F +L+SL +L + N+ D+ P + +NS
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNS 224
Query: 171 LSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSN 204
L +LD S N + S L + +SL L L+ N
Sbjct: 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 119 NLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDS-IPKEIGNMNSLSILDLS 177
+L NL+ LD+S + F L+SL +L + NS ++ +P + +L+ LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 178 SNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPE 237
+L P + +L+ SL+VL +S N+ + L+SL L + N + E
Sbjct: 184 QCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242
Query: 238 LGSL-IQLEYLDLSANTF 254
L L +L+L+ N F
Sbjct: 243 LQHFPSSLAFLNLTQNDF 260
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 73/173 (42%), Gaps = 29/173 (16%)
Query: 215 GMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSAN--TFHKSIPESLSNLVKLHYLN 272
G+ SS +L L +N+L L QL L LS+N +F +S L YL+
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84
Query: 273 LSNNQFSQKIPN--KIEKLIHL----------SE------------LDLSHNIFREEIPS 308
LS N N +E+L HL SE LD+SH R
Sbjct: 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144
Query: 309 QICSMQSLEKLNLSHNNLSGS-IPRCFEEMHWLSCIDISYNALQGLIPNSTAF 360
+ SLE L ++ N+ + +P F E+ L+ +D+S L+ L P TAF
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAF 195
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+ EF E + K+ H +VKFYG CS ++V EY+ G L
Sbjct: 47 EDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCL 90
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
IG G G VYKA+ GE +KK DE + E++ L +++H NIVK Y
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIRLEKEDE-GIPSTTIREISILKELKHSNIVKLYDV 68
Query: 530 CSHALHSFVVYEYLE 544
+V+E+L+
Sbjct: 69 IHTKKRLVLVFEHLD 83
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 464 FDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRN 522
F D IG+G G+VY A+ + E+V +KK Q+ + EV L K+RH N
Sbjct: 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76
Query: 523 IVKFYGFCSHALHSFVVYEY 542
+++ G +++V EY
Sbjct: 77 TIQYRGCYLREHTAWLVMEY 96
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
IG G G VYKA+ GE +KK DE + E++ L +++H NIVK Y
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIRLEKEDE-GIPSTTIREISILKELKHSNIVKLYDV 68
Query: 530 CSHALHSFVVYEYLE 544
+V+E+L+
Sbjct: 69 IHTKKRLVLVFEHLD 83
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
IG G G VYKA+ GE +KK DE + E++ L +++H NIVK Y
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIRLEKEDE-GIPSTTIREISILKELKHSNIVKLYDV 68
Query: 530 CSHALHSFVVYEYLE 544
+V+E+L+
Sbjct: 69 IHTKKRLVLVFEHLD 83
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 464 FDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRN 522
F D IG+G G+VY A+ + E+V +KK Q+ + EV L K+RH N
Sbjct: 56 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 115
Query: 523 IVKFYGFCSHALHSFVVYEY 542
+++ G +++V EY
Sbjct: 116 TIQYRGCYLREHTAWLVMEY 135
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 459 RATNNFDDGHC-----IGNGGQGSVYKAKLP-----TGEIVDVKKFHSPLPDEMACQQEF 508
R F++ H +G G GSV + TGE+V VKK + + ++F
Sbjct: 5 RDPTQFEERHLKFLRQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDF 61
Query: 509 LNEVNALTKIRHRNIVKFYGFCSHALHS--FVVYEYLEMGSL 548
E+ L ++H NIVK+ G C A ++ E+L GSL
Sbjct: 62 EREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYGSL 103
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+++F E LT ++H +IVKFYG C +V+EY++ G L
Sbjct: 59 RKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDL 102
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 178 SNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPE 237
S K S+P + T +VLYL N I P L+ L +L L+NN+L+ +
Sbjct: 25 SGKSLASVPTGIPTTT---QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV 81
Query: 238 LGSLIQLEYLDLSANTFHKSIPE-SLSNLVKLHYLNLSNN 276
L QL L L+ N KSIP + NL L ++ L NN
Sbjct: 82 FDKLTQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNN 120
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 145 TSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSN 204
T+ +LYLY+N + P + L+ LDL +N+L +P + + L L L+ N
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 96
Query: 205 HIVGEIPLG-HGMLSSLIQLTLNNN 228
+ IP G L SL + L NN
Sbjct: 97 QL-KSIPRGAFDNLKSLTHIWLLNN 120
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 87 SSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTS 146
+S+P I + L L +N + P LT L LDL N+L+ F LT
Sbjct: 30 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 147 LSILYLYENSLCDSIPK-EIGNMNSLSILDLSSN 179
L+ L L +N L SIP+ N+ SL+ + L +N
Sbjct: 88 LTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNN 120
Score = 29.3 bits (64), Expect = 6.1, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 245 EYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFRE 304
+ L L N K P L +L L+L NNQ + +KL L++L L+ N +
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 305 EIPSQICSMQSLEKLNLSHN 324
+++SL + L +N
Sbjct: 101 IPRGAFDNLKSLTHIWLLNN 120
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 26/277 (9%)
Query: 121 TNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNK 180
+N+ VL+L+ N+L P +F + L+IL NS+ P+ + L +L+L N+
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 181 LNGSIPLSLANLTNSLKVLYLSSN--HIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPEL 238
L+ + TN L L L SN H + P + +LI+L L++N LS S +L
Sbjct: 85 LSQISDQTFVFCTN-LTELDLMSNSIHKIKSNPFKNQ--KNLIKLDLSHNGLS---STKL 138
Query: 239 GSLIQLEYLDLSANTFHKSIP------ESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHL 292
G+ +QLE L +K + E L N L L+LS+N + P + + L
Sbjct: 139 GTGVQLENLQELLLAKNKILALRSEELEFLGN-SSLRKLDLSSNPLKEFSPGCFQTIGKL 197
Query: 293 SELDLSHNIFREEIPSQIC---SMQSLEKLNLSHNNLSGSIPRCFEEMHW--LSCIDISY 347
L L++ + ++C S S++ L+L++N L + F + W L+ +D+SY
Sbjct: 198 FALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSY 257
Query: 348 NALQGLIPNSTAFRDA-PMLALQGNKRLCGDIKRLPP 383
N L + S ++ + L+L+ N +I+RL P
Sbjct: 258 NNLHDVGNGSFSYLPSLRYLSLEYN-----NIQRLSP 289
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 200 YLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIP 259
+L HI ++P S++ L L +N+L QL LD N+ K P
Sbjct: 13 HLKLTHIPDDLP------SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP 66
Query: 260 ESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKL 319
E L L LNL +N+ SQ +L+ELDL N + + + ++L KL
Sbjct: 67 ELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKL 126
Query: 320 NLSHNNLSGS 329
+LSHN LS +
Sbjct: 127 DLSHNGLSST 136
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 116/291 (39%), Gaps = 54/291 (18%)
Query: 77 AFTGQDWP-------LYSSIPDEIGN-----MKSLSDLQLSENILNGSIPLALGNLTNLV 124
F+G W Y+++ D +GN + SL L L N + P + L+NL
Sbjct: 241 TFSGLKWTNLTQLDLSYNNLHD-VGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLR 299
Query: 125 VLDLSTNKLSGSIPL-SFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNG 183
L L S+ L S N+ S +L E NM+ +I SN G
Sbjct: 300 YLSLKRAFTKQSVSLASHPNIDDFSFQWLKY--------LEYLNMDDNNIPSTKSNTFTG 351
Query: 184 SIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQ 243
+ L +L+ + L +N + L H S L+ L L N +S + L Q
Sbjct: 352 LVSLKYLSLSKTFTSLQTLTNETF--VSLAH---SPLLTLNLTKNHISKIANGTFSWLGQ 406
Query: 244 LEYLDLSANTFHKSIP----ESLSNLVKLH-----YLNLSNNQFS-----QKI------- 282
L LDL N + + L N+ +++ YL LS + F+ Q++
Sbjct: 407 LRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVAL 466
Query: 283 ------PNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLS 327
P+ L +L+ LDLS+N + +++LE L+ HNNL+
Sbjct: 467 KNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 94/239 (39%), Gaps = 48/239 (20%)
Query: 123 LVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKL- 181
L VL+L N+LS +F T+L+ L L NS+ N +L LDLS N L
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Query: 182 --------------------NGSIPLSLANL----TNSLKVLYLSSNHIVGEIPLGHGML 217
N + L L +SL+ L LSSN + P +
Sbjct: 135 STKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTI 194
Query: 218 SSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQ 277
L L LNN QL+P L + E LSN + L+L+NNQ
Sbjct: 195 GKLFALLLNN----AQLNPHLTEKLCWE----------------LSN-TSIQNLSLANNQ 233
Query: 278 FSQKIPNKIE--KLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCF 334
+ K +L++LDLS+N + + SL L+L +NN+ PR F
Sbjct: 234 LLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSF 292
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 258 IPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLE 317
IP+ L + + + LNL++NQ + P + L+ LD N + P ++C + L
Sbjct: 19 IPDDLPSNITV--LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP-ELCQILPLL 75
Query: 318 K-LNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPN 356
K LNL HN LS + F L+ +D+ N++ + N
Sbjct: 76 KVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSN 115
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 61
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEM 545
H NIVK ++V+E+L M
Sbjct: 62 NHPNIVKLLDVIHTENKLYLVFEFLSM 88
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 60
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEM 545
H NIVK ++V+E+L M
Sbjct: 61 NHPNIVKLLDVIHTENKLYLVFEFLSM 87
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 94 GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPL-SFANLTSLSILYL 152
G + L L LS N L S+PL L L VLD+S N+L+ S+PL + L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 153 YENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPL 212
N L P + L L L++N+L +P L N +L L L N + IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Query: 213 G 213
G
Sbjct: 190 G 190
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 3/158 (1%)
Query: 218 SSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQ 277
+ L QL L+ EL+ +L + G+L L LDLS N +S+P L L L++S N+
Sbjct: 55 TRLTQLNLDRCELT-KLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNR 111
Query: 278 FSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEM 337
+ + L L EL L N + P + LEKL+L++N L+ +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 338 HWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRLC 375
L + + N+L + P L GN LC
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 14/158 (8%)
Query: 148 SILYLYEN-----SLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLS 202
+IL+L EN SL +P +L +L+ +++G++P+ L L LS
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------LGTLDLS 85
Query: 203 SNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESL 262
N + +PL L +L L ++ N L+ L L +L+ L L N P L
Sbjct: 86 HNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 263 SNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHN 300
+ KL L+L+NNQ ++ + L +L L L N
Sbjct: 145 TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 62
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEM 545
H NIVK ++V+E+L M
Sbjct: 63 NHPNIVKLLDVIHTENKLYLVFEFLSM 89
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 178 SNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPE 237
S K S+P + T +VLYL N I P L+ L +L L+NN+L+ +
Sbjct: 17 SGKSLASVPTGIPTTT---QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV 73
Query: 238 LGSLIQLEYLDLSANTFHKSIPE-SLSNLVKLHYLNLSNN 276
L QL L L+ N KSIP + NL L ++ L NN
Sbjct: 74 FDKLTQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNN 112
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 145 TSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSN 204
T+ +LYLY+N + P + L+ LDL +N+L +P + + L L L+ N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 88
Query: 205 HIVGEIPLG-HGMLSSLIQLTLNNN 228
+ IP G L SL + L NN
Sbjct: 89 QL-KSIPRGAFDNLKSLTHIWLLNN 112
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 87 SSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTS 146
+S+P I + L L +N + P LT L LDL N+L+ F LT
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 147 LSILYLYENSLCDSIPK-EIGNMNSLSILDLSSN 179
L+ L L +N L SIP+ N+ SL+ + L +N
Sbjct: 80 LTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNN 112
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 245 EYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFRE 304
+ L L N K P L +L L+L NNQ + +KL L++L L+ N +
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 305 EIPSQICSMQSLEKLNLSHN 324
+++SL + L +N
Sbjct: 93 IPRGAFDNLKSLTHIWLLNN 112
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 94 GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPL-SFANLTSLSILYL 152
G + L L LS N L S+PL L L VLD+S N+L+ S+PL + L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 153 YENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPL 212
N L P + L L L++N+L +P L N +L L L N + IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Query: 213 G 213
G
Sbjct: 190 G 190
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 3/158 (1%)
Query: 218 SSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQ 277
+ L QL L+ EL+ +L + G+L L LDLS N +S+P L L L++S N+
Sbjct: 55 TRLTQLNLDRCELT-KLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNR 111
Query: 278 FSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEM 337
+ + L L EL L N + P + LEKL+L++N L+ +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 338 HWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRLC 375
L + + N+L + P L GN LC
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 14/158 (8%)
Query: 148 SILYLYEN-----SLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLS 202
+IL+L EN SL +P +L +L+ +++G++P+ L L LS
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------LGTLDLS 85
Query: 203 SNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESL 262
N + +PL L +L L ++ N L+ L L +L+ L L N P L
Sbjct: 86 HNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 263 SNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHN 300
+ KL L+L+NNQ ++ + L +L L L N
Sbjct: 145 TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 8/160 (5%)
Query: 99 LSDLQLSENI-LNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYEN-- 155
L L LS+N L P L +L L L L P F L +L LYL +N
Sbjct: 81 LEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNL 140
Query: 156 -SLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGH 214
+L D+ +++GN L+ L L N++ S+P +SL L L NH+ P
Sbjct: 141 QALPDNTFRDLGN---LTHLFLHGNRIP-SVPEHAFRGLHSLDRLLLHQNHVARVHPHAF 196
Query: 215 GMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTF 254
L L+ L L N LS + L L L+YL L+ N +
Sbjct: 197 RDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPW 236
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 102/246 (41%), Gaps = 13/246 (5%)
Query: 128 LSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSN-KLNGSIP 186
L N++S SF + +L+IL+L+ N+L + L LDLS N +L P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 187 LSLANLTNSLKVLYLSSNHIVGEIPLGHGM---LSSLIQLTLNNNELSGQLSPELGSLIQ 243
+ L + L L+L G LG G+ L++L L L +N L L
Sbjct: 98 TTFRGLGH-LHTLHLDR---CGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 244 LEYLDLSANTFHKSIPE-SLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIF 302
L +L L N S+PE + L L L L N ++ P+ L L L L N
Sbjct: 154 LTHLFLHGNRI-PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
Query: 303 REEIPSQI-CSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTAFR 361
+P+++ ++SL+ L L+ N R WL S + + +P A R
Sbjct: 213 -SMLPAEVLVPLRSLQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCNLPQRLAGR 270
Query: 362 DAPMLA 367
D LA
Sbjct: 271 DLKRLA 276
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
Query: 215 GMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLS 274
G+ +S ++ L+ N +S + S L L L +N + + L L L+LS
Sbjct: 28 GIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLS 87
Query: 275 NN-QFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRC 333
+N Q P L HL L L +E P + +L+ L L NNL
Sbjct: 88 DNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNT 147
Query: 334 FEEM 337
F ++
Sbjct: 148 FRDL 151
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 62
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLEM 545
H NIVK ++V+E+L M
Sbjct: 63 NHPNIVKLLDVIHTENKLYLVFEFLSM 89
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 178 SNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPE 237
S K S+P + T +VLYL N I P L+ L +L L+NN+L+ +
Sbjct: 17 SGKSLASVPTGIPTTT---QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV 73
Query: 238 LGSLIQLEYLDLSANTFHKSIPE-SLSNLVKLHYLNLSNN 276
L QL L L+ N KSIP + NL L ++ L NN
Sbjct: 74 FDKLTQLTQLSLNDNQL-KSIPRGAFDNLRSLTHIWLLNN 112
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 145 TSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSN 204
T+ +LYLY+N + P + L+ LDL +N+L +P + + L L L+ N
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 88
Query: 205 HIVGEIPLG-HGMLSSLIQLTLNNN 228
+ IP G L SL + L NN
Sbjct: 89 QL-KSIPRGAFDNLRSLTHIWLLNN 112
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 87 SSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTS 146
+S+P I + L L +N + P LT L LDL N+L+ F LT
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 147 LSILYLYENSLCDSIPK-EIGNMNSLSILDLSSN 179
L+ L L +N L SIP+ N+ SL+ + L +N
Sbjct: 80 LTQLSLNDNQL-KSIPRGAFDNLRSLTHIWLLNN 112
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 245 EYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFRE 304
+ L L N K P L +L L+L NNQ + +KL L++L L+ N +
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 305 EIPSQICSMQSLEKLNLSHN 324
+++SL + L +N
Sbjct: 93 IPRGAFDNLRSLTHIWLLNN 112
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 24 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 79
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 80 LGVCTREPPFYIIIEFMTYGNL 101
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 226 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 281
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 282 LGVCTREPPFYIITEFMTYGNL 303
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 94 GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPL-SFANLTSLSILYL 152
G + L L LS N L S+PL L L VLD+S N+L+ S+PL + L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 153 YENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPL 212
N L P + L L L++N+L +P L N +L L L N + IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Query: 213 G 213
G
Sbjct: 190 G 190
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 3/158 (1%)
Query: 218 SSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQ 277
+ L QL L+ EL+ +L + G+L L LDLS N +S+P L L L++S N+
Sbjct: 55 TRLTQLNLDRCELT-KLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNR 111
Query: 278 FSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEM 337
+ + L L EL L N + P + LEKL+L++N L+ +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 338 HWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRLC 375
L + + N+L + P L GN LC
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 14/158 (8%)
Query: 148 SILYLYEN-----SLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLS 202
+IL+L EN SL +P +L +L+ +++G++P+ L L LS
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------LGTLDLS 85
