Query 044615
Match_columns 571
No_of_seqs 660 out of 4594
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 08:24:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.1E-43 3.6E-48 395.8 29.0 346 39-387 309-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 6.7E-41 2.3E-45 373.2 29.2 327 39-373 284-716 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 2.6E-38 9E-43 331.8 27.2 331 36-376 21-410 (455)
4 2id5_A Lingo-1, leucine rich r 100.0 1.1E-37 3.7E-42 329.1 25.8 332 36-377 22-359 (477)
5 3vq2_A TLR4, TOLL-like recepto 100.0 5.2E-37 1.8E-41 333.8 29.6 114 42-162 50-170 (606)
6 3v47_A TOLL-like receptor 5B a 100.0 3.9E-37 1.3E-41 322.9 23.6 311 41-358 47-415 (455)
7 4eco_A Uncharacterized protein 100.0 3.4E-37 1.2E-41 335.7 23.2 320 40-372 198-577 (636)
8 4eco_A Uncharacterized protein 100.0 2.2E-37 7.5E-42 337.2 20.6 305 62-372 202-547 (636)
9 2id5_A Lingo-1, leucine rich r 100.0 1.6E-36 5.4E-41 320.2 26.3 318 51-376 14-335 (477)
10 2z7x_B TOLL-like receptor 1, v 100.0 6.4E-36 2.2E-40 319.1 29.6 315 39-372 14-455 (520)
11 3t6q_A CD180 antigen; protein- 100.0 1.9E-35 6.6E-40 321.5 32.9 323 43-373 52-437 (606)
12 3t6q_A CD180 antigen; protein- 100.0 9.9E-36 3.4E-40 323.7 27.7 281 92-375 273-561 (606)
13 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-35 6.7E-40 318.2 29.2 322 36-375 42-511 (562)
14 3j0a_A TOLL-like receptor 5; m 100.0 6.9E-36 2.4E-40 336.2 24.6 210 162-376 283-562 (844)
15 4ecn_A Leucine-rich repeat pro 100.0 1.6E-35 5.5E-40 328.2 26.9 319 40-373 440-818 (876)
16 3j0a_A TOLL-like receptor 5; m 100.0 7.9E-35 2.7E-39 327.6 30.0 307 36-353 15-377 (844)
17 1ziw_A TOLL-like receptor 3; i 100.0 7.9E-35 2.7E-39 320.9 28.5 336 41-377 239-625 (680)
18 2z63_A TOLL-like receptor 4, v 100.0 3.4E-35 1.2E-39 317.1 24.3 158 215-373 344-506 (570)
19 1ogq_A PGIP-2, polygalacturona 100.0 4.1E-35 1.4E-39 291.3 20.8 259 97-384 50-312 (313)
20 2z63_A TOLL-like receptor 4, v 100.0 3.8E-34 1.3E-38 309.0 29.9 134 239-373 344-482 (570)
21 4ecn_A Leucine-rich repeat pro 100.0 3.6E-35 1.2E-39 325.4 22.0 276 89-372 481-787 (876)
22 3vq2_A TLR4, TOLL-like recepto 100.0 2.8E-34 9.7E-39 312.3 28.5 327 41-377 73-561 (606)
23 1ziw_A TOLL-like receptor 3; i 100.0 5.6E-34 1.9E-38 314.2 29.2 323 43-372 44-441 (680)
24 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-34 5.5E-39 310.4 23.8 321 42-374 44-486 (549)
25 3o6n_A APL1; leucine-rich repe 100.0 4.5E-34 1.6E-38 293.3 26.1 307 45-376 42-354 (390)
26 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-33 4E-38 301.6 28.5 307 51-374 3-434 (520)
27 4g8a_A TOLL-like receptor 4; l 100.0 2.8E-33 9.5E-38 306.0 31.3 333 35-376 41-582 (635)
28 3oja_B Anopheles plasmodium-re 100.0 8.2E-34 2.8E-38 307.3 26.2 306 46-376 49-360 (597)
29 4fmz_A Internalin; leucine ric 100.0 4.9E-33 1.7E-37 280.9 30.0 305 41-373 37-345 (347)
30 2z81_A CD282 antigen, TOLL-lik 100.0 7.1E-34 2.4E-38 305.4 24.3 326 36-373 16-463 (549)
31 1ogq_A PGIP-2, polygalacturona 100.0 1E-34 3.5E-39 288.4 16.2 252 66-349 50-302 (313)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.4E-33 1.5E-37 299.8 29.4 311 48-374 31-486 (562)
33 1o6v_A Internalin A; bacterial 100.0 4.6E-32 1.6E-36 284.9 30.5 298 43-372 63-364 (466)
34 4fmz_A Internalin; leucine ric 100.0 5.8E-32 2E-36 273.1 29.8 283 42-351 60-346 (347)
35 3o6n_A APL1; leucine-rich repe 100.0 1.5E-32 5.1E-37 282.0 24.9 312 38-376 58-376 (390)
36 3oja_B Anopheles plasmodium-re 100.0 1.2E-32 4.1E-37 298.1 25.3 312 39-377 65-383 (597)
37 1xku_A Decorin; proteoglycan, 100.0 5.3E-32 1.8E-36 271.3 28.0 247 97-351 52-306 (330)
38 2ft3_A Biglycan; proteoglycan, 100.0 2.1E-32 7.2E-37 274.5 24.3 246 97-351 54-307 (332)
39 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-31 5.4E-36 278.9 28.4 323 17-374 11-352 (457)
40 1xku_A Decorin; proteoglycan, 100.0 1.9E-31 6.5E-36 267.3 27.1 287 48-349 31-330 (330)
41 1o6v_A Internalin A; bacterial 100.0 5E-31 1.7E-35 277.0 30.2 298 45-374 43-344 (466)
42 2ft3_A Biglycan; proteoglycan, 100.0 1.8E-31 6.3E-36 267.6 24.8 286 48-349 33-331 (332)
43 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-30 6E-35 271.0 27.8 282 38-353 55-354 (457)
44 4g8a_A TOLL-like receptor 4; l 100.0 2.3E-30 8E-35 282.8 29.0 307 41-355 69-584 (635)
45 2z80_A TOLL-like receptor 2, v 100.0 1.1E-30 3.9E-35 264.1 17.8 275 70-356 35-319 (353)
46 2z66_A Variable lymphocyte rec 100.0 2.3E-30 7.7E-35 256.6 16.8 232 97-354 28-264 (306)
47 3zyi_A Leucine-rich repeat-con 100.0 8.1E-29 2.8E-33 259.1 24.9 235 89-352 69-304 (452)
48 2z80_A TOLL-like receptor 2, v 100.0 2.6E-29 9E-34 254.1 20.0 277 95-376 29-316 (353)
49 2z66_A Variable lymphocyte rec 100.0 9.6E-30 3.3E-34 252.1 16.5 244 51-328 10-262 (306)
50 4fcg_A Uncharacterized protein 100.0 7.2E-29 2.5E-33 247.8 22.0 237 95-352 79-315 (328)
51 4fcg_A Uncharacterized protein 100.0 4.2E-29 1.4E-33 249.5 20.0 226 64-326 79-313 (328)
52 3zyj_A Leucine-rich repeat-con 100.0 1.2E-28 4.2E-33 256.8 23.9 236 88-352 57-293 (440)
53 3zyi_A Leucine-rich repeat-con 100.0 2E-28 6.7E-33 256.2 24.6 243 50-302 56-302 (452)
54 1ozn_A Reticulon 4 receptor; N 100.0 8.1E-29 2.8E-33 242.8 19.3 252 100-356 14-266 (285)
55 3zyj_A Leucine-rich repeat-con 100.0 3.6E-28 1.2E-32 253.3 24.5 245 49-303 44-292 (440)
56 1ozn_A Reticulon 4 receptor; N 100.0 5.9E-29 2E-33 243.7 17.1 256 69-336 14-270 (285)
57 1z7x_W Ribonuclease inhibitor; 100.0 2.5E-30 8.4E-35 271.6 7.4 307 42-352 50-412 (461)
58 1wwl_A Monocyte differentiatio 100.0 4.5E-30 1.5E-34 255.0 8.1 250 93-352 39-310 (312)
59 1jl5_A Outer protein YOPM; leu 100.0 1.1E-27 3.8E-32 249.6 26.3 285 48-374 91-409 (454)
60 1z7x_W Ribonuclease inhibitor; 100.0 1.8E-30 6.3E-35 272.6 3.1 322 44-372 24-409 (461)
61 3o53_A Protein LRIM1, AGAP0063 100.0 1.4E-29 4.7E-34 252.1 8.1 266 68-355 12-280 (317)
62 1jl5_A Outer protein YOPM; leu 100.0 1.2E-26 4E-31 241.9 29.2 292 39-375 49-371 (454)
63 3oja_A Leucine-rich immune mol 100.0 1E-28 3.6E-33 259.9 12.9 236 95-345 32-269 (487)
64 1wwl_A Monocyte differentiatio 100.0 3.3E-29 1.1E-33 248.8 6.2 246 65-328 42-310 (312)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-28 6.3E-33 243.9 9.0 261 49-331 11-280 (317)
66 3oja_A Leucine-rich immune mol 99.9 7.9E-28 2.7E-32 253.2 10.2 218 119-351 32-250 (487)
67 3g06_A SSPH2 (leucine-rich rep 99.9 2.5E-25 8.5E-30 238.9 28.1 259 49-356 41-302 (622)
68 2z62_A TOLL-like receptor 4, v 99.9 2.4E-25 8.1E-30 217.0 21.2 228 101-357 11-243 (276)
69 2z62_A TOLL-like receptor 4, v 99.9 2.4E-25 8.2E-30 216.9 20.8 214 88-329 21-239 (276)
70 3g06_A SSPH2 (leucine-rich rep 99.9 3.4E-24 1.2E-28 230.2 28.2 257 67-374 41-297 (622)
71 2o6q_A Variable lymphocyte rec 99.9 5.3E-24 1.8E-28 206.6 22.1 203 98-328 17-219 (270)
72 2o6q_A Variable lymphocyte rec 99.9 7.1E-24 2.4E-28 205.7 22.4 206 122-355 17-222 (270)
73 3rfs_A Internalin B, repeat mo 99.9 4.5E-25 1.5E-29 214.4 13.7 210 118-339 38-247 (272)
74 3rfs_A Internalin B, repeat mo 99.9 3.3E-25 1.1E-29 215.3 12.6 220 123-356 21-240 (272)
75 2ca6_A RAN GTPase-activating p 99.9 4.1E-26 1.4E-30 233.6 5.7 255 88-354 23-319 (386)
76 3goz_A Leucine-rich repeat-con 99.9 2.3E-25 7.9E-30 225.8 10.1 256 71-353 3-299 (362)
77 3goz_A Leucine-rich repeat-con 99.9 8.5E-26 2.9E-30 229.0 7.0 257 52-331 2-301 (362)
78 1p9a_G Platelet glycoprotein I 99.9 1E-23 3.6E-28 206.4 21.1 204 92-327 5-208 (290)
79 1p9a_G Platelet glycoprotein I 99.9 6.3E-24 2.2E-28 207.9 19.5 204 141-352 6-209 (290)
80 2ca6_A RAN GTPase-activating p 99.9 1.2E-25 4E-30 230.2 6.4 254 99-374 11-316 (386)
81 2xwt_C Thyrotropin receptor; s 99.9 1.8E-23 6.2E-28 199.0 16.6 185 88-279 25-218 (239)
82 2ast_B S-phase kinase-associat 99.9 9.3E-25 3.2E-29 219.2 8.0 250 99-357 49-312 (336)
83 4glp_A Monocyte differentiatio 99.9 1E-23 3.6E-28 208.9 14.0 203 96-304 90-308 (310)
84 2ast_B S-phase kinase-associat 99.9 2.6E-24 8.8E-29 215.9 8.8 235 97-336 70-315 (336)
85 4glp_A Monocyte differentiatio 99.9 5.3E-23 1.8E-27 203.8 16.9 229 97-351 64-307 (310)
86 2xwt_C Thyrotropin receptor; s 99.9 6.2E-23 2.1E-27 195.3 15.2 196 122-348 32-236 (239)
87 3m19_A Variable lymphocyte rec 99.9 4.3E-22 1.5E-26 190.9 19.1 179 171-353 16-194 (251)
88 3m19_A Variable lymphocyte rec 99.9 8.1E-22 2.8E-26 189.0 19.2 179 98-280 15-193 (251)
89 1h6u_A Internalin H; cell adhe 99.9 3.4E-22 1.2E-26 197.6 17.0 191 120-327 40-230 (308)
90 1h6u_A Internalin H; cell adhe 99.9 3.3E-22 1.1E-26 197.7 16.8 194 94-304 38-231 (308)
91 3ogk_B Coronatine-insensitive 99.9 7.3E-24 2.5E-28 229.6 4.5 319 49-372 139-524 (592)
92 3ogk_B Coronatine-insensitive 99.9 3.3E-23 1.1E-27 224.4 8.2 303 44-353 160-528 (592)
93 4ay9_X Follicle-stimulating ho 99.9 9.2E-21 3.1E-25 191.0 18.5 189 88-280 23-216 (350)
94 4ay9_X Follicle-stimulating ho 99.9 9E-21 3.1E-25 191.0 18.0 240 100-348 12-256 (350)
95 2p1m_B Transport inhibitor res 99.8 3.9E-22 1.3E-26 216.0 3.1 319 45-372 102-492 (594)
96 2o6s_A Variable lymphocyte rec 99.8 3.2E-20 1.1E-24 172.5 15.2 131 122-253 29-159 (208)
97 2o6s_A Variable lymphocyte rec 99.8 3.3E-20 1.1E-24 172.3 15.3 170 88-267 21-190 (208)
98 3cvr_A Invasion plasmid antige 99.8 5E-20 1.7E-24 195.4 16.7 193 98-336 60-252 (571)
99 3cvr_A Invasion plasmid antige 99.8 3E-20 1E-24 197.1 14.7 189 67-291 60-255 (571)
100 2p1m_B Transport inhibitor res 99.8 1.7E-21 5.9E-26 211.0 3.5 326 42-373 123-518 (594)
101 1h6t_A Internalin B; cell adhe 99.8 5.9E-20 2E-24 179.8 12.0 170 94-278 43-212 (291)
102 1m9s_A Internalin B; cell inva 99.8 9.7E-20 3.3E-24 195.3 14.5 174 93-281 39-212 (605)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 4E-19 1.4E-23 166.3 15.8 156 197-355 14-170 (220)
104 2xot_A Amphoterin-induced prot 99.8 1.6E-19 5.4E-24 182.6 13.9 157 196-352 41-203 (361)
105 2v9t_B SLIT homolog 2 protein 99.8 4.7E-19 1.6E-23 165.9 15.7 134 219-352 33-166 (220)
106 1h6t_A Internalin B; cell adhe 99.8 4.2E-19 1.4E-23 173.8 15.8 186 126-352 29-214 (291)
107 2xot_A Amphoterin-induced prot 99.8 4.2E-19 1.4E-23 179.6 14.4 177 100-280 21-203 (361)
108 1m9s_A Internalin B; cell inva 99.8 6.9E-19 2.4E-23 188.7 15.7 192 96-304 20-211 (605)
109 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-18 4.8E-23 162.6 15.3 153 173-329 15-168 (220)
110 2v9t_B SLIT homolog 2 protein 99.8 1.8E-18 6E-23 162.0 15.9 150 100-253 14-163 (220)
111 3e6j_A Variable lymphocyte rec 99.8 2.2E-18 7.6E-23 162.4 16.6 137 218-355 40-176 (229)
112 1dce_A Protein (RAB geranylger 99.8 8.7E-22 3E-26 210.0 -8.0 188 118-329 346-548 (567)
113 4asz_A BDNF/NT-3 growth factor 99.8 4.2E-19 1.4E-23 173.3 9.1 106 462-570 13-134 (299)
114 3e6j_A Variable lymphocyte rec 99.8 6.4E-18 2.2E-22 159.2 16.7 134 97-256 40-173 (229)
115 4aoj_A High affinity nerve gro 99.8 8.9E-19 3E-23 173.4 9.8 106 462-570 41-164 (329)
116 4gt4_A Tyrosine-protein kinase 99.8 1.3E-18 4.4E-23 170.6 10.6 106 463-570 27-151 (308)
117 1dce_A Protein (RAB geranylger 99.8 1.1E-20 3.7E-25 201.5 -4.9 204 94-321 346-567 (567)
118 4ezg_A Putative uncharacterize 99.8 4.9E-18 1.7E-22 156.2 12.8 151 94-253 41-192 (197)
119 4ezg_A Putative uncharacterize 99.8 1.1E-17 3.9E-22 153.7 14.8 149 196-352 46-195 (197)
120 4b9d_A Serine/threonine-protei 99.7 3.3E-18 1.1E-22 169.4 11.7 104 462-567 24-128 (350)
121 1xeu_A Internalin C; cellular 99.7 8.9E-19 3E-23 168.7 6.6 170 96-281 18-187 (263)
122 1xeu_A Internalin C; cellular 99.7 2E-18 6.9E-23 166.2 8.3 81 242-328 106-186 (263)
123 4b8c_D Glucose-repressible alc 99.7 1.1E-18 3.8E-23 191.8 5.5 185 49-260 174-359 (727)
124 4b8c_D Glucose-repressible alc 99.7 2.2E-18 7.7E-23 189.4 6.9 224 97-352 173-405 (727)
125 3omv_A RAF proto-oncogene seri 99.7 1.9E-17 6.6E-22 161.5 12.2 103 462-570 36-138 (307)
126 4aw0_A HPDK1, 3-phosphoinositi 99.7 2.8E-18 9.5E-23 167.1 6.2 94 462-555 32-126 (311)
127 1w8a_A SLIT protein; signaling 99.7 1.7E-17 5.6E-22 151.8 10.0 131 196-329 10-141 (192)
128 3sb4_A Hypothetical leucine ri 99.7 1.8E-17 6.2E-22 165.3 10.3 235 96-343 48-326 (329)
129 1w8a_A SLIT protein; signaling 99.7 3.5E-17 1.2E-21 149.7 10.9 129 172-304 11-140 (192)
130 3sb4_A Hypothetical leucine ri 99.7 5.6E-17 1.9E-21 161.8 13.3 220 96-321 100-328 (329)
131 3hyh_A Carbon catabolite-derep 99.7 3E-17 1E-21 157.6 10.6 104 462-569 13-117 (275)
132 4fih_A Serine/threonine-protei 99.7 1.9E-17 6.5E-22 163.7 8.8 101 462-569 74-175 (346)
133 4g31_A Eukaryotic translation 99.7 4.5E-17 1.5E-21 159.1 11.2 105 462-568 5-122 (299)
134 3fpq_A Serine/threonine-protei 99.7 5.1E-17 1.8E-21 157.3 9.9 102 465-570 29-135 (290)
135 4fie_A Serine/threonine-protei 99.7 5.5E-17 1.9E-21 164.5 10.4 101 462-569 151-252 (423)
136 4g3f_A NF-kappa-beta-inducing 99.7 7.7E-17 2.6E-21 158.9 9.0 99 461-570 57-156 (336)
137 2ell_A Acidic leucine-rich nuc 99.7 2.7E-16 9.1E-21 140.5 11.8 135 218-354 24-163 (168)
138 3hmm_A TGF-beta receptor type- 99.7 7.8E-17 2.7E-21 158.1 7.7 99 463-570 4-106 (303)
139 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.7E-20 136.5 13.1 132 121-255 24-160 (168)
140 2je0_A Acidic leucine-rich nuc 99.6 4.6E-16 1.6E-20 136.0 10.0 127 218-346 17-148 (149)
141 4fdw_A Leucine rich hypothetic 99.6 1.5E-14 5E-19 147.5 21.6 248 95-356 111-363 (401)
142 3ubd_A Ribosomal protein S6 ki 99.6 5E-17 1.7E-21 158.2 2.8 103 462-568 24-130 (304)
143 2wfh_A SLIT homolog 2 protein 99.6 2.6E-15 8.8E-20 137.2 13.7 110 242-352 31-140 (193)
144 4ase_A Vascular endothelial gr 99.6 4.4E-16 1.5E-20 155.3 8.9 114 455-570 57-191 (353)
145 4fdw_A Leucine rich hypothetic 99.6 3.3E-14 1.1E-18 144.9 22.8 246 92-350 131-382 (401)
146 2je0_A Acidic leucine-rich nuc 99.6 1.5E-15 5.1E-20 132.7 10.3 125 196-322 19-148 (149)
147 2o6r_A Variable lymphocyte rec 99.6 4E-15 1.4E-19 134.0 13.3 114 242-355 28-141 (177)
148 2wfh_A SLIT homolog 2 protein 99.6 7.6E-15 2.6E-19 134.1 14.0 128 197-328 13-140 (193)
149 2o6r_A Variable lymphocyte rec 99.6 8.2E-15 2.8E-19 132.0 14.0 133 196-331 9-141 (177)
150 4b99_A Mitogen-activated prote 99.6 5.8E-15 2E-19 149.9 10.7 103 462-569 54-163 (398)
151 3uto_A Twitchin; kinase, muscl 99.6 4.6E-15 1.6E-19 158.1 10.3 100 462-566 157-257 (573)
152 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-14 5.3E-19 130.0 10.2 133 214-352 15-154 (176)
153 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-14 5E-19 130.2 9.1 134 93-255 15-153 (176)
154 1ds9_A Outer arm dynein; leuci 99.5 3.5E-16 1.2E-20 143.8 -1.8 149 196-351 20-185 (198)
155 1ds9_A Outer arm dynein; leuci 99.5 2.5E-16 8.4E-21 144.8 -4.2 87 93-182 14-106 (198)
156 2qkw_B Protein kinase; three-h 99.5 1.4E-14 4.7E-19 143.9 8.0 113 455-570 32-145 (321)
157 3v5w_A G-protein coupled recep 99.5 9.4E-15 3.2E-19 155.2 7.1 96 461-556 188-287 (689)
158 2nru_A Interleukin-1 receptor- 99.5 9.5E-14 3.2E-18 136.8 13.7 120 450-570 13-139 (307)