Query: 203 SNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESL 262
N + +PL L +L L ++ N L+ L L +L+ L L N P L
Sbjct: 86 HNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 263 SNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHN 300
+ KL L+L+NNQ ++ + L +L L L N
Sbjct: 145 TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 24 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 79
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 80 LGVCTREPPFYIITEFMTYGNL 101
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 20 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 75
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 76 LGVCTREPPFYIIIEFMTYGNL 97
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 17 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 72
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 73 LGVCTREPPFYIIIEFMTYGNL 94
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 94 GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPL-SFANLTSLSILYL 152
G + L L LS N L S+PL L L VLD+S N+L+ S+PL + L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 153 YENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPL 212
N L P + L L L++N+L +P L N +L L L N + IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Query: 213 G 213
G
Sbjct: 190 G 190
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 3/158 (1%)
Query: 218 SSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQ 277
+ L QL L+ EL+ +L + G+L L LDLS N +S+P L L L++S N+
Sbjct: 55 TRLTQLNLDRCELT-KLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNR 111
Query: 278 FSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEM 337
+ + L L EL L N + P + LEKL+L++N L+ +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 338 HWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRLC 375
L + + N+L + P L GN LC
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 14/158 (8%)
Query: 148 SILYLYEN-----SLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLS 202
+IL+L EN SL +P +L +L+ +++G++P+ L L LS
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------LGTLDLS 85
Query: 203 SNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESL 262
N + +PL L +L L ++ N L+ L L +L+ L L N P L
Sbjct: 86 HNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 263 SNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHN 300
+ KL L+L+NNQ ++ + L +L L L N
Sbjct: 145 TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK D M + EFL E + +I+H N+V+
Sbjct: 20 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVE-EFLKEAAVMKEIKHPNLVQL 75
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 76 LGVCTREPPFYIITEFMTYGNL 97
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 446 LTFDGKIVHEEIIRATNNFDDGHCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMAC 504
L F G +++ + H +G G G VY+ + V VK L ++
Sbjct: 10 LYFQGSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTME 65
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+EFL E + +I+H N+V+ G C+ +++ E++ G+L
Sbjct: 66 VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 109
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 24 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 79
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 80 LGVCTREPPFYIITEFMTYGNL 101
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 24 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 79
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 80 LGVCTREPPFYIITEFMTYGNL 101
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK D M + EFL E + +I+H N+V+
Sbjct: 24 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVE-EFLKEAAVMKEIKHPNLVQL 79
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 80 LGVCTREPPFYIITEFMTYGNL 101
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 74
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 75 LGVCTREPPFYIIIEFMTYGNL 96
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 468 HCIGNGGQGSVYKAKLPT-GEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
+ IG G G K + + G+I+ K+ E A +Q ++EVN L +++H NIV++
Sbjct: 12 YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE-AEKQMLVSEVNLLRELKHPNIVRY 70
Query: 527 YGFCSHALHS--FVVYEYLEMGSLAMNLSNDAAAEQF 561
Y ++ ++V EY E G LA ++ Q+
Sbjct: 71 YDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQY 107
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 74
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 75 LGVCTREPPFYIITEFMTYGNL 96
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 21 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 76
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 77 LGVCTREPPFYIITEFMTYGNL 98
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 74
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 75 LGVCTREPPFYIIIEFMTYGNL 96
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 23 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 78
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 79 LGVCTREPPFYIITEFMTYGNL 100
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 74
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 75 LGVCTREPPFYIITEFMTYGNL 96
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 17 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 72
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 73 LGVCTREPPFYIITEFMTYGNL 94
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 223 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 278
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 279 LGVCTREPPFYIITEFMTYGNL 300
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 74
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 75 LGVCTREPPFYIITEFMTYGNL 96
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 21 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 76
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 77 LGVCTREPPFYIITEFMTYGNL 98
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 74
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 75 LGVCTREPPFYIITEFMTYGNL 96
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 28/201 (13%)
Query: 167 NMNSLSILDLSSNKLNGSIPLSLANL-TNSLKVLYLSSNHIVG------------EIPLG 213
++ SL LDLS N L+ S ++ T SLK L LS N ++ +
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404
Query: 214 HG------------MLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKS-IPE 260
H L +LI L +++ + L LE L ++ N+F ++ +P+
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 261 SLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICS-MQSLEKL 319
+ L L +L+LS Q Q P L L L+++ N + +P I + SL+K+
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKI 523
Query: 320 NLSHNNLSGSIPRCFEEMHWL 340
L N S PR WL
Sbjct: 524 WLHTNPWDCSCPRIDYLSRWL 544
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 67 FEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVL 126
F + VL G + + +PD +++L+ L LS+ L P A +L++L VL
Sbjct: 441 FNGLSSLEVLKMAGNSFQ-ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 127 DLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPK 163
++++N+L F LTSL ++L+ N S P+
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 120 LTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDS-IPKEIGNMNSLSILDLSS 178
L NL+ LD+S + F L+SL +L + NS ++ +P + +L+ LDLS
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 179 NKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLG-HGMLSSLIQLTLNNN 228
+L P + +L+ SL+VL ++SN + +P G L+SL ++ L+ N
Sbjct: 480 CQLEQLSPTAFNSLS-SLQVLNMASNQL-KSVPDGIFDRLTSLQKIWLHTN 528
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 93 IGNMKSLSDLQLSENILNG-SIPLALGNLTNLVVLDLSTNKL 133
IG++K+L +L ++ N++ +P NLTNL LDLS+NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 468 HCIGNGGQGSVYKAKLPT-GEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
+ IG G G K + + G+I+ K+ E A +Q ++EVN L +++H NIV++
Sbjct: 12 YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE-AEKQMLVSEVNLLRELKHPNIVRY 70
Query: 527 YGFCSHALHS--FVVYEYLEMGSLAMNLSNDAAAEQF 561
Y ++ ++V EY E G LA ++ Q+
Sbjct: 71 YDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQY 107
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 21 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 76
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 77 LGVCTREPPFYIITEFMTYGNL 98
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 468 HCIGNGGQGSVYKAKLPT-GEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
+ IG G G K + + G+I+ K+ E A +Q ++EVN L +++H NIV++
Sbjct: 12 YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE-AEKQMLVSEVNLLRELKHPNIVRY 70
Query: 527 YGFCSHALHS--FVVYEYLEMGSLAMNLSNDAAAEQF 561
Y ++ ++V EY E G LA ++ Q+
Sbjct: 71 YDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQY 107
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 7/166 (4%)
Query: 121 TNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCD--SIPKEIGNMNSLSILDLSS 178
++ L+ + N + S+ + L L L L N L + + NM+SL LD+S
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 179 NKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPEL 238
N LN S+ VL LSSN + G + + + L L+NN + + ++
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSV--FRCLPPKVKVLDLHNNRIMS-IPKDV 469
Query: 239 GSLIQLEYLDLSANTFHKSIPESL-SNLVKLHYLNLSNNQFSQKIP 283
L L+ L++++N KS+P+ + L L Y+ L +N + P
Sbjct: 470 THLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 246 YLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQ--KIPNKIEKLIHLSELDLSHNIFR 303
+L+ + N F S+ + S L +L L L N K+ + + L LD+S N
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 304 EEIPSQICSM-QSLEKLNLSHNNLSGSIPRC 333
+ C+ +S+ LNLS N L+GS+ RC
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 94 GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPL-SFANLTSLSILYL 152
G + L L LS N L S+PL L L VLD+S N+L+ S+PL + L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 153 YENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPL 212
N L P + L L L++N L +P L N +L L L N + IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Query: 213 G 213
G
Sbjct: 190 G 190
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 3/158 (1%)
Query: 218 SSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQ 277
+ L QL L+ EL+ +L + G+L L LDLS N +S+P L L L++S N+
Sbjct: 55 TRLTQLNLDRCELT-KLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNR 111
Query: 278 FSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEM 337
+ + L L EL L N + P + LEKL+L++N+L+ +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGL 171
Query: 338 HWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRLC 375
L + + N+L + P L GN LC
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 265 HKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 320
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 321 LGVCTREPPFYIITEFMTYGNL 342
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 11/187 (5%)
Query: 137 IPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNS- 195
+P + L L L N L ++P I ++N L L + + +P LA+ S
Sbjct: 119 LPDTXQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 196 -------LKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLD 248
L+ L L I +P L +L L + N+ LS L P + L +LE LD
Sbjct: 178 EHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235
Query: 249 LSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPS 308
L T ++ P L L L + +P I +L L +LDL + +PS
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295
Query: 309 QICSMQS 315
I + +
Sbjct: 296 LIAQLPA 302
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 82 DWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSF 141
+W S+P I N+++L L++ + L+ P A+ +L L LDL + P F
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIF 249
Query: 142 ANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDL 176
L L L + S ++P +I + L LDL
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839
pdb|2IO6|A Chain A, Wee1 Kinase Complexed With Inhibitor Pd330961
Length = 287
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 459 RATNNFDDGHCIGNGGQGSVYK-AKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTK 517
R T F + IG+G GSV+K K G I +K+ PL + +Q L EV A
Sbjct: 6 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVD-EQNALREVYAHAV 64
Query: 518 I-RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ +H ++V+++ + H + EY GSLA +S +
Sbjct: 65 LGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN 103
>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed
With Inhibitor Pd0407824
Length = 289
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 459 RATNNFDDGHCIGNGGQGSVYK-AKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTK 517
R T F + IG+G GSV+K K G I +K+ PL + +Q L EV A
Sbjct: 8 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVD-EQNALREVYAHAV 66
Query: 518 I-RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ +H ++V+++ + H + EY GSLA +S +
Sbjct: 67 LGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN 105
>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396
pdb|3BIZ|A Chain A, Wee1 Kinase Complex With Inhibitor Pd331618
pdb|3CQE|A Chain A, Wee1 Kinase Complex With Inhibitor Pd074291
pdb|3CR0|A Chain A, Wee1 Kinase Complex With Inhibitor Pd259_809
Length = 287
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 459 RATNNFDDGHCIGNGGQGSVYK-AKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTK 517
R T F + IG+G GSV+K K G I +K+ PL + +Q L EV A
Sbjct: 6 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVD-EQNALREVYAHAV 64
Query: 518 I-RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ +H ++V+++ + H + EY GSLA +S +
Sbjct: 65 LGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN 103
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 94 GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPL-SFANLTSLSILYL 152
G + L L LS N L S+PL L L VLD+S N+L+ S+PL + L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 153 YENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPL 212
N L P + L L L++N L +P L N +L L L N + IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Query: 213 G 213
G
Sbjct: 190 G 190
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 3/158 (1%)
Query: 218 SSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQ 277
+ L QL L+ EL+ +L + G+L L LDLS N +S+P L L L++S N+
Sbjct: 55 TRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNR 111
Query: 278 FSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEM 337
+ + L L EL L N + P + LEKL+L++NNL+ +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 338 HWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRLC 375
L + + N+L + P L GN LC
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 38 HKLGGGQYGEVYVGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 93
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ ++V EY+ G+L
Sbjct: 94 LGVCTLEPPFYIVTEYMPYGNL 115
>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770
Length = 285
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 459 RATNNFDDGHCIGNGGQGSVYK-AKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTK 517
R T F + IG+G GSV+K K G I +K+ PL + +Q L EV A
Sbjct: 4 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVD-EQNALREVYAHAV 62
Query: 518 I-RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ +H ++V+++ + H + EY GSLA +S +
Sbjct: 63 LGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN 101
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 94 GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPL-SFANLTSLSILYL 152
G + L L LS N L S+PL L L VLD+S N+L+ S+PL + L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 153 YENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPL 212
N L P + L L L++N L +P L N +L L L N + IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Query: 213 G 213
G
Sbjct: 190 G 190
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 3/158 (1%)
Query: 218 SSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQ 277
+ L QL L+ EL+ +L + G+L L LDLS N +S+P L L L++S N+
Sbjct: 55 TRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNR 111
Query: 278 FSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEM 337
+ + L L EL L N + P + LEKL+L++NNL+ +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 338 HWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRLC 375
L + + N+L + P L GN LC
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 94 GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPL-SFANLTSLSILYL 152
G + L L LS N L S+PL L L VLD+S N+L+ S+PL + L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 153 YENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPL 212
N L P + L L L++N L +P L N +L L L N + IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Query: 213 G 213
G
Sbjct: 190 G 190
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 3/158 (1%)
Query: 218 SSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQ 277
+ L QL L+ EL+ +L + G+L L LDLS N +S+P L L L++S N+
Sbjct: 55 TRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNR 111
Query: 278 FSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEM 337
+ + L L EL L N + P + LEKL+L++NNL+ +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 338 HWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRLC 375
L + + N+L + P L GN LC
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%)
Query: 218 SSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQ 277
+++ L L +N+L + QL LD+ NT K PE L L LNL +N+
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 278 FSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGS 329
SQ +L+EL L N ++ + ++L L+LSHN LS +
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 118/265 (44%), Gaps = 44/265 (16%)
Query: 121 TNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNK 180
TN+ VL+L+ N+L +F + L+ L + N++ P+ + L +L+L N+
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 181 LNGSIPLSLANLTNSLKVLYLSSNHI--VGEIPLGHGMLSSLIQLTLNNNELSGQLSPEL 238
L+ + A TN L L+L SN I + P +LI L L++N LS S +L
Sbjct: 95 LSQLSDKTFAFCTN-LTELHLMSNSIQKIKNNPFVKQ--KNLITLDLSHNGLS---STKL 148
Query: 239 GSLI------------------QLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQ 280
G+ + + E LD+ AN+ L L LS+NQ +
Sbjct: 149 GTQVQLENLQELLLSNNKIQALKSEELDIFANS-------------SLKKLELSSNQIKE 195
Query: 281 KIPNKIEKLIHLSELDLSHNIFREEIPSQIC---SMQSLEKLNLSHNNLSGSIPRCFEEM 337
P + L L L++ + ++C + S+ L+LS++ LS + F +
Sbjct: 196 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 255
Query: 338 HW--LSCIDISYNALQGLIPNSTAF 360
W L+ +D+SYN L + +S A+
Sbjct: 256 KWTNLTMLDLSYNNLNVVGNDSFAW 280
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 94 GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPL-SFANLTSLSILYL 152
G + L L LS N L S+PL L L VLD+S N+L+ S+PL + L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 153 YENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPL 212
N L P + L L L++N L +P L N +L L L N + IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Query: 213 G 213
G
Sbjct: 190 G 190
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 3/158 (1%)
Query: 218 SSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQ 277
+ L QL L+ EL+ +L + G+L L LDLS N +S+P L L L++S N+
Sbjct: 55 TRLTQLNLDRCELT-KLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNR 111
Query: 278 FSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEM 337
+ + L L EL L N + P + LEKL+L++NNL+ +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 338 HWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRLC 375
L + + N+L + P L GN LC
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 468 HCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKF 526
H +G G G VY+ + V VK L ++ +EFL E + +I+H N+V+
Sbjct: 17 HKLGGGQFGEVYEGVWKKYSLTVAVKT----LKEDTMEVEEFLKEAAVMKEIKHPNLVQL 72
Query: 527 YGFCSHALHSFVVYEYLEMGSL 548
G C+ +++ E++ G+L
Sbjct: 73 LGVCTREPPFYIITEFMTYGNL 94
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%)
Query: 218 SSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQ 277
+++ L L +N+L + QL LD+ NT K PE L L LNL +N+
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 278 FSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGS 329
SQ +L+EL L N ++ + ++L L+LSHN LS +
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 118/252 (46%), Gaps = 18/252 (7%)
Query: 121 TNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNK 180
TN+ VL+L+ N+L +F + L+ L + N++ P+ + L +L+L N+
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 181 LNGSIPLSLANLTNSLKVLYLSSNHI--VGEIPLGHGMLSSLIQLTLNNNELSGQLSPEL 238
L+ + A TN L L+L SN I + P +LI L L++N LS S +L
Sbjct: 85 LSQLSDKTFAFCTN-LTELHLMSNSIQKIKNNPFVKQ--KNLITLDLSHNGLS---STKL 138
Query: 239 GSLI---QLEYLDLSANTFHKSIPESLSNLVK--LHYLNLSNNQFSQKIPNKIEKLIHLS 293
G+ + L+ L LS N E L L L LS+NQ + P + L
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198
Query: 294 ELDLSHNIFREEIPSQIC---SMQSLEKLNLSHNNLSGSIPRCFEEMHW--LSCIDISYN 348
L L++ + ++C + S+ L+LS++ LS + F + W L+ +D+SYN
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258
Query: 349 ALQGLIPNSTAF 360
L + +S A+
Sbjct: 259 NLNVVGNDSFAW 270
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 94 GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPL-SFANLTSLSILYL 152
G + L L LS N L S+PL L L VLD+S N+L+ S+PL + L L LYL
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 132
Query: 153 YENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPL 212
N L P + L L L++N L +P L N +L L L N + IP
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPK 190
Query: 213 G 213
G
Sbjct: 191 G 191
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 3/158 (1%)
Query: 218 SSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQ 277
+ L QL L+ EL+ +L + G+L L LDLS N +S+P L L L++S N+
Sbjct: 56 TRLTQLNLDRCELT-KLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNR 112
Query: 278 FSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEM 337
+ + L L EL L N + P + LEKL+L++NNL+ +
Sbjct: 113 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 172
Query: 338 HWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRLC 375
L + + N+L + P L GN LC
Sbjct: 173 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 210
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 70/175 (40%), Gaps = 16/175 (9%)
Query: 170 SLSILDLSSNKLNGSIPLSLANLTNSLKV--LYLSSNHIVGEIPLGHGMLSSLIQLTLNN 227
S++ LDLS N S+ + K+ L LS+++ +G GH T
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS-SFGHTNFKDPDNFTFKG 271
Query: 228 NELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIE 287
E SG ++ DLS + + S+ L L L+ N+ ++ N
Sbjct: 272 LEASG-----------VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
Query: 288 KLIHLSELDLSHNIFREEIPSQICS-MQSLEKLNLSHNNLSGSIPRCFEEMHWLS 341
L HL EL L N + +P I + SL+K+ L N S PR WL+
Sbjct: 321 GLTHLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 374
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 99 LSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLC 158
L L L++N +N A LT+L L L TN+L F LTSL ++L+ N
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 360
Query: 159 DSIPK 163
S P+
Sbjct: 361 CSCPR 365
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%)
Query: 218 SSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQ 277
+++ L L +N+L + QL LD+ NT K PE L L LNL +N+
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 278 FSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGS 329
SQ +L+EL L N ++ + ++L L+LSHN LS +
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 141
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 118/252 (46%), Gaps = 18/252 (7%)
Query: 121 TNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNK 180
TN+ VL+L+ N+L +F + L+ L + N++ P+ + L +L+L N+
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 181 LNGSIPLSLANLTNSLKVLYLSSNHI--VGEIPLGHGMLSSLIQLTLNNNELSGQLSPEL 238
L+ + A TN L L+L SN I + P +LI L L++N LS S +L
Sbjct: 90 LSQLSDKTFAFCTN-LTELHLMSNSIQKIKNNPFVKQ--KNLITLDLSHNGLS---STKL 143
Query: 239 GSLI---QLEYLDLSANTFHKSIPESLSNLVK--LHYLNLSNNQFSQKIPNKIEKLIHLS 293
G+ + L+ L LS N E L L L LS+NQ + P + L
Sbjct: 144 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 203
Query: 294 ELDLSHNIFREEIPSQIC---SMQSLEKLNLSHNNLSGSIPRCFEEMHW--LSCIDISYN 348
L L++ + ++C + S+ L+LS++ LS + F + W L+ +D+SYN
Sbjct: 204 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 263
Query: 349 ALQGLIPNSTAF 360
L + +S A+
Sbjct: 264 NLNVVGNDSFAW 275
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 217 LSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNN 276
S L +L L LS +L L L L+ L LSAN F S SN L +L++ N
Sbjct: 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
Query: 277 QFSQKIPNK-IEKLIHLSELDLSHNIFREEIPSQICSMQ-----SLEKLNLSHNNLSGSI 330
++ +E L +L ELDLSH+ S C++Q L+ LNLS+N
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIE---TSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392
Query: 331 PRCFEEMHWLSCIDISYNALQ 351
F+E L +D+++ L+
Sbjct: 393 TEAFKECPQLELLDLAFTRLK 413
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 100/219 (45%), Gaps = 22/219 (10%)
Query: 95 NMKSLSDLQLSENILNGS--IPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYL 152
N+++L +L LS + + S L L NL++L L+LS N+ +F L +L L
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407
Query: 153 YENSL-CDSIPKEIGNMNSL-------SILDLSSNKLNGSIPLSLANLTNSLKVLYLSSN 204
L N++ L S+LD+SS +L +P +L+ L L N
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP--------ALQHLNLQGN 459
Query: 205 HI-VGEIPLGHGM--LSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPES 261
H G I + + L L L L+ +LS SL + ++DLS N S E+
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519
Query: 262 LSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHN 300
LS+L + YLNL++N S +P+ + L ++L N
Sbjct: 520 LSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 114/293 (38%), Gaps = 37/293 (12%)
Query: 67 FEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVL 126
FE SV + Q ++ + L +L L+ L +P L L+ L L
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKL 306
Query: 127 DLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIG-----NMNSLSILDLSSNKL 181
LS NK +S +N SL+ L + N+ E+G N+ +L LDLS + +
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNT----KRLELGTGCLENLENLRELDLSHDDI 362
Query: 182 NGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSL 241
S +L L N LS L L L+ NE +
Sbjct: 363 ETSDCCNLQ-LRN----------------------LSHLQSLNLSYNEPLSLKTEAFKEC 399
Query: 242 IQLEYLDLSANTFH-KSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHN 300
QLE LDL+ K NL L LNLS++ + L L L+L N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Query: 301 IFREEIPSQICSMQSLEKLN---LSHNNLSGSIPRCFEEMHWLSCIDISYNAL 350
F + + S+Q+L +L LS +LS F + ++ +D+S+N L
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK + + F N E+ + K+ H
Sbjct: 21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK--------VLQDKRFKNRELQIMRKLDH 72
Query: 521 RNIVKF-YGFCSHALHSFVVY 540
NIV+ Y F S VVY
Sbjct: 73 CNIVRLRYFFYSSGEKKDVVY 93
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
NF IG G G VYKA+ TGE+V +KK E + E++ L ++ H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKELNH 61
Query: 521 RNIVKFYGFCSHALHSFVVYEYL 543
NIVK ++V+E+L
Sbjct: 62 PNIVKLLDVIHTENKLYLVFEFL 84
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 8/107 (7%)
Query: 119 NLTNLVVLDLSTNKLSGSIPLS-FANLTSLSILYLYENSLCDSIPKEI-GNMNSLSILDL 176
+LT L L L+ N+L+ S+PL F +LT L LYL N L S+P + + L L L
Sbjct: 81 DLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRL 138
Query: 177 SSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQL 223
++N+L SIP + +L+ L LS+N + +P HG L +L
Sbjct: 139 NTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVP--HGAFDRLGKL 181
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 7/145 (4%)
Query: 241 LIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHN 300
L +L +L+L N +L +L L L+NNQ + + L L +L L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 301 IFREEIPSQICS-MQSLEKLNLSHNNLSGSIPR-CFEEMHWLSCIDISYNALQGLIPNST 358
+ +PS + + L++L L+ N L SIP F+++ L + +S N LQ +P+
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS-VPHGA 174
Query: 359 AFRDAPM--LALQGNKRLCGDIKRL 381
R + + L GN+ C + L
Sbjct: 175 FDRLGKLQTITLFGNQFDCSRCETL 199
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 88 SIPDEI-GNMKSLSDLQLSENILNGSIPL-ALGNLTNLVVLDLSTNKLSGSIPLSFANLT 145
S+P + + L +L+L+ N L SIP A LTNL L LSTN+L +F L
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179
Query: 146 SLSILYLYEN----SLCDSI 161
L + L+ N S C+++
Sbjct: 180 KLQTITLFGNQFDCSRCETL 199
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 8/107 (7%)
Query: 119 NLTNLVVLDLSTNKLSGSIPLS-FANLTSLSILYLYENSLCDSIPKEI-GNMNSLSILDL 176
+LT L L L+ N+L+ S+PL F +LT L LYL N L S+P + + L L L
Sbjct: 81 DLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRL 138
Query: 177 SSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQL 223
++N+L SIP + +L+ L LS+N + +P HG L +L
Sbjct: 139 NTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVP--HGAFDRLGKL 181
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 7/139 (5%)
Query: 241 LIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHN 300
L +L +L+L N +L +L L L+NNQ + + L L +L L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 301 IFREEIPSQICS-MQSLEKLNLSHNNLSGSIPR-CFEEMHWLSCIDISYNALQGLIPNST 358
+ +PS + + L++L L+ N L SIP F+++ L + +S N LQ +P+
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS-VPHGA 174
Query: 359 AFRDAPM--LALQGNKRLC 375
R + + L GN+ C
Sbjct: 175 FDRLGKLQTITLFGNQFDC 193
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 88 SIPDEI-GNMKSLSDLQLSENILNGSIPL-ALGNLTNLVVLDLSTNKLSGSIPLSFANLT 145
S+P + + L +L+L+ N L SIP A LTNL L LSTN+L +F L
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179
Query: 146 SLSILYLYEN 155
L + L+ N
Sbjct: 180 KLQTITLFGN 189
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
NF IG G G VYKA+ TGE+V +KK E + E++ L ++ H
Sbjct: 10 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKELNH 68
Query: 521 RNIVKFYGFCSHALHSFVVYEYL 543
NIVK ++V+E+L
Sbjct: 69 PNIVKLLDVIHTENKLYLVFEFL 91
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
NF IG G G VYKA+ TGE+V +KK E + E++ L ++ H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKELNH 61
Query: 521 RNIVKFYGFCSHALHSFVVYEYL 543
NIVK ++V+E+L
Sbjct: 62 PNIVKLLDVIHTENKLYLVFEFL 84
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 59
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYL 543
H NIVK ++V+E+L
Sbjct: 60 NHPNIVKLLDVIHTENKLYLVFEFL 84
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 59
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYL 543
H NIVK ++V+E+L
Sbjct: 60 NHPNIVKLLDVIHTENKLYLVFEFL 84
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 60
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYL 543
H NIVK ++V+E+L
Sbjct: 61 NHPNIVKLLDVIHTENKLYLVFEFL 85
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 59
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYL 543
H NIVK ++V+E+L
Sbjct: 60 NHPNIVKLLDVIHTENKLYLVFEFL 84
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
NF IG G G VYKA+ TGE+V +KK E + E++ L ++ H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKELNH 61
Query: 521 RNIVKFYGFCSHALHSFVVYEYL 543
NIVK ++V+E+L
Sbjct: 62 PNIVKLLDVIHTENKLYLVFEFL 84
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
NF IG G G VYKA+ TGE+V +KK E + E++ L ++ H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKELNH 61
Query: 521 RNIVKFYGFCSHALHSFVVYEYL 543
NIVK ++V+E+L
Sbjct: 62 PNIVKLLDVIHTENKLYLVFEFL 84
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
NF IG G G VYKA+ TGE+V +KK E + E++ L ++ H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKELNH 60
Query: 521 RNIVKFYGFCSHALHSFVVYEYL 543
NIVK ++V+E+L
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFL 83
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 120/294 (40%), Gaps = 33/294 (11%)
Query: 66 TFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVV 125
TFE SV + Q + +L L+ LNG +P + + +L
Sbjct: 246 TFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKK 304
Query: 126 LDLSTNKLSGSIPLSFANLTSLSILYLYEN-SLCDSIPKEIGNMNSLSILDLSSNKLNGS 184
L L+ N ++ A+ SL LY+ N D + + + +L LDLS + + S
Sbjct: 305 LVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEAS 364
Query: 185 --IPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLI 242
L L NL + L+ L LS N PLG L Q E
Sbjct: 365 DCCNLQLKNLRH-LQYLNLSYNE-----PLG----------------LEDQAFKECP--- 399
Query: 243 QLEYLDLSANTFHKSIPES-LSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNI 301
QLE LD++ H P S NL L LNLS+ + + L L L+L N
Sbjct: 400 QLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNS 459
Query: 302 FREEIPSQICSMQ---SLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQG 352
F++ S+ +Q SLE L LS NL + F + ++ +D+S+N+L G
Sbjct: 460 FQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
Query: 244 LEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNK-IEKLIHLSELDLSHNIF 302
L+ L L+AN+F + + ++ L L + N + + +EKL +L +LDLSH+
Sbjct: 302 LKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDI 361
Query: 303 REEIPSQICSMQ-----SLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNS 357
S C++Q L+ LNLS+N G + F+E L +D+++ L P+S
Sbjct: 362 E---ASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 92 EIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLS-FANLTSLSIL 150
++ N++ L L LS N G A L +LD++ L P S F NL L +L
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 151 YLYENSLCDSIPKEIGNMNSLSILDLSSNKL-NGSI-PLSLANLTNSLKVLYLSSNHIVG 208
L L S + + L L+L N +GSI +L + SL++L LSS ++
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNL-- 487
Query: 209 EIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKL 268
L+++ G L + +LDLS N+ ++LS+L L
Sbjct: 488 --------------LSIDQQAFHG--------LRNVNHLDLSHNSLTGDSMDALSHLKGL 525
Query: 269 HYLNLSNNQFSQKIPNKIEKLIHLSELDLSHN 300
YLN+++N P+ + L S ++LSHN
Sbjct: 526 -YLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
NF IG G G VYKA+ TGE+V +KK E + E++ L ++ H
Sbjct: 4 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKELNH 62
Query: 521 RNIVKFYGFCSHALHSFVVYEYL 543
NIVK ++V+E+L
Sbjct: 63 PNIVKLLDVIHTENKLYLVFEFL 85
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 59
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYL 543
H NIVK ++V+E+L
Sbjct: 60 NHPNIVKLLDVIHTENKLYLVFEFL 84
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
NF IG G G VYKA+ TGE+V +KK E + E++ L ++ H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKELNH 60
Query: 521 RNIVKFYGFCSHALHSFVVYEYL 543
NIVK ++V+E+L
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFL 83
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
NF IG G G VYKA+ TGE+V +KK E + E++ L ++ H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKELNH 60
Query: 521 RNIVKFYGFCSHALHSFVVYEYL 543
NIVK ++V+E+L
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFL 83
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 62
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYL 543
H NIVK ++V+E+L
Sbjct: 63 NHPNIVKLLDVIHTENKLYLVFEFL 87
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 61
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYL 543
H NIVK ++V+E+L
Sbjct: 62 NHPNIVKLLDVIHTENKLYLVFEFL 86
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 59
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYL 543
H NIVK ++V+E+L
Sbjct: 60 NHPNIVKLLDVIHTENKLYLVFEFL 84
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 60
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYL 543
H NIVK ++V+E+L
Sbjct: 61 NHPNIVKLLDVIHTENKLYLVFEFL 85
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 5 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 63
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYL 543
H NIVK ++V+E+L
Sbjct: 64 NHPNIVKLLDVIHTENKLYLVFEFL 88
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
NF IG G G VYKA+ TGE+V +KK E + E++ L ++ H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKELNH 60
Query: 521 RNIVKFYGFCSHALHSFVVYEYL 543
NIVK ++V+E+L
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFL 83
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 61
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYL 543
H NIVK ++V+E+L
Sbjct: 62 NHPNIVKLLDVIHTENKLYLVFEFL 86
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 61
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYL 543
H NIVK ++V+E+L
Sbjct: 62 NHPNIVKLLDVIHTENKLYLVFEFL 86
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 62
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYL 543
H NIVK ++V+E+L
Sbjct: 63 NHPNIVKLLDVIHTENKLYLVFEFL 87
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
NF IG G G VYKA+ TGE+V +KK E + E++ L ++ H
Sbjct: 7 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKELNH 65
Query: 521 RNIVKFYGFCSHALHSFVVYEYL 543
NIVK ++V+E+L
Sbjct: 66 PNIVKLLDVIHTENKLYLVFEFL 88
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
NF IG G G VYKA+ TGE+V +KK E + E++ L ++ H
Sbjct: 10 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKELNH 68
Query: 521 RNIVKFYGFCSHALHSFVVYEYL 543
NIVK ++V+E+L
Sbjct: 69 PNIVKLLDVIHTENKLYLVFEFL 91
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
NF IG G G VYKA+ TGE+V +KK E + E++ L ++ H
Sbjct: 6 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKELNH 64
Query: 521 RNIVKFYGFCSHALHSFVVYEYL 543
NIVK ++V+E+L
Sbjct: 65 PNIVKLLDVIHTENKLYLVFEFL 87
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKK--FHSPLPDEMACQQEFLNEVNALTKIR 519
++FD G +G G G+VY A+ + + K F S L E + + E+ + +R
Sbjct: 15 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKE-GVEHQLRREIEIQSHLR 73
Query: 520 HRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQ 560
H NI++ Y + +++ E+ G L L ++
Sbjct: 74 HPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDE 114
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKK--FHSPLPDEMACQQEFLNEVNALTKIR 519
++FD G +G G G+VY A+ + + K F S L E + + E+ + +R
Sbjct: 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKE-GVEHQLRREIEIQSHLR 72
Query: 520 HRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQ 560
H NI++ Y + +++ E+ G L L ++
Sbjct: 73 HPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDE 113