159 3uim_A Brassinosteroid insensi 99.5 3.8E-14 1.3E-18 141.0 9.6 118 451-570 19-137 (326)
160 4eqm_A Protein kinase; transfe 99.5 8.6E-14 3E-18 136.3 11.5 106 462-570 11-117 (294)
161 3p86_A Serine/threonine-protei 99.5 2.7E-14 9.2E-19 140.9 7.7 110 459-570 34-143 (309)
162 2c30_A Serine/threonine-protei 99.5 1.5E-13 5.2E-18 136.3 13.1 114 450-570 23-147 (321)
163 3qd2_B Eukaryotic translation 99.5 1.1E-13 3.7E-18 137.9 11.7 106 462-569 6-169 (332)
164 3s95_A LIMK-1, LIM domain kina 99.5 9.6E-14 3.3E-18 137.0 11.1 105 461-570 9-114 (310)
165 4f9c_A Cell division cycle 7-r 99.5 5.8E-14 2E-18 140.9 9.6 91 458-553 17-112 (361)
166 3uqc_A Probable conserved tran 99.5 1.2E-13 4.1E-18 134.6 10.8 93 462-554 31-124 (286)
167 2qol_A Ephrin receptor; recept 99.5 1.3E-13 4.3E-18 139.8 10.9 105 462-570 45-153 (373)
168 3fe3_A MAP/microtubule affinit 99.5 1.2E-13 4.1E-18 137.3 10.5 106 460-569 13-119 (328)
169 4hcu_A Tyrosine-protein kinase 99.5 1.5E-13 5.2E-18 132.6 10.6 103 462-570 10-112 (269)
170 3fxz_A Serine/threonine-protei 99.5 2.5E-13 8.5E-18 133.2 11.9 102 461-569 19-121 (297)
171 3g39_A Variable lymphocyte rec 99.5 2.9E-13 1E-17 120.8 11.3 89 266-354 30-118 (170)
172 2yab_A Death-associated protei 99.5 1.9E-13 6.4E-18 137.7 11.2 107 461-570 11-121 (361)
173 3g39_A Variable lymphocyte rec 99.5 2.8E-13 9.7E-18 120.9 11.1 107 68-184 11-117 (170)
174 3zgw_A Maternal embryonic leuc 99.5 1.5E-13 5E-18 137.6 10.1 105 461-570 9-114 (347)
175 4aw2_A Serine/threonine-protei 99.4 3.3E-14 1.1E-18 146.6 5.1 114 454-569 66-180 (437)
176 2vd5_A DMPK protein; serine/th 99.4 4E-14 1.4E-18 144.9 5.3 114 454-569 53-167 (412)
177 1tki_A Titin; serine kinase, m 99.4 2.6E-13 8.9E-18 134.5 10.9 104 461-570 4-108 (321)
178 2r9u_A Variable lymphocyte rec 99.4 5.3E-13 1.8E-17 119.5 11.7 105 69-183 15-119 (174)
179 2bdw_A Hypothetical protein K1 99.4 3.2E-13 1.1E-17 136.2 11.2 106 461-570 28-134 (362)
180 4euu_A Serine/threonine-protei 99.4 2.5E-13 8.4E-18 134.7 9.9 107 462-570 9-118 (319)
181 3kmu_A ILK, integrin-linked ki 99.4 1.9E-13 6.6E-18 131.9 8.9 106 462-570 10-117 (271)
182 3a8x_A Protein kinase C IOTA t 99.4 2.6E-13 8.8E-18 135.9 10.1 105 462-569 9-115 (345)
183 1o6l_A RAC-beta serine/threoni 99.4 1.2E-13 4E-18 137.8 7.5 105 462-569 5-110 (337)
184 2psq_A Fibroblast growth facto 99.4 2.9E-13 9.9E-18 137.0 10.5 108 461-570 80-209 (370)
185 1fot_A TPK1 delta, CAMP-depend 99.4 1.3E-13 4.3E-18 136.5 7.6 106 461-569 5-111 (318)
186 3v8s_A RHO-associated protein 99.4 4.5E-14 1.5E-18 144.4 4.4 100 456-555 63-163 (410)
187 3tki_A Serine/threonine-protei 99.4 3E-13 1E-17 134.3 9.9 105 461-570 6-111 (323)
188 3kul_A Ephrin type-A receptor 99.4 3.4E-13 1.2E-17 134.0 10.4 105 462-570 49-157 (325)
189 2r9u_A Variable lymphocyte rec 99.4 6.6E-13 2.3E-17 118.9 11.2 88 266-353 33-120 (174)
190 2y0a_A Death-associated protei 99.4 4.8E-13 1.6E-17 133.0 11.4 106 462-570 11-120 (326)
191 3uc3_A Serine/threonine-protei 99.4 4.6E-13 1.6E-17 135.1 11.3 102 461-569 19-121 (361)
192 3sxs_A Cytoplasmic tyrosine-pr 99.4 2.4E-13 8.1E-18 131.1 8.6 104 461-570 7-110 (268)
193 3ork_A Serine/threonine protei 99.4 1.5E-13 5.1E-18 135.7 7.3 106 462-570 12-122 (311)
194 3cbl_A C-FES, proto-oncogene t 99.4 1.7E-13 5.7E-18 139.3 7.7 106 461-570 113-219 (377)
195 4fr4_A YANK1, serine/threonine 99.4 1.5E-13 5.1E-18 139.3 7.4 105 462-569 15-120 (384)
196 1rdq_E PKA C-alpha, CAMP-depen 99.4 1.9E-13 6.4E-18 137.2 7.6 105 462-569 41-146 (350)
197 3txo_A PKC-L, NPKC-ETA, protei 99.4 2.1E-13 7.2E-18 136.9 7.9 107 460-569 21-129 (353)
198 3gen_A Tyrosine-protein kinase 99.4 3.3E-13 1.1E-17 131.2 9.0 104 461-570 23-126 (283)
199 1kob_A Twitchin; kinase, intra 99.4 5.6E-13 1.9E-17 135.5 11.0 105 461-570 50-155 (387)
200 2y94_A 5'-AMP-activated protei 99.4 2.5E-13 8.4E-18 141.6 8.2 107 461-570 15-122 (476)
201 4dc2_A Protein kinase C IOTA t 99.4 2.4E-13 8.2E-18 138.3 8.0 106 461-569 51-158 (396)
202 2wqm_A Serine/threonine-protei 99.4 8.5E-13 2.9E-17 130.2 11.6 110 461-570 31-142 (310)
203 1luf_A Muscle-specific tyrosin 99.4 6.4E-13 2.2E-17 133.0 10.8 110 459-570 44-180 (343)
204 1xjd_A Protein kinase C, theta 99.4 2.1E-13 7.1E-18 136.4 7.1 108 459-569 14-123 (345)
205 3gni_B Strad alpha; kinase fol 99.4 6.5E-13 2.2E-17 135.5 11.0 108 461-570 24-134 (389)
206 1opk_A P150, C-ABL, proto-onco 99.4 3.7E-13 1.3E-17 141.6 9.3 105 461-570 219-324 (495)
207 2rku_A Serine/threonine-protei 99.4 6.2E-13 2.1E-17 130.1 10.3 107 461-570 14-121 (294)
208 3cok_A Serine/threonine-protei 99.4 2.7E-13 9.2E-18 131.5 7.6 108 461-570 10-118 (278)
209 3q5i_A Protein kinase; CDPK, m 99.4 6.2E-13 2.1E-17 140.5 10.8 107 461-570 35-152 (504)
210 2acx_A G protein-coupled recep 99.4 3.1E-13 1E-17 143.0 8.3 109 461-570 183-292 (576)
211 1x8b_A WEE1HU, WEE1-like prote 99.4 5.9E-13 2E-17 129.6 9.7 109 461-570 10-121 (289)
212 2h34_A Serine/threonine-protei 99.4 6.4E-13 2.2E-17 131.0 9.9 107 461-570 33-140 (309)
213 2eue_A Carbon catabolite derep 99.4 1.1E-12 3.8E-17 126.9 11.4 105 462-570 13-118 (275)
214 3soa_A Calcium/calmodulin-depe 99.4 5.4E-13 1.8E-17 138.0 9.6 105 461-569 10-115 (444)
215 3c0i_A Peripheral plasma membr 99.4 2.4E-13 8.2E-18 136.6 6.8 108 462-569 24-135 (351)
216 4eut_A Serine/threonine-protei 99.4 4.8E-13 1.6E-17 136.8 9.0 107 462-570 9-118 (396)
217 1u5q_A Serine/threonine protei 99.4 8.4E-13 2.9E-17 132.4 10.6 105 463-570 55-160 (348)
218 2owb_A Serine/threonine-protei 99.4 7.3E-13 2.5E-17 132.2 10.0 107 461-570 40-147 (335)
219 3t9t_A Tyrosine-protein kinase 99.4 6.6E-13 2.3E-17 127.8 9.4 103 462-570 8-110 (267)
220 3nyv_A Calmodulin-domain prote 99.4 6.6E-13 2.3E-17 139.6 10.2 106 462-570 26-132 (484)
221 2x4f_A Myosin light chain kina 99.4 4.9E-13 1.7E-17 135.4 8.6 100 466-570 93-193 (373)
222 2clq_A Mitogen-activated prote 99.4 2.1E-12 7.1E-17 126.3 12.7 104 463-569 23-127 (295)
223 3h4j_B AMPK kdaid, SNF1-like p 99.4 2.2E-13 7.6E-18 135.7 5.7 106 461-570 8-114 (336)
224 4fs7_A Uncharacterized protein 99.4 2.2E-11 7.4E-16 124.3 20.6 284 43-348 66-376 (394)
225 3vhe_A Vascular endothelial gr 99.4 5.6E-13 1.9E-17 134.4 8.5 100 454-555 14-121 (359)
226 3c4z_A Rhodopsin kinase; Ser/T 99.4 5.5E-13 1.9E-17 140.7 8.6 108 462-569 185-294 (543)
227 3f3z_A Calcium/calmodulin-depe 99.4 9.6E-13 3.3E-17 127.5 9.6 103 462-570 9-112 (277)
228 2w4o_A Calcium/calmodulin-depe 99.4 1E-12 3.4E-17 132.0 10.0 102 461-570 52-154 (349)
229 3l9p_A Anaplastic lymphoma kin 99.4 7.5E-13 2.6E-17 133.8 9.1 107 462-570 71-187 (367)
230 3is5_A Calcium-dependent prote 99.4 6.8E-13 2.3E-17 129.2 8.5 107 462-570 22-130 (285)
231 2w5a_A Serine/threonine-protei 99.4 1E-12 3.5E-17 127.4 9.7 109 461-570 5-117 (279)
232 3un9_A NLR family member X1; l 99.4 4.9E-14 1.7E-18 142.2 0.1 95 242-336 155-261 (372)
233 4f0f_A Serine/threonine-protei 99.4 1.6E-12 5.6E-17 126.6 11.0 105 462-570 19-128 (287)
234 3bhy_A Death-associated protei 99.4 1.1E-12 3.7E-17 127.5 9.7 106 462-570 5-114 (283)
235 3niz_A Rhodanese family protei 99.4 1.1E-12 3.7E-17 129.5 9.8 105 461-569 20-124 (311)
236 3fdn_A Serine/threonine-protei 99.4 3.7E-13 1.3E-17 130.7 6.3 108 460-570 7-115 (279)
237 2a2a_A Death-associated protei 99.4 1E-12 3.5E-17 130.3 9.6 106 462-570 12-121 (321)
238 4agu_A Cyclin-dependent kinase 99.4 2.1E-12 7E-17 127.5 11.6 105 462-570 3-108 (311)
239 2pvf_A Fibroblast growth facto 99.4 1.6E-12 5.3E-17 129.8 10.8 108 461-570 34-163 (334)
240 1qcf_A Haematopoetic cell kina 99.4 6.2E-13 2.1E-17 138.5 8.2 104 461-570 187-290 (454)
241 2h6d_A 5'-AMP-activated protei 99.4 7E-13 2.4E-17 128.4 8.0 107 461-570 10-117 (276)
242 3ugc_A Tyrosine-protein kinase 99.4 5.1E-13 1.7E-17 130.8 7.0 104 462-570 10-120 (295)
243 3a62_A Ribosomal protein S6 ki 99.4 8.6E-13 2.9E-17 131.2 8.8 105 461-568 16-125 (327)
244 4fvq_A Tyrosine-protein kinase 99.4 6.5E-13 2.2E-17 129.5 7.6 104 462-570 8-119 (289)
245 3soc_A Activin receptor type-2 99.4 1.1E-12 3.8E-17 130.2 9.4 101 461-570 23-127 (322)
246 3kk8_A Calcium/calmodulin depe 99.4 1.5E-12 5.2E-17 126.6 10.2 106 461-570 5-111 (284)
247 1fmk_A C-SRC, P60-SRC, tyrosin 99.4 7.2E-13 2.5E-17 137.8 8.3 104 461-570 183-286 (452)
248 2i1m_A Macrophage colony-stimu 99.4 5.6E-13 1.9E-17 132.9 7.1 110 459-570 43-170 (333)
249 2ivs_A Proto-oncogene tyrosine 99.4 1.3E-12 4.6E-17 128.9 9.8 93 461-555 22-120 (314)
250 2zv2_A Calcium/calmodulin-depe 99.4 1.3E-12 4.5E-17 128.0 9.5 106 461-570 12-143 (298)
251 3eqc_A Dual specificity mitoge 99.4 1.8E-12 6.1E-17 130.8 10.6 103 462-569 33-136 (360)
252 3kfa_A Tyrosine-protein kinase 99.4 9.3E-13 3.2E-17 128.4 8.3 105 461-570 12-117 (288)
253 2ac3_A MAP kinase-interacting 99.4 2.9E-12 1E-16 126.6 12.0 103 462-570 12-117 (316)
254 2j7t_A Serine/threonine-protei 99.4 1.9E-12 6.4E-17 127.1 10.4 105 461-570 18-123 (302)
255 2i0e_A Protein kinase C-beta I 99.4 4.5E-13 1.5E-17 134.4 6.1 107 460-569 18-126 (353)
256 3tt0_A Basic fibroblast growth 99.4 1.6E-12 5.3E-17 132.3 10.1 107 462-570 69-197 (382)
257 3un9_A NLR family member X1; l 99.4 1.1E-13 3.9E-18 139.5 1.6 111 242-352 126-253 (372)
258 2r5t_A Serine/threonine-protei 99.4 6.6E-13 2.3E-17 134.2 7.1 95 461-555 37-133 (373)
259 3o0g_A Cell division protein k 99.4 2.7E-12 9.2E-17 125.4 11.3 105 462-570 2-107 (292)
260 1ob3_A PFPK5, cell division co 99.3 1.5E-12 5E-17 127.1 9.3 104 462-569 2-105 (288)
261 1t46_A HOMO sapiens V-KIT hard 99.3 1.5E-12 5.2E-17 128.4 9.2 108 461-570 22-151 (313)
262 3dtc_A Mitogen-activated prote 99.3 1.5E-12 5.3E-17 125.6 9.0 104 462-570 7-111 (271)
263 1k9a_A Carboxyl-terminal SRC k 99.3 1.7E-12 6E-17 134.9 9.9 103 461-570 192-295 (450)
264 2yex_A Serine/threonine-protei 99.3 2.3E-12 8E-17 124.6 10.2 105 461-570 6-111 (276)
265 4ejn_A RAC-alpha serine/threon 99.3 3.7E-13 1.3E-17 139.9 4.8 107 461-570 147-254 (446)
266 3lij_A Calcium/calmodulin depe 99.3 1.7E-12 5.7E-17 136.8 9.8 104 462-569 37-141 (494)
267 2eva_A TAK1 kinase - TAB1 chim 99.3 1.4E-12 4.8E-17 128.5 8.5 100 462-569 8-107 (307)
268 4e5w_A Tyrosine-protein kinase 99.3 2.4E-12 8.1E-17 126.4 10.1 105 462-570 21-132 (302)
269 1rjb_A FL cytokine receptor; k 99.3 1.5E-12 5.3E-17 130.3 8.9 95 460-556 43-144 (344)
270 3lxp_A Non-receptor tyrosine-p 99.3 4.7E-12 1.6E-16 125.3 12.2 101 464-570 33-140 (318)
271 3hko_A Calcium/calmodulin-depe 99.3 1.3E-12 4.3E-17 131.0 8.2 97 457-553 21-120 (345)
272 2vgo_A Serine/threonine-protei 99.3 7.1E-13 2.4E-17 129.0 6.2 107 461-570 13-120 (284)
273 2jam_A Calcium/calmodulin-depe 99.3 2.2E-12 7.5E-17 126.8 9.7 102 462-569 9-111 (304)
274 2yfx_A Tyrosine-protein kinase 99.3 2.4E-12 8.1E-17 128.0 9.9 108 461-570 29-146 (327)
275 2pmi_A Negative RE, cyclin-dep 99.3 2.4E-12 8.3E-17 127.4 9.8 106 461-569 4-113 (317)
276 3a7i_A MST3 kinase, serine/thr 99.3 5E-12 1.7E-16 124.2 12.0 103 462-570 22-125 (303)
277 2h8h_A Proto-oncogene tyrosine 99.3 1.1E-12 3.6E-17 139.5 7.5 104 461-570 266-369 (535)
278 3i6u_A CDS1, serine/threonine- 99.3 1.6E-12 5.6E-17 133.8 8.6 107 460-570 133-245 (419)
279 1phk_A Phosphorylase kinase; g 99.3 2.8E-12 9.7E-17 125.6 9.7 107 461-570 16-130 (298)
280 1qpc_A LCK kinase; alpha beta 99.3 1.9E-12 6.6E-17 125.5 8.3 103 462-570 13-115 (279)
281 2qr7_A Ribosomal protein S6 ki 99.3 2.9E-12 1E-16 128.1 9.6 99 461-569 21-121 (342)
282 3gbz_A Kinase, CMGC CDK; ssgci 99.3 3E-12 1E-16 127.4 9.6 107 459-570 31-138 (329)
283 3mwu_A Calmodulin-domain prote 99.3 1.3E-12 4.3E-17 137.5 7.2 105 462-570 22-127 (486)
284 3kn6_A Ribosomal protein S6 ki 99.3 4.3E-12 1.5E-16 126.0 10.6 95 467-570 16-112 (325)
285 4aaa_A Cyclin-dependent kinase 99.3 4.1E-12 1.4E-16 126.5 10.3 106 461-570 24-130 (331)
286 1p4o_A Insulin-like growth fac 99.3 1.8E-12 6.1E-17 128.6 7.6 110 459-570 22-144 (322)
287 1mqb_A Ephrin type-A receptor 99.3 4E-12 1.4E-16 126.7 10.1 105 462-570 44-153 (333)
288 3qup_A Tyrosine-protein kinase 99.3 2.5E-12 8.4E-17 127.6 8.5 109 461-570 22-143 (323)
289 3lxl_A Tyrosine-protein kinase 99.3 2.9E-12 1E-16 127.4 9.0 104 462-570 23-133 (327)
290 2pml_X PFPK7, Ser/Thr protein 99.3 8.6E-13 2.9E-17 132.4 5.1 108 461-570 30-157 (348)
291 1u59_A Tyrosine-protein kinase 99.3 6.9E-12 2.4E-16 122.2 11.2 104 462-570 9-116 (287)
292 3p1a_A MYT1 kinase, membrane-a 99.3 6E-12 2.1E-16 124.1 10.9 105 462-570 57-163 (311)
293 2w1i_A JAK2; chromosomal rearr 99.3 4.1E-12 1.4E-16 126.3 9.8 105 461-570 40-151 (326)
294 2vwi_A Serine/threonine-protei 99.3 1.9E-12 6.3E-17 127.2 7.1 108 461-570 14-127 (303)
295 1t4h_A Serine/threonine-protei 99.3 4.9E-12 1.7E-16 123.4 10.0 103 463-569 27-134 (290)
296 1mp8_A Focal adhesion kinase 1 99.3 5.7E-12 1.9E-16 122.4 10.4 105 461-570 14-122 (281)
297 2wei_A Calmodulin-domain prote 99.3 3E-12 1E-16 124.7 8.5 106 461-570 21-127 (287)
298 1zy4_A Serine/threonine-protei 99.3 4.8E-12 1.7E-16 124.1 9.9 103 461-569 5-121 (303)
299 2buj_A Serine/threonine-protei 99.3 2.1E-12 7.1E-17 127.8 7.2 107 461-570 28-140 (317)
300 3gxj_A TGF-beta receptor type- 99.3 4.5E-12 1.6E-16 124.4 9.6 98 462-570 3-106 (303)
301 1fvr_A Tyrosine-protein kinase 99.3 5.7E-12 2E-16 125.2 10.3 107 462-570 25-148 (327)
302 2ycf_A Serine/threonine-protei 99.3 3.4E-12 1.2E-16 126.6 8.6 104 462-569 10-119 (322)
303 3e7e_A HBUB1, BUB1A, mitotic c 99.3 3.3E-12 1.1E-16 129.1 8.6 104 461-570 64-178 (365)
304 3com_A Serine/threonine-protei 99.3 6.3E-12 2.1E-16 124.1 10.3 104 460-570 27-131 (314)
305 2y7j_A Phosphorylase B kinase 99.3 5.6E-12 1.9E-16 127.3 10.1 110 458-570 90-206 (365)
306 2izr_A Casein kinase I isoform 99.3 5.2E-12 1.8E-16 125.7 9.7 101 462-570 9-111 (330)
307 3dls_A PAS domain-containing s 99.3 1.8E-12 6.1E-17 129.3 6.2 107 461-570 23-136 (335)
308 2ozo_A Tyrosine-protein kinase 99.3 6.1E-12 2.1E-16 135.7 10.7 102 464-570 337-442 (613)
309 3lb7_A RAF proto-oncogene seri 99.3 1.1E-11 3.9E-16 121.9 11.6 104 461-570 35-138 (307)
310 2xir_A Vascular endothelial gr 99.3 4.4E-12 1.5E-16 125.3 8.6 101 454-556 19-127 (316)
311 2a19_B Interferon-induced, dou 99.3 4.1E-12 1.4E-16 123.4 8.2 101 462-570 11-128 (284)
312 2r3i_A Cell division protein k 99.3 8E-12 2.7E-16 122.4 10.1 105 462-569 3-108 (299)
313 3og7_A AKAP9-BRAF fusion prote 99.3 9.4E-12 3.2E-16 121.4 10.0 104 461-570 23-126 (289)
314 3dbq_A Dual specificity protei 99.3 9.9E-12 3.4E-16 124.4 10.2 104 462-570 9-114 (343)
315 2x7f_A TRAF2 and NCK-interacti 99.3 1.1E-11 3.7E-16 123.1 10.3 107 458-569 20-134 (326)
316 2zmd_A Dual specificity protei 99.3 1.2E-11 4E-16 126.1 10.4 104 462-570 56-161 (390)
317 1xbb_A Tyrosine-protein kinase 99.3 1E-11 3.5E-16 121.2 9.6 105 461-570 15-123 (291)
318 3lm5_A Serine/threonine-protei 99.3 6.4E-12 2.2E-16 124.9 8.2 109 460-570 26-137 (327)