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 93 IGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYL 152
I ++S+ L L+ + PLA L+NL VL L N+++ PL A LT+L L +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISPL--AGLTNLQYLSI 158
Query: 153 YENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPL 212
+ D P + N++ L+ L NK++ P LA+L N ++V +L +N I PL
Sbjct: 159 GNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEV-HLKNNQISDVSPL 213
Query: 213 GHGMLSSLIQLTLNNNELSGQ 233
+ S+L +TL N ++ Q
Sbjct: 214 AN--TSNLFIVTLTNQTITNQ 232
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
NF IG G G VYKA+ TGE+V +KK E + E++ L ++ H
Sbjct: 4 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKELNH 62
Query: 521 RNIVKFYGFCSHALHSFVVYEYL 543
NIVK ++V+E+L
Sbjct: 63 PNIVKLLDVIHTENKLYLVFEFL 85
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 183 GSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLI 242
S+P A + + L+L++N I P L +L QL N+N+L+ + L
Sbjct: 25 ASVP---AGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81
Query: 243 QLEYLDLSANTFHKSIPE-SLSNLVKLHYLNLSNN 276
QL LDL+ N KSIP + NL L ++ L NN
Sbjct: 82 QLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNN 115
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 90 PDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPL-SFANLTSLS 148
P ++ +L L + N L LT L LDL+ N L SIP +F NL SL+
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLT 108
Query: 149 ILYLYEN 155
+YLY N
Sbjct: 109 HIYLYNN 115
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 106 ENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEI 165
+NI S+P + T+ L L+ N+++ P F +L +L LY N L +IP +
Sbjct: 20 QNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGV 76
Query: 166 -GNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSN 204
+ L+ LDL+ N L SIP + SL +YL +N
Sbjct: 77 FDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 249 LSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPS 308
L+ N K P +LV L L ++N+ + +KL L++LDL+ N +
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99
Query: 309 QICSMQSLEKLNLSHN 324
+++SL + L +N
Sbjct: 100 AFDNLKSLTHIYLYNN 115
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 467 GHCIGNGGQGSVYKA-----KLPTG-EIVDVKKF-HSPLPDEMACQQEFLNEVNALTKIR 519
G +G G G V KA K G V VK + P E+ ++ L+E N L ++
Sbjct: 28 GKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSEL---RDLLSEFNVLKQVN 84
Query: 520 HRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
H +++K YG CS ++ EY + GSL
Sbjct: 85 HPHVIKLYGACSQDGPLLLIVEYAKYGSL 113
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 467 GHCIGNGGQGSVYKA-----KLPTG-EIVDVKKF-HSPLPDEMACQQEFLNEVNALTKIR 519
G +G G G V KA K G V VK + P E+ ++ L+E N L ++
Sbjct: 28 GKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSEL---RDLLSEFNVLKQVN 84
Query: 520 HRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
H +++K YG CS ++ EY + GSL
Sbjct: 85 HPHVIKLYGACSQDGPLLLIVEYAKYGSL 113
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 467 GHCIGNGGQGSVYKA-----KLPTG-EIVDVKKF-HSPLPDEMACQQEFLNEVNALTKIR 519
G +G G G V KA K G V VK + P E+ ++ L+E N L ++
Sbjct: 28 GKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSEL---RDLLSEFNVLKQVN 84
Query: 520 HRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
H +++K YG CS ++ EY + GSL
Sbjct: 85 HPHVIKLYGACSQDGPLLLIVEYAKYGSL 113
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP------TGEIVDVKKFHSPLPDEMACQQEFLNEVNAL 515
NN + IG G G V++A+ P +V VK +M Q +F E +
Sbjct: 47 NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADM--QADFQREAALM 104
Query: 516 TKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+ + NIVK G C+ +++EY+ G L
Sbjct: 105 AEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDL 137
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 90 PDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSI 149
P + N+ SL LS N LN A + NL LDLS+N L F++L +L +
Sbjct: 60 PTRLTNLHSL---LLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116
Query: 150 LYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSL---ANLTNSLKVLYLSSNHI 206
L LY N + +M L L LS N++ P+ L N L +L LSSN +
Sbjct: 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKL 175
Query: 207 VGEIPL 212
++PL
Sbjct: 176 -KKLPL 180
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%)
Query: 217 LSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNN 276
L++L L L++N L+ S + L YLDLS+N H S+L L L L NN
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 277 QFSQKIPNKIEKLIHLSELDLSHN 300
N E + L +L LS N
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQN 146
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 11/133 (8%)
Query: 93 IGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYL 152
I ++S+ L L+ + PLA L+NL VL L N+++ PL A LT+L L +
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISPL--AGLTNLQYLSI 164
Query: 153 YENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPL 212
N + D P + N++ L+ L NK++ P LA+L N ++V +L N I PL
Sbjct: 165 GNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEV-HLKDNQISDVSPL 219
Query: 213 GHGMLSSLIQLTL 225
+ LS+L +TL
Sbjct: 220 AN--LSNLFIVTL 230
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 85/212 (40%), Gaps = 61/212 (28%)
Query: 120 LTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSN 179
L NL+ L+L N+++ PL NLT ++ L L N L + I + S+ LDL+S
Sbjct: 68 LNNLIGLELKDNQITDLTPLK--NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 123
Query: 180 KLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELG 239
++ PL A L+N L+VLYL N I +SP
Sbjct: 124 QITDVTPL--AGLSN-LQVLYLDLNQIT-------------------------NISP--- 152
Query: 240 SLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSH 299
L+ L L YL++ NNQ + P + L L+ L
Sbjct: 153 ----------------------LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADD 188
Query: 300 NIFREEIPSQICSMQSLEKLNLSHNNLSGSIP 331
N + P + S+ +L +++L N +S P
Sbjct: 189 NKISDISP--LASLPNLIEVHLKDNQISDVSP 218
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 470 IGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFY 527
+GNG G VYK + + TG++ +K +E +E E+N L K HRNI +Y
Sbjct: 32 VGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEE----EEIKQEINMLKKYSHHRNIATYY 87
Query: 528 G 528
G
Sbjct: 88 G 88
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 467 GHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVK 525
G +G G G K TGE++ +K+ + + Q+ FL EV + + H N++K
Sbjct: 15 GEVLGKGCFGQAIKVTHRETGEVMVMKEL---IRFDEETQRTFLKEVKVMRCLEHPNVLK 71
Query: 526 FYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAIK 571
F G + EY++ G+L + + Q+ W++R++ K
Sbjct: 72 FIGVLYKDKRLNFITEYIKGGTLRGIIK--SMDSQYPWSQRVSFAK 115
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518
+ NF IG G G VYKA+ TGE+V +KK E + E++ L ++
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKEL 62
Query: 519 RHRNIVKFYGFCSHALHSFVVYEYLE 544
H NIVK ++V+E+++
Sbjct: 63 NHPNIVKLLDVIHTENKLYLVFEHVD 88
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 33/85 (38%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
IG GG G VY+A E+ H P D + E ++H NI+ G
Sbjct: 15 IGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGV 74
Query: 530 CSHALHSFVVYEYLEMGSLAMNLSN 554
C + +V E+ G L LS
Sbjct: 75 CLKEPNLCLVMEFARGGPLNRVLSG 99
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKF---HSPLPDEMACQ-QEFLNEVNA 514
A N + IG GG G V+K +L + +V +K S EM + QEF EV
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDA 556
++ + H NIVK YG + +V E++ G L L + A
Sbjct: 77 MSNLNHPNIVKLYGLMHNPPR--MVMEFVPCGDLYHRLLDKA 116
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
+G G G VYKAK G IV +K+ DE + E++ L ++ H NIV
Sbjct: 29 VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDE-GIPSTAIREISLLKELHHPNIVSLIDV 87
Query: 530 CSHALHSFVVYEYLE 544
+V+E++E
Sbjct: 88 IHSERCLTLVFEFME 102
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
+G G G VYKAK G IV +K+ DE + E++ L ++ H NIV
Sbjct: 29 VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDE-GIPSTAIREISLLKELHHPNIVSLIDV 87
Query: 530 CSHALHSFVVYEYLE 544
+V+E++E
Sbjct: 88 IHSERCLTLVFEFME 102
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKF---HSPLPDEMACQ-QEFLNEVNA 514
A N + IG GG G V+K +L + +V +K S EM + QEF EV
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDA 556
++ + H NIVK YG + +V E++ G L L + A
Sbjct: 77 MSNLNHPNIVKLYGLMHNPPR--MVMEFVPCGDLYHRLLDKA 116
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKF---HSPLPDEMACQ-QEFLNEVNA 514
A N + IG GG G V+K +L + +V +K S EM + QEF EV
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDA 556
++ + H NIVK YG + +V E++ G L L + A
Sbjct: 77 MSNLNHPNIVKLYGLMHNPPR--MVMEFVPCGDLYHRLLDKA 116
>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
Complex With Amp
Length = 329
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 470 IGNGGQGSVYKA-KLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYG 528
+G G G VYKA T E V +K+ +E + EV+ L +++HRNI++
Sbjct: 42 LGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEE-GVPGTAIREVSLLKELQHRNIIELKS 100
Query: 529 FCSHALHSFVVYEYLE 544
H +++EY E
Sbjct: 101 VIHHNHRLHLIFEYAE 116
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 470 IGNGGQGSVYKAKLPTG----EI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G VYK L T E+ V +K + ++ + +FL E + + H NI+
Sbjct: 52 IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQ--RVDFLGEAGIMGQFSHHNII 109
Query: 525 KFYGFCSHALHSFVVYEYLEMGSL 548
+ G S ++ EY+E G+L
Sbjct: 110 RLEGVISKYKPMMIITEYMENGAL 133
>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor
pdb|4EWH|A Chain A, Co-Crystal Structure Of Ack1 With Inhibitor
Length = 275
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 470 IGNGGQGSVYKAKL--PTGEIVDV--KKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVK 525
+G+G G V + + P+G+ V V K + + +F+ EVNA+ + HRN+++
Sbjct: 16 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 75
Query: 526 FYG 528
YG
Sbjct: 76 LYG 78
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 470 IGNGGQGSVYKAKL--PTGEIVDV--KKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVK 525
+G+G G V + + P+G+ V V K + + +F+ EVNA+ + HRN+++
Sbjct: 16 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 75
Query: 526 FYG 528
YG
Sbjct: 76 LYG 78
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 16/114 (14%)
Query: 435 SPRNTLGLLSVLTFDGK-----IVHEEIIRATNNFDDGHCIGNGGQGSVYKAKLPTGEI- 488
P L LLS +F K I +E + G IG G G VY + GE+
Sbjct: 1 GPEMNLSLLSARSFPRKASQTSIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRW-HGEVA 59
Query: 489 ---VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539
+D+++ D + F EV A + RH N+V F G C H ++
Sbjct: 60 IRLIDIER------DNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAII 107
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 470 IGNGGQGSVYKAKL--PTGEIVDV--KKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVK 525
+G+G G V + + P+G+ V V K + + +F+ EVNA+ + HRN+++
Sbjct: 20 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 79
Query: 526 FYG 528
YG
Sbjct: 80 LYG 82
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 470 IGNGGQGSVYKAKL--PTGEIVDV--KKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVK 525
+G+G G V + + P+G+ V V K + + +F+ EVNA+ + HRN+++
Sbjct: 20 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 79
Query: 526 FYG 528
YG
Sbjct: 80 LYG 82
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 470 IGNGGQGSVYKAKL--PTGEIVDV--KKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVK 525
+G+G G V + + P+G+ V V K + + +F+ EVNA+ + HRN+++
Sbjct: 16 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 75
Query: 526 FYG 528
YG
Sbjct: 76 LYG 78
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
+G G G V+ V VK P M+ Q FL E N + ++H +V+ Y
Sbjct: 21 LGAGQFGEVWMGYYNNSTKVAVKTLK---PGTMSVQA-FLEEANLMKTLQHDKLVRLYAV 76
Query: 530 CSHALHSFVVYEYLEMGSLAMNLSNDAAAE 559
+ +++ EY+ GSL L +D +
Sbjct: 77 VTREEPIYIITEYMAKGSLLDFLKSDEGGK 106
>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 470 IGNGGQGSVYKAKL--PTGEIVDV--KKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVK 525
+G+G G V + + P+G+ V V K + + +F+ EVNA+ + HRN+++
Sbjct: 26 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 85
Query: 526 FYG 528
YG
Sbjct: 86 LYG 88
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 470 IGNGGQGSVYKAKL--PTGEIVDV--KKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVK 525
+G+G G V + + P+G+ V V K + + +F+ EVNA+ + HRN+++
Sbjct: 26 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 85
Query: 526 FYG 528
YG
Sbjct: 86 LYG 88
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK + + F N E+ + K+ H
Sbjct: 22 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK--------VLQDKRFKNRELQIMRKLDH 73
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 74 CNIVRLRYF 82
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK L D + F N E+ + K+ H
Sbjct: 33 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV---LQD-----KRFKNRELQIMRKLDH 84
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 85 CNIVRLRYF 93
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK L D + F N E+ + K+ H
Sbjct: 26 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV---LQD-----KRFKNRELQIMRKLDH 77
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 78 CNIVRLRYF 86
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
NF IG G G VYKA+ TGE+V +KK E + E++ L ++ H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKELNH 60
Query: 521 RNIVKFYGFCSHALHSFVVYEYL 543
NIVK ++V+E++
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEHV 83
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK + + F N E+ + K+ H
Sbjct: 21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK--------VLQDKRFKNRELQIMRKLDH 72
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 73 CNIVRLRYF 81
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK + + F N E+ + K+ H
Sbjct: 21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK--------VLQDKRFKNRELQIMRKLDH 72
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 73 CNIVRLRYF 81
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK + + F N E+ + K+ H
Sbjct: 40 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK--------VLQDKRFKNRELQIMRKLDH 91
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 92 CNIVRLRYF 100
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQ--EFLNEVNALTKIRHRNIVKFY 527
IG+G G V +L DV L +Q +FL+E + + + H NI++
Sbjct: 57 IGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLE 116
Query: 528 GFCSHALHSFVVYEYLEMGSL 548
G + + +V EY+E GSL
Sbjct: 117 GVVTRGRLAMIVTEYMENGSL 137
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK + + F N E+ + K+ H
Sbjct: 21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK--------VLQDKRFKNRELQIMRKLDH 72
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 73 CNIVRLRYF 81
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK + + F N E+ + K+ H
Sbjct: 34 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK--------VLQDKRFKNRELQIMRKLDH 85
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 86 CNIVRLRYF 94
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK + + F N E+ + K+ H
Sbjct: 25 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK--------VLQDKRFKNRELQIMRKLDH 76
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 77 CNIVRLRYF 85
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK L D + F N E+ + K+ H
Sbjct: 49 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV---LQD-----KRFKNRELQIMRKLDH 100
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 101 CNIVRLRYF 109
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK L D + F N E+ + K+ H
Sbjct: 55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV---LQD-----KRFKNRELQIMRKLDH 106
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 107 CNIVRLRYF 115
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK + + F N E+ + K+ H
Sbjct: 29 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK--------VLQDKRFKNRELQIMRKLDH 80
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 81 CNIVRLRYF 89
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK + + F N E+ + K+ H
Sbjct: 33 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK--------VLQDKRFKNRELQIMRKLDH 84
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 85 CNIVRLRYF 93
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQ--EFLNEVNALTKIRHRNIVKFY 527
IG+G G V +L DV L +Q +FL+E + + + H NI++
Sbjct: 57 IGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLE 116
Query: 528 GFCSHALHSFVVYEYLEMGSL 548
G + + +V EY+E GSL
Sbjct: 117 GVVTRGRLAMIVTEYMENGSL 137
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK L D + F N E+ + K+ H
Sbjct: 55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV---LQD-----KRFKNRELQIMRKLDH 106
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 107 CNIVRLRYF 115
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK L D + F N E+ + K+ H
Sbjct: 100 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV---LQD-----KRFKNRELQIMRKLDH 151
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 152 CNIVRLRYF 160
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 22/112 (19%)
Query: 428 GSQTQQSSPRNTLGL---------LSVLTFDGKIVHEEIIRATNNFDDGHCIGNGGQGSV 478
GS T ++P N + L + VL DGK + I TN IGNG G V
Sbjct: 1 GSFTMSNAPLNGVKLNPLDDPNKVIKVLASDGKTGEQREIAYTN----CKVIGNGSFGVV 56
Query: 479 YKAKLPTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRHRNIVKFYGF 529
++AKL + V +KK + + F N E+ + ++H N+V F
Sbjct: 57 FQAKLVESDEVAIKK--------VLQDKRFKNRELQIMRIVKHPNVVDLKAF 100
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK L D + F N E+ + K+ H
Sbjct: 57 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV---LQD-----KRFKNRELQIMRKLDH 108
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 109 CNIVRLRYF 117
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK L D + F N E+ + K+ H
Sbjct: 59 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV---LQD-----KRFKNRELQIMRKLDH 110
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 111 CNIVRLRYF 119
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+ EF+ E + + H +V+ YG C+ F++ EY+ G L
Sbjct: 63 EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCL 106
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
NF IG G G VYKA+ TGE+V + K E + E++ L ++ H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETE-GVPSTAIREISLLKELNH 61
Query: 521 RNIVKFYGFCSHALHSFVVYEYL 543
NIVK ++V+E+L
Sbjct: 62 PNIVKLLDVIHTENKLYLVFEFL 84
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
NF IG G G VYKA+ TGE+V + K E + E++ L ++ H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETE-GVPSTAIREISLLKELNH 60
Query: 521 RNIVKFYGFCSHALHSFVVYEYL 543
NIVK ++V+E+L
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFL 83
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 470 IGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYG 528
IG G G V+K + TG+IV +KKF D+ ++ L E+ L +++H N+V
Sbjct: 11 IGEGSYGVVFKCRNRDTGQIVAIKKFLES-EDDPVIKKIALREIRMLKQLKHPNLVNLLE 69
Query: 529 FCSHALHSFVVYEYLE 544
+V+EY +
Sbjct: 70 VFRRKRRLHLVFEYCD 85
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+ EF+ E + + H +V+ YG C+ F++ EY+ G L
Sbjct: 63 EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCL 106
>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3Q4T|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3SOC|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|3SOC|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|4ASX|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
pdb|4ASX|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
Length = 322
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 471 GNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYG 528
G G V+KA+L E V VK F P+ D+ + Q E+ EV +L ++H NI++F G
Sbjct: 33 ARGRFGCVWKAQL-LNEYVAVKIF--PIQDKQSWQNEY--EVYSLPGMKHENILQFIG 85
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+ EF+ E + + H +V+ YG C+ F++ EY+ G L
Sbjct: 48 EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCL 91
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
IG+G G V+ + V +K E ++F+ E + K+ H +V+ YG
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE----EDFIEEAEVMMKLSHPKLVQLYGV 70
Query: 530 CSHALHSFVVYEYLEMGSLA 549
C +V+E++E G L+
Sbjct: 71 CLEQAPICLVFEFMEHGCLS 90
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 58/147 (39%), Gaps = 2/147 (1%)
Query: 196 LKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFH 255
+K LS + I + + L QLTL NE++ L L L+LS N
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 256 KSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICS-MQ 314
NL KL L+LS N L +L EL L N + +P I +
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLT 395
Query: 315 SLEKLNLSHNNLSGSIPRCFEEMHWLS 341
SL+K+ L N S PR WL+
Sbjct: 396 SLQKIWLHTNPWDCSCPRIDYLSRWLN 422
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 68/177 (38%), Gaps = 17/177 (9%)
Query: 170 SLSILDLSSNKLNGSIPLSLANLTNSLKV--LYLSSNHIVGEIPLGHGMLSSLIQLTLNN 227
S++ LDLS N S+ + K+ L LS+++ +G GH T
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS-SFGHTNFKDPDNFTFKG 271
Query: 228 NELSGQLSPELGS-------------LIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLS 274
E SG + +L LE L L+ N +K + L L LNLS
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331
Query: 275 NNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIP 331
N E L L LDLS+N R + +L++L L N L S+P
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVP 387
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 99 LSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLC 158
L L L++N +N A LT+L+ L+LS N L F NL L +L L N +
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 159 DSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSN 204
+ + +L L L +N+L S+P + + SL+ ++L +N
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 102 LQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSI 161
L LS+N L NL L VLDLS N + SF L +L L L N L S+
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-KSV 386
Query: 162 PKEI-GNMNSLSILDLSSNKLNGSIP 186
P I + SL + L +N + S P
Sbjct: 387 PDGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+ EF+ E + + H +V+ YG C+ F++ EY+ G L
Sbjct: 47 EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCL 90
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+ EF+ E + + H +V+ YG C+ F++ EY+ G L
Sbjct: 43 EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCL 86
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+ EF+ E + + H +V+ YG C+ F++ EY+ G L
Sbjct: 54 EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCL 97
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
IG+G G V+ + V +K E ++F+ E + K+ H +V+ YG
Sbjct: 13 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE----EDFIEEAEVMMKLSHPKLVQLYGV 68
Query: 530 CSHALHSFVVYEYLEMGSLA 549
C +V+E++E G L+
Sbjct: 69 CLEQAPICLVFEFMEHGCLS 88
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
IG+G G V+ + V +K E ++F+ E + K+ H +V+ YG
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE----EDFIEEAEVMMKLSHPKLVQLYGV 70
Query: 530 CSHALHSFVVYEYLEMGSLA 549
C +V+E++E G L+
Sbjct: 71 CLEQAPICLVFEFMEHGCLS 90
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+ EF+ E + + H +V+ YG C+ F++ EY+ G L
Sbjct: 48 EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCL 91
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
IG+G G V+ + V +K E ++F+ E + K+ H +V+ YG
Sbjct: 18 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE----EDFIEEAEVMMKLSHPKLVQLYGV 73
Query: 530 CSHALHSFVVYEYLEMGSLA 549
C +V+E++E G L+
Sbjct: 74 CLEQAPICLVFEFMEHGCLS 93
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK + + F N E+ + K+ H
Sbjct: 21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK--------VLQGKAFKNRELQIMRKLDH 72
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 73 CNIVRLRYF 81
>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 292
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 470 IGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYG 528
IG G G+V+KAK T EIV +K+ DE L E+ L +++H+NIV+ +
Sbjct: 10 IGEGTYGTVFKAKNRETHEIVALKRVRLDDDDE-GVPSSALREICLLKELKHKNIVRLHD 68
Query: 529 FCSHALHSFVVYEYLE 544
+V+E+ +
Sbjct: 69 VLHSDKKLTLVFEFCD 84
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK + + F N E+ + K+ H
Sbjct: 21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK--------VLQGKAFKNRELQIMRKLDH 72
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 73 CNIVRLRYF 81
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 463 NFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLN-EVNALTKIRH 520
++ D IGNG G VY+AKL +GE+V +KK + + F N E+ + K+ H
Sbjct: 21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK--------VLQGKAFKNRELQIMRKLDH 72
Query: 521 RNIVKFYGF 529
NIV+ F
Sbjct: 73 CNIVRLRYF 81
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 470 IGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQE--FLNEVNALTKIRHR 521
+G+G G VY+ ++ P+ V VK LP+ + Q E FL E ++K+ H+
Sbjct: 39 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKT----LPEVCSEQDELDFLMEALIISKLNHQ 94
Query: 522 NIVKFYGFCSHALHSFVVYEYLEMGSL 548
NIV+ G +L F++ E + G L
Sbjct: 95 NIVRCIGVSLQSLPRFILLELMAGGDL 121
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Query: 174 LDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHI--VGEIPLGHGMLSSLIQLTLNNNELS 231
LD S+N L ++ + +LT L+ L L N + + +I + SL QL ++ N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 232 -GQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLI 290
+ + L L++S+N +I L +K+ L+L +N+ + IP ++ KL
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV--LDLHSNKI-KSIPKQVVKLE 444
Query: 291 HLSELDLSHNIFREEIPSQICS-MQSLEKLNLSHNNLSGSIPRCFEEMHWL 340
L EL+++ N + +P I + SL+K+ L N S PR WL
Sbjct: 445 ALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 494
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 80/183 (43%), Gaps = 14/183 (7%)
Query: 102 LQLSENILNGSIPLALGNLTNLVVLDLSTNKLS--GSIPLSFANLTSLSILYLYENSLC- 158
L S N+L ++ G+LT L L L N+L I + SL L + +NS+
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 159 DSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLS 218
D + SL L++SSN L +I L +KVL L SN I IP L
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTI---FRCLPPRIKVLDLHSNKI-KSIPKQVVKLE 444
Query: 219 SLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQF 278
+L +L + +N+L L L+ + L N + S P ++ YL+ N+
Sbjct: 445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-------RIDYLSRWLNKN 497
Query: 279 SQK 281
SQK
Sbjct: 498 SQK 500
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 31/185 (16%)
Query: 126 LDLSTNKLSGSIPLSFANLTSLSILYLYENSLCD--SIPKEIGNMNSLSILDLSSNKLNG 183
LD S N L+ ++ + +LT L L L N L + I + M SL LD+S N ++
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 184 SIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQ 243
+ T SL L +SSN + I L P +
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTI--------------------FRCLPP------R 422
Query: 244 LEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKI-EKLIHLSELDLSHNIF 302
++ LDL +N KSIP+ + L L LN+++NQ + +P+ I ++L L ++ L N +
Sbjct: 423 IKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPW 480
Query: 303 REEIP 307
P
Sbjct: 481 DCSCP 485
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 123 LVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIP--KEIGNMNSLSILDLSSNK 180
L LDLS NKL + +S +L L L N+ D++P KE GNM+ L L LS+
Sbjct: 71 LEYLDLSHNKL---VKISCHPTVNLKHLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTH 126
Query: 181 LNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLG 213
L S L +A+L S +L L + E P G
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG 159
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 258 IPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLE 317
+P+ LS K LN+S N S+ + I L L L +SHN + S Q LE
Sbjct: 15 VPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72
Query: 318 KLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQG 370
L+LSHN L C ++ L +D+S+NA L P F + L G
Sbjct: 73 YLDLSHNKLVK--ISCHPTVN-LKHLDLSFNAFDAL-PICKEFGNMSQLKFLG 121
>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNG|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNL|A Chain A, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|1UNL|B Chain B, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|3O0G|A Chain A, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
pdb|3O0G|B Chain B, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
Length = 292
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 470 IGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYG 528
IG G G+V+KAK T EIV +K+ DE L E+ L +++H+NIV+ +
Sbjct: 10 IGEGTYGTVFKAKNRETHEIVALKRVRLDDDDE-GVPSSALREICLLKELKHKNIVRLHD 68
Query: 529 FCSHALHSFVVYEYLE 544
+V+E+ +
Sbjct: 69 VLHSDKKLTLVFEFCD 84
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLPTGE-IVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH 520
++F+ G +G G G+VY A+ IV +K ++ + + E+ + H
Sbjct: 23 DDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLHH 82
Query: 521 RNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQ 560
NI++ Y + +++ EY G L L ++
Sbjct: 83 PNILRLYNYFYDRRRIYLILEYAPRGELYKELQKSCTFDE 122
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 93 IGNMKSLSDLQLSENILNG-SIPLALGNLTNLVVLDLSTNKL 133
IG++K+L +L ++ N++ +P NLTNL LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 101/225 (44%), Gaps = 17/225 (7%)
Query: 126 LDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLS---ILDLSSNKLN 182
LDLS N L SF + L +L L S C+ E G SLS L L+ N +
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDL---SRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 90
Query: 183 GSIPLSLANLTNSLKVLYLSSNHIVGE-IPLGHGMLSSLIQLTLNNNELSGQLSPE-LGS 240
+ + L++ K++ + +N E P+GH L +L +L + +N + PE +
Sbjct: 91 SLALGAFSGLSSLQKLVAVETNLASLENFPIGH--LKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 241 LIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIE----KLIHLSELD 296
L LE+LDLS+N L L ++ LNLS + + N I+ K I L EL
Sbjct: 149 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELA 207
Query: 297 LSHNIFREEIPSQICS-MQSLEKLNLSHNNLSGSIPRCFEEMHWL 340
L N + +P I + SL+K+ L N S PR WL
Sbjct: 208 LDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 251
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 93 IGNMKSLSDLQLSENILNG-SIPLALGNLTNLVVLDLSTNKL 133
IG++K+L +L ++ N++ +P NLTNL LDLS+NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 101/225 (44%), Gaps = 17/225 (7%)
Query: 126 LDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLS---ILDLSSNKLN 182
LDLS N L SF + L +L L S C+ E G SLS L L+ N +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDL---SRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 183 GSIPLSLANLTNSLKVLYLSSNHIVGE-IPLGHGMLSSLIQLTLNNNELSGQLSPE-LGS 240
+ + L++ K++ + +N E P+GH L +L +L + +N + PE +
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGH--LKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 241 LIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIE----KLIHLSELD 296
L LE+LDLS+N L L ++ LNLS + + N I+ K I L EL
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELA 206
Query: 297 LSHNIFREEIPSQICS-MQSLEKLNLSHNNLSGSIPRCFEEMHWL 340
L N + +P I + SL+K+ L N S PR WL
Sbjct: 207 LDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 250
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 503 ACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS-FVVYEYLEMGSL 548
A Q FL E + +T++RH N+V+ G ++V EY+ GSL
Sbjct: 47 ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 93
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 93 IGNMKSLSDLQLSENILNG-SIPLALGNLTNLVVLDLSTNKL 133
IG++K+L +L ++ N++ +P NLTNL LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 101/225 (44%), Gaps = 17/225 (7%)
Query: 126 LDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLS---ILDLSSNKLN 182
LDLS N L SF + L +L L S C+ E G SLS L L+ N +
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDL---SRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 91
Query: 183 GSIPLSLANLTNSLKVLYLSSNHIVGE-IPLGHGMLSSLIQLTLNNNELSGQLSPE-LGS 240
+ + L++ K++ + +N E P+GH L +L +L + +N + PE +
Sbjct: 92 SLALGAFSGLSSLQKLVAVETNLASLENFPIGH--LKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 241 LIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIE----KLIHLSELD 296
L LE+LDLS+N L L ++ LNLS + + N I+ K I L EL
Sbjct: 150 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELA 208
Query: 297 LSHNIFREEIPSQICS-MQSLEKLNLSHNNLSGSIPRCFEEMHWL 340
L N + +P I + SL+K+ L N S PR WL
Sbjct: 209 LDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 252
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 470 IGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQE--FLNEVNALTKIRHR 521
+G+G G VY+ ++ P+ V VK LP+ + Q E FL E ++K+ H+
Sbjct: 53 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKT----LPEVCSEQDELDFLMEALIISKLNHQ 108
Query: 522 NIVKFYGFCSHALHSFVVYEYLEMGSL 548
NIV+ G +L F++ E + G L
Sbjct: 109 NIVRCIGVSLQSLPRFILLELMAGGDL 135
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 93 IGNMKSLSDLQLSENILNG-SIPLALGNLTNLVVLDLSTNKL 133
IG++K+L +L ++ N++ +P NLTNL LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 101/225 (44%), Gaps = 17/225 (7%)
Query: 126 LDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLS---ILDLSSNKLN 182
LDLS N L SF + L +L L S C+ E G SLS L L+ N +
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDL---SRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 90
Query: 183 GSIPLSLANLTNSLKVLYLSSNHIVGE-IPLGHGMLSSLIQLTLNNNELSGQLSPE-LGS 240
+ + L++ K++ + +N E P+GH L +L +L + +N + PE +
Sbjct: 91 SLALGAFSGLSSLQKLVAVETNLASLENFPIGH--LKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 241 LIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIE----KLIHLSELD 296
L LE+LDLS+N L L ++ LNLS + + N I+ K I L EL
Sbjct: 149 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELA 207
Query: 297 LSHNIFREEIPSQICS-MQSLEKLNLSHNNLSGSIPRCFEEMHWL 340
L N + +P I + SL+K+ L N S PR WL
Sbjct: 208 LDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 251
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+++FL E + + + H NI++ G + + +V EY+E GSL
Sbjct: 78 RRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 121
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 93 IGNMKSLSDLQLSENILNG-SIPLALGNLTNLVVLDLSTNKL 133
IG++K+L +L ++ N++ +P NLTNL LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 101/225 (44%), Gaps = 17/225 (7%)
Query: 126 LDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLS---ILDLSSNKLN 182
LDLS N L SF + L +L L S C+ E G SLS L L+ N +
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDL---SRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 91
Query: 183 GSIPLSLANLTNSLKVLYLSSNHIVGE-IPLGHGMLSSLIQLTLNNNELSGQLSPE-LGS 240
+ + L++ K++ L +N E P+GH L +L +L + +N + PE +
Sbjct: 92 SLALGAFSGLSSLQKLVALETNLASLENFPIGH--LKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 241 LIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIE----KLIHLSELD 296
L LE+LDLS+N L L ++ LNLS + + N I+ K I L EL
Sbjct: 150 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELA 208
Query: 297 LSHNIFREEIPSQICS-MQSLEKLNLSHNNLSGSIPRCFEEMHWL 340
L N + +P I + SL+K+ L N S PR WL
Sbjct: 209 LDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 252
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 29/44 (65%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
++EFL+E + + + H NI++ G ++++ ++ E++E G+L
Sbjct: 61 RREFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGAL 104
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 463 NFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHR 521
+F G+ +G G VY+A+ + TG V +K + Q NEV +++H
Sbjct: 12 DFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHP 71
Query: 522 NIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
+I++ Y + + + ++V E G + L N
Sbjct: 72 SILELYNYFEDSNYVYLVLEMCHNGEMNRYLKN 104
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+++FL E + + + H NI++ G + + +V EY+E GSL
Sbjct: 90 RRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+++FL E + + + H NI++ G + + +V EY+E GSL
Sbjct: 61 RRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 104
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+++FL E + + + H NI++ G + + +V EY+E GSL
Sbjct: 90 RRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 503 ACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS-FVVYEYLEMGSL 548
A Q FL E + +T++RH N+V+ G ++V EY+ GSL
Sbjct: 56 ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 102
>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147
pdb|3NIE|B Chain B, Crystal Structure Of Pf11_0147
Length = 429
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 446 LTFDGKIVHEEIIRATNNFDDGHCIGNGGQGSVYKAKLPTG-EIVDVKKFHSPLPDEMAC 504
L F G I+ ++ +N++ H IG G G VY A + V +KK + D + C
Sbjct: 14 LYFQGAIIKN--VKVPDNYEIKHLIGRGSYGYVYLAYDKNANKNVAIKKVNRMFEDLIDC 71
Query: 505 QQEFLNEVNALTKIRHRNIVKFY 527
++ L E+ L +++ I++ +
Sbjct: 72 KR-ILREITILNRLKSDYIIRLH 93
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+++FL E + + + H NI++ G + + +V EY+E GSL
Sbjct: 90 RRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+++FL E + + + H NI++ G + + +V EY+E GSL
Sbjct: 90 RRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 470 IGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQE--FLNEVNALTKIRHR 521
+G+G G VY+ ++ P+ V VK LP+ + Q E FL E ++K H+
Sbjct: 38 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKT----LPEVCSEQDELDFLMEALIISKFNHQ 93
Query: 522 NIVKFYGFCSHALHSFVVYEYLEMGSL 548
NIV+ G +L F++ E + G L
Sbjct: 94 NIVRCIGVSLQSLPRFILMELMAGGDL 120
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 503 ACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS-FVVYEYLEMGSL 548
A Q FL E + +T++RH N+V+ G ++V EY+ GSL
Sbjct: 41 ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 87
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+++FL E + + + H NI++ G + + +V EY+E GSL
Sbjct: 90 RRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+++FL E + + + H NI++ G + + +V EY+E GSL
Sbjct: 90 RRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 470 IGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQE--FLNEVNALTKIRHR 521