319 3q4u_A Activin receptor type-1 99.3 1.2E-11 4.1E-16 121.3 9.8 99 461-570 7-111 (301)
320 3brb_A Proto-oncogene tyrosine 99.3 1E-11 3.5E-16 122.5 9.3 110 460-570 32-153 (313)
321 2wtk_C Serine/threonine-protei 99.3 8.7E-12 3E-16 122.5 8.6 108 461-570 4-115 (305)
322 3pg1_A Mitogen-activated prote 99.3 6.7E-12 2.3E-16 126.7 7.9 114 454-570 14-140 (362)
323 3f66_A Hepatocyte growth facto 99.2 1.2E-11 4E-16 121.2 9.4 105 462-570 25-134 (298)
324 3poz_A Epidermal growth factor 99.2 1.1E-11 3.7E-16 123.3 9.2 104 462-570 15-123 (327)
325 1ua2_A CAK, cell division prot 99.2 7.3E-12 2.5E-16 125.5 8.0 107 460-569 8-117 (346)
326 4fs7_A Uncharacterized protein 99.2 3.5E-10 1.2E-14 115.4 20.6 287 42-343 88-393 (394)
327 3pls_A Macrophage-stimulating 99.2 1.4E-11 4.7E-16 120.6 9.8 104 463-570 22-130 (298)
328 1nxk_A MAP kinase-activated pr 99.2 1.4E-11 4.6E-16 126.0 9.7 100 462-570 61-167 (400)
329 2ifg_A High affinity nerve gro 99.2 2.2E-11 7.5E-16 122.1 11.1 94 88-183 23-117 (347)
330 3n9x_A Phosphotransferase; mal 99.2 1.5E-11 5.2E-16 127.1 9.9 105 461-570 25-135 (432)
331 3c1x_A Hepatocyte growth facto 99.2 8.9E-12 3.1E-16 126.0 7.9 104 463-570 90-198 (373)
332 3m2w_A MAP kinase-activated pr 99.2 2E-11 6.9E-16 119.6 10.2 100 462-570 17-123 (299)
333 3llt_A Serine/threonine kinase 99.2 2.7E-11 9.4E-16 122.0 11.4 106 459-570 32-143 (360)
334 3qa8_A MGC80376 protein; kinas 99.2 2.8E-12 9.6E-17 137.2 4.1 107 462-570 14-127 (676)
335 1u46_A ACK-1, activated CDC42 99.2 8.1E-12 2.8E-16 121.8 7.0 106 462-570 18-127 (291)
336 3mtl_A Cell division protein k 99.2 4.3E-12 1.5E-16 125.9 5.1 103 462-569 2-105 (324)
337 2pzi_A Probable serine/threoni 99.2 1E-11 3.6E-16 135.9 8.5 102 462-570 80-188 (681)
338 3rp9_A Mitogen-activated prote 99.2 1.3E-11 4.6E-16 128.7 8.9 103 462-569 53-161 (458)
339 3cc6_A Protein tyrosine kinase 99.2 2.4E-11 8.2E-16 117.9 10.1 105 461-570 11-119 (281)
340 1vzo_A Ribosomal protein S6 ki 99.2 4.1E-12 1.4E-16 127.8 4.4 105 462-569 54-164 (355)
341 3nsz_A CK II alpha, casein kin 99.2 3.8E-11 1.3E-15 119.3 11.5 87 462-554 36-126 (330)
342 3mi9_A Cell division protein k 99.2 2.5E-11 8.5E-16 121.9 10.2 106 461-570 16-130 (351)
343 3byv_A Rhoptry kinase; malaria 99.2 1.8E-12 6E-17 131.7 1.7 109 461-570 72-212 (377)
344 2ifg_A High affinity nerve gro 99.2 3.2E-11 1.1E-15 120.9 10.7 104 222-328 12-117 (347)
345 3pfq_A PKC-B, PKC-beta, protei 99.2 6.1E-12 2.1E-16 137.0 5.8 108 460-570 339-448 (674)
346 1byg_A CSK, protein (C-termina 99.2 7.9E-12 2.7E-16 121.1 6.0 103 461-570 20-123 (278)
347 3fme_A Dual specificity mitoge 99.2 2E-11 7E-16 118.9 8.8 108 461-570 6-115 (290)
348 4fl3_A Tyrosine-protein kinase 99.2 2E-11 7E-16 132.0 9.5 98 468-570 375-475 (635)
349 1cm8_A Phosphorylated MAP kina 99.2 1.5E-11 5.2E-16 124.2 7.7 103 461-569 24-133 (367)
350 1csn_A Casein kinase-1; phosph 99.2 5.1E-11 1.7E-15 116.6 10.9 101 462-570 10-112 (298)
351 3kex_A Receptor tyrosine-prote 99.2 9.6E-12 3.3E-16 123.5 5.7 104 462-570 13-121 (325)
352 3eb0_A Putative uncharacterize 99.2 2.5E-11 8.7E-16 123.4 8.8 104 459-570 4-147 (383)
353 1b6c_B TGF-B superfamily recep 99.2 2.7E-11 9.3E-16 121.1 8.9 99 461-570 41-145 (342)
354 3oz6_A Mitogen-activated prote 99.2 3.6E-11 1.2E-15 122.5 9.9 104 460-569 7-114 (388)
355 3an0_A Dual specificity mitoge 99.2 4E-11 1.4E-15 119.8 9.8 107 461-570 50-159 (340)
356 3g33_A Cell division protein k 99.2 3.9E-11 1.3E-15 118.1 9.6 108 461-570 8-126 (308)
357 2i6l_A Mitogen-activated prote 99.2 2.7E-11 9.2E-16 119.8 8.4 100 462-569 11-125 (320)
358 2j0j_A Focal adhesion kinase 1 99.2 4.9E-11 1.7E-15 129.5 11.1 105 461-570 389-497 (656)
359 2vuw_A Serine/threonine-protei 99.2 1.9E-11 6.6E-16 121.9 7.4 103 462-569 20-166 (336)
360 2xrw_A Mitogen-activated prote 99.2 5.1E-11 1.7E-15 120.6 10.5 102 461-569 24-132 (371)
361 3ll6_A Cyclin G-associated kin 99.2 1.3E-11 4.6E-16 122.9 6.0 105 462-570 28-142 (337)
362 3mdy_A Bone morphogenetic prot 99.2 3.5E-11 1.2E-15 120.0 9.0 99 461-570 36-140 (337)
363 3ttj_A Mitogen-activated prote 99.2 2.6E-11 8.9E-16 126.3 8.2 102 461-569 61-169 (464)
364 3cek_A Dual specificity protei 99.2 5.4E-11 1.9E-15 117.3 9.5 105 461-570 27-133 (313)
365 3lzb_A Epidermal growth factor 99.2 5E-11 1.7E-15 118.4 9.2 104 462-570 15-123 (327)
366 4gt6_A Cell surface protein; l 99.2 4.2E-09 1.4E-13 107.3 23.7 286 49-350 65-369 (394)
367 2iwi_A Serine/threonine-protei 99.2 1.7E-11 5.7E-16 121.0 5.4 109 459-570 28-145 (312)
368 2fst_X Mitogen-activated prote 99.2 3.1E-11 1.1E-15 121.8 7.4 104 461-570 28-138 (367)
369 4exu_A Mitogen-activated prote 99.2 5.4E-11 1.8E-15 120.4 8.8 103 461-570 41-150 (371)
370 2b9h_A MAP kinase FUS3, mitoge 99.1 7E-11 2.4E-15 118.6 9.5 103 461-570 10-118 (353)
371 2y4i_B KSR2, HKSR2, kinase sup 99.1 9.2E-12 3.2E-16 123.2 2.8 105 461-570 32-136 (319)
372 2v62_A Serine/threonine-protei 99.1 3E-11 1E-15 121.0 6.4 105 462-570 37-157 (345)
373 3e3p_A Protein kinase, putativ 99.1 7.5E-11 2.6E-15 118.8 9.3 109 455-568 16-133 (360)
374 4gt6_A Cell surface protein; l 99.1 4.6E-09 1.6E-13 107.0 22.6 271 91-372 81-368 (394)
375 3qyz_A Mitogen-activated prote 99.1 7.7E-11 2.6E-15 118.9 9.2 103 461-570 26-134 (364)
376 3aln_A Dual specificity mitoge 99.1 1.5E-10 5E-15 115.0 11.1 107 461-570 21-131 (327)
377 3coi_A Mitogen-activated prote 99.1 7.1E-11 2.4E-15 118.7 8.7 102 462-570 24-132 (353)
378 3op5_A Serine/threonine-protei 99.1 5E-11 1.7E-15 120.3 7.5 107 461-570 34-158 (364)
379 3fhr_A MAP kinase-activated pr 99.1 1.4E-10 4.7E-15 115.7 10.1 101 461-570 27-134 (336)
380 2jii_A Serine/threonine-protei 99.1 2.8E-11 9.7E-16 121.5 4.4 99 462-570 42-165 (352)
381 1blx_A Cyclin-dependent kinase 99.1 6.1E-11 2.1E-15 117.6 6.7 109 459-570 8-126 (326)
382 3kvw_A DYRK2, dual specificity 99.1 2.8E-10 9.5E-15 117.4 11.4 103 462-570 97-206 (429)
383 3g2f_A Bone morphogenetic prot 99.1 1.9E-10 6.5E-15 114.6 9.6 99 461-570 12-117 (336)
384 1wak_A Serine/threonine-protei 99.1 1.7E-10 5.9E-15 117.7 8.7 103 462-570 37-152 (397)
385 3uzp_A CKI-delta, CKID, casein 99.1 3.3E-10 1.1E-14 110.6 10.3 102 461-570 8-111 (296)
386 3rgf_A Cyclin-dependent kinase 99.1 1.4E-10 4.6E-15 118.9 7.7 101 464-570 22-134 (405)
387 2dyl_A Dual specificity mitoge 99.1 2.6E-10 8.8E-15 112.6 9.1 106 461-570 24-130 (318)
388 4hgt_A Casein kinase I isoform 99.1 3.7E-10 1.2E-14 110.2 9.7 103 460-570 7-111 (296)
389 1z57_A Dual specificity protei 99.1 3.1E-10 1E-14 113.0 9.2 103 462-570 14-124 (339)
390 3q60_A ROP5B; pseudokinase, tr 99.1 1.4E-10 4.7E-15 117.4 6.7 94 461-555 61-181 (371)
391 4e7w_A Glycogen synthase kinas 99.0 1.8E-10 6.3E-15 117.4 7.1 101 462-569 40-146 (394)
392 1j1b_A Glycogen synthase kinas 99.0 2.3E-10 7.9E-15 117.7 7.6 100 462-569 54-161 (420)
393 3p23_A Serine/threonine-protei 99.0 2.2E-10 7.6E-15 118.1 7.3 88 462-556 24-112 (432)
394 3a99_A Proto-oncogene serine/t 99.0 8.2E-11 2.8E-15 116.5 3.9 108 460-570 41-155 (320)
395 2rio_A Serine/threonine-protei 99.0 3.3E-10 1.1E-14 117.1 8.3 86 464-556 17-103 (434)
396 3sv0_A Casein kinase I-like; t 99.0 9.1E-10 3.1E-14 114.8 11.5 102 461-570 6-109 (483)
397 2ra8_A Uncharacterized protein 99.0 4.2E-10 1.4E-14 112.5 8.3 83 241-325 251-341 (362)
398 1q8y_A SR protein kinase; tran 99.0 4E-10 1.4E-14 114.0 7.4 103 462-570 19-137 (373)
399 2ra8_A Uncharacterized protein 99.0 7E-10 2.4E-14 110.9 8.7 149 196-349 174-341 (362)
400 2vx3_A Dual specificity tyrosi 99.0 1E-09 3.4E-14 111.5 10.0 104 461-570 53-163 (382)
401 2eu9_A Dual specificity protei 99.0 1.3E-09 4.4E-14 109.3 9.3 103 462-570 19-129 (355)
402 3en9_A Glycoprotease, O-sialog 98.9 1.6E-09 5.3E-14 114.8 7.8 89 465-554 339-432 (540)
403 1zar_A RIO2 kinase; serine kin 98.9 3.1E-09 1.1E-13 102.7 7.5 95 454-553 82-191 (282)
404 4h09_A Hypothetical leucine ri 98.8 5.8E-07 2E-11 90.8 23.0 280 46-346 44-341 (379)
405 4azs_A Methyltransferase WBDD; 98.8 6.7E-09 2.3E-13 110.6 7.5 88 469-556 241-337 (569)
406 4h09_A Hypothetical leucine ri 98.8 1.3E-06 4.4E-11 88.3 23.6 277 42-338 63-356 (379)
407 1io0_A Tropomodulin; LRR prote 98.6 4.1E-08 1.4E-12 88.4 5.3 115 237-351 31-164 (185)
408 1io0_A Tropomodulin; LRR prote 98.5 4.5E-08 1.5E-12 88.2 3.0 92 92-183 31-137 (185)
409 3rw6_A Nuclear RNA export fact 98.5 4.6E-08 1.6E-12 92.7 3.0 80 263-344 167-257 (267)
410 3rw6_A Nuclear RNA export fact 98.4 6.5E-08 2.2E-12 91.6 1.6 65 119-185 168-236 (267)
411 3dzo_A Rhoptry kinase domain; 98.3 2.7E-07 9.1E-12 94.5 5.2 108 462-570 78-217 (413)
412 1zth_A RIO1 serine protein kin 98.3 2.7E-07 9.4E-12 87.8 4.7 87 463-553 48-165 (258)
413 3e4g_A ATP synthase subunit S, 98.3 3.9E-07 1.3E-11 80.0 3.5 93 88-180 52-150 (176)
414 4gyi_A RIO2 kinase; protein ki 98.1 4E-06 1.4E-10 83.5 7.5 97 455-553 88-203 (397)
415 3e4g_A ATP synthase subunit S, 98.0 3.6E-06 1.2E-10 73.9 4.7 84 242-325 61-150 (176)
416 3tm0_A Aminoglycoside 3'-phosp 97.6 0.00015 5.1E-09 68.8 7.9 91 458-552 10-101 (263)
417 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00027 9.1E-09 63.2 6.7 111 240-350 39-169 (197)
418 3d1u_A Putative fructosamine-3 97.2 0.00075 2.6E-08 64.9 8.0 77 465-548 18-97 (288)
419 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00033 1.1E-08 62.6 4.4 89 238-326 66-169 (197)
420 1nd4_A Aminoglycoside 3'-phosp 97.1 0.00068 2.3E-08 63.9 6.7 81 463-549 21-103 (264)
421 3rfe_A Platelet glycoprotein I 96.6 0.0042 1.4E-07 51.6 6.7 57 294-352 12-69 (130)
422 3rfe_A Platelet glycoprotein I 96.5 0.0043 1.5E-07 51.6 6.0 35 147-181 33-67 (130)
423 3dxp_A Putative acyl-COA dehyd 95.6 0.015 5.1E-07 57.7 6.4 81 466-549 42-129 (359)
424 3f7w_A Putative fructosamine-3 93.9 0.097 3.3E-06 49.9 6.9 78 464-548 17-97 (288)
425 3jr1_A Putative fructosamine-3 93.7 0.19 6.5E-06 48.4 8.6 75 467-548 41-118 (312)
426 2olc_A MTR kinase, methylthior 93.3 0.07 2.4E-06 53.6 5.0 79 467-547 35-121 (397)
427 4gkh_A Aminoglycoside 3'-phosp 93.3 0.36 1.2E-05 45.2 9.7 78 469-552 31-111 (272)
428 3r70_A Aminoglycoside phosphot 92.6 0.26 8.9E-06 47.7 7.8 75 463-550 38-116 (320)
429 3ovc_A Hygromycin-B 4-O-kinase 91.2 0.69 2.4E-05 45.6 9.1 77 464-549 43-122 (362)
430 3tdw_A Gentamicin resistance p 87.8 1.4 4.7E-05 42.2 8.1 75 467-550 24-102 (306)
431 3cxl_A N-chimerin; SH2, RHO-GA 87.4 0.066 2.3E-06 54.9 -1.7 63 466-532 146-215 (463)
432 3sg8_A APH(2'')-ID; antibiotic 83.7 0.88 3E-05 43.4 4.4 75 467-550 25-105 (304)
433 3ats_A Putative uncharacterize 83.1 0.35 1.2E-05 47.5 1.3 83 468-550 26-122 (357)
434 1zyl_A Hypothetical protein YI 75.8 8.2 0.00028 36.9 8.5 76 468-548 32-114 (328)
435 2q83_A YTAA protein; 2635576, 74.7 4.8 0.00016 38.7 6.6 73 468-548 38-118 (346)
436 2ks1_B Epidermal growth factor 71.9 3.2 0.00011 26.4 2.8 25 402-426 14-39 (44)
437 2pyw_A Uncharacterized protein 70.9 8.7 0.0003 38.4 7.5 76 467-545 39-122 (420)
438 2l2t_A Receptor tyrosine-prote 66.8 4.9 0.00017 25.5 2.9 9 418-426 30-38 (44)
439 2ppq_A HSK, HK, homoserine kin 66.0 11 0.00039 35.7 7.0 91 452-548 7-110 (322)
440 2jwa_A Receptor tyrosine-prote 54.3 4.8 0.00017 25.5 1.2 9 418-426 31-39 (44)
441 1nw1_A Choline kinase (49.2 KD 50.6 16 0.00055 36.6 5.1 72 468-548 79-159 (429)
442 3feg_A Choline/ethanolamine ki 48.1 19 0.00064 35.4 5.0 74 468-549 56-138 (379)
443 3csv_A Aminoglycoside phosphot 46.4 37 0.0013 32.3 6.9 78 468-553 24-104 (333)
444 2lz0_A Uncharacterized protein 46.0 47 0.0016 25.3 6.1 40 113-153 12-51 (100)
445 3i1a_A Spectinomycin phosphotr 38.5 49 0.0017 31.6 6.4 64 475-548 36-108 (339)
446 2lz0_A Uncharacterized protein 37.5 35 0.0012 26.0 4.1 45 302-347 8-52 (100)
447 3dxq_A Choline/ethanolamine ki 36.9 31 0.001 32.3 4.5 72 466-548 22-95 (301)
448 2qg7_A Ethanolamine kinase PV0 29.4 64 0.0022 32.5 5.6 73 468-548 114-188 (458)
449 3c5i_A Choline kinase; choline 25.8 41 0.0014 32.5 3.4 73 468-548 39-121 (369)
450 3mes_A Choline kinase; malaria 20.6 1.2E+02 0.004 30.2 5.5 73 468-548 76-157 (424)
451 1iij_A ERBB-2 receptor protein 20.4 20 0.00067 21.5 -0.2 8 418-425 27-34 (35)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-43 Score=395.79 Aligned_cols=346 Identities=34% Similarity=0.474 Sum_probs=291.4
Q ss_pred CCchhhcCCCCCCEEEccCCccc-------cCCCCccceeecccccccCCCCCCCc------------------cccccc
Q 044615 39 DDYKELVRAVQARDTSISFDELH-------EKLLTFEATAHFSVLAFTGQDWPLYS------------------SIPDEI 93 (571)
Q Consensus 39 ~~~~~l~~~~~l~~l~l~~n~l~-------~~~l~~l~~l~l~~n~l~~~~~~~~~------------------~~p~~~ 93 (571)
..|..+..+++|+.|+++.|.+. +..+++|+.|+++.|.+++.-...+. .+|..+
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence 35666777777777777777664 55666666677666666541000000 234444
Q ss_pred cC--CCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCC
Q 044615 94 GN--MKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSL 171 (571)
Q Consensus 94 ~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 171 (571)
.. +++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+..+++|
T Consensus 389 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 43 6678888888888877888888888889999999998888888888889999999999999888888888899999
Q ss_pred CEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEccc
Q 044615 172 SILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSA 251 (571)
Q Consensus 172 ~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 251 (571)
++|++++|++.+.+|..+..+++ |+.|++++|++++.+|..++.+++|+.|++++|++++.+|..++.+++|+.|++++
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTN-LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred eEEEecCCcccCcCCHHHhcCCC-CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 99999999998888888888886 99999999999988898899999999999999999988999999999999999999
Q ss_pred Cccccccchhh---------------------------------------------------------------------
Q 044615 252 NTFHKSIPESL--------------------------------------------------------------------- 262 (571)
Q Consensus 252 n~l~~~~~~~l--------------------------------------------------------------------- 262 (571)
|.+.+.+|..+
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 98877666543
Q ss_pred -ccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCC
Q 044615 263 -SNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLS 341 (571)
Q Consensus 263 -~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 341 (571)
..+++|+.|++++|+++|.+|..++.++.|+.|+|++|.+++.+|..++.+++|+.|+|++|+++|.+|..+..++.|+
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 3356789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECcCCcCcccCCCCCccCCCCcccccCCcCCCCCCCCCCCCCCc
Q 044615 342 CIDISYNALQGLIPNSTAFRDAPMLALQGNKRLCGDIKRLPPCKAF 387 (571)
Q Consensus 342 ~L~ls~N~l~~~~~~~~~~~~~~~l~l~~n~~~c~~~~~~~~~~~~ 387 (571)
.||+++|+++|.+|....+..+...++.||+.+||.+ +++|...
T Consensus 708 ~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~--l~~C~~~ 751 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP--LPRCDPS 751 (768)
T ss_dssp EEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT--SCCCCSC
T ss_pred EEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC--CcCCCCC
Confidence 9999999999999998889999999999999999975 3578643
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.7e-41 Score=373.17 Aligned_cols=327 Identities=32% Similarity=0.440 Sum_probs=272.9
Q ss_pred CCchhhcCC-CCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCcccccc-ccCCCCCCEEecccCcCc
Q 044615 39 DDYKELVRA-VQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDE-IGNMKSLSDLQLSENILN 110 (571)
Q Consensus 39 ~~~~~l~~~-~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~-~~~l~~L~~L~L~~n~i~ 110 (571)
..|..+... .+|+.|++++|.+. ++.+++|+.|+++.|.+++ .+|.. +.++++|++|+|++|.++
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-------~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG-------ELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE-------ECCHHHHTTCTTCCEEECCSSEEE
T ss_pred ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC-------cCCHHHHhcCCCCCEEeCcCCccC
Confidence 567777775 99999999999887 7789999999999999987 56654 666777777777777666
Q ss_pred ccccccccC---------------------------CCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCc
Q 044615 111 GSIPLALGN---------------------------LTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPK 163 (571)
Q Consensus 111 ~~~~~~~~~---------------------------l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (571)
+.+|..+.. +++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|.
T Consensus 357 ~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 436 (768)
T 3rgz_A 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436 (768)
T ss_dssp ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH
Confidence 555554433 45677777777777777788888888888888888888888888
Q ss_pred cccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCC
Q 044615 164 EIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQ 243 (571)
Q Consensus 164 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 243 (571)
.+..+++|++|++++|++.+.+|..+..++. |+.|++++|.+++.+|..+..+++|+.|++++|++++.+|.+++.+++
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCC-ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence 8888888888888888888888888888876 999999999988888888888899999999999999888888999999
Q ss_pred CCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhh------------------------------------
Q 044615 244 LEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIE------------------------------------ 287 (571)
Q Consensus 244 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~------------------------------------ 287 (571)
|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+.
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 99999999999888888899999999999999988877665432
Q ss_pred ----------------------------------cccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccc
Q 044615 288 ----------------------------------KLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRC 333 (571)
Q Consensus 288 ----------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 333 (571)
.++.|+.|+|++|++++.+|..++.+++|+.|+|++|+++|.+|..
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence 2467888999999999999999999999999999999999999999
Q ss_pred cccCCCCCEEECcCCcCcccCCC-CCccCCCCcccccCCcC
Q 044615 334 FEEMHWLSCIDISYNALQGLIPN-STAFRDAPMLALQGNKR 373 (571)
Q Consensus 334 ~~~l~~L~~L~ls~N~l~~~~~~-~~~~~~~~~l~l~~n~~ 373 (571)
|..++.|+.|||++|+++|.+|. ...+..+..+++++|+.
T Consensus 676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 99999999999999999988886 35567788888888864
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.6e-38 Score=331.82 Aligned_cols=331 Identities=22% Similarity=0.225 Sum_probs=276.5
Q ss_pred CCCCCchhhcCCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccc-cccccCCCCCCEEecccCc
Q 044615 36 GLGDDYKELVRAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSI-PDEIGNMKSLSDLQLSENI 108 (571)
Q Consensus 36 ~~~~~~~~l~~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~-p~~~~~l~~L~~L~L~~n~ 108 (571)
++..+|. -..++++|+|++|.+. +..+++|++|++++|.+.+ .+ |..|.++++|++|+|++|.
T Consensus 21 ~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~-------~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 21 GLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL-------VIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp CCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC-------EECTTTTTTCTTCCEEECTTCT
T ss_pred CcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc-------eECcccccccccCCEEeCCCCc
Confidence 4455555 2278999999999887 7788999999999998875 44 5678899999999999999
Q ss_pred CcccccccccCCCCCCEEEcccCcCccccccc--ccCCCCCCeeecccCcCcccCCcc-ccCCCCCCEEEccCCCCCccC
Q 044615 109 LNGSIPLALGNLTNLVVLDLSTNKLSGSIPLS--FANLTSLSILYLYENSLCDSIPKE-IGNMNSLSILDLSSNKLNGSI 185 (571)
Q Consensus 109 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~ 185 (571)
+++..|..|+++++|++|+|++|.+++..+.. |..+++|++|+|++|.+.+..|.. +..+++|++|++++|++.+..
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 99888999999999999999999998755554 899999999999999998877766 889999999999999999877
Q ss_pred Chhhhhcc-CCCcEEEccCCcccccCCcc--------ccCCCCCcEEeCccCcCcCCCChhhhC----------------
Q 044615 186 PLSLANLT-NSLKVLYLSSNHIVGEIPLG--------HGMLSSLIQLTLNNNELSGQLSPELGS---------------- 240 (571)
Q Consensus 186 p~~~~~l~-~~L~~L~l~~n~~~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------- 240 (571)
|..+..+. .+|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+..|..+..
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 77776652 23777888887776544332 224567777777777776544443321
Q ss_pred -----------------------CCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEc
Q 044615 241 -----------------------LIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDL 297 (571)
Q Consensus 241 -----------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 297 (571)
.++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 330 (455)
T 3v47_A 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330 (455)
T ss_dssp TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEEC
Confidence 268999999999999888999999999999999999999888889999999999999
Q ss_pred cCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCCC-CccCCCCcccccCCcCCCC
Q 044615 298 SHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNS-TAFRDAPMLALQGNKRLCG 376 (571)
Q Consensus 298 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~~~~~~l~l~~n~~~c~ 376 (571)
++|.+.+..+..+..+++|+.|+|++|++++..|..|..+++|+.|++++|++++.++.. ..++.+..+++.+|+..|.
T Consensus 331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 999999888889999999999999999999988999999999999999999999877753 5678889999999998774
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=329.14 Aligned_cols=332 Identities=21% Similarity=0.191 Sum_probs=290.0
Q ss_pred CCCCCchhhcCCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcC
Q 044615 36 GLGDDYKELVRAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENIL 109 (571)
Q Consensus 36 ~~~~~~~~l~~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i 109 (571)
++..+|..+. .+++.|+|++|.+. +..+++|+.|+|++|.+++ ..|..|.++++|++|+|++|.+
T Consensus 22 ~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-------~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 22 RFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA-------VEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-------ECTTTTTTCTTCCEEECCSSCC
T ss_pred CcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE-------eChhhhhCCccCCEEECCCCcC
Confidence 4455666553 58899999999887 7789999999999999987 6688899999999999999999
Q ss_pred cccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhh
Q 044615 110 NGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSL 189 (571)
Q Consensus 110 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~ 189 (571)
+...+..|.++++|++|+|++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 97777788999999999999999998889999999999999999999998888899999999999999999986555567
Q ss_pred hhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCC
Q 044615 190 ANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLH 269 (571)
Q Consensus 190 ~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 269 (571)
..+++ |+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|+.|++++|.++...+..+..+++|+
T Consensus 173 ~~l~~-L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 173 SHLHG-LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp TTCTT-CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred cccCC-CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 77775 99999999999988888999999999999999988877777777777999999999999876667899999999
Q ss_pred EEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCc
Q 044615 270 YLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNA 349 (571)
Q Consensus 270 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~ 349 (571)
.|++++|.+++..+..+..+++|+.|+|++|++.+..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 99999999998888889999999999999999999889999999999999999999998888889999999999999999
Q ss_pred CcccCCCCCccCCCCcccccCCcCCCCC
Q 044615 350 LQGLIPNSTAFRDAPMLALQGNKRLCGD 377 (571)
Q Consensus 350 l~~~~~~~~~~~~~~~l~l~~n~~~c~~ 377 (571)
+++..+....+.......+.++...|..
T Consensus 332 l~c~c~~~~~~~~~~~~~~~~~~~~C~~ 359 (477)
T 2id5_A 332 LACDCRLLWVFRRRWRLNFNRQQPTCAT 359 (477)
T ss_dssp EECSGGGHHHHTTTTSSCCTTCCCBEEE
T ss_pred ccCccchHhHHhhhhccccCccCceeCC
Confidence 9876543222233334455666666643
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.2e-37 Score=333.85 Aligned_cols=114 Identities=19% Similarity=0.175 Sum_probs=81.4
Q ss_pred hhhcCCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccc
Q 044615 42 KELVRAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPL 115 (571)
Q Consensus 42 ~~l~~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~ 115 (571)
..+.++++|++|++++|.+. +..+++|++|+|++|.+++ ..|..|+++++|++|+|++|.+++..+.
T Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~-------~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 122 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-------FSPGSFSGLTSLENLVAVETKLASLESF 122 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC-------CCTTSSTTCTTCCEEECTTSCCCCSSSS
T ss_pred hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc-------cChhhcCCcccCCEEEccCCcccccccc
Confidence 35667777777777777665 5567777777777777766 4567777777777777777777766666
Q ss_pred cccCCCCCCEEEcccCcCcc-cccccccCCCCCCeeecccCcCcccCC
Q 044615 116 ALGNLTNLVVLDLSTNKLSG-SIPLSFANLTSLSILYLYENSLCDSIP 162 (571)
Q Consensus 116 ~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (571)
.|+++++|++|++++|.+.+ .+|..|+++++|++|++++|.+.+..|
T Consensus 123 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 77777777777777777765 457777777777777777777665443
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.9e-37 Score=322.90 Aligned_cols=311 Identities=22% Similarity=0.220 Sum_probs=260.2
Q ss_pred chhhcCCCCCCEEEccCCccc-------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccc
Q 044615 41 YKELVRAVQARDTSISFDELH-------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSI 113 (571)
Q Consensus 41 ~~~l~~~~~l~~l~l~~n~l~-------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~ 113 (571)
|..+.++++|++|++++|.+. +..+++|++|+|++|.+++ ..|..|+++++|++|+|++|.+++..
T Consensus 47 ~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~ 119 (455)
T 3v47_A 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-------LETGAFNGLANLEVLTLTQCNLDGAV 119 (455)
T ss_dssp TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE-------ECTTTTTTCTTCCEEECTTSCCBTHH
T ss_pred hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc-------cChhhccCcccCCEEeCCCCCCCccc
Confidence 678999999999999999764 7789999999999999987 66889999999999999999998766
Q ss_pred ccc--ccCCCCCCEEEcccCcCccccccc-ccCCCCCCeeecccCcCcccCCccccCC--CCCCEEEccCCCC-------
Q 044615 114 PLA--LGNLTNLVVLDLSTNKLSGSIPLS-FANLTSLSILYLYENSLCDSIPKEIGNM--NSLSILDLSSNKL------- 181 (571)
Q Consensus 114 ~~~--~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l------- 181 (571)
+.. |+.+++|++|+|++|.+++..|.. +.++++|++|++++|.+.+..|..+..+ .+|+.|++++|.+
T Consensus 120 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~ 199 (455)
T 3v47_A 120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199 (455)
T ss_dssp HHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTC
T ss_pred cCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhh
Confidence 555 999999999999999999887776 8999999999999999998888777655 3445555555544
Q ss_pred -------------------------CccCChhhhhcc--CCCcEEEccCCcccccC----------Ccccc--CCCCCcE
Q 044615 182 -------------------------NGSIPLSLANLT--NSLKVLYLSSNHIVGEI----------PLGHG--MLSSLIQ 222 (571)
Q Consensus 182 -------------------------~~~~p~~~~~l~--~~L~~L~l~~n~~~~~~----------~~~~~--~l~~L~~ 222 (571)
.+..|..+.... .+|+.|++++|...+.. +..+. ..++|+.
T Consensus 200 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 279 (455)
T 3v47_A 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279 (455)
T ss_dssp TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCE
T ss_pred ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceE
Confidence 444443333320 12444444444332210 01111 1368999
Q ss_pred EeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcC
Q 044615 223 LTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIF 302 (571)
Q Consensus 223 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 302 (571)
|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+.++++|+.|++++|.+++..+..+..+++|+.|+|++|.+
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc
Confidence 99999999999999999999999999999999998899999999999999999999988889999999999999999999
Q ss_pred CcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCCCC
Q 044615 303 REEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNST 358 (571)
Q Consensus 303 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~ 358 (571)
++..|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++++.+|...
T Consensus 360 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred cccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 99889999999999999999999998888889999999999999999999988643
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.4e-37 Score=335.73 Aligned_cols=320 Identities=19% Similarity=0.238 Sum_probs=199.9
Q ss_pred CchhhcCCCCCCEEEccCCcccc-----------------------C--CCCccceeecccccccCCCCCCCcccccccc
Q 044615 40 DYKELVRAVQARDTSISFDELHE-----------------------K--LLTFEATAHFSVLAFTGQDWPLYSSIPDEIG 94 (571)
Q Consensus 40 ~~~~l~~~~~l~~l~l~~n~l~~-----------------------~--~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~ 94 (571)
+|++++++++|++|+|++|.++- + .+++|++|+|++|.+.+ .+|..++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~-------~~p~~l~ 270 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-------KLPTFLK 270 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS-------SCCTTTT
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc-------cChHHHh
Confidence 68889999999999999987653 2 78899999999999888 7888888
Q ss_pred CCCCCCEEecccCc-Ccc-cccccccCC------CCCCEEEcccCcCcccccc--cccCCCCCCeeecccCcCcccCCcc
Q 044615 95 NMKSLSDLQLSENI-LNG-SIPLALGNL------TNLVVLDLSTNKLSGSIPL--SFANLTSLSILYLYENSLCDSIPKE 164 (571)
Q Consensus 95 ~l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (571)
++++|++|+|++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .++++++|++|++++|.+.+.+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 88899999998888 887 777777665 78888888888887 6676 78888888888888888776666 6
Q ss_pred ccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCC--CCcEEeCccCcCcCCCChhhh---
Q 044615 165 IGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLS--SLIQLTLNNNELSGQLSPELG--- 239 (571)
Q Consensus 165 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~--- 239 (571)
+..+++|++|++++|+++ .+|..+..++++|+.|++++|.++ .+|..+..++ +|+.|++++|.+.+..|..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 666667777777777666 566666665533666666666665 4555444433 556666666665555555554
Q ss_pred ----CCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcc-------cCCCEEEccCCcCCcccch
Q 044615 240 ----SLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKL-------IHLSELDLSHNIFREEIPS 308 (571)
Q Consensus 240 ----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-------~~L~~L~Ls~n~l~~~~~~ 308 (571)
.+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+... ++|+.|+|++|.++ .+|.
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccCh
Confidence 44555555555555553333333445555555555555552222222211 14555555555554 2444
Q ss_pred hcc--CCCCCCEEEccCCcCccccccccccCCCCCEEEC------cCCcCcccCCC-CCccCCCCcccccCCc
Q 044615 309 QIC--SMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDI------SYNALQGLIPN-STAFRDAPMLALQGNK 372 (571)
Q Consensus 309 ~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l------s~N~l~~~~~~-~~~~~~~~~l~l~~n~ 372 (571)
.+. .+++|+.|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|. ...++.+..+++.+|.
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 443 55555555555555554 4445555555555555 23444444442 2334444455555554
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-37 Score=337.21 Aligned_cols=305 Identities=21% Similarity=0.303 Sum_probs=239.0
Q ss_pred cCCCCccceeecccccccCCCCCCCc----------ccccccc--CCCCCCEEecccCcCcccccccccCCCCCCEEEcc
Q 044615 62 EKLLTFEATAHFSVLAFTGQDWPLYS----------SIPDEIG--NMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLS 129 (571)
Q Consensus 62 ~~~l~~l~~l~l~~n~l~~~~~~~~~----------~~p~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 129 (571)
++++++|++|+|++|.+++.+....+ .+|+.++ ++++|++|+|++|.+.+.+|..|+++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 55677888888888888871000000 0788888 88888888888888888888888888888888888
Q ss_pred cCc-Ccc-cccccccCC------CCCCeeecccCcCcccCCc--cccCCCCCCEEEccCCCCCccCChhhhhccCCCcEE
Q 044615 130 TNK-LSG-SIPLSFANL------TSLSILYLYENSLCDSIPK--EIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVL 199 (571)
Q Consensus 130 ~n~-i~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L 199 (571)
+|+ +++ .+|..++++ ++|++|++++|.++ .+|. .++.+++|++|++++|++.|.+| .+..+++ |+.|
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~-L~~L 358 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK-LASL 358 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE-ESEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC-CCEE
Confidence 887 887 778777776 88888888888887 6777 78888888888888888887888 7777775 8888
Q ss_pred EccCCcccccCCccccCCCC-CcEEeCccCcCcCCCChhhhCCC--CCCEEEcccCccccccchhhc-------cCCCCC
Q 044615 200 YLSSNHIVGEIPLGHGMLSS-LIQLTLNNNELSGQLSPELGSLI--QLEYLDLSANTFHKSIPESLS-------NLVKLH 269 (571)
Q Consensus 200 ~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~-------~l~~L~ 269 (571)
++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..++ +|+.|++++|.+.+..|..+. .+++|+
T Consensus 359 ~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 359 NLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp ECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred ECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 88888887 67777888888 888888888888 5676666654 888888888888888887777 777888
Q ss_pred EEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCC-------CCCEEEccCCcCccccccccc--cCCCC
Q 044615 270 YLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQ-------SLEKLNLSHNNLSGSIPRCFE--EMHWL 340 (571)
Q Consensus 270 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------~L~~L~Ls~n~l~~~~p~~~~--~l~~L 340 (571)
.|++++|.++...+..+..+++|+.|+|++|.++...+..+.... +|+.|+|++|+++ .+|..+. .+++|
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 515 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL 515 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc
Confidence 899999988855445566788899999999988843333333332 8889999999988 6777776 88889
Q ss_pred CEEECcCCcCcccCCCCCccCCCCcccccCCc
Q 044615 341 SCIDISYNALQGLIPNSTAFRDAPMLALQGNK 372 (571)
Q Consensus 341 ~~L~ls~N~l~~~~~~~~~~~~~~~l~l~~n~ 372 (571)
+.|++++|++++.++....+..+..+++.+|+
T Consensus 516 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 516 VGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp CEEECCSSCCSSCCCGGGGCSSCCEEECCSCB
T ss_pred CEEECCCCCCCCcChhhhcCCCCCEEECCCCc
Confidence 99999999998854455667788888887665
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=320.20 Aligned_cols=318 Identities=21% Similarity=0.236 Sum_probs=288.0
Q ss_pred CEEEccCCccc---cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCCEEE
Q 044615 51 RDTSISFDELH---EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLD 127 (571)
Q Consensus 51 ~~l~l~~n~l~---~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 127 (571)
+.++.+.+.+. ......++.|+|++|++++ ..|..|.++++|++|+|++|.+++..|..|.++++|++|+
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 86 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT-------LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE-------ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccce-------ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEE
Confidence 45677766665 3334689999999999997 5577899999999999999999988899999999999999
Q ss_pred cccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCccc
Q 044615 128 LSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIV 207 (571)
Q Consensus 128 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~ 207 (571)
|++|.++...+..|.++++|++|+|++|.+.+..|..|..+++|++|++++|.+.+..+..|..+++ |+.|++++|.++
T Consensus 87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~ 165 (477)
T 2id5_A 87 LRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS-LEQLTLEKCNLT 165 (477)
T ss_dssp CCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT-CCEEEEESCCCS
T ss_pred CCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCC-CCEEECCCCcCc
Confidence 9999999877778999999999999999999888999999999999999999999887888888886 999999999999
Q ss_pred ccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhh
Q 044615 208 GEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIE 287 (571)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 287 (571)
+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+.++.......+|+.|++++|.+++..+..+.
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 245 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc
Confidence 77777789999999999999999998888999999999999999988777777777777999999999999976667899
Q ss_pred cccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCCC-CccCCCCcc
Q 044615 288 KLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNS-TAFRDAPML 366 (571)
Q Consensus 288 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~~~~~~l 366 (571)
.+++|+.|+|++|.+.+..+..+..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+.. ..+..+..+
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence 9999999999999999988888999999999999999999999999999999999999999999887653 456788999
Q ss_pred cccCCcCCCC
Q 044615 367 ALQGNKRLCG 376 (571)
Q Consensus 367 ~l~~n~~~c~ 376 (571)
.+.+|+..|.
T Consensus 326 ~l~~N~l~c~ 335 (477)
T 2id5_A 326 ILDSNPLACD 335 (477)
T ss_dssp ECCSSCEECS
T ss_pred EccCCCccCc
Confidence 9999998885
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.4e-36 Score=319.11 Aligned_cols=315 Identities=22% Similarity=0.217 Sum_probs=195.3
Q ss_pred CCchhhcCCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCccc
Q 044615 39 DDYKELVRAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGS 112 (571)
Q Consensus 39 ~~~~~l~~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~ 112 (571)
.+|..+. .+++.|++++|.+. +..+++|++|+|++|++++ ..|..|+++++|++|+|++|.++ .
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~Ls~N~l~-~ 83 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-------LDISVFKFNQELEYLDLSHNKLV-K 83 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE-------EEGGGGTTCTTCCEEECCSSCCC-E
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCC-------cChHHhhcccCCCEEecCCCcee-e
Confidence 3455444 67888888888766 5677788888888888776 55777788888888888888877 4
Q ss_pred ccccccCCCCCCEEEcccCcCcc-cccccccCCCCCCeeecccCcCcccCCccccCCCCC--CEEEccCCCC--CccCCh
Q 044615 113 IPLALGNLTNLVVLDLSTNKLSG-SIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSL--SILDLSSNKL--NGSIPL 187 (571)
Q Consensus 113 ~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~p~ 187 (571)
+|.. .+++|++|+|++|.+++ .+|..|+++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|.
T Consensus 84 lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~ 158 (520)
T 2z7x_B 84 ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPE 158 (520)
T ss_dssp EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccc
Confidence 5554 67788888888888776 356778888888888888887764 345556666 7777777766 444444
Q ss_pred hhhhcc--------------------------------------------------------------------------
Q 044615 188 SLANLT-------------------------------------------------------------------------- 193 (571)
Q Consensus 188 ~~~~l~-------------------------------------------------------------------------- 193 (571)
.+..+.