+G+G G VY+ ++ P+ V VK LP+ + Q E FL E ++K H+
Sbjct: 39 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKT----LPEVCSEQDELDFLMEALIISKFNHQ 94
Query: 522 NIVKFYGFCSHALHSFVVYEYLEMGSL 548
NIV+ G +L F++ E + G L
Sbjct: 95 NIVRCIGVSLQSLPRFILLELMAGGDL 121
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 470 IGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYG 528
+G+G G VYKAK TG + K + +E+ ++++ E+ L H IVK G
Sbjct: 19 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEEL---EDYIVEIEILATCDHPYIVKLLG 75
Query: 529 FCSHALHSFVVYEYLEMGSL 548
H +++ E+ G++
Sbjct: 76 AYYHDGKLWIMIEFCPGGAV 95
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 185 IPLSLANLTNSLKVLYLSSNHIVGEI---PLGHGMLSSLIQLTLNNNELSG--QLSPELG 239
+P L+ SL+ L LS N +V E SL L L N L+ + L
Sbjct: 325 VPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLL 384
Query: 240 SLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQF---SQKIPNKIEKL 289
+L L +D+S N+FH S+PE+ K+ YLNLS+ + + IP +E L
Sbjct: 385 TLKNLTNIDISKNSFH-SMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEIL 436
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 257 SIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSL 316
SIP L+ VK L+LSNN+ + + +++ ++L L L+ N S+ SL
Sbjct: 19 SIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 317 EKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGL 353
E L+LS+N LS F+ + L+ +++ N + L
Sbjct: 77 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL 113
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+++FL E + + + H NI++ G + + +V EY+E GSL
Sbjct: 90 RRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 470 IGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQE--FLNEVNALTKIRHR 521
+G+G G VY+ ++ P+ V VK LP+ + Q E FL E ++K H+
Sbjct: 39 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKT----LPEVCSEQDELDFLMEALIISKFNHQ 94
Query: 522 NIVKFYGFCSHALHSFVVYEYLEMGSL 548
NIV+ G +L F++ E + G L
Sbjct: 95 NIVRCIGVSLQSLPRFILLELMAGGDL 121
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 470 IGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQE--FLNEVNALTKIRHR 521
+G+G G VY+ ++ P+ V VK LP+ + Q E FL E ++K H+
Sbjct: 65 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKT----LPEVCSEQDELDFLMEALIISKFNHQ 120
Query: 522 NIVKFYGFCSHALHSFVVYEYLEMGSL 548
NIV+ G +L F++ E + G L
Sbjct: 121 NIVRCIGVSLQSLPRFILLELMAGGDL 147
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 470 IGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQE--FLNEVNALTKIRHR 521
+G+G G VY+ ++ P+ V VK LP+ + Q E FL E ++K H+
Sbjct: 79 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKT----LPEVCSEQDELDFLMEALIISKFNHQ 134
Query: 522 NIVKFYGFCSHALHSFVVYEYLEMGSL 548
NIV+ G +L F++ E + G L
Sbjct: 135 NIVRCIGVSLQSLPRFILLELMAGGDL 161
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 29/44 (65%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
++EFL+E + + + H NI++ G ++++ ++ E++E G+L
Sbjct: 59 RREFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGAL 102
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+++FL E + + + H NI++ G + + +V EY+E GSL
Sbjct: 88 RRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 131
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 470 IGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQE--FLNEVNALTKIRHR 521
+G+G G VY+ ++ P+ V VK LP+ + Q E FL E ++K H+
Sbjct: 45 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKT----LPEVCSEQDELDFLMEALIISKFNHQ 100
Query: 522 NIVKFYGFCSHALHSFVVYEYLEMGSL 548
NIV+ G +L F++ E + G L
Sbjct: 101 NIVRCIGVSLQSLPRFILLELMAGGDL 127
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 470 IGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQE--FLNEVNALTKIRHR 521
+G+G G VY+ ++ P+ V VK LP+ + Q E FL E ++K H+
Sbjct: 55 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKT----LPEVCSEQDELDFLMEALIISKFNHQ 110
Query: 522 NIVKFYGFCSHALHSFVVYEYLEMGSL 548
NIV+ G +L F++ E + G L
Sbjct: 111 NIVRCIGVSLQSLPRFILLELMAGGDL 137
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 470 IGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYG 528
+G+G G VYKAK TG + K + +E+ ++++ E+ L H IVK G
Sbjct: 27 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEEL---EDYIVEIEILATCDHPYIVKLLG 83
Query: 529 FCSHALHSFVVYEYLEMGSL 548
H +++ E+ G++
Sbjct: 84 AYYHDGKLWIMIEFCPGGAV 103
>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In
Complex With Crizotinib (Pf-02341066)
Length = 327
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 470 IGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQE--FLNEVNALTKIRHR 521
+G+G G VY+ ++ P+ V VK LP+ + Q E FL E ++K H+
Sbjct: 38 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKT----LPEVCSEQDELDFLMEALIISKFNHQ 93
Query: 522 NIVKFYGFCSHALHSFVVYEYLEMGSL 548
NIV+ G +L F++ E + G L
Sbjct: 94 NIVRCIGVSLQSLPRFILLELMAGGDL 120
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
+G G G V+ V VK P M+ Q FL E N + ++H +V+ Y
Sbjct: 20 LGAGQFGEVWMGYYNNSTKVAVKTLK---PGTMSVQA-FLEEANLMKTLQHDKLVRLYAV 75
Query: 530 CSHALHSFVVYEYLEMGSLAMNLSNDAAAE 559
+ +++ E++ GSL L +D +
Sbjct: 76 VTKEEPIYIITEFMAKGSLLDFLKSDEGGK 105
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 470 IGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQE--FLNEVNALTKIRHR 521
+G+G G VY+ ++ P+ V VK LP+ + Q E FL E ++K H+
Sbjct: 56 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKT----LPEVCSEQDELDFLMEALIISKFNHQ 111
Query: 522 NIVKFYGFCSHALHSFVVYEYLEMGSL 548
NIV+ G +L F++ E + G L
Sbjct: 112 NIVRCIGVSLQSLPRFILLELMAGGDL 138
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 470 IGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQE--FLNEVNALTKIRHR 521
+G+G G VY+ ++ P+ V VK LP+ + Q E FL E ++K H+
Sbjct: 53 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKT----LPEVCSEQDELDFLMEALIISKFNHQ 108
Query: 522 NIVKFYGFCSHALHSFVVYEYLEMGSL 548
NIV+ G +L F++ E + G L
Sbjct: 109 NIVRCIGVSLQSLPRFILMELMAGGDL 135
>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Nvp- Tae684
pdb|2XBA|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Pha-E429
Length = 315
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 470 IGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQE--FLNEVNALTKIRHR 521
+G+G G VY+ ++ P+ V VK LP+ + Q E FL E ++K H+
Sbjct: 30 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKT----LPEVCSEQDELDFLMEALIISKFNHQ 85
Query: 522 NIVKFYGFCSHALHSFVVYEYLEMGSL 548
NIV+ G +L F++ E + G L
Sbjct: 86 NIVRCIGVSLQSLPRFILLELMAGGDL 112
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 470 IGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQE--FLNEVNALTKIRHR 521
+G+G G VY+ ++ P+ V VK LP+ + Q E FL E ++K H+
Sbjct: 53 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKT----LPEVYSEQDELDFLMEALIISKFNHQ 108
Query: 522 NIVKFYGFCSHALHSFVVYEYLEMGSL 548
NIV+ G +L F++ E + G L
Sbjct: 109 NIVRCIGVSLQSLPRFILLELMAGGDL 135
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLA 549
+ +F+ E + K+ H +V+ YG C +V+E++E G L+
Sbjct: 66 EDDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLS 110
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 290 IHLSELDLSHNIFREEIPSQICSMQS-LEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYN 348
+ L LDLSHN R+ + C S L LNLS L +P+ LS +D+SYN
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAK--LSVLDLSYN 284
Query: 349 ALQGLIPNSTAFRDAPMLALQGN 371
L P+ L+L+GN
Sbjct: 285 RLD-RNPSPDELPQVGNLSLKGN 306
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 462 NNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKK--FHSPLPDEMACQQEFLNEVNALTKIR 519
++FD +G G G+VY A+ + + K F S L E + + E+ + +R
Sbjct: 14 DDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKE-GVEHQLRREIEIQSHLR 72
Query: 520 HRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQ 560
H NI++ Y + +++ E+ G L L ++
Sbjct: 73 HPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDE 113
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 470 IGNGGQGSVYKA-KLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR-HRNIVKFY 527
+G G G V+K+ TGE+V VKK + Q+ F E+ LT++ H NIV
Sbjct: 17 LGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTF-REIMILTELSGHENIVNLL 75
Query: 528 GF--CSHALHSFVVYEYLEMGSLAMNLSN--DAAAEQFCWTKRMNAIK 571
+ ++V++Y+E A+ +N + +Q+ + + IK
Sbjct: 76 NVLRADNDRDVYLVFDYMETDLHAVIRANILEPVHKQYVVYQLIKVIK 123
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 503 ACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS-FVVYEYLEMGSL 548
A Q FL E + +T++RH N+V+ G ++V EY+ GSL
Sbjct: 228 ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 274
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 120 LTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSN 179
L +L L L +N+++ SF L+S+ +L LY+N + P ++SLS L+L +N
Sbjct: 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Query: 180 KLNGSIPLS 188
N + L+
Sbjct: 164 PFNCNCYLA 172
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 470 IGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQE---FLNEVNALTKIRHRNIVK 525
IG G G V A + +G++V VKK ++ QQ NEV + +H N+V+
Sbjct: 28 IGEGSTGIVCIATVRSSGKLVAVKKM------DLRKQQRRELLFNEVVIMRDYQHENVVE 81
Query: 526 FYGFCSHALHSFVVYEYLEMGSL 548
Y +VV E+LE G+L
Sbjct: 82 MYNSYLVGDELWVVMEFLEGGAL 104
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSP-----LPDEMACQQEFLNEVN 513
AT+ ++ IG G G+VYKA+ P +G V +K P LP + L +
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61
Query: 514 ALTKIRHRNIVKFYGFCS 531
A H N+V+ C+
Sbjct: 62 AF---EHPNVVRLMDVCA 76
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 470 IGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQE---FLNEVNALTKIRHRNIVK 525
IG G G V A + +G++V VKK ++ QQ NEV + +H N+V+
Sbjct: 37 IGEGSTGIVCIATVRSSGKLVAVKKM------DLRKQQRRELLFNEVVIMRDYQHENVVE 90
Query: 526 FYGFCSHALHSFVVYEYLEMGSL 548
Y +VV E+LE G+L
Sbjct: 91 MYNSYLVGDELWVVMEFLEGGAL 113
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSP-----LPDEMACQQEFLNEVN 513
AT+ ++ IG G G+VYKA+ P +G V +K P LP + L +
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61
Query: 514 ALTKIRHRNIVKFYGFCS 531
A H N+V+ C+
Sbjct: 62 AF---EHPNVVRLMDVCA 76
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSP-----LPDEMACQQEFLNEVN 513
AT+ ++ IG G G+VYKA+ P +G V +K P LP + L +
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61
Query: 514 ALTKIRHRNIVKFYGFCS 531
A H N+V+ C+
Sbjct: 62 AF---EHPNVVRLMDVCA 76
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 470 IGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQE---FLNEVNALTKIRHRNIVK 525
IG G G V A + +G++V VKK ++ QQ NEV + +H N+V+
Sbjct: 32 IGEGSTGIVCIATVRSSGKLVAVKKM------DLRKQQRRELLFNEVVIMRDYQHENVVE 85
Query: 526 FYGFCSHALHSFVVYEYLEMGSL 548
Y +VV E+LE G+L
Sbjct: 86 MYNSYLVGDELWVVMEFLEGGAL 108
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 470 IGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQE---FLNEVNALTKIRHRNIVK 525
IG G G V A + +G++V VKK ++ QQ NEV + +H N+V+
Sbjct: 39 IGEGSTGIVCIATVRSSGKLVAVKKM------DLRKQQRRELLFNEVVIMRDYQHENVVE 92
Query: 526 FYGFCSHALHSFVVYEYLEMGSL 548
Y +VV E+LE G+L
Sbjct: 93 MYNSYLVGDELWVVMEFLEGGAL 115
>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXP|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 318
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 449 DGKIVHEEIIRATNNFDDGHCIGNGGQGSVY---KAKLPTGEIVDVKKFHSPLPDEMACQ 505
D + H+ ++ + +GH G+ S+Y TGE+V VK + + +
Sbjct: 24 DPTVFHKRYLKKIRDLGEGHF----GKVSLYCYDPTNDGTGEMVAVKALKADAGPQH--R 77
Query: 506 QEFLNEVNALTKIRHRNIVKFYGFCSHALHSF--VVYEYLEMGSL 548
+ E++ L + H +I+K+ G C A + +V EY+ +GSL
Sbjct: 78 SGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSL 122
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 470 IGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQE---FLNEVNALTKIRHRNIVK 525
IG G G V A + +G++V VKK ++ QQ NEV + +H N+V+
Sbjct: 159 IGEGSTGIVCIATVRSSGKLVAVKKM------DLRKQQRRELLFNEVVIMRDYQHENVVE 212
Query: 526 FYGFCSHALHSFVVYEYLEMGSL 548
Y +VV E+LE G+L
Sbjct: 213 MYNSYLVGDELWVVMEFLEGGAL 235
>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 290
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 11/105 (10%)
Query: 449 DGKIVHEEIIRATNNFDDGHCIGNGGQGSVY---KAKLPTGEIVDVKKFHSPLPDEMACQ 505
D + H+ ++ + +GH G+ S+Y TGE+V VK ++ +
Sbjct: 1 DPTVFHKRYLKKIRDLGEGH----FGKVSLYCYDPTNDGTGEMVAVKALKEGCGPQL--R 54
Query: 506 QEFLNEVNALTKIRHRNIVKFYGFCSHALHSFV--VYEYLEMGSL 548
+ E+ L + H +IVK+ G C V V EY+ +GSL
Sbjct: 55 SGWQREIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSL 99
>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 291
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 11/105 (10%)
Query: 449 DGKIVHEEIIRATNNFDDGHCIGNGGQGSVY---KAKLPTGEIVDVKKFHSPLPDEMACQ 505
D + H+ ++ + +GH G+ S+Y TGE+V VK ++ +
Sbjct: 2 DPTVFHKRYLKKIRDLGEGH----FGKVSLYCYDPTNDGTGEMVAVKALKEGCGPQL--R 55
Query: 506 QEFLNEVNALTKIRHRNIVKFYGFCSHALHSFV--VYEYLEMGSL 548
+ E+ L + H +IVK+ G C V V EY+ +GSL
Sbjct: 56 SGWQREIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSL 100
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 15/118 (12%)
Query: 444 SVLTFDGKIVHEEIIRATNNFD---DGHCI------GNGGQGSVYKAKLPT---GEI-VD 490
V TF E+ +A F D CI G G G V +L EI V
Sbjct: 2 GVRTFVDPFTFEDPNQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVA 61
Query: 491 VKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+K + D+ +++FL+E + + + H NI+ G + ++ EY+E GSL
Sbjct: 62 IKTLKAGYTDKQ--RRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSL 117
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 97 KSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENS 156
+++++++L +N + P A L +DLS N++S P +F L SL+ L LY N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 157 LCDSIPKEI-GNMNSLSILDLSSNKLN 182
+ + +PK + + SL +L L++NK+N
Sbjct: 92 ITE-LPKSLFEGLFSLQLLLLNANKIN 117
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 236 PELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSEL 295
PE + I+LE NT P + S KL ++LSNNQ S+ P+ + L L+ L
Sbjct: 31 PETITEIRLE-----QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL 85
Query: 296 DLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIP 355
L N E S + SL+ L L+ N ++ F+++H L+ + + N LQ +
Sbjct: 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAK 145
Query: 356 NSTAFRDAPMLALQ 369
+ +P+ A+Q
Sbjct: 146 GTF----SPLRAIQ 155
>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3
Length = 361
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 457 IIRATNNFDDGHCIGNG--GQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNA 514
I+ ++ +D IG+G G + + KL T E+V VK + Q+E +N
Sbjct: 15 IMHDSDRYDFVKDIGSGNFGVARLMRDKL-TKELVAVKYIERGAAIDENVQREIINH--- 70
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSN 554
+RH NIV+F H ++ EY G L + N
Sbjct: 71 -RSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICN 109
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 470 IGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQE---FLNEVNALTKIRHRNIVK 525
IG G G V A + +G++V VKK ++ QQ NEV + +H N+V+
Sbjct: 82 IGEGSTGIVCIATVRSSGKLVAVKKM------DLRKQQRRELLFNEVVIMRDYQHENVVE 135
Query: 526 FYGFCSHALHSFVVYEYLEMGSL 548
Y +VV E+LE G+L
Sbjct: 136 MYNSYLVGDELWVVMEFLEGGAL 158
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 97 KSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENS 156
+++++++L +N + P A L +DLS N++S P +F L SL+ L LY N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 157 LCDSIPKEI-GNMNSLSILDLSSNKLN 182
+ + +PK + + SL +L L++NK+N
Sbjct: 92 ITE-LPKSLFEGLFSLQLLLLNANKIN 117
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 236 PELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSEL 295
PE + I+LE NT P + S KL ++LSNNQ S+ P+ + L L+ L
Sbjct: 31 PETITEIRLE-----QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL 85
Query: 296 DLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIP 355
L N E S + SL+ L L+ N ++ F+++H L+ + + N LQ +
Sbjct: 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145
Query: 356 NSTAFRDAPMLALQ 369
+ +P+ A+Q
Sbjct: 146 GTF----SPLRAIQ 155
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 257 SIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSL 316
SIP L+ VK L+LSNN+ + + +++ ++L L L+ N S+ SL
Sbjct: 45 SIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 317 EKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGL 353
E L+LS+N LS F+ + L+ +++ N + L
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL 139
>pdb|2I7A|A Chain A, Domain Iv Of Human Calpain 13
Length = 174
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 288 KLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCF-EEMHWLSCI 343
+L+HL L S ++ R PS +C + LE + + NLS + EM W+S +
Sbjct: 115 ELLHLVTLRYSDSVGRVSFPSLVCFLMRLEAMAKTFRNLSKDGKGLYLTEMEWMSLV 171
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 470 IGNGGQGSVYKA-KLPTGEIVDVK-----KFHSPLPDEMACQQEFLNEVNALTKIRHRNI 523
IG GG V A + TGE+V +K S LP E+ AL +RH++I
Sbjct: 18 IGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLP-------RIKTEIEALKNLRHQHI 70
Query: 524 VKFYGFCSHALHSFVVYEYLEMGSL 548
+ Y A F+V EY G L
Sbjct: 71 CQLYHVLETANKIFMVLEYCPGGEL 95
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 458 IRATNNFDDGHCIGNGGQGSVYKA-KLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALT 516
+ +++ F +GNG +VYK TG V +K+ L E + E++ +
Sbjct: 1 MSSSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVK--LDSEEGTPSTAIREISLMK 58
Query: 517 KIRHRNIVKFYGFCSHALHSFVVYEYLE 544
+++H NIV+ Y +V+E+++
Sbjct: 59 ELKHENIVRLYDVIHTENKLTLVFEFMD 86
>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|C Chain C, Crystal Structure Of Cdk4CYCLIN D3
Length = 308
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 460 ATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSP--------LPDEMACQQEFLN 510
AT+ ++ IG G G+VYKA+ P +G V +K P LP + L
Sbjct: 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLR 66
Query: 511 EVNALTKIRHRNIVKFYGFCS 531
+ A H N+V+ C+
Sbjct: 67 RLEAF---EHPNVVRLMDVCA 84
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+++FL E + + + H NI+ G + + +V EY+E GSL
Sbjct: 67 RRDFLGEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSL 110
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 470 IGNGGQGSVYKAKLPTGE--IVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFY 527
+G G+ + K+P V +K + D+ +++FL+E + + + H NI+
Sbjct: 18 VGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQ--RRDFLSEASIMGQFDHPNIIHLE 75
Query: 528 GFCSHALHSFVVYEYLEMGSL 548
G + ++ EY+E GSL
Sbjct: 76 GVVTKCKPVMIITEYMENGSL 96
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 470 IGNGGQGSVYKAKLPTGE--IVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFY 527
+G G+ + K+P V +K + D+ +++FL+E + + + H NI+
Sbjct: 24 VGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQ--RRDFLSEASIMGQFDHPNIIHLE 81
Query: 528 GFCSHALHSFVVYEYLEMGSL 548
G + ++ EY+E GSL
Sbjct: 82 GVVTKCKPVMIITEYMENGSL 102
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVK--KFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFY 527
+G G G V+ V VK K S PD FL E N + +++H+ +V+ Y
Sbjct: 21 LGAGQAGEVWMGYYNGHTKVAVKSLKQGSMSPDA------FLAEANLMKQLQHQRLVRLY 74
Query: 528 GFCSHALHSFVVYEYLEMGSL 548
+ +++ EY+E GSL
Sbjct: 75 AVVTQE-PIYIITEYMENGSL 94