T Consensus 159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 238 (520)
T 2z7x_B 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238 (520)
T ss_dssp TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHH
T ss_pred cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHH
Confidence 433311
Q ss_pred --------CCCcEEEccCCcccccCCccc-----cCCCCCcEEeCccCcCcCCCC-hh----------------------
Q 044615 194 --------NSLKVLYLSSNHIVGEIPLGH-----GMLSSLIQLTLNNNELSGQLS-PE---------------------- 237 (571)
Q Consensus 194 --------~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~-~~---------------------- 237 (571)
.+|+.|++++|.+++.+|..+ +.+++|+.+++++|.+ .+| ..
T Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH 316 (520)
T ss_dssp HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc
Confidence 147777777777776666655 4444444444444443 111 10
Q ss_pred ---hhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCcc--CcchhhhcccCCCEEEccCCcCCcccch-hcc
Q 044615 238 ---LGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQ--KIPNKIEKLIHLSELDLSHNIFREEIPS-QIC 311 (571)
Q Consensus 238 ---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~ 311 (571)
+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++ .+|..+..+++|+.|++++|.+.+.+|. .+.
T Consensus 317 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 1445566666666666665555666666666666666666654 3344556666666666666666553333 355
Q ss_pred CCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCCCCccCCCCcccccCCc
Q 044615 312 SMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNK 372 (571)
Q Consensus 312 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~l~l~~n~ 372 (571)
.+++|+.|++++|++++..|..+. +.|+.|++++|+++..++....+..+..+++.+|+
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc
Confidence 556666666666666555554443 45666666666665443333445555556666554
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.9e-35 Score=321.47 Aligned_cols=323 Identities=21% Similarity=0.187 Sum_probs=185.0
Q ss_pred hhcCCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCccccccc
Q 044615 43 ELVRAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLA 116 (571)
Q Consensus 43 ~l~~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~ 116 (571)
.+.++++|++|++++|.+. +..+++|++|+|++|.+++ ..|..|+++++|++|+|++|.+++..|..
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~L~~n~i~~l~~~~ 124 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-------MAETALSGPKALKHLFFIQTGISSIDFIP 124 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE-------ECTTTTSSCTTCCEEECTTSCCSCGGGSC
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc-------cChhhhcccccccEeeccccCcccCCcch
Confidence 4444444444444444433 3444444444444444443 33444444444444444444444433444
Q ss_pred ccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCC--EEEccCCCCCccCChhhhhc--
Q 044615 117 LGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLS--ILDLSSNKLNGSIPLSLANL-- 192 (571)
Q Consensus 117 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~p~~~~~l-- 192 (571)
|+++++|++|++++|.+++.....+..+++|++|++++|.+.+..|..+..+++|+ .|++++|++.+..|..+...
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L 204 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEE
T ss_pred hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccc
Confidence 44444445555544444433222233344455555555544444444444444444 44555554443333222110
Q ss_pred -----------------------------------------------c-CCCcEEEccCCcccccCCccccCCCCCcEEe
Q 044615 193 -----------------------------------------------T-NSLKVLYLSSNHIVGEIPLGHGMLSSLIQLT 224 (571)
Q Consensus 193 -----------------------------------------------~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 224 (571)
. .+|+.|++++|.+++..+..+..+++|++|+
T Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 284 (606)
T 3t6q_A 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284 (606)
T ss_dssp EEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEE
T ss_pred cccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEe
Confidence 0 0244555555555544455566667777777
Q ss_pred CccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcch-hhhcccCCCEEEccCCcCC
Q 044615 225 LNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPN-KIEKLIHLSELDLSHNIFR 303 (571)
Q Consensus 225 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~ 303 (571)
+++|.++ .+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.++. .+..+++|+.|++++|.+.
T Consensus 285 l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 285 LTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363 (606)
T ss_dssp CTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred ccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc
Confidence 7777776 4566677777777777777777766666777777777777777777654443 3667777777777777776
Q ss_pred ccc--chhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCC--CCccCCCCcccccCCcC
Q 044615 304 EEI--PSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPN--STAFRDAPMLALQGNKR 373 (571)
Q Consensus 304 ~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~--~~~~~~~~~l~l~~n~~ 373 (571)
+.. +..+..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..|. ...++.+..+++.+|..
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence 654 55677777777777777777777777777777777777777777766543 34556677777777654
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.9e-36 Score=323.75 Aligned_cols=281 Identities=25% Similarity=0.297 Sum_probs=212.2
Q ss_pred cccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCc-cccCCCC
Q 044615 92 EIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPK-EIGNMNS 170 (571)
Q Consensus 92 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~ 170 (571)
.|+++++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+.++++|++|++++|.+.+.+|. .+..+++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 3667777788888877776 5677777777788888888877777677777777888888877777655543 4777788
Q ss_pred CCEEEccCCCCCccC--ChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCCh-hhhCCCCCCEE
Q 044615 171 LSILDLSSNKLNGSI--PLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSP-ELGSLIQLEYL 247 (571)
Q Consensus 171 L~~L~L~~n~l~~~~--p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L 247 (571)
|++|++++|++.+.. |..+..+++ |+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+. .+..+++|+.|
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSH-LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTT-CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred CCEEECCCCccccccCcchhcccCCC-CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 888888888777544 556666665 88888888887777777777788888888888887766543 37778888888
Q ss_pred EcccCccccccchhhccCCCCCEEEcCCccCccC---cchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCC
Q 044615 248 DLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQK---IPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHN 324 (571)
Q Consensus 248 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 324 (571)
++++|.+.+..|..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++..|..+..+++|+.|+|++|
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 8888888777777778888888888888887652 2245777788888888888888777777888888888888888
Q ss_pred cCccccccccccCCCCCEEECcCCcCcccCCCC-CccCCCCcccccCCcCCC
Q 044615 325 NLSGSIPRCFEEMHWLSCIDISYNALQGLIPNS-TAFRDAPMLALQGNKRLC 375 (571)
Q Consensus 325 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~~~~~~l~l~~n~~~c 375 (571)
++++..|..|..++.| .|++++|++++.+|.. ..+..+..+++.+|++.|
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 8888888888888888 8888888888776652 445667778888887776
No 13
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.9e-35 Score=318.17 Aligned_cols=322 Identities=20% Similarity=0.190 Sum_probs=210.5
Q ss_pred CCCCCchhhcCCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcC
Q 044615 36 GLGDDYKELVRAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENIL 109 (571)
Q Consensus 36 ~~~~~~~~l~~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i 109 (571)
++..+|..+. .+++.|++++|.+. +..+++|++|+|++|++++ ..|..|.++++|++|+|++|.+
T Consensus 42 ~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 42 NLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-------LDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp CCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-------ECTTTTTTCTTCCEEECTTSCC
T ss_pred CCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-------CCHHHhCCCCCCCEEECCCCcC
Confidence 4455666654 78999999999877 6788899999999999987 5678889999999999999999
Q ss_pred cccccccccCCCCCCEEEcccCcCccc-ccccccCCCCCCeeecccCcCcccCCccccCCCCC--CEEEccCCCC--Ccc
Q 044615 110 NGSIPLALGNLTNLVVLDLSTNKLSGS-IPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSL--SILDLSSNKL--NGS 184 (571)
Q Consensus 110 ~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~ 184 (571)
+ .+|.. .+++|++|+|++|.+++. .|..|+++++|++|++++|.+.+. .+..+++| ++|++++|++ .+.
T Consensus 113 ~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 113 Q-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp C-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSS
T ss_pred C-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccccc
Confidence 8 56655 789999999999999864 467899999999999999998753 34455555 8888888888 555
Q ss_pred CChhhhhcc-----------------------------------------------------------------------
Q 044615 185 IPLSLANLT----------------------------------------------------------------------- 193 (571)
Q Consensus 185 ~p~~~~~l~----------------------------------------------------------------------- 193 (571)
.|..+..+.
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 266 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH
T ss_pred CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH
Confidence 454443321
Q ss_pred ---------CCCcEEEccCCcccccCCccc--------------------------------------------------
Q 044615 194 ---------NSLKVLYLSSNHIVGEIPLGH-------------------------------------------------- 214 (571)
Q Consensus 194 ---------~~L~~L~l~~n~~~~~~~~~~-------------------------------------------------- 214 (571)
.+|+.|++++|.+++.+|..+
T Consensus 267 ~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346 (562)
T ss_dssp HHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc
Confidence 137777777777776666544
Q ss_pred ---cCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccc--cchhhccCCCCCEEEcCCccCccCcc-hhhhc
Q 044615 215 ---GMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKS--IPESLSNLVKLHYLNLSNNQFSQKIP-NKIEK 288 (571)
Q Consensus 215 ---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~ 288 (571)
..+++|++|++++|.+++..|..+..+++|+.|++++|.+++. .|..+.++++|+.|++++|.+++.+| ..+..
T Consensus 347 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 426 (562)
T 3a79_B 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426 (562)
T ss_dssp CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC
Confidence 3445555566666655555555555556666666666555542 23445555566666666666555233 23455
Q ss_pred ccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCC-CCccCCCCccc
Q 044615 289 LIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPN-STAFRDAPMLA 367 (571)
Q Consensus 289 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~~~~~~l~ 367 (571)
+++|+.|++++|.+++..|..+. ++|+.|+|++|+++ .+|..+..++.|+.|++++|+++..++. ...++.+..++
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEE
T ss_pred cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEE
Confidence 55566666666655544443332 45666666666655 3444444556666666666666644443 34445555555
Q ss_pred ccCCcCCC
Q 044615 368 LQGNKRLC 375 (571)
Q Consensus 368 l~~n~~~c 375 (571)
+.+|++.|
T Consensus 504 l~~N~~~c 511 (562)
T 3a79_B 504 LHDNPWDC 511 (562)
T ss_dssp CCSCCBCC
T ss_pred ecCCCcCC
Confidence 66665544
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-36 Score=336.18 Aligned_cols=210 Identities=27% Similarity=0.303 Sum_probs=112.6
Q ss_pred CccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCC
Q 044615 162 PKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSL 241 (571)
Q Consensus 162 ~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 241 (571)
|..+..+++|+.|+|++|++.+..|..|..+++ |+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..|..+
T Consensus 283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDN-LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSS-CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCC-CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 334444555555555555555444444544443 5555555555554445555555555555555555555444455555
Q ss_pred CCCCEEEcccCcccccc----------------------------------------chhhccCCCCCEEEcCCccCccC
Q 044615 242 IQLEYLDLSANTFHKSI----------------------------------------PESLSNLVKLHYLNLSNNQFSQK 281 (571)
Q Consensus 242 ~~L~~L~L~~n~l~~~~----------------------------------------~~~l~~l~~L~~L~Ls~n~l~~~ 281 (571)
++|+.|++++|.+++.. +..+..+++|+.|++++|++++.
T Consensus 362 ~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 441 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441 (844)
T ss_dssp CCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCC
T ss_pred CCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccc
Confidence 55555555555443210 00122344455555555544422
Q ss_pred cc------------------------------hhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccc
Q 044615 282 IP------------------------------NKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIP 331 (571)
Q Consensus 282 ~~------------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 331 (571)
.+ ..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..|
T Consensus 442 ~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 521 (844)
T 3j0a_A 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521 (844)
T ss_dssp CSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCC
T ss_pred ccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccCh
Confidence 11 123334445555555555555555555566666666666666665555
Q ss_pred cccccCCCCCEEECcCCcCcccCCCCCccCCCCcccccCCcCCCC
Q 044615 332 RCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRLCG 376 (571)
Q Consensus 332 ~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~l~l~~n~~~c~ 376 (571)
..+. ++|+.|++++|++++.+|. .+..+..+++.+|++.|.
T Consensus 522 ~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 522 NDLP--ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICE 562 (844)
T ss_dssp CCCC--SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCS
T ss_pred hhhh--ccccEEECCCCcCCCCChh--HhCCcCEEEecCCCcccc
Confidence 4444 5566666666666666554 356788889999999984
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-35 Score=328.25 Aligned_cols=319 Identities=19% Similarity=0.215 Sum_probs=243.8
Q ss_pred CchhhcCCCCCCEEEccCCcccc-----------------------C--CCCccceeecccccccCCCCCCCcccccccc
Q 044615 40 DYKELVRAVQARDTSISFDELHE-----------------------K--LLTFEATAHFSVLAFTGQDWPLYSSIPDEIG 94 (571)
Q Consensus 40 ~~~~l~~~~~l~~l~l~~n~l~~-----------------------~--~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~ 94 (571)
+|++++++++|+.|+|++|.++- + .+++|+.|+|+.|.+.+ .+|..|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~-------~iP~~l~ 512 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT-------QLPDFLY 512 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC-------SCCGGGG
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc-------cChHHHh
Confidence 78899999999999999997652 2 78999999999999998 8899999
Q ss_pred CCCCCCEEecccCc-Ccc-cccccccCCC-------CCCEEEcccCcCcccccc--cccCCCCCCeeecccCcCcccCCc
Q 044615 95 NMKSLSDLQLSENI-LNG-SIPLALGNLT-------NLVVLDLSTNKLSGSIPL--SFANLTSLSILYLYENSLCDSIPK 163 (571)
Q Consensus 95 ~l~~L~~L~L~~n~-i~~-~~~~~~~~l~-------~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~ 163 (571)
++++|++|+|++|+ +++ .+|..++.++ +|++|+|++|.++ .+|. .|+++++|++|+|++|.+. .+|
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence 99999999999998 887 7887666554 9999999999998 7787 8999999999999999998 777
Q ss_pred cccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCC--CcEEeCccCcCcCCCChh---h
Q 044615 164 EIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSS--LIQLTLNNNELSGQLSPE---L 238 (571)
Q Consensus 164 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~---~ 238 (571)
.+..+++|+.|++++|++. .+|..+..++++|+.|++++|.++ .+|..+..++. |+.|++++|++.+.+|.. +
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 8999999999999999998 888888888755999999999988 67776666544 888888888887654422 2
Q ss_pred h--CCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhc--------ccCCCEEEccCCcCCcccch
Q 044615 239 G--SLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEK--------LIHLSELDLSHNIFREEIPS 308 (571)
Q Consensus 239 ~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~ 308 (571)
. .+++|+.|++++|.+....+..+..+++|+.|+|++|.++ .+|..+.. +++|+.|+|++|+++ .+|.
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~ 745 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD 745 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence 2 2346777777777776433333446777777777777776 33433222 236777777777776 4566
Q ss_pred hcc--CCCCCCEEEccCCcCccccccccccCCCCCEEECcC------CcCcccCCC-CCccCCCCcccccCCcC
Q 044615 309 QIC--SMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISY------NALQGLIPN-STAFRDAPMLALQGNKR 373 (571)
Q Consensus 309 ~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~------N~l~~~~~~-~~~~~~~~~l~l~~n~~ 373 (571)
.+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|. ...++.+..+++.+|..
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 665 77777777777777776 566677777777777755 556666554 34456667777777764
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.9e-35 Score=327.57 Aligned_cols=307 Identities=22% Similarity=0.239 Sum_probs=266.2
Q ss_pred CCCCCchhhcCCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccc-cccccCCCCCCEEecccCc
Q 044615 36 GLGDDYKELVRAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSI-PDEIGNMKSLSDLQLSENI 108 (571)
Q Consensus 36 ~~~~~~~~l~~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~-p~~~~~l~~L~~L~L~~n~ 108 (571)
++..+|. -..+++.|+|++|.++ +..+++|+.|+|++|...+ .+ |..|+++++|++|+|++|.
T Consensus 15 ~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~-------~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 15 NLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL-------TIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp CSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC-------EECTTTTSSCTTCCEEECTTCC
T ss_pred CCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc-------ccCHHHhcCCCCCCEEECCCCc
Confidence 4555666 4578999999999887 7889999999999997665 55 7789999999999999999
Q ss_pred CcccccccccCCCCCCEEEcccCcCccccccc--ccCCCCCCeeecccCcCcccCC-ccccCCCCCCEEEccCCCCCccC
Q 044615 109 LNGSIPLALGNLTNLVVLDLSTNKLSGSIPLS--FANLTSLSILYLYENSLCDSIP-KEIGNMNSLSILDLSSNKLNGSI 185 (571)
Q Consensus 109 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~ 185 (571)
+.+..|..|+++++|++|+|++|.+++..|.. |+++++|++|+|++|.+.+..+ ..|+++++|++|++++|.+.+..
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 99888999999999999999999998766655 9999999999999999987655 57999999999999999999888
Q ss_pred Chhhhhc--cCCCcEEEccCCcccccCCccccCCCC------CcEEeCccCcCcCCCChhhhC-----------------
Q 044615 186 PLSLANL--TNSLKVLYLSSNHIVGEIPLGHGMLSS------LIQLTLNNNELSGQLSPELGS----------------- 240 (571)
Q Consensus 186 p~~~~~l--~~~L~~L~l~~n~~~~~~~~~~~~l~~------L~~L~l~~n~l~~~~~~~~~~----------------- 240 (571)
+..+..+ . +|+.|+++.|.+.+..|..++.+++ |+.|++++|.+++..+..+..
T Consensus 165 ~~~l~~l~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 165 EHELEPLQGK-TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp SGGGHHHHHC-SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred HHHcccccCC-ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 8888876 5 4999999999998887777666655 999999999877655543322
Q ss_pred ---------------------CCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccC
Q 044615 241 ---------------------LIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSH 299 (571)
Q Consensus 241 ---------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 299 (571)
.++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..|..+++|+.|+|++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 26799999999999888888899999999999999999988888899999999999999
Q ss_pred CcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCccc
Q 044615 300 NIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGL 353 (571)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 353 (571)
|.+.+..|..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++.
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred CCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 999888888899999999999999999888888899999999999999988764
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.9e-35 Score=320.94 Aligned_cols=336 Identities=23% Similarity=0.247 Sum_probs=249.5
Q ss_pred chhhcCCC--CCCEEEccCCccc------cCCCCccceeecccccccCCCCCCC----------------------cccc
Q 044615 41 YKELVRAV--QARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLY----------------------SSIP 90 (571)
Q Consensus 41 ~~~l~~~~--~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~----------------------~~~p 90 (571)
|..+..+. +|+.|++++|.+. +..+++|+.|++++|.+++.....+ ..+|
T Consensus 239 ~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp 318 (680)
T 1ziw_A 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318 (680)
T ss_dssp TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CC
T ss_pred hhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccc
Confidence 34444443 3777777777665 5566777777777776665110000 0112
Q ss_pred c----cccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcc--cccccccCC--CCCCeeecccCcCcccCC
Q 044615 91 D----EIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSG--SIPLSFANL--TSLSILYLYENSLCDSIP 162 (571)
Q Consensus 91 ~----~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l--~~L~~L~L~~n~l~~~~~ 162 (571)
. .|..+++|++|++++|.+.+..+..|.++++|++|++++|.+.. ..+..|..+ ++|+.|++++|.+.+..|
T Consensus 319 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh
Confidence 1 34455566666666666655555556666666666666655321 112222222 356666777777777777
Q ss_pred ccccCCCCCCEEEccCCCCCccCC-hhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCc--CCCChhhh
Q 044615 163 KEIGNMNSLSILDLSSNKLNGSIP-LSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELS--GQLSPELG 239 (571)
Q Consensus 163 ~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~ 239 (571)
..+..+++|+.|++++|++.+.+| ..+..++. |+.|++++|.+.+..+..+..+++|+.|++++|.+. +..|..+.
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN-IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTT-CCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCccc-ccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 888888899999999998876666 46666665 999999999888878888888899999999998886 46788899
Q ss_pred CCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcc--------hhhhcccCCCEEEccCCcCCcccchhcc
Q 044615 240 SLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIP--------NKIEKLIHLSELDLSHNIFREEIPSQIC 311 (571)
Q Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 311 (571)
.+++|+.|++++|.+++..+..+.++++|+.|++++|.+++..+ ..+..+++|+.|+|++|++....+..|.
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 557 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence 99999999999999998888889999999999999999976422 2378889999999999999876666799
Q ss_pred CCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCCCC--ccCCCCcccccCCcCCCCC
Q 044615 312 SMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNST--AFRDAPMLALQGNKRLCGD 377 (571)
Q Consensus 312 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~--~~~~~~~l~l~~n~~~c~~ 377 (571)
++++|+.|+|++|++++..+..|..++.|+.|++++|++++.++... .++.+..+++.+|++.|..
T Consensus 558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 99999999999999998888889999999999999999998877532 4678899999999999853
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-35 Score=317.14 Aligned_cols=158 Identities=27% Similarity=0.301 Sum_probs=105.4
Q ss_pred cCCCCCcEEeCccCcCcCCC--ChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcc-hhhhcccC
Q 044615 215 GMLSSLIQLTLNNNELSGQL--SPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIP-NKIEKLIH 291 (571)
Q Consensus 215 ~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~ 291 (571)
..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+.+..+. +..+++|+.|++++|.+++..+ ..+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 34567888888888877543 56677777888888887777654433 6677777777777777665544 35666667
Q ss_pred CCEEEccCCcCCcccchhccCCCCCCEEEccCCcCc-cccccccccCCCCCEEECcCCcCcccCCC-CCccCCCCccccc
Q 044615 292 LSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLS-GSIPRCFEEMHWLSCIDISYNALQGLIPN-STAFRDAPMLALQ 369 (571)
Q Consensus 292 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~~~~~~l~l~ 369 (571)
|+.|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|. ...++.+..+++.
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 777777777766666666666677777777777665 45666666666677777777766666543 3445566666666
Q ss_pred CCcC
Q 044615 370 GNKR 373 (571)
Q Consensus 370 ~n~~ 373 (571)
+|..
T Consensus 503 ~n~l 506 (570)
T 2z63_A 503 SNQL 506 (570)
T ss_dssp SSCC
T ss_pred CCcC
Confidence 6643
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.1e-35 Score=291.31 Aligned_cols=259 Identities=29% Similarity=0.507 Sum_probs=182.4
Q ss_pred CCCCEEecccCcCcc--cccccccCCCCCCEEEccc-CcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCE
Q 044615 97 KSLSDLQLSENILNG--SIPLALGNLTNLVVLDLST-NKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSI 173 (571)
Q Consensus 97 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 173 (571)
.+++.|+|++|.+.+ .+|..|+++++|++|+|++ |.+.+.+|..|+++++|++|+|++|.+.+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456677777777766 5666666666666666663 6666666666666666666666666666566666666666666
Q ss_pred EEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCC-CCCEEEcccC
Q 044615 174 LDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLI-QLEYLDLSAN 252 (571)
Q Consensus 174 L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n 252 (571)
|++++|++.+.+|..+..+ ++|++|++++|++++.+|..+..++ +|+.|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l-------------------------~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSL-------------------------PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp EECCSSEEESCCCGGGGGC-------------------------TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred EeCCCCccCCcCChHHhcC-------------------------CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 6666666555555555444 4444455555555444555555555 6666666666
Q ss_pred ccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCcccccc
Q 044615 253 TFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPR 332 (571)
Q Consensus 253 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 332 (571)
.+++.+|..+..++ |+.|++++|.+++..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|.
T Consensus 185 ~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG
T ss_pred eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh
Confidence 66666666666665 77777777777766677777777777777777777765554 77788899999999999888899
Q ss_pred ccccCCCCCEEECcCCcCcccCCCCCccCCCCcccccCCcCCCCCCCCCCCC
Q 044615 333 CFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRLCGDIKRLPPC 384 (571)
Q Consensus 333 ~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~l~l~~n~~~c~~~~~~~~~ 384 (571)
.|..+++|+.|++++|++++.+|....++.+..+.+.+|+..|+.+. ++|
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~--~~C 312 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL--PAC 312 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTS--SCC
T ss_pred HHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCC--CCC
Confidence 99999999999999999998888877788899999999999998633 356
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=309.00 Aligned_cols=134 Identities=27% Similarity=0.327 Sum_probs=87.7
Q ss_pred hCCCCCCEEEcccCcccccc--chhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccc-hhccCCCC
Q 044615 239 GSLIQLEYLDLSANTFHKSI--PESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIP-SQICSMQS 315 (571)
Q Consensus 239 ~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~ 315 (571)
..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+++..+. +..+++|+.|++++|.+.+..+ ..+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 34566677777777666443 55666777777777777777654443 6667777777777777666544 35666777
Q ss_pred CCEEEccCCcCccccccccccCCCCCEEECcCCcCc-ccCC-CCCccCCCCcccccCCcC
Q 044615 316 LEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQ-GLIP-NSTAFRDAPMLALQGNKR 373 (571)
Q Consensus 316 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~~-~~~~~~~~~~l~l~~n~~ 373 (571)
|+.|++++|.+++..|..|..+++|+.|++++|.++ +..| ....++.+..+++.+|..
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 777777777777767777777777777777777765 3333 244556666677766653
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.6e-35 Score=325.45 Aligned_cols=276 Identities=22% Similarity=0.324 Sum_probs=146.3
Q ss_pred cccccc--CCCCCCEEecccCcCcccccccccCCCCCCEEEcccCc-Ccc-cccccccCCC-------CCCeeecccCcC
Q 044615 89 IPDEIG--NMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNK-LSG-SIPLSFANLT-------SLSILYLYENSL 157 (571)
Q Consensus 89 ~p~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l~-------~L~~L~L~~n~l 157 (571)
+|+.++ ++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++ .+|..+++++ +|++|+|++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 444444 55555555555555555555555555555555555554 444 4444433333 555555555555
Q ss_pred cccCCc--cccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCC-CcEEeCccCcCcCCC
Q 044615 158 CDSIPK--EIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSS-LIQLTLNNNELSGQL 234 (571)
Q Consensus 158 ~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~ 234 (571)
. .+|. .+..+++|++|+|++|++. .+| .+..+++ |+.|++++|.++ .+|..+..+++ |+.|++++|.+. .+
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~-L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK-LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE-ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc-ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 4 4444 4555555555555555554 444 4444443 555555555554 44444555555 555555555555 34
Q ss_pred ChhhhCCCC--CCEEEcccCccccccchh---hc--cCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccc
Q 044615 235 SPELGSLIQ--LEYLDLSANTFHKSIPES---LS--NLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIP 307 (571)
Q Consensus 235 ~~~~~~l~~--L~~L~L~~n~l~~~~~~~---l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 307 (571)
|..+..++. |+.|++++|.+.+.+|.. +. .+++|+.|++++|.++...+..+..+++|+.|+|++|.+.. +|
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~-ip 713 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS-IP 713 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC-CC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCc-cC
Confidence 444444332 555555555554433321 11 22356666666666663322333456667777777776663 33
Q ss_pred hhccC-C-------CCCCEEEccCCcCccccccccc--cCCCCCEEECcCCcCcccCCCCCccCCCCcccccCCc
Q 044615 308 SQICS-M-------QSLEKLNLSHNNLSGSIPRCFE--EMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNK 372 (571)
Q Consensus 308 ~~~~~-l-------~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~l~l~~n~ 372 (571)
..+.. . ++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++.++....++.+..+.+.+|+
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC
Confidence 33222 1 26777777777776 5566665 6677777777777777644444556666666666654
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.8e-34 Score=312.26 Aligned_cols=327 Identities=24% Similarity=0.233 Sum_probs=253.9
Q ss_pred chhhcCCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcc-cc
Q 044615 41 YKELVRAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNG-SI 113 (571)
Q Consensus 41 ~~~l~~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~-~~ 113 (571)
|..+.++.+|++|+|++|.+. +..+++|++|++++|.+++ ..|..++++++|++|++++|.+.+ .+
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~l 145 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-------LESFPIGQLITLKKLNVAHNFIHSCKL 145 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCC-------SSSSCCTTCTTCCEEECCSSCCCCCCC
T ss_pred HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccc-------ccccccCCCCCCCEEeCCCCcccceec
Confidence 455677777888888777665 5677777777887777775 334567777778888888777765 45
Q ss_pred cccccCCCCCCEEEcccCcCcccccccccCCC------------------------------------------------
Q 044615 114 PLALGNLTNLVVLDLSTNKLSGSIPLSFANLT------------------------------------------------ 145 (571)
Q Consensus 114 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~------------------------------------------------ 145 (571)
|..|+++++|++|++++|.+++..|..|+.++
T Consensus 146 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 225 (606)
T 3vq2_A 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCL 225 (606)
T ss_dssp CGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHH
T ss_pred hHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHh
Confidence 77777777787777777777655444332222
Q ss_pred --------------------------------------------------------------------------------
Q 044615 146 -------------------------------------------------------------------------------- 145 (571)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (571)
T Consensus 226 ~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~ 305 (606)
T 3vq2_A 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK 305 (606)
T ss_dssp HTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCT
T ss_pred ccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccc
Confidence
Q ss_pred --CCCeeecccCcCcccCCc--------------------cccCCCCCCEEEccCCCCCcc--CChhhhhccCCCcEEEc
Q 044615 146 --SLSILYLYENSLCDSIPK--------------------EIGNMNSLSILDLSSNKLNGS--IPLSLANLTNSLKVLYL 201 (571)
Q Consensus 146 --~L~~L~L~~n~l~~~~~~--------------------~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~~L~~L~l 201 (571)
+|++|++++|.+ +.+|. .+..+++|++|++++|++++. .|..+..++. |+.|++
T Consensus 306 ~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~-L~~L~L 383 (606)
T 3vq2_A 306 HFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS-LRHLDL 383 (606)
T ss_dssp TCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSC-CCEEEC
T ss_pred cccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCc-ccEeEC
Confidence 122222222222 11110 122344555555555555433 2566666665 999999
Q ss_pred cCCcccccCCccccCCCCCcEEeCccCcCcCCCC-hhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCcc
Q 044615 202 SSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLS-PELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQ 280 (571)
Q Consensus 202 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 280 (571)
++|.+.+ +|..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+.++++|+.|++++|.+++
T Consensus 384 ~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 384 SFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462 (606)
T ss_dssp CSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence 9999985 56888999999999999999998877 689999999999999999999899999999999999999999987
Q ss_pred -CcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCCCCc
Q 044615 281 -KIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTA 359 (571)
Q Consensus 281 -~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~ 359 (571)
.+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..|..+++|+.|++++|+++..++....
T Consensus 463 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~ 542 (606)
T 3vq2_A 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542 (606)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGG
T ss_pred cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhh
Confidence 4788899999999999999999999999999999999999999999999999999999999999999999977666555
Q ss_pred cC-CCCcccccCCcCCCCC
Q 044615 360 FR-DAPMLALQGNKRLCGD 377 (571)
Q Consensus 360 ~~-~~~~l~l~~n~~~c~~ 377 (571)
+. .+..+++.+|++.|..
T Consensus 543 l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 543 FPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp SCTTCCEEECCSCCCCCSS
T ss_pred hcccCcEEEccCCCcccCC
Confidence 54 5899999999999853
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.6e-34 Score=314.16 Aligned_cols=323 Identities=23% Similarity=0.248 Sum_probs=171.0
Q ss_pred hhcCCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCccccccc
Q 044615 43 ELVRAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLA 116 (571)
Q Consensus 43 ~l~~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~ 116 (571)
.+.++++|++|++++|.+. +..++.|++|+|++|.++. ..+..|+++++|++|+|++|.+++..|..
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 116 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-------LSDKTFAFCTNLTELHLMSNSIQKIKNNP 116 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-------CCTTTTTTCTTCSEEECCSSCCCCCCSCT
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-------cChhhhccCCCCCEEECCCCccCccChhH
Confidence 3455555555555555444 3344555555555555543 11223555555555555555555444455
Q ss_pred ccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCcccc--CCCCCCEEEccCCCCCccCChhhhhcc-
Q 044615 117 LGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIG--NMNSLSILDLSSNKLNGSIPLSLANLT- 193 (571)
Q Consensus 117 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~- 193 (571)
|+++++|++|+|++|.+++..|..++++++|++|++++|.+.+..+..+. .+++|++|++++|++.+..|..+..+.
T Consensus 117 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 196 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196 (680)
T ss_dssp TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSE
T ss_pred ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhh
Confidence 55555555555555555555555555555555555555555544333322 335555555555555544443333221
Q ss_pred -------------------------CCCcEEEccCCcccccCCccccCCCC--CcEEeCccCcCcCCCChhhhCCCCCCE
Q 044615 194 -------------------------NSLKVLYLSSNHIVGEIPLGHGMLSS--LIQLTLNNNELSGQLSPELGSLIQLEY 246 (571)
Q Consensus 194 -------------------------~~L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~ 246 (571)
.+|+.|++++|.+.+..|..+..++. |+.|++++|.+.+..+..|+.+++|+.
T Consensus 197 L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (680)
T 1ziw_A 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276 (680)
T ss_dssp ECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred hhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccE
Confidence 12555555555555555555555433 777777777777666667777777777
Q ss_pred EEcccCccccccchhhccCCCCCEEEcCCccCcc-----Ccc----hhhhcccCCCEEEccCCcCCcccchhccCCCCCC
Q 044615 247 LDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQ-----KIP----NKIEKLIHLSELDLSHNIFREEIPSQICSMQSLE 317 (571)
Q Consensus 247 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 317 (571)
|++++|.+.+..|..+.++++|+.|++++|...+ .+| ..+..+++|+.|++++|.+.+..+..|..+++|+
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 356 (680)
T 1ziw_A 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356 (680)
T ss_dssp EECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCC
T ss_pred eeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCc
Confidence 7777777766666555555555555555443221 111 1344455555555555555555555555554444
Q ss_pred EEEcc----------------------------CCcCccccccccccCCCCCEEECcCCcCcccCCC--CCccCCCCccc
Q 044615 318 KLNLS----------------------------HNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPN--STAFRDAPMLA 367 (571)
Q Consensus 318 ~L~Ls----------------------------~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~--~~~~~~~~~l~ 367 (571)
.|+++ +|++++..|..|..+++|+.|++++|.+++.+|. ...+..+..++
T Consensus 357 ~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 436 (680)
T 1ziw_A 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436 (680)
T ss_dssp EEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEE
T ss_pred EEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEe
Confidence 44443 3444444555555566666666666666554332 22334455555
Q ss_pred ccCCc
Q 044615 368 LQGNK 372 (571)
Q Consensus 368 l~~n~ 372 (571)
+.+|+
T Consensus 437 Ls~n~ 441 (680)
T 1ziw_A 437 LSYNK 441 (680)
T ss_dssp CCSCS
T ss_pred cCCCC
Confidence 55554
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-34 Score=310.44 Aligned_cols=321 Identities=22% Similarity=0.243 Sum_probs=178.7
Q ss_pred hhhcCCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcc-ccc
Q 044615 42 KELVRAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNG-SIP 114 (571)
Q Consensus 42 ~~l~~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~-~~~ 114 (571)
..+.++++|++|++++|.+. +..+++|++|+|++|.+++ ..|..|+++++|++|+|++|.+++ ..|
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 116 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-------LSSSWFGPLSSLKYLNLMGNPYQTLGVT 116 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-------CCHHHHTTCTTCCEEECTTCCCSSSCSS
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-------cCHHHhccCCCCcEEECCCCcccccchh
Confidence 44555555555555555544 4455555555555555554 333345555555555555555553 234
Q ss_pred ccccCCCCCCEEEcccCc-CcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhcc
Q 044615 115 LALGNLTNLVVLDLSTNK-LSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLT 193 (571)
Q Consensus 115 ~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 193 (571)
..++++++|++|++++|. +....+..|.++++|++|++++|.+.+..|..+..+++|++|+++.|.+. .+|..+....
T Consensus 117 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l 195 (549)
T 2z81_A 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADIL 195 (549)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHST
T ss_pred hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhc
Confidence 455555555555555555 22222345555555555665555555555555544444444444444332 2222222212
Q ss_pred CCCcEEEccCCcccccC--Ccc----------------------------------------------------------
Q 044615 194 NSLKVLYLSSNHIVGEI--PLG---------------------------------------------------------- 213 (571)
Q Consensus 194 ~~L~~L~l~~n~~~~~~--~~~---------------------------------------------------------- 213 (571)
.+|+.|++++|.+++.. |..
T Consensus 196 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 275 (549)
T 2z81_A 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275 (549)
T ss_dssp TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTT
T ss_pred ccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchh
Confidence 23666666666665421 000
Q ss_pred ------------------------------ccCCCCCcEEeCccCcCcCCCChhh-hCCCCCCEEEcccCccccccch--
Q 044615 214 ------------------------------HGMLSSLIQLTLNNNELSGQLSPEL-GSLIQLEYLDLSANTFHKSIPE-- 260 (571)
Q Consensus 214 ------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-- 260 (571)
+...++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+.+..|.
T Consensus 276 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 354 (549)
T 2z81_A 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354 (549)
T ss_dssp CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccch
Confidence 000123445555555554 234443 4577777777777777665432
Q ss_pred -hhccCCCCCEEEcCCccCccCcc--hhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccc----
Q 044615 261 -SLSNLVKLHYLNLSNNQFSQKIP--NKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRC---- 333 (571)
Q Consensus 261 -~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~---- 333 (571)
.+..+++|+.|++++|++++..+ ..+..+++|+.|++++|++++ +|..+..+++|+.|++++|+++.. |.+
T Consensus 355 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~~~~ 432 (549)
T 2z81_A 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVV-KTCIPQT 432 (549)
T ss_dssp TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCC-CTTSCTT
T ss_pred hhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCcccc-cchhcCC
Confidence 35667777777777777765432 346667777777777777763 565666666666666666666522 211
Q ss_pred --------------cccCCCCCEEECcCCcCcccCCCCCccCCCCcccccCCcCC
Q 044615 334 --------------FEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRL 374 (571)
Q Consensus 334 --------------~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~l~l~~n~~~ 374 (571)
...++.|+.|++++|+++. +|....++.+..+++.+|...
T Consensus 433 L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 433 LEVLDVSNNNLDSFSLFLPRLQELYISRNKLKT-LPDASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp CSEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CCCGGGCTTCCEEECCSSCCC
T ss_pred ceEEECCCCChhhhcccCChhcEEECCCCccCc-CCCcccCccCCEEecCCCccC
Confidence 1257788888888888884 444556778888888888643
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.5e-34 Score=293.28 Aligned_cols=307 Identities=20% Similarity=0.188 Sum_probs=265.0
Q ss_pred cCCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCccccccccc
Q 044615 45 VRAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALG 118 (571)
Q Consensus 45 ~~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 118 (571)
..+.+++.++++++.+. +..+++|++|++++|.+++ ..|..|.++++|++|+|++|.+++..|..|+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-------IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE-------ECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc-------cChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 35688999999999887 5678999999999999986 4566899999999999999999988888899
Q ss_pred CCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcE
Q 044615 119 NLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKV 198 (571)
Q Consensus 119 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~ 198 (571)
++++|++|+|++|.++...+..|.++++|++|++++|.+.+..|..+..+++|++|++++|++++. + +..++. |+.
T Consensus 115 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~-L~~ 190 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPS-LFH 190 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGGCTT-CSE
T ss_pred CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--cccccc-cce
Confidence 999999999999999966666679999999999999999988888899999999999999999853 3 445554 999
Q ss_pred EEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccC
Q 044615 199 LYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQF 278 (571)
Q Consensus 199 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 278 (571)
|++++|.+++. ...++|+.|++++|.+... |. ...++|+.|++++|.+++. ..+..+++|+.|++++|.+
T Consensus 191 L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l 260 (390)
T 3o6n_A 191 ANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL 260 (390)
T ss_dssp EECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred eeccccccccc-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcC
Confidence 99999988742 3456899999999999865 32 2357899999999999764 5789999999999999999
Q ss_pred ccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCCCC
Q 044615 279 SQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNST 358 (571)
Q Consensus 279 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~ 358 (571)
++..|..+..+++|+.|++++|++++ +|..+..+++|+.|++++|+++ .+|..+..++.|+.|++++|+++... ..
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~ 336 (390)
T 3o6n_A 261 EKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LS 336 (390)
T ss_dssp CEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CC
T ss_pred CCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--ch
Confidence 98889999999999999999999986 5666788999999999999998 56777888999999999999998774 45
Q ss_pred ccCCCCcccccCCcCCCC
Q 044615 359 AFRDAPMLALQGNKRLCG 376 (571)
Q Consensus 359 ~~~~~~~l~l~~n~~~c~ 376 (571)
.+..++.+++.+|++.|.
T Consensus 337 ~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp TTCCCSEEECCSSCEEHH
T ss_pred hhccCCEEEcCCCCccch
Confidence 678889999999988774
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=301.61 Aligned_cols=307 Identities=25% Similarity=0.238 Sum_probs=254.5
Q ss_pred CEEEccCCccc---cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCCEEE
Q 044615 51 RDTSISFDELH---EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLD 127 (571)
Q Consensus 51 ~~l~l~~n~l~---~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 127 (571)
+.+++++|.++ ....+.++.|+|++|.+++ ..|..|.++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~-------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISE-------LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCC-------CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccc-------cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEe
Confidence 57999999888 2223789999999999987 5567899999999999999999988899999999999999
Q ss_pred cccCcCcccccccccCCCCCCeeecccCcCcc-cCCccccCCCCCCEEEccCCCCCccCChhhhhccCCC--cEEEccCC
Q 044615 128 LSTNKLSGSIPLSFANLTSLSILYLYENSLCD-SIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSL--KVLYLSSN 204 (571)
Q Consensus 128 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L--~~L~l~~n 204 (571)
|++|.++ .+|.. .+++|++|+|++|.+.+ .+|..++.+++|++|++++|++.+ ..+..+.. | +.|++++|
T Consensus 76 Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~-L~L~~L~l~~n 148 (520)
T 2z7x_B 76 LSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAH-LNISKVLLVLG 148 (520)
T ss_dssp CCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTT-SCEEEEEEEEC
T ss_pred cCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcccccc-ceeeEEEeecc
Confidence 9999998 45555 89999999999999987 478899999999999999999985 35566664 7 99999999
Q ss_pred cc--cccCCccccCCC----------------------------------------------------------------
Q 044615 205 HI--VGEIPLGHGMLS---------------------------------------------------------------- 218 (571)
Q Consensus 205 ~~--~~~~~~~~~~l~---------------------------------------------------------------- 218 (571)
.+ .+..|..+..+.
T Consensus 149 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 228 (520)
T 2z7x_B 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228 (520)
T ss_dssp TTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEE
T ss_pred cccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccc
Confidence 98 555565554422
Q ss_pred -------------------CCcEEeCccCcCcCCCChhh-----hCCCCCCEEEcccCccccccc-hh------------
Q 044615 219 -------------------SLIQLTLNNNELSGQLSPEL-----GSLIQLEYLDLSANTFHKSIP-ES------------ 261 (571)
Q Consensus 219 -------------------~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~~------------ 261 (571)
+|+.|++++|.+.+.+|..+ +.+++|+.+++++|.+ .+| ..
T Consensus 229 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~ 306 (520)
T 2z7x_B 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKN 306 (520)
T ss_dssp EEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSE
T ss_pred ccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeE
Confidence 56777777777777777766 6677666666666665 222 11
Q ss_pred -------------hccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCc--ccchhccCCCCCCEEEccCCcC
Q 044615 262 -------------LSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFRE--EIPSQICSMQSLEKLNLSHNNL 326 (571)
Q Consensus 262 -------------l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l 326 (571)
+..+++|++|++++|.+++..|..+..+++|+.|++++|++.+ .+|..+..+++|+.|++++|.+
T Consensus 307 L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred EEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence 1678999999999999999899999999999999999999987 5667899999999999999999
Q ss_pred cccccc-ccccCCCCCEEECcCCcCcccCCCCCccCCCCcccccCCcCC
Q 044615 327 SGSIPR-CFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRL 374 (571)
Q Consensus 327 ~~~~p~-~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~l~l~~n~~~ 374 (571)
++.+|. .+..++.|+.|++++|++++..|.... ..+..+++.+|...