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
+G G G V+ A V VK P M+ + FL E N + ++H +VK +
Sbjct: 23 LGAGQFGEVWMATYNKHTKVAVKTMK---PGSMSVEA-FLAEANVMKTLQHDKLVKLHAV 78
Query: 530 CSHALHSFVVYEYLEMGSLAMNLSNDAAAEQ 560
+ +++ E++ GSL L +D ++Q
Sbjct: 79 VTKE-PIYIITEFMAKGSLLDFLKSDEGSKQ 108
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 98/224 (43%), Gaps = 41/224 (18%)
Query: 81 QDWPLYSSIPDEIGNMKSLSDLQLSENILN------GSIPLALGNLTNLVVLDLSTNKLS 134
Q+ P ++I + +K+L DL S LN +P +LT LD+S N S
Sbjct: 234 QNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLT---FLDVSENIFS 290
Query: 135 G--SIP--LSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLA 190
G +P L + N +S I SLCD P SL L++S+NKL + L
Sbjct: 291 GLSELPPNLYYLNASSNEI-----RSLCDLPP-------SLEELNVSNNKL-----IELP 333
Query: 191 NLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLS 250
L L+ L S NH+ E+P + +L QL + N L P++ ++ DL
Sbjct: 334 ALPPRLERLIASFNHL-AEVP---ELPQNLKQLHVEYNPLRE--FPDIPESVE----DLR 383
Query: 251 ANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSE 294
N+ +PE NL +LH +F IP +E L SE
Sbjct: 384 MNSHLAEVPELPQNLKQLHVETNPLREFPD-IPESVEDLRMNSE 426
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 234 LSPELGSLIQ----LEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKL 289
L L SL Q ++ LDLS N + L+ KL LNLS+N + + +E L
Sbjct: 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL 79
Query: 290 IHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLS 327
L LDL++N +E + S+E L+ ++NN+S
Sbjct: 80 STLRTLDLNNNYVQELLVG-----PSIETLHAANNNIS 112
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 470 IGNGGQGSVYKAKLPT------GEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHR-N 522
IG G G V KA++ I +K++ S D+ ++F E+ L K+ H N
Sbjct: 23 IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK--DD---HRDFAGELEVLCKLGHHPN 77
Query: 523 IVKFYGFCSHALHSFVVYEYLEMGSL 548
I+ G C H + ++ EY G+L
Sbjct: 78 IINLLGACEHRGYLYLAIEYAPHGNL 103
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 470 IGNGGQGSVYKAKLPT------GEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHR-N 522
IG G G V KA++ I +K++ S D+ ++F E+ L K+ H N
Sbjct: 30 IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK--DD---HRDFAGELEVLCKLGHHPN 84
Query: 523 IVKFYGFCSHALHSFVVYEYLEMGSL 548
I+ G C H + ++ EY G+L
Sbjct: 85 IINLLGACEHRGYLYLAIEYAPHGNL 110
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 508 FLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
FL E N + +++H+ +V+ Y + +++ EY+E GSL
Sbjct: 61 FLAEANLMKQLQHQRLVRLYAVVTQE-PIYIITEYMENGSL 100
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 470 IGNGGQGSVYKAKLPT------GEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHR-N 522
IG G G V KA++ I +K++ S D+ ++F E+ L K+ H N
Sbjct: 33 IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK--DD---HRDFAGELEVLCKLGHHPN 87
Query: 523 IVKFYGFCSHALHSFVVYEYLEMGSL 548
I+ G C H + ++ EY G+L
Sbjct: 88 IINLLGACEHRGYLYLAIEYAPHGNL 113
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 508 FLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
FL E N + +++H+ +V+ Y + +++ EY+E GSL
Sbjct: 63 FLAEANLMKQLQHQRLVRLYAVVTQE-PIYIITEYMENGSL 102
>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
pdb|3N9X|B Chain B, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
Length = 432
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 458 IRATNNFDDGHCIGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALT 516
+ +N+ H IG G G VY A E V +KK + D + C++ L E+ L
Sbjct: 22 VHVPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKR-ILREITILN 80
Query: 517 KIRHRNIVKFY 527
+++ I++ Y
Sbjct: 81 RLKSDYIIRLY 91
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 508 FLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
FL E N + +++H+ +V+ Y + +++ EY+E GSL
Sbjct: 64 FLAEANLMKQLQHQRLVRLYAVVTQE-PIYIITEYMENGSL 103
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 506 QEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQFCW 563
+ F + ++K+ H+++V YG C + +V E+++ GSL L + W
Sbjct: 57 ESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILW 114
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKK---FHSPLPDEMACQQEFLNEVNALT 516
+++F +G G G V A PTGEIV +KK F PL A + L E+ L
Sbjct: 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPL---FALRT--LREIKILK 64
Query: 517 KIRHRNIVKFY 527
+H NI+ +
Sbjct: 65 HFKHENIITIF 75
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
+G G G V+ A V VK P M+ + FL E N + ++H +VK +
Sbjct: 190 LGAGQFGEVWMATYNKHTKVAVKTMK---PGSMSVEA-FLAEANVMKTLQHDKLVKLHAV 245
Query: 530 CSHALHSFVVYEYLEMGSLAMNLSNDAAAEQ 560
+ +++ E++ GSL L +D ++Q
Sbjct: 246 VTKE-PIYIITEFMAKGSLLDFLKSDEGSKQ 275
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
+G G G V+ A V VK P M+ + FL E N + ++H +VK +
Sbjct: 196 LGAGQFGEVWMATYNKHTKVAVKTMK---PGSMSVEA-FLAEANVMKTLQHDKLVKLHAV 251
Query: 530 CSHALHSFVVYEYLEMGSLAMNLSNDAAAEQ 560
+ +++ E++ GSL L +D ++Q
Sbjct: 252 VTKE-PIYIITEFMAKGSLLDFLKSDEGSKQ 281
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKK---FHSPLPDEMACQQEFLNEVNALT 516
+++F +G G G V A PTGEIV +KK F PL A + L E+ L
Sbjct: 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPL---FALRT--LREIKILK 64
Query: 517 KIRHRNIVKFY 527
+H NI+ +
Sbjct: 65 HFKHENIITIF 75
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKK---FHSPLPDEMACQQEFLNEVNALT 516
+++F +G G G V A PTGEIV +KK F PL A + L E+ L
Sbjct: 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPL---FALRT--LREIKILK 64
Query: 517 KIRHRNIVKFY 527
+H NI+ +
Sbjct: 65 HFKHENIITIF 75
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 508 FLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
FL E N + +++H+ +V+ Y + +++ EY+E GSL
Sbjct: 55 FLAEANLMKQLQHQRLVRLYAVVTQE-PIYIITEYMENGSL 94
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 508 FLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
FL E N + +++H+ +V+ Y + +++ EY+E GSL
Sbjct: 57 FLAEANLMKQLQHQRLVRLYAVVTQE-PIYIITEYMENGSL 96
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 508 FLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
FL E N + +++H+ +V+ Y + +++ EY+E GSL
Sbjct: 61 FLAEANLMKQLQHQRLVRLYAVVTQE-PIYIITEYMENGSL 100
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 508 FLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
FL E N + +++H+ +V+ Y + +++ EY+E GSL
Sbjct: 65 FLAEANLMKQLQHQRLVRLYAVVTQE-PIYIITEYMENGSL 104
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 508 FLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
FL E N + +++H+ +V+ Y + +++ EY+E GSL
Sbjct: 56 FLAEANLMKQLQHQRLVRLYAVVTQE-PIYIITEYMENGSL 95
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 508 FLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
FL E N + +++H+ +V+ Y + +++ EY+E GSL
Sbjct: 60 FLAEANLMKQLQHQRLVRLYAVVTQE-PIYIITEYMENGSL 99
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 508 FLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
FL E N + +++H+ +V+ Y + +++ EY+E GSL
Sbjct: 55 FLAEANLMKQLQHQRLVRLYAVVTQE-PIYIITEYMENGSL 94
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 508 FLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
FL E N + +++H+ +V+ Y + +++ EY+E GSL
Sbjct: 55 FLAEANLMKQLQHQRLVRLYAVVTQE-PIYIITEYMENGSL 94
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 468 HCIGNGGQGSVYKA--KLPTGE--IVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNI 523
IG G G V KLP V +K S ++ +++FL+E + + + H N+
Sbjct: 13 QVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQ--RRDFLSEASIMGQFDHPNV 70
Query: 524 VKFYGFCSHALHSFVVYEYLEMGSL 548
+ G + + ++ E++E GSL
Sbjct: 71 IHLEGVVTKSTPVMIITEFMENGSL 95
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 508 FLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
FL E N + +++H+ +V+ Y + +++ EY+E GSL
Sbjct: 51 FLAEANLMKQLQHQRLVRLYAVVTQE-PIYIITEYMENGSL 90
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 506 QEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQFCW 563
+ F + ++K+ H+++V YG C + +V E+++ GSL L + W
Sbjct: 57 ESFFEAASMMSKLSHKHLVLNYGVCFCGDENILVQEFVKFGSLDTYLKKNKNCINILW 114
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 508 FLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
FL E N + +++H+ +V+ Y + +++ EY+E GSL
Sbjct: 50 FLAEANLMKQLQHQRLVRLYAVVTQE-PIYIITEYMENGSL 89
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 468 HCIGNGGQGSVYKA--KLPTGE--IVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNI 523
IG G G V KLP V +K S ++ +++FL+E + + + H N+
Sbjct: 39 QVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQ--RRDFLSEASIMGQFDHPNV 96
Query: 524 VKFYGFCSHALHSFVVYEYLEMGSL 548
+ G + + ++ E++E GSL
Sbjct: 97 IHLEGVVTKSTPVMIITEFMENGSL 121
>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With
Quinoline-Thiadiazole- Thiophene Inhibitor
Length = 302
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 449 DGKIVHEEIIRATNNFDDGHCIGNGGQGSVY---KAKLPTGEIVDVKKFHSPLPDEMACQ 505
D + H+ ++ + +GH G+ S+Y TGE+V VK + + +
Sbjct: 7 DPTVFHKRYLKKIRDLGEGHF----GKVSLYCYDPTNDGTGEMVAVKALKADCGPQH--R 60
Query: 506 QEFLNEVNALTKIRHRNIVKFYGFCSHALHSF--VVYEYLEMGSL 548
+ E++ L + H +I+K+ G C +V EY+ +GSL
Sbjct: 61 SGWKQEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSL 105
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 234 LSPELGSLIQ----LEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKL 289
L L SL Q ++ LDLS N + L+ KL LNLS+N + + +E L
Sbjct: 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL 79
Query: 290 IHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLS 327
L LDL++N +E + S+E L+ ++NN+S
Sbjct: 80 STLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS 112
>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6
Length = 302
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 449 DGKIVHEEIIRATNNFDDGHCIGNGGQGSVY---KAKLPTGEIVDVKKFHSPLPDEMACQ 505
D + H+ ++ + +GH G+ S+Y TGE+V VK + + +
Sbjct: 7 DPTVFHKRYLKKIRDLGEGHF----GKVSLYCYDPTNDGTGEMVAVKALKADCGPQH--R 60
Query: 506 QEFLNEVNALTKIRHRNIVKFYGFCSHALHSF--VVYEYLEMGSL 548
+ E++ L + H +I+K+ G C +V EY+ +GSL
Sbjct: 61 SGWKQEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSL 105
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+++FL E + + + H NI++ G + + +V E +E GSL
Sbjct: 90 RRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSL 133
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 466 DGHCIGNG------GQGSVYKAKLP----TGEIVDVKKFHSPLPDEMACQQEFLNEVNAL 515
DG IGN G+GS K KL TG+ V +K + + + Q E++ L
Sbjct: 8 DGAHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYL 67
Query: 516 TKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQ 560
+RH +I+K Y +V EY + D +EQ
Sbjct: 68 RLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQ 112
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+++FL E + + + H NI++ G + + +V E +E GSL
Sbjct: 61 RRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSL 104
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 466 DGHCIGNG------GQGSVYKAKLP----TGEIVDVKKFHSPLPDEMACQQEFLNEVNAL 515
DG IGN G+GS K KL TG+ V +K + + + Q E++ L
Sbjct: 9 DGAHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYL 68
Query: 516 TKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQ 560
+RH +I+K Y +V EY + D +EQ
Sbjct: 69 RLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQ 113
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 466 DGHCIGNG------GQGSVYKAKLP----TGEIVDVKKFHSPLPDEMACQQEFLNEVNAL 515
DG IGN G+GS K KL TG+ V +K + + + Q E++ L
Sbjct: 3 DGAHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYL 62
Query: 516 TKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQ 560
+RH +I+K Y +V EY + D +EQ
Sbjct: 63 RLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQ 107
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEIXI 57
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 58 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 98
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 505 QQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+++FL E + + + H NI++ G + + +V E +E GSL
Sbjct: 90 RRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSL 133
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEIXI 58
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 59 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 99
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEIXI 57
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 58 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 98
>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57
Length = 360
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 31 IGEGAYGMVCSAYDNVNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 84
>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4FMQ|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 33 IGEGAYGMVCSAYDNVNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 86
>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75
pdb|4FV1|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek4
pdb|4FV2|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek5
pdb|4FV3|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek6
pdb|4FV4|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek7
pdb|4FV5|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek9
pdb|4FV8|A Chain A, Crystal Structure Of The Erk2 Complexed With E63
pdb|4FV9|A Chain A, Crystal Structure Of The Erk2 Complexed With E71
pdb|4G6N|A Chain A, Crystal Structure Of The Erk2
Length = 360
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 31 IGEGAYGMVCSAYDNVNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 84
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 470 IGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
+G G+ V K +L TG V VK + + + E+ L RH +I+K Y
Sbjct: 26 VGTFGKVKVGKHEL-TGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQV 84
Query: 530 CSHALHSFVVYEYLEMGSL 548
S F+V EY+ G L
Sbjct: 85 ISTPSDIFMVMEYVSGGEL 103
>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A
Pyrazolopyridazine Derivative
pdb|3W55|A Chain A, The Structure Of Erk2 In Complex With Fr148083
Length = 368
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 39 IGEGAYGMVCSAYDNVNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 92
>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule
Inhibitor
Length = 368
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 31 IGEGAYGMVCSAYDNVNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 84
>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94
pdb|4G6O|A Chain A, Crystal Structure Of The Erk2
Length = 360
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 31 IGEGAYGMVCSAYDNVNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 84
>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed
With A Specific Inhibitor Of Human P38 Map Kinase
Length = 380
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 51 IGEGAYGMVCSAYDNVNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 104
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 446 LTFDGKIVHEEIIRATNNFDDGHCIG---NGGQGSVYKAK------LPTGEIVDVKKFHS 496
L F +E + R N D IG +G G VYKA+ L +++D K
Sbjct: 18 LYFQSMKQYEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKS--- 74
Query: 497 PLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+E+ ++++ E++ L H NIVK + + +++ E+ G++
Sbjct: 75 --EEEL---EDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAV 121
>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol
pdb|4FUY|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek2
pdb|4FV0|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek3
Length = 360
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 31 IGEGAYGMVCSAYDNVNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 84
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 462 NNFDDGHCIGNGGQGSVYKA-KLPTGEIVDVKKFHSPLPDEMACQQE---FLNEVNALTK 517
NN G +G G G V +A G+ V K + A E ++E+ ++
Sbjct: 38 NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSH 97
Query: 518 I-RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAE 559
+ +H NIV G C+H V+ EY G L L A A+
Sbjct: 98 LGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEAD 140
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 446 LTFDGKIVHEEIIRATNNFDDGHCIG---NGGQGSVYKAK------LPTGEIVDVKKFHS 496
L F +E + R N D IG +G G VYKA+ L +++D K
Sbjct: 18 LYFQSMKQYEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKS--- 74
Query: 497 PLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+E+ ++++ E++ L H NIVK + + +++ E+ G++
Sbjct: 75 --EEEL---EDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAV 121
>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With
N,n-dimethyl-4-(4-
Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide
pdb|2OJI|A Chain A, Crystal Structure Of Erk2 In Complex With
N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2OJJ|A Chain A, Crystal Structure Of Erk2 In Complex With (S)-N-(1-(3-
Chloro-4-Fluorophenyl)-2-Hydroxyethyl)-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|3I5Z|A Chain A, Crystal Structure Of Erk2 Bound To
(S)-N-(2-Hydroxy-1-Phenylethyl)-4-
(5-Methyl-2-(Phenylamino)pyrimidin-4-Yl)-1h-Pyrrole-2-
Carboxamide
pdb|3I60|A Chain A, Crystal Structure Of Erk2 Bound To
(s)-4-(2-(2-chlorophenylamino)-5-
Methylpyrimidin-4-yl)-n-(2-hydroxy-1-phenylethyl)-1h-
pyrrole-2- Carboxamide
Length = 380
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 51 IGEGAYGMVCSAYDNVNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 104
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 22/114 (19%)
Query: 455 EEIIRATNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQ---QEFLNE 511
E+++ N G +G G GSV + L + +K + + + Q +EFL+E
Sbjct: 27 EDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSE 86
Query: 512 VNALTKIRHRNIVKFYGFCSHA-------------------LHSFVVYEYLEMG 546
+ H N+++ G C LH++++Y LE G
Sbjct: 87 AACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETG 140
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 446 LTFDGKIVHEEIIRATNNFDDGHCIG---NGGQGSVYKAK------LPTGEIVDVKKFHS 496
L F +E + R N D IG +G G VYKA+ L +++D K
Sbjct: 18 LYFQSMKQYEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKS--- 74
Query: 497 PLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+E+ ++++ E++ L H NIVK + + +++ E+ G++
Sbjct: 75 --EEEL---EDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAV 121
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 5 VEDWDLVQTLGEGAAGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICI 57
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 58 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 98
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICI 57
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 58 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 98
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICI 58
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 59 NAMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 99
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICI 57
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 58 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 98