T Consensus 387 ~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIK 434 (520)
T ss_dssp BCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-TTCCEEECCSSCCC
T ss_pred CcccccchhccCccCCEEECcCCCCCcchhhhhc-ccCCEEECCCCccc
Confidence 985555 588899999999999999887665322 67889999998654
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.8e-33 Score=306.03 Aligned_cols=333 Identities=24% Similarity=0.242 Sum_probs=253.2
Q ss_pred cCCCCCchhhcCCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCc
Q 044615 35 DGLGDDYKELVRAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENI 108 (571)
Q Consensus 35 ~~~~~~~~~l~~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~ 108 (571)
.++..+|..+. .+++.|||++|.++ |..+++|++|+|++|++++ ..|..|.++++|++|+|++|+
T Consensus 41 ~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~-------i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 41 LNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-------IEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp SCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-------ECTTTTTTCTTCCEEECTTCC
T ss_pred CCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC-------cChhHhcCCCCCCEEEccCCc
Confidence 35566777653 47899999999988 7889999999999999987 446679999999999999999
Q ss_pred CcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcc-cCCccccCCCCCCEEEccCCCCCccCCh
Q 044615 109 LNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCD-SIPKEIGNMNSLSILDLSSNKLNGSIPL 187 (571)
Q Consensus 109 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 187 (571)
+++..+..|.++++|++|+|++|++++..+..|+++++|++|+|++|.+.. ..|..+..+++|++|++++|++++..|.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 998777889999999999999999998888889999999999999999975 3578889999999999999998765554
Q ss_pred hhhhccC-------------------------------------------------------------------------
Q 044615 188 SLANLTN------------------------------------------------------------------------- 194 (571)
Q Consensus 188 ~~~~l~~------------------------------------------------------------------------- 194 (571)
.+..+..
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence 4433221
Q ss_pred ---------------------------------------------------------CCcEEEccCCcccccCCc-----
Q 044615 195 ---------------------------------------------------------SLKVLYLSSNHIVGEIPL----- 212 (571)
Q Consensus 195 ---------------------------------------------------------~L~~L~l~~n~~~~~~~~----- 212 (571)
+++.|++++|.+....+.
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L 351 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 351 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTC
T ss_pred ccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhh
Confidence 011222222221110000
Q ss_pred --------------cccCCCCCcEEeCccCcCcCC--C------------------------------------------
Q 044615 213 --------------GHGMLSSLIQLTLNNNELSGQ--L------------------------------------------ 234 (571)
Q Consensus 213 --------------~~~~l~~L~~L~l~~n~l~~~--~------------------------------------------ 234 (571)
....+++|+.|++++|.+... .
T Consensus 352 ~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 431 (635)
T 4g8a_A 352 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 431 (635)
T ss_dssp CEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSE
T ss_pred hhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcc
Confidence 011234455555555544210 0
Q ss_pred ------ChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccC-ccCcchhhhcccCCCEEEccCCcCCcccc
Q 044615 235 ------SPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQF-SQKIPNKIEKLIHLSELDLSHNIFREEIP 307 (571)
Q Consensus 235 ------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 307 (571)
+..+..+++++.++++.|.+....+..+..+++|+.|++++|.+ .+..|..+..+++|+.|+|++|++++..|
T Consensus 432 ~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~ 511 (635)
T 4g8a_A 432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511 (635)
T ss_dssp EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh
Confidence 11233445556666666666666666777788888888888874 34567788889999999999999999888
Q ss_pred hhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCCC-Ccc-CCCCcccccCCcCCCC
Q 044615 308 SQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNS-TAF-RDAPMLALQGNKRLCG 376 (571)
Q Consensus 308 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~-~~~~~l~l~~n~~~c~ 376 (571)
..|.++++|++|+|++|+|++..|..|..+++|+.||+++|++++.+|.. ..+ .++..+++.+|++.|.
T Consensus 512 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 512 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 89999999999999999999888889999999999999999999988864 233 5788899999999884
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.2e-34 Score=307.26 Aligned_cols=306 Identities=21% Similarity=0.195 Sum_probs=261.4
Q ss_pred CCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccC
Q 044615 46 RAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGN 119 (571)
Q Consensus 46 ~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 119 (571)
.+.+++.+++++|.+. +..+++|+.|+|++|.+++ ..|..|+++++|++|+|++|.+++..|..|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-------IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-------ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-------CChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 4678899999999877 5678999999999999987 55678999999999999999999888888999
Q ss_pred CCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEE
Q 044615 120 LTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVL 199 (571)
Q Consensus 120 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L 199 (571)
+++|++|+|++|.++...+..|+++++|++|+|++|.+.+..|..|..+++|++|++++|.+++. + +..++. |+.|
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~-L~~L 197 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPS-LFHA 197 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTT-CSEE
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhh-hhhh
Confidence 99999999999999977777789999999999999999988888899999999999999999854 3 444554 9999
Q ss_pred EccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCc
Q 044615 200 YLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFS 279 (571)
Q Consensus 200 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 279 (571)
++++|.+++ +...++|+.|++++|.+....+. ..++|+.|++++|.+++ +..+..+++|+.|++++|.++
T Consensus 198 ~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 198 NVSYNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp ECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred hcccCcccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC
Confidence 999998874 23456899999999988754332 23689999999999876 367889999999999999999
Q ss_pred cCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCCCCc
Q 044615 280 QKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTA 359 (571)
Q Consensus 280 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~ 359 (571)
+..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++.. ...
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~ 343 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LST 343 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCT
T ss_pred CCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhh
Confidence 8888899999999999999999987 5667778899999999999998 56777888899999999999998774 346
Q ss_pred cCCCCcccccCCcCCCC
Q 044615 360 FRDAPMLALQGNKRLCG 376 (571)
Q Consensus 360 ~~~~~~l~l~~n~~~c~ 376 (571)
+..+..+++.+|++.|.
T Consensus 344 ~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TCCCSEEECCSSCEEHH
T ss_pred cCCCCEEEeeCCCCCCh
Confidence 77888899999998874
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.9e-33 Score=280.94 Aligned_cols=305 Identities=25% Similarity=0.315 Sum_probs=264.7
Q ss_pred chhhcCCCCCCEEEccCCccc----cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCccccccc
Q 044615 41 YKELVRAVQARDTSISFDELH----EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLA 116 (571)
Q Consensus 41 ~~~l~~~~~l~~l~l~~n~l~----~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~ 116 (571)
...+..+.+++.|+++++.+. +..+++|++|++++|.+++ +|. +.++++|++|++++|.++. + ..
T Consensus 37 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~--------~~~-~~~l~~L~~L~L~~n~i~~-~-~~ 105 (347)
T 4fmz_A 37 VVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--------ISP-LSNLVKLTNLYIGTNKITD-I-SA 105 (347)
T ss_dssp EECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG-GTTCTTCCEEECCSSCCCC-C-GG
T ss_pred cccchhcccccEEEEeCCccccchhhhhcCCccEEEccCCcccc--------chh-hhcCCcCCEEEccCCcccC-c-hH
Confidence 455678899999999999887 6788999999999999886 444 8899999999999999985 3 36
Q ss_pred ccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCC
Q 044615 117 LGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSL 196 (571)
Q Consensus 117 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L 196 (571)
+..+++|++|++++|.+++..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..++. |
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~-L 179 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTD-L 179 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTT-C
T ss_pred HcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCC-C
Confidence 9999999999999999986543 8999999999999997665444 48999999999999999985433 677775 9
Q ss_pred cEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCc
Q 044615 197 KVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNN 276 (571)
Q Consensus 197 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 276 (571)
+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|
T Consensus 180 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 180 YSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253 (347)
T ss_dssp SEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC
Confidence 999999999985443 7889999999999999986544 8899999999999999986544 889999999999999
Q ss_pred cCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCC
Q 044615 277 QFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPN 356 (571)
Q Consensus 277 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~ 356 (571)
.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..|
T Consensus 254 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~- 328 (347)
T 4fmz_A 254 QISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP- 328 (347)
T ss_dssp CCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-
T ss_pred ccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-
Confidence 99864 4688999999999999999874 458899999999999999999999999999999999999999999877
Q ss_pred CCccCCCCcccccCCcC
Q 044615 357 STAFRDAPMLALQGNKR 373 (571)
Q Consensus 357 ~~~~~~~~~l~l~~n~~ 373 (571)
...++.+..+++.+|+.
T Consensus 329 ~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 329 LASLSKMDSADFANQVI 345 (347)
T ss_dssp GGGCTTCSEESSSCC--
T ss_pred hhhhhccceeehhhhcc
Confidence 66788899999998863
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.1e-34 Score=305.43 Aligned_cols=326 Identities=19% Similarity=0.212 Sum_probs=261.5
Q ss_pred CCCCCchhhcCCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcC
Q 044615 36 GLGDDYKELVRAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENIL 109 (571)
Q Consensus 36 ~~~~~~~~l~~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i 109 (571)
++..+|..+. .+++.|++++|.+. +..+++|++|++++|++++ ..|..|+++++|++|+|++|.+
T Consensus 16 ~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-------~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 16 SFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-------IEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-------ECTTTTTTCTTCCEEECTTSCC
T ss_pred ccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-------cChhhccccccCCEEECCCCcc
Confidence 4455676654 78999999999887 6789999999999999997 6678899999999999999999
Q ss_pred cccccccccCCCCCCEEEcccCcCccc-ccccccCCCCCCeeecccCcCcccC-CccccCCCCCCEEEccCCCCCccCCh
Q 044615 110 NGSIPLALGNLTNLVVLDLSTNKLSGS-IPLSFANLTSLSILYLYENSLCDSI-PKEIGNMNSLSILDLSSNKLNGSIPL 187 (571)
Q Consensus 110 ~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~ 187 (571)
++..|..|+++++|++|++++|.+++. .|..++++++|++|++++|.+.+.+ +..+..+++|++|++++|++.+..|.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 988888899999999999999999863 5678999999999999999844444 46899999999999999999988999
Q ss_pred hhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCC--Chh----------------------------
Q 044615 188 SLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQL--SPE---------------------------- 237 (571)
Q Consensus 188 ~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~---------------------------- 237 (571)
.+..+.+ |+.|+++.|.+....+..+..+++|++|++++|.+.+.. +..
T Consensus 167 ~l~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 167 SLKSIRD-IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp TTTTCSE-EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred hhhcccc-CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence 9998886 999999999986433333456889999999999887631 000
Q ss_pred ------------------------------------------------------------hhCCCCCCEEEcccCccccc
Q 044615 238 ------------------------------------------------------------LGSLIQLEYLDLSANTFHKS 257 (571)
Q Consensus 238 ------------------------------------------------------------~~~l~~L~~L~L~~n~l~~~ 257 (571)
+...++|+.|++++|.+. .
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ 324 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-L 324 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-C
T ss_pred HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-c
Confidence 011134555556666554 3
Q ss_pred cchhh-ccCCCCCEEEcCCccCccCcch---hhhcccCCCEEEccCCcCCcccc--hhccCCCCCCEEEccCCcCccccc
Q 044615 258 IPESL-SNLVKLHYLNLSNNQFSQKIPN---KIEKLIHLSELDLSHNIFREEIP--SQICSMQSLEKLNLSHNNLSGSIP 331 (571)
Q Consensus 258 ~~~~l-~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~p 331 (571)
+|..+ ..+++|+.|++++|.+++..|. .+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|+++ .+|
T Consensus 325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 403 (549)
T 2z81_A 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP 403 (549)
T ss_dssp CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCC
T ss_pred CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCC
Confidence 44444 5799999999999999987653 36788999999999999987543 56899999999999999999 678
Q ss_pred cccccCCCCCEEECcCCcCcccCCCC------------------CccCCCCcccccCCcC
Q 044615 332 RCFEEMHWLSCIDISYNALQGLIPNS------------------TAFRDAPMLALQGNKR 373 (571)
Q Consensus 332 ~~~~~l~~L~~L~ls~N~l~~~~~~~------------------~~~~~~~~l~l~~n~~ 373 (571)
..+..+++|+.|++++|.++...... ..++.+..+++++|..
T Consensus 404 ~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l 463 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL 463 (549)
T ss_dssp SCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred hhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCcc
Confidence 88888888999998888887543321 1345566667777754
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1e-34 Score=288.38 Aligned_cols=252 Identities=26% Similarity=0.397 Sum_probs=189.4
Q ss_pred CccceeecccccccCCCCCCCccccccccCCCCCCEEeccc-CcCcccccccccCCCCCCEEEcccCcCcccccccccCC
Q 044615 66 TFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSE-NILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANL 144 (571)
Q Consensus 66 ~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 144 (571)
..++.|+|++|.+++. ..+|..++++++|++|+|++ |.+.+.+|..|+++++|++|+|++|.+++.+|..|.++
T Consensus 50 ~~l~~L~L~~~~l~~~-----~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP-----YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSC-----EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCC-----cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 5799999999999851 14788999999999999995 99999999999999999999999999999999999999
Q ss_pred CCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEe
Q 044615 145 TSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLT 224 (571)
Q Consensus 145 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 224 (571)
++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..+..+.++|+.|++++|.+++..|..+..++ |+.|+
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 99999999999999899999999999999999999999889988888874488888888888776666666554 66666
Q ss_pred CccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCc
Q 044615 225 LNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFRE 304 (571)
Q Consensus 225 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 304 (571)
+++|.+.+..|..+..+++|+.|++++|.+++.+|. +..+++|+.|++++|.+++
T Consensus 204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------------------------~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-------------------------VGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-------------------------CCCCTTCCEEECCSSCCEE
T ss_pred CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-------------------------ccccCCCCEEECcCCcccC
Confidence 666665555555555555555555555555433332 3444555555555555555
Q ss_pred ccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCc
Q 044615 305 EIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNA 349 (571)
Q Consensus 305 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~ 349 (571)
.+|..+..+++|+.|+|++|++++.+|.. ..+++|+.+++++|+
T Consensus 259 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 55555555555555555555555555554 455556666666665
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.4e-33 Score=299.77 Aligned_cols=311 Identities=23% Similarity=0.237 Sum_probs=253.8
Q ss_pred CCCCEEEccCCccc---cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCC
Q 044615 48 VQARDTSISFDELH---EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLV 124 (571)
Q Consensus 48 ~~l~~l~l~~n~l~---~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 124 (571)
...+.+++++|+++ ....+.++.|+|++|.+++ ..|..|.++++|++|+|++|.+++..|..|+++++|+
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~-------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISE-------LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCC-------CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred CCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccc-------cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 34478999999888 2234789999999999997 5567899999999999999999988899999999999
Q ss_pred EEEcccCcCcccccccccCCCCCCeeecccCcCccc-CCccccCCCCCCEEEccCCCCCccCChhhhhccCCC--cEEEc
Q 044615 125 VLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDS-IPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSL--KVLYL 201 (571)
Q Consensus 125 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L--~~L~l 201 (571)
+|+|++|.++ .+|.. .+++|++|++++|.+.+. .|..|+++++|++|++++|++.+. .+..+.. | +.|++
T Consensus 104 ~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~-L~L~~L~L 176 (562)
T 3a79_B 104 YLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAH-LHLSCILL 176 (562)
T ss_dssp EEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTT-SCEEEEEE
T ss_pred EEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhh-ceeeEEEe
Confidence 9999999998 45555 899999999999999873 468999999999999999999853 3444443 5 99999
Q ss_pred cCCcc--cccCCccccCCC-------------------------------------------------------------
Q 044615 202 SSNHI--VGEIPLGHGMLS------------------------------------------------------------- 218 (571)
Q Consensus 202 ~~n~~--~~~~~~~~~~l~------------------------------------------------------------- 218 (571)
++|.+ ++..|..+..+.
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 99998 655555544432
Q ss_pred --------------------CCcEEeCccCcCcCCCChhh----------------------------------------
Q 044615 219 --------------------SLIQLTLNNNELSGQLSPEL---------------------------------------- 238 (571)
Q Consensus 219 --------------------~L~~L~l~~n~l~~~~~~~~---------------------------------------- 238 (571)
+|++|++++|.+.+.+|..+
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence 67788888888877666544
Q ss_pred -------------hCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccC--cchhhhcccCCCEEEccCCcCC
Q 044615 239 -------------GSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQK--IPNKIEKLIHLSELDLSHNIFR 303 (571)
Q Consensus 239 -------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~ 303 (571)
..+++|+.|++++|.+++..|..+.++++|+.|++++|++++. .|..+..+++|+.|++++|.+.
T Consensus 337 ~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp EEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred EccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 5678888999999988887888888899999999999988863 3466788889999999999988
Q ss_pred cccc-hhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCCCCccCCCCcccccCCcCC
Q 044615 304 EEIP-SQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRL 374 (571)
Q Consensus 304 ~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~l~l~~n~~~ 374 (571)
+.+| ..+..+++|+.|++++|++++..|..+. +.|+.|++++|+++..++....++.+..+++.+|...
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC
Confidence 7444 4578888999999999998877776654 6899999999999877666667788888999988744
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.6e-32 Score=284.93 Aligned_cols=298 Identities=32% Similarity=0.407 Sum_probs=174.0
Q ss_pred hhcCCCCCCEEEccCCccc----cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCccccccccc
Q 044615 43 ELVRAVQARDTSISFDELH----EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALG 118 (571)
Q Consensus 43 ~l~~~~~l~~l~l~~n~l~----~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 118 (571)
.+..+.+|++|++++|.+. +..+++|+.|++++|.+++ ++. ++++++|++|++++|.+++..+ +.
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~--------~~~-~~~l~~L~~L~L~~n~l~~~~~--~~ 131 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--------ITP-LANLTNLTGLTLFNNQITDIDP--LK 131 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--------CGG-GTTCTTCCEEECCSSCCCCCGG--GT
T ss_pred chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCcccc--------Chh-hcCCCCCCEEECCCCCCCCChH--Hc
Confidence 3666777777777777666 5667777777777777765 233 6777777777777777765432 67
Q ss_pred CCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcE
Q 044615 119 NLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKV 198 (571)
Q Consensus 119 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~ 198 (571)
.+++|++|++++|.+.+. + .+..+++|++|+++ |.+.+. ..+..+++|++|++++|.+.+ + ..+..+++ |+.
T Consensus 132 ~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~-L~~ 203 (466)
T 1o6v_A 132 NLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSD-I-SVLAKLTN-LES 203 (466)
T ss_dssp TCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTT-CSE
T ss_pred CCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCC-C-hhhccCCC-CCE
Confidence 777777777777776643 2 34555555555553 222221 125566666666666666653 2 23445554 666
Q ss_pred EEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccC
Q 044615 199 LYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQF 278 (571)
Q Consensus 199 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 278 (571)
|++++|.+.+..| ++.+++|+.|++++|.+.+. +.+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 204 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 204 LIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277 (466)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCC
T ss_pred EEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCcc
Confidence 6666666654433 44556666666666666542 345556666666666666654333 55566666666666666
Q ss_pred ccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCCCC
Q 044615 279 SQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNST 358 (571)
Q Consensus 279 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~ 358 (571)
++..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|++++..| +..++.|+.|++++|++++. +...
T Consensus 278 ~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~ 350 (466)
T 1o6v_A 278 SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLA 350 (466)
T ss_dssp CCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGT
T ss_pred Ccccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhc
Confidence 54333 5555566666666666554333 4555666666666666655443 45555566666666655554 2333
Q ss_pred ccCCCCcccccCCc
Q 044615 359 AFRDAPMLALQGNK 372 (571)
Q Consensus 359 ~~~~~~~l~l~~n~ 372 (571)
.+..+..+++.+|+
T Consensus 351 ~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 351 NLTNINWLSAGHNQ 364 (466)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCCCCCEEeCCCCc
Confidence 44455555555554
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.8e-32 Score=273.07 Aligned_cols=283 Identities=24% Similarity=0.351 Sum_probs=246.7
Q ss_pred hhhcCCCCCCEEEccCCccc----cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccc
Q 044615 42 KELVRAVQARDTSISFDELH----EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLAL 117 (571)
Q Consensus 42 ~~l~~~~~l~~l~l~~n~l~----~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~ 117 (571)
+.+..+.+|++|++++|.+. +..+++|++|++++|.++. +| .+.++++|++|++++|.+.+. +. +
T Consensus 60 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~--------~~-~~~~l~~L~~L~l~~n~i~~~-~~-~ 128 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD--------IS-ALQNLTNLRELYLNEDNISDI-SP-L 128 (347)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--------CG-GGTTCTTCSEEECTTSCCCCC-GG-G
T ss_pred hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC--------ch-HHcCCCcCCEEECcCCcccCc-hh-h
Confidence 34888999999999999887 7789999999999999886 33 589999999999999999854 33 8
Q ss_pred cCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCc
Q 044615 118 GNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLK 197 (571)
Q Consensus 118 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~ 197 (571)
..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++. +..++. |+
T Consensus 129 ~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~-L~ 202 (347)
T 4fmz_A 129 ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTS-LH 202 (347)
T ss_dssp TTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCTT-CC
T ss_pred ccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCCc-cc
Confidence 999999999999997654444 48999999999999999976433 8899999999999999985 443 667775 99
Q ss_pred EEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCcc
Q 044615 198 VLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQ 277 (571)
Q Consensus 198 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 277 (571)
.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|.