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICI 58
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 59 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 99
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 107/270 (39%), Gaps = 49/270 (18%)
Query: 87 SSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTS 146
++P EI +L DLQ N ++ L +L L L NK+S +F+ L
Sbjct: 46 KAVPKEISPDTTLLDLQ--NNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103
Query: 147 LSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHI 206
L LY+ +N L + P NL +SL L + N I
Sbjct: 104 LQKLYISKNHLVEIPP----------------------------NLPSSLVELRIHDNRI 135
Query: 207 VGEIPLGHGMLSSL-----IQLTLNNNELSGQLSPELGSLIQLEYLDLSA---NTFHKSI 258
++P G+ S L I++ N E SG P ++L YL +S K +
Sbjct: 136 -RKVP--KGVFSGLRNMNCIEMGGNPLENSG-FEPGAFDGLKLNYLRISEAKLTGIPKDL 191
Query: 259 PESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEK 318
PE+L+ L+L +N+ + + L L L HN R + + +L +
Sbjct: 192 PETLNE------LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245
Query: 319 LNLSHNNLSGSIPRCFEEMHWLSCIDISYN 348
L+L +N LS +P ++ L + + N
Sbjct: 246 LHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR 519
++ + +G G G V K TG+ VK + ++ L EV L ++
Sbjct: 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLD 84
Query: 520 HRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
H NI+K Y F + ++V E G L
Sbjct: 85 HPNIMKLYEFFEDKGYFYLVGEVYTGGEL 113
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICI 57
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 58 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 98
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICI 57
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 58 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 98
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICI 57
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 58 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 98
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 478 VYKAKLPTGEIVD----VKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA 533
+ K++ G D ++KFH +E NE++ L + H NI+K +
Sbjct: 69 IKKSQFDKGRYSDDNKNIEKFH----------EEIYNEISLLKSLDHPNIIKLFDVFEDK 118
Query: 534 LHSFVVYEYLEMGSLAMNLSN 554
+ ++V E+ E G L + N
Sbjct: 119 KYFYLVTEFYEGGELFEQIIN 139
>pdb|1E3Y|A Chain A, Death Domain From Human FaddMORT1
pdb|1E41|A Chain A, Death Domain From Human FaddMORT1
Length = 104
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 21 GAPMEEEDL---IEKILDGLGDDYKELVRAVQARDTSI-SFDELHEKLLT 66
G+ M EEDL I D +G D++ L R ++ DT I S ++ + + LT
Sbjct: 1 GSHMGEEDLCAAFNVICDNVGKDWRRLARQLKVSDTKIDSIEDRYPRNLT 50
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICI 56
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 57 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 97
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICI 57
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 58 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 98
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 462 NNFDDGHCIGNGGQGSVYKA-KLPTGEIVDVKKFHSPLPDEMACQQE---FLNEVNALTK 517
NN G +G G G V +A G+ V K + A E ++E+ ++
Sbjct: 46 NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSH 105
Query: 518 I-RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAE 559
+ +H NIV G C+H V+ EY G L L A A+
Sbjct: 106 LGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEAD 148
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICI 57
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 58 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 98
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 463 NFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNALT 516
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 8 DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICINK 60
Query: 517 KIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 99
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 463 NFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHR 521
+F + IG+GG G V+KAK G+ +K+ +E A + EV AL K+ H
Sbjct: 12 DFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRV--KYNNEKAER-----EVKALAKLDHV 64
Query: 522 NIVKFYG 528
NIV + G
Sbjct: 65 NIVHYNG 71
>pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human
Tbk1 Kinase- Uld Domain
pdb|4EUT|B Chain B, Structure Of Bx-795 Complexed With Unphosphorylated Human
Tbk1 Kinase- Uld Domain
Length = 396
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 470 IGNGGQGSVYKAK-LPTGEIVDVKKFHS-----PLPDEMACQQEFLNEVNALTKIRHRNI 523
+G G +V++ + TG++ +K F++ P+ +M E L K+ H+NI
Sbjct: 17 LGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQM-------REFEVLKKLNHKNI 69
Query: 524 VKFYGFCSHAL--HSFVVYEYLEMGSLAMNLSNDAAA 558
VK + H ++ E+ GSL L + A
Sbjct: 70 VKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNA 106
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICI 58
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 59 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 99
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICI 57
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 58 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 98
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 463 NFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNALT 516
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 7 DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICINK 59
Query: 517 KIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 98
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICI 58
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 59 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 99
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICI 58
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 59 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 99
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLPTGE------IVDVKKFHSPLPDEMACQQEFLNEVNA 514
++D +G G G V A E IVD+K+ + C + E+
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICI 58
Query: 515 LTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSND 555
+ H N+VKFYG ++ EY G L + D
Sbjct: 59 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 99
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 462 NNFDDGHCIGNGGQGSVYKA-KLPTGEIVDVKKFHSPLPDEMACQQE---FLNEVNALTK 517
NN G +G G G V +A G+ V K + A E ++E+ ++
Sbjct: 31 NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSH 90
Query: 518 I-RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAA 558
+ +H NIV G C+H V+ EY G L L A A
Sbjct: 91 LGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEA 132
>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX
Length = 358
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 29 IGEGAYGMVCSAYDNLNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 82
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR 519
++ + +G G G V K TG+ VK + ++ L EV L ++
Sbjct: 48 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLD 107
Query: 520 HRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
H NI+K Y F + ++V E G L
Sbjct: 108 HPNIMKLYEFFEDKGYFYLVGEVYTGGEL 136
>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 365
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 36 IGEGAYGMVCSAYDNLNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 89
>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
pdb|4EUU|B Chain B, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
Length = 319
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 470 IGNGGQGSVYKAK-LPTGEIVDVKKFHS-----PLPDEMACQQEFLNEVNALTKIRHRNI 523
+G G +V++ + TG++ +K F++ P+ +M E L K+ H+NI
Sbjct: 17 LGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQM-------REFEVLKKLNHKNI 69
Query: 524 VKFYGFCSHAL--HSFVVYEYLEMGSLAMNLSNDAAA 558
VK + H ++ E+ GSL L + A
Sbjct: 70 VKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNA 106
>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In
Complex With
(4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin
2-Yl]amino}phenyl)acetic Acid
Length = 366
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 37 IGEGAYGMVCSAYDNLNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 90
>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently
Bound
pdb|3C9W|B Chain B, Crystal Structure Of Erk-2 With Hypothemycin Covalently
Bound
Length = 357
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 28 IGEGAYGMVCSAYDNLNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 81
>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2
Length = 364
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 35 IGEGAYGMVCSAYDNLNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 88
>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived
From Mkp3
pdb|2FYS|A Chain A, Crystal Structure Of Erk2 Complex With Kim Peptide Derived
From Mkp3
pdb|1ERK|A Chain A, Structure Of Signal-Regulated Kinase
pdb|3ERK|A Chain A, The Complex Structure Of The Map Kinase Erk2SB220025
pdb|4ERK|A Chain A, The Complex Structure Of The Map Kinase Erk2OLOMOUCINE
pdb|3QYI|A Chain A, Map Kinase Erk2 Complexed With
1,1-Dioxo-2,3-Dihydrothiophen-3-Yl Benzenesulfonate
Length = 364
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 35 IGEGAYGMVCSAYDNLNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 88
>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e)
Length = 358
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 29 IGEGAYGMVCSAYDNLNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 82
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR 519
++ + +G G G V K TG+ VK + ++ L EV L ++
Sbjct: 49 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLD 108
Query: 520 HRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
H NI+K Y F + ++V E G L
Sbjct: 109 HPNIMKLYEFFEDKGYFYLVGEVYTGGEL 137
>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor
pdb|3QYZ|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor
pdb|4GT3|A Chain A, Atp-Bound Form Of The Erk2 Kinase
pdb|4GVA|A Chain A, Adp-Bound Form Of The Erk2 Kinase
Length = 364
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 35 IGEGAYGMVCSAYDNLNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 88
>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|C Chain C, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 364
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 35 IGEGAYGMVCSAYDNLNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 88
>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2
Length = 365
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 470 IGNGGQGSVYKAKLPTGEI-VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIV 524
IG G G V A ++ V +KK SP + CQ+ L E+ L + RH NI+
Sbjct: 36 IGEGAYGMVCSAYDNLNKVRVAIKKI-SPFEHQTYCQRT-LREIKILLRFRHENII 89
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 454 HEEIIRATNNFDDGHCIGNGGQ-GSVYKAK------LPTGEIVDVKKFHSPLPDEMACQQ 506
+E + R N D IG G G VYKA+ L +++D K +E+ +
Sbjct: 1 YEHVTRDLNPEDFWEIIGELGDFGKVYKAQNKETSVLAAAKVIDTKS-----EEEL---E 52
Query: 507 EFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+++ E++ L H NIVK + + +++ E+ G++
Sbjct: 53 DYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAV 94
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 470 IGNGGQGSVYKA-KLPTGEIVDVKKFHSPLPDEMACQQ--EFLNEVNALTKIRHRNIVKF 526
+G+G G+VYK +P GE V + L + + EF++E + + H ++V+
Sbjct: 46 LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRL 105
Query: 527 YGFC 530
G C
Sbjct: 106 LGVC 109
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 470 IGNGGQGSVYKA-KLPTGEIVDVKKFHSPLPDEMACQQE---FLNEVNALTKIRHRNIVK 525
IG G G V A + TG+ V VKK ++ QQ NEV + H N+V
Sbjct: 53 IGEGSTGIVCIATEKHTGKQVAVKKM------DLRKQQRRELLFNEVVIMRDYHHDNVVD 106
Query: 526 FYGFCSHALHSFVVYEYLEMGSLA 549
Y +VV E+LE G+L
Sbjct: 107 MYSSYLVGDELWVVMEFLEGGALT 130
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 470 IGNGGQGSVYKA-KLPTGEIVDVKKFHSPLPDEMACQQ--EFLNEVNALTKIRHRNIVKF 526
+G+G G+VYK +P GE V + L + + EF++E + + H ++V+
Sbjct: 23 LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRL 82
Query: 527 YGFC 530
G C
Sbjct: 83 LGVC 86
>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
pdb|3MA6|B Chain B, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
Length = 298
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 461 TNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR 519
++ + +G G G V K TG+ VK + ++ L EV L ++
Sbjct: 31 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLD 90
Query: 520 HRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
H NI+K Y F + ++V E G L
Sbjct: 91 HPNIMKLYEFFEDKGYFYLVGEVYTGGEL 119
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 286 IEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLS-----GSIPR 332
+E+L+ ++ LDLSHN R +P + +++ LE L S N L ++PR
Sbjct: 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPR 509
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 286 IEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLS-----GSIPR 332
+E+L+ ++ LDLSHN R +P + +++ LE L S N L ++PR
Sbjct: 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPR 509
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 470 IGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYG 528
+G G +VYK K T +V +K+ + C + EV+ L ++H NIV +
Sbjct: 10 LGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTA--IREVSLLKDLKHANIVTLHD 67
Query: 529 FCSHALHSFVVYEYLE 544
+V+EYL+
Sbjct: 68 IIHTEKSLTLVFEYLD 83
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 463 NFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKF---HSPLPDEMACQQEFLNEVNALTKIR 519
+F + IG+GG G V+KAK +D K + +E A + EV AL K+
Sbjct: 13 DFKEIELIGSGGFGQVFKAK----HRIDGKTYVIRRVKYNNEKAER-----EVKALAKLD 63
Query: 520 HRNIVKFYG 528
H NIV + G
Sbjct: 64 HVNIVHYNG 72
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 450 GKIVHEEIIRATNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEF 508
G V ++ + +G G G V K TG+ VK + ++
Sbjct: 14 GXFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESL 73
Query: 509 LNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
L EV L ++ H NI K Y F + ++V E G L
Sbjct: 74 LREVQLLKQLDHPNIXKLYEFFEDKGYFYLVGEVYTGGEL 113
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 474 GQGSVYKAKLP----TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
G+GS K KL TG+ V +K + + + Q E++ L +RH +I+K Y
Sbjct: 13 GEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDV 72
Query: 530 CSHALHSFVVYEYLEMGSLAMNLSNDAAAEQ 560
+V EY + D +EQ
Sbjct: 73 IKSKDEIIMVIEYAGNELFDYIVQRDKMSEQ 103
>pdb|1MUS|A Chain A, Crystal Structure Of Tn5 Transposase Complexed With
Resolved Outside End Dna
Length = 477
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 88 SIP-----DEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFA 142
SIP D+ G K+ + S ++ +G I L GN+T VL N G PL +
Sbjct: 240 SIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWL 299
Query: 143 NLTS 146
LTS
Sbjct: 300 LLTS 303
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 474 GQGSVYKAKLP----TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
G G+ K K+ TG V VK + + + E+ L RH +I+K Y
Sbjct: 20 GVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQV 79
Query: 530 CSHALHSFVVYEYLEMGSLAMNLSNDAAAEQ 560
S F+V EY+ G L + E+
Sbjct: 80 ISTPTDFFMVMEYVSGGELFDYICKHGRVEE 110
>pdb|4DM0|A Chain A, Tn5 Transposase: 20mer Outside End 2 Mn Complex
Length = 477
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 88 SIP-----DEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFA 142
SIP D+ G K+ + S ++ +G I L GN+T VL N G PL +
Sbjct: 240 SIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWL 299
Query: 143 NLTS 146
LTS
Sbjct: 300 LLTS 303
>pdb|1MM8|A Chain A, Crystal Structure Of Tn5 Transposase Complexed With Me Dna
Length = 481
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 88 SIP-----DEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFA 142
SIP D+ G K+ + S ++ +G I L GN+T VL N G PL +
Sbjct: 244 SIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWL 303
Query: 143 NLTS 146
LTS
Sbjct: 304 LLTS 307
>pdb|1MUH|A Chain A, Crystal Structure Of Tn5 Transposase Complexed With
Transposon End Dna
Length = 481
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 88 SIP-----DEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFA 142
SIP D+ G K+ + S ++ +G I L GN+T VL N G PL +
Sbjct: 244 SIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWL 303
Query: 143 NLTS 146
LTS
Sbjct: 304 LLTS 307
>pdb|3ECP|A Chain A, Crystal Structure Of Tn5 Transposase Complexed With 5'
Phosphorylated Transposon End Dna
Length = 477
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 88 SIP-----DEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFA 142
SIP D+ G K+ + S ++ +G I L GN+T VL N G PL +
Sbjct: 240 SIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWL 299
Query: 143 NLTS 146
LTS
Sbjct: 300 LLTS 303
>pdb|1B7E|A Chain A, Transposase Inhibitor
Length = 420
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 89 IPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTS 146
+ D+ G K+ + S ++ +G I L GN+T VL N G PL + LTS
Sbjct: 191 VVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTS 248
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 474 GQGSVYKAKLP----TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGF 529
G G+ K K+ TG V VK + + + E+ L RH +I+K Y
Sbjct: 20 GVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQV 79
Query: 530 CSHALHSFVVYEYLEMGSLAMNLSNDAAAEQ 560
S F+V EY+ G L + E+
Sbjct: 80 ISTPTDFFMVMEYVSGGELFDYICKHGRVEE 110
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 462 NNFDDGHCIGNGGQGSVYKA-KLPTGEIVDVKKFHSPLPDEMACQQE---FLNEVNALTK 517
NN G +G G G V +A G+ V K + A E ++E+ ++
Sbjct: 46 NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSH 105
Query: 518 I-RHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
+ +H NIV G C+H V+ EY G L
Sbjct: 106 LGQHENIVNLLGACTHGGPVLVITEYCCYGDL 137
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 462 NNFDDGHCIGNGGQGSVYKA------KLPTGEIVDVKKFHSPL-PDEMACQQEFLNEVNA 514
NN G +G G G V +A K V VK S DE ++ ++E+
Sbjct: 46 NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADE---KEALMSELKI 102
Query: 515 LTKI-RHRNIVKFYGFCSHALHSFVVYEYLEMGSL 548
++ + +H NIV G C+H V+ EY G L
Sbjct: 103 MSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDL 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,207,595
Number of Sequences: 62578
Number of extensions: 678919
Number of successful extensions: 3187
Number of sequences better than 100.0: 507
Number of HSP's better than 100.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 257
Number of HSP's that attempted gapping in prelim test: 2023
Number of HSP's gapped (non-prelim): 825
length of query: 571
length of database: 14,973,337
effective HSP length: 104
effective length of query: 467
effective length of database: 8,465,225
effective search space: 3953260075
effective search space used: 3953260075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)