T Consensus 203 ~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~ 276 (347)
T 4fmz_A 203 YFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQ 276 (347)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred eeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCc
Confidence 99999999986544 7889999999999999996544 89999999999999999864 568999999999999999
Q ss_pred CccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCc
Q 044615 278 FSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQ 351 (571)
Q Consensus 278 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 351 (571)
+++. ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..| +..++.|+.|++++|+++
T Consensus 277 l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 277 ISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9865 458899999999999999999999999999999999999999998776 889999999999999986
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-32 Score=281.96 Aligned_cols=312 Identities=23% Similarity=0.172 Sum_probs=263.2
Q ss_pred CCCchh-hcCCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCc
Q 044615 38 GDDYKE-LVRAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILN 110 (571)
Q Consensus 38 ~~~~~~-l~~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~ 110 (571)
..+|.. +..+++|+.|++++|.+. +..+++|+.|+|++|.+++ ..|..++++++|++|+|++|.++
T Consensus 58 ~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~l~~L~~L~L~~n~l~ 130 (390)
T 3o6n_A 58 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-------LPPHVFQNVPLLTVLVLERNDLS 130 (390)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCEEECCSSCCC
T ss_pred hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-------CCHHHhcCCCCCCEEECCCCccC
Confidence 344544 688999999999999887 6789999999999999987 55777899999999999999999
Q ss_pred ccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhh
Q 044615 111 GSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLA 190 (571)
Q Consensus 111 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 190 (571)
...+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+. .+..+++|+.|++++|.+.+. +
T Consensus 131 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-~---- 202 (390)
T 3o6n_A 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-A---- 202 (390)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-E----
T ss_pred cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-C----
Confidence 65556679999999999999999988888999999999999999999864 367789999999999998742 1
Q ss_pred hccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCE
Q 044615 191 NLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHY 270 (571)
Q Consensus 191 ~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 270 (571)
.+.+|+.|++++|.+... |. ...++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|..+..+++|+.
T Consensus 203 -~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 203 -IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp -CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred -CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 123599999999999865 33 2357999999999999864 67899999999999999999988999999999999
Q ss_pred EEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcC
Q 044615 271 LNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNAL 350 (571)
Q Consensus 271 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 350 (571)
|++++|++++ +|..+..+++|+.|++++|++.+ +|..+..+++|+.|++++|+++... +..++.|+.|++++|++
T Consensus 277 L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 277 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp EECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCE
T ss_pred EECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCc
Confidence 9999999985 56667789999999999999985 6777888999999999999998653 67789999999999999
Q ss_pred cccCCCCCccCCCCcccccCCcCCCC
Q 044615 351 QGLIPNSTAFRDAPMLALQGNKRLCG 376 (571)
Q Consensus 351 ~~~~~~~~~~~~~~~l~l~~n~~~c~ 376 (571)
++.... ..+..+....+.+++..|.
T Consensus 352 ~~~~~~-~~~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 352 DCNSLR-ALFRNVARPAVDDADQHCK 376 (390)
T ss_dssp EHHHHH-HHTTTCCTTTBCCCCSCCC
T ss_pred cchhHH-HHHHHHHhhcccccCceec
Confidence 875322 2334444455566666664
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-32 Score=298.13 Aligned_cols=312 Identities=23% Similarity=0.159 Sum_probs=266.4
Q ss_pred CCch-hhcCCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcc
Q 044615 39 DDYK-ELVRAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNG 111 (571)
Q Consensus 39 ~~~~-~l~~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~ 111 (571)
.+|. .+..+++|+.|+|++|.+. +..++.|+.|+|++|.+++ ..|..|+++++|++|+|++|.+++
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~l~~L~~L~L~~n~l~~ 137 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-------LPPHVFQNVPLLTVLVLERNDLSS 137 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-------CCHHHHcCCCCCCEEEeeCCCCCC
Confidence 3444 4678999999999999887 7789999999999999998 567778999999999999999997
Q ss_pred cccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhh
Q 044615 112 SIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLAN 191 (571)
Q Consensus 112 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 191 (571)
..+..|+++++|++|+|++|.+++..|..|+++++|++|++++|.+.+. .+..+++|+.|++++|.+.+. ..
T Consensus 138 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~ 209 (597)
T 3oja_B 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AI 209 (597)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----EC
T ss_pred CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cC
Confidence 6666789999999999999999999999999999999999999999864 256789999999999998852 12
Q ss_pred ccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEE
Q 044615 192 LTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYL 271 (571)
Q Consensus 192 l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 271 (571)
+.+|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..+++|+.|+|++|.+.+..|..+..+++|+.|
T Consensus 210 -~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 210 -PIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp -CTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred -CchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 235999999999998544332 3689999999999996 4789999999999999999999999999999999999
Q ss_pred EcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCc
Q 044615 272 NLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQ 351 (571)
Q Consensus 272 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 351 (571)
+|++|.+++ +|..+..+++|+.|+|++|.+.+ +|..+..+++|+.|+|++|++++.. +..++.|+.|++++|+++
T Consensus 284 ~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 284 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp ECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred ECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCC
Confidence 999999986 56677789999999999999985 7778899999999999999998653 667889999999999998
Q ss_pred ccCCCCCccCCCCcccccCCcCCCCC
Q 044615 352 GLIPNSTAFRDAPMLALQGNKRLCGD 377 (571)
Q Consensus 352 ~~~~~~~~~~~~~~l~l~~n~~~c~~ 377 (571)
+.... ..+.......+.++...|+.
T Consensus 359 ~~~~~-~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 359 CNSLR-ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp HHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred ChhHH-HHHHHHhhhccccccccCCc
Confidence 76432 23444555556677777764
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.3e-32 Score=271.32 Aligned_cols=247 Identities=25% Similarity=0.275 Sum_probs=117.1
Q ss_pred CCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEc
Q 044615 97 KSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDL 176 (571)
Q Consensus 97 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 176 (571)
++|++|+|++|.+++..+..|+++++|++|+|++|.+++..|..|+++++|++|++++|.+. .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 34455555555554444444455555555555555554444444555555555555555543 2333222 44555555
Q ss_pred cCCCCCccCChhhhhccCCCcEEEccCCcccc--cCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCcc
Q 044615 177 SSNKLNGSIPLSLANLTNSLKVLYLSSNHIVG--EIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTF 254 (571)
Q Consensus 177 ~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (571)
++|++.+..+..+..++. |+.|++++|.+.. ..+..+..+++|+.|++++|.+.. +|..+. ++|+.|++++|.+
T Consensus 129 ~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQ-MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CSSCCCBBCHHHHTTCTT-CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred CCCcccccCHhHhcCCcc-ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence 555554333333444443 5555555554432 334444445555555555555443 222221 4455555555555
Q ss_pred ccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCcccccccc
Q 044615 255 HKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCF 334 (571)
Q Consensus 255 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 334 (571)
++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..|
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 4444445555555555555555555444444455555555555555554 244445555555555555555554444444
Q ss_pred ccC------CCCCEEECcCCcCc
Q 044615 335 EEM------HWLSCIDISYNALQ 351 (571)
Q Consensus 335 ~~l------~~L~~L~ls~N~l~ 351 (571)
+.. ..++.+++++|++.
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCcccccccccccceEeecCccc
Confidence 322 34455555555543
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.1e-32 Score=274.48 Aligned_cols=246 Identities=24% Similarity=0.287 Sum_probs=121.7
Q ss_pred CCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEc
Q 044615 97 KSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDL 176 (571)
Q Consensus 97 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 176 (571)
++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|++++|.+. .+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 34555555555555444445555555555555555555444555555555555555555554 2333222 45555555
Q ss_pred cCCCCCccCChhhhhccCCCcEEEccCCcccc--cCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCcc
Q 044615 177 SSNKLNGSIPLSLANLTNSLKVLYLSSNHIVG--EIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTF 254 (571)
Q Consensus 177 ~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (571)
++|++.+..+..+..+++ |+.|++++|.++. ..+..+..+ +|+.|++++|.+++ +|..+. ++|+.|++++|.+
T Consensus 131 ~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp CSSCCCCCCSGGGSSCSS-CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred CCCccCccCHhHhCCCcc-CCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence 555554333333444443 5555555555532 334444444 55555555555553 222221 4555555555555
Q ss_pred ccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCcccccccc
Q 044615 255 HKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCF 334 (571)
Q Consensus 255 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 334 (571)
++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 5444445555555555555555555444445555555555555555554 344445555555555555555554444444
Q ss_pred ccC------CCCCEEECcCCcCc
Q 044615 335 EEM------HWLSCIDISYNALQ 351 (571)
Q Consensus 335 ~~l------~~L~~L~ls~N~l~ 351 (571)
... ..|+.|++++|++.
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSC
T ss_pred cccccccccccccceEeecCccc
Confidence 332 34555555555554
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.6e-31 Score=278.91 Aligned_cols=323 Identities=20% Similarity=0.171 Sum_probs=259.4
Q ss_pred hhhhcCCchhHHHHHhhccCCCCCchhhcCCCCCCEEEccCCccc----cCCCCccceeecccccccCCCCCCCcccccc
Q 044615 17 LAILGAPMEEEDLIEKILDGLGDDYKELVRAVQARDTSISFDELH----EKLLTFEATAHFSVLAFTGQDWPLYSSIPDE 92 (571)
Q Consensus 17 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~n~l~----~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~ 92 (571)
......+.................+.+++++++|+.|++++|.+. +..++.|+.|++++|.+++ +|
T Consensus 11 ~~~~~pd~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~--------~~-- 80 (457)
T 3bz5_A 11 FNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT--------LD-- 80 (457)
T ss_dssp HHHHCSSHHHHHHHHHHTTCCTTSEEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC--------CC--
T ss_pred cccccCcHHHHHHHHHhcCcCcccccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe--------Ec--
Confidence 334444443344444344444556778999999999999999887 6788999999999999987 34
Q ss_pred ccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCC
Q 044615 93 IGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLS 172 (571)
Q Consensus 93 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 172 (571)
++.+++|++|++++|.+++. + ++.+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++.+++|+
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~ 151 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLT 151 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCC
T ss_pred cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCC
Confidence 88899999999999999864 3 88999999999999999864 4 89999999999999999874 3 88999999
Q ss_pred EEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccC
Q 044615 173 ILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSAN 252 (571)
Q Consensus 173 ~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 252 (571)
+|++++|+..+.+ .+..++. |+.|++++|.+++ +| ++.+++|+.|++++|.+++. .++.+++|+.|++++|
T Consensus 152 ~L~l~~n~~~~~~--~~~~l~~-L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 152 ELDCHLNKKITKL--DVTPQTQ-LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp EEECTTCSCCCCC--CCTTCTT-CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSS
T ss_pred EEECCCCCccccc--ccccCCc-CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCC
Confidence 9999999665555 3666665 9999999999986 44 78889999999999999975 3888999999999999
Q ss_pred ccccccchhhccCCCCCEEEcCCccCccCcchhhhccc-------CCCEEEccCCcCCcccchhccCCCCCCEEEccCCc
Q 044615 253 TFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLI-------HLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNN 325 (571)
Q Consensus 253 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 325 (571)
.+++ +| +..+++|+.|++++|++++..+..+..+. +|+.|++++|.+.+.+| +..+++|+.|++++|.
T Consensus 223 ~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 223 KLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNT 297 (457)
T ss_dssp CCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCT
T ss_pred cccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCc
Confidence 9987 45 88899999999999999987655544443 45666666666666665 5678999999999998
Q ss_pred Cccccccc--------cccCCCCCEEECcCCcCcccCCCCCccCCCCcccccCCcCC
Q 044615 326 LSGSIPRC--------FEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRL 374 (571)
Q Consensus 326 l~~~~p~~--------~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~l~l~~n~~~ 374 (571)
..+.+|.. +..++.|+.|++++|++++. + ...++.+..+++.+|+..
T Consensus 298 ~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~-l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 298 QLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D-VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C-CTTCTTCSEEECCSSCCC
T ss_pred ccceeccCCCcceEechhhcccCCEEECCCCccccc-c-cccCCcCcEEECCCCCCC
Confidence 77766642 45567899999999999985 3 566778888889888743
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.9e-31 Score=267.29 Aligned_cols=287 Identities=23% Similarity=0.259 Sum_probs=234.2
Q ss_pred CCCCEEEccCCccc---cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCC
Q 044615 48 VQARDTSISFDELH---EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLV 124 (571)
Q Consensus 48 ~~l~~l~l~~n~l~---~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 124 (571)
.+++.++++.+.+. ....+.++.|++++|++++ ..+..|+++++|++|+|++|.+++..|..|+.+++|+
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-------IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-------BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCE-------eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 36888999888776 2234678899999998886 4455788899999999999999887788899999999
Q ss_pred EEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCc--cCChhhhhccCCCcEEEcc
Q 044615 125 VLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNG--SIPLSLANLTNSLKVLYLS 202 (571)
Q Consensus 125 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~~L~~L~l~ 202 (571)
+|++++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++ |+.|+++
T Consensus 104 ~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~-L~~L~l~ 179 (330)
T 1xku_A 104 RLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK-LSYIRIA 179 (330)
T ss_dssp EEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT-CCEEECC
T ss_pred EEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC-cCEEECC
Confidence 9999999988 4554443 789999999999987777778899999999999998863 56677777776 9999999
Q ss_pred CCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCc
Q 044615 203 SNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKI 282 (571)
Q Consensus 203 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 282 (571)
+|.++. +|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++ .+
T Consensus 180 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 180 DTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp SSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred CCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 999874 454433 78999999999999888888999999999999999998877778889999999999999988 67
Q ss_pred chhhhcccCCCEEEccCCcCCcccchhccCC------CCCCEEEccCCcCcc--ccccccccCCCCCEEECcCCc
Q 044615 283 PNKIEKLIHLSELDLSHNIFREEIPSQICSM------QSLEKLNLSHNNLSG--SIPRCFEEMHWLSCIDISYNA 349 (571)
Q Consensus 283 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~ls~N~ 349 (571)
|..+..+++|+.|++++|.+++..+..|+.. +.|+.|++++|++.. ..|..|..+..++.+++++|+
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 7788888999999999999988777766543 778899999998864 567788888889999998874
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5e-31 Score=276.99 Aligned_cols=298 Identities=29% Similarity=0.398 Sum_probs=257.9
Q ss_pred cCCCCCCEEEccCCccc----cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCC
Q 044615 45 VRAVQARDTSISFDELH----EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNL 120 (571)
Q Consensus 45 ~~~~~l~~l~l~~n~l~----~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 120 (571)
..+.+++.|+++.+.+. +..+++|++|++++|.+++ +|. +.++++|++|++++|.+.+..+ ++++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~--------~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l 111 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD--------ITP-LKNLTKLVDILMNNNQIADITP--LANL 111 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG-GTTCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCC--------chh-hhccccCCEEECCCCccccChh--hcCC
Confidence 44678999999999887 6778999999999999986 344 8999999999999999986554 9999
Q ss_pred CCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEE
Q 044615 121 TNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLY 200 (571)
Q Consensus 121 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~ 200 (571)
++|++|++++|.+++..+ +.++++|++|++++|.+.+ ++ .+..+++|++|+++ |.+.+. + .+..++. |+.|+
T Consensus 112 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~-L~~L~ 183 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTT-LERLD 183 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTT-CCEEE
T ss_pred CCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc-h-hhccCCC-CCEEE
Confidence 999999999999986543 8999999999999999975 34 58999999999997 455533 2 3777776 99999
Q ss_pred ccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCcc
Q 044615 201 LSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQ 280 (571)
Q Consensus 201 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 280 (571)
+++|.+.+. ..+..+++|+.|++++|.+.+..+ ++.+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++
T Consensus 184 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 257 (466)
T 1o6v_A 184 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN 257 (466)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc
Confidence 999999754 347889999999999999997655 78899999999999999764 468899999999999999987
Q ss_pred CcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCCCCcc
Q 044615 281 KIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTAF 360 (571)
Q Consensus 281 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~ 360 (571)
..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..| ...+
T Consensus 258 ~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l 330 (466)
T 1o6v_A 258 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSL 330 (466)
T ss_dssp CGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGC
T ss_pred chh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccC
Confidence 655 8899999999999999987554 8899999999999999997655 8899999999999999998876 5677
Q ss_pred CCCCcccccCCcCC
Q 044615 361 RDAPMLALQGNKRL 374 (571)
Q Consensus 361 ~~~~~l~l~~n~~~ 374 (571)
..+..+++.+|+..
T Consensus 331 ~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 331 TKLQRLFFYNNKVS 344 (466)
T ss_dssp TTCCEEECCSSCCC
T ss_pred ccCCEeECCCCccC
Confidence 88999999998754
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.8e-31 Score=267.58 Aligned_cols=286 Identities=21% Similarity=0.241 Sum_probs=238.8
Q ss_pred CCCCEEEccCCccc---cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCC
Q 044615 48 VQARDTSISFDELH---EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLV 124 (571)
Q Consensus 48 ~~l~~l~l~~n~l~---~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 124 (571)
.+++.++++.+.+. ....+.++.|++++|.+++ ..|..|.++++|++|+|++|.+++..|..|+++++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE-------LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE-------ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc-------cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 36899999988877 2234689999999999886 4566889999999999999999988888999999999
Q ss_pred EEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCc--cCChhhhhccCCCcEEEcc
Q 044615 125 VLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNG--SIPLSLANLTNSLKVLYLS 202 (571)
Q Consensus 125 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~~L~~L~l~ 202 (571)
+|++++|.++ .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.++. ..|..+..+ +|+.|+++
T Consensus 106 ~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~ 180 (332)
T 2ft3_A 106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRIS 180 (332)
T ss_dssp EEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCC
T ss_pred EEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECc
Confidence 9999999998 4555444 789999999999987766778999999999999999863 556666666 49999999
Q ss_pred CCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCc
Q 044615 203 SNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKI 282 (571)
Q Consensus 203 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 282 (571)
+|.+++ +|..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ .+
T Consensus 181 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 181 EAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp SSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred CCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence 999985 554443 78999999999999888888999999999999999998887888999999999999999998 67
Q ss_pred chhhhcccCCCEEEccCCcCCcccchhccCC------CCCCEEEccCCcCc--cccccccccCCCCCEEECcCCc
Q 044615 283 PNKIEKLIHLSELDLSHNIFREEIPSQICSM------QSLEKLNLSHNNLS--GSIPRCFEEMHWLSCIDISYNA 349 (571)
Q Consensus 283 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~ls~N~ 349 (571)
|..+..+++|+.|++++|.+++..+..|+.. ++|+.|++++|++. +..|..|..++.|+.+++++|+
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 7788899999999999999988777777653 67899999999987 6778889999999999998874
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.8e-30 Score=270.96 Aligned_cols=282 Identities=19% Similarity=0.179 Sum_probs=239.3
Q ss_pred CCCchhhcCCCCCCEEEccCCccc---cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCccccc
Q 044615 38 GDDYKELVRAVQARDTSISFDELH---EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIP 114 (571)
Q Consensus 38 ~~~~~~l~~~~~l~~l~l~~n~l~---~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~ 114 (571)
...| .+..+++|++|++++|.+. ++.+++|++|++++|.+++ +| ++++++|++|++++|.+++ +|
T Consensus 55 ~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~--------~~--~~~l~~L~~L~L~~N~l~~-l~ 122 (457)
T 3bz5_A 55 TDMT-GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTN--------LD--VTPLTKLTYLNCDTNKLTK-LD 122 (457)
T ss_dssp CCCT-TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC--------CC--CTTCTTCCEEECCSSCCSC-CC
T ss_pred ccCh-hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCce--------ee--cCCCCcCCEEECCCCcCCe-ec
Confidence 3344 6899999999999999888 7889999999999999987 33 8899999999999999986 44
Q ss_pred ccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccC
Q 044615 115 LALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTN 194 (571)
Q Consensus 115 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 194 (571)
++.+++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|++|++++|++++ +| +..++.
T Consensus 123 --~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~ 192 (457)
T 3bz5_A 123 --VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKL 192 (457)
T ss_dssp --CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTT
T ss_pred --CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCC
Confidence 89999999999999999974 3889999999999999665555 48899999999999999996 55 667765
Q ss_pred CCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCC-------C
Q 044615 195 SLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLV-------K 267 (571)
Q Consensus 195 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-------~ 267 (571)
|+.|++++|.+++. .++.+++|+.|++++|++++ +| ++.+++|+.|++++|.+++..+..+.++. +
T Consensus 193 -L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~ 265 (457)
T 3bz5_A 193 -LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD 265 (457)
T ss_dssp -CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCC
T ss_pred -CCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCC
Confidence 99999999999865 47889999999999999998 45 88999999999999999987655555444 5
Q ss_pred CCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccch--------hccCCCCCCEEEccCCcCccccccccccCCC
Q 044615 268 LHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPS--------QICSMQSLEKLNLSHNNLSGSIPRCFEEMHW 339 (571)
Q Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 339 (571)
|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|. .+..+++|+.|++++|++++. + +..++.
T Consensus 266 L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~ 340 (457)
T 3bz5_A 266 LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTK 340 (457)
T ss_dssp CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTT
T ss_pred CCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCc
Confidence 5666677777666665 46789999999999987766654 255678999999999999985 3 889999
Q ss_pred CCEEECcCCcCccc
Q 044615 340 LSCIDISYNALQGL 353 (571)
Q Consensus 340 L~~L~ls~N~l~~~ 353 (571)
|+.|++++|++++.
T Consensus 341 L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 341 LKSLSCVNAHIQDF 354 (457)
T ss_dssp CSEEECCSSCCCBC
T ss_pred CcEEECCCCCCCCc
Confidence 99999999999974
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=2.3e-30 Score=282.85 Aligned_cols=307 Identities=22% Similarity=0.240 Sum_probs=245.3
Q ss_pred chhhcCCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCccccc
Q 044615 41 YKELVRAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIP 114 (571)
Q Consensus 41 ~~~l~~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~ 114 (571)
+.++.++++|++|+|++|.++ |..+++|++|+|++|++++ ..|..|.++++|++|+|++|.+++..+
T Consensus 69 ~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-------l~~~~f~~L~~L~~L~Ls~N~l~~l~~ 141 (635)
T 4g8a_A 69 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-------LALGAFSGLSSLQKLVAVETNLASLEN 141 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-------ECGGGGTTCTTCCEEECTTSCCCCSTT
T ss_pred HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-------CCHHHhcCCCCCCEEECCCCcCCCCCh
Confidence 357899999999999999887 7789999999999999986 334678999999999999999998777
Q ss_pred ccccCCCCCCEEEcccCcCccc-ccccccCCCCCCeeecccCcCcccCCccccCC-------------------------
Q 044615 115 LALGNLTNLVVLDLSTNKLSGS-IPLSFANLTSLSILYLYENSLCDSIPKEIGNM------------------------- 168 (571)
Q Consensus 115 ~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l------------------------- 168 (571)
..|+++++|++|+|++|.++.. .|..++.+++|++|++++|.+.+..|..+..+
T Consensus 142 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~ 221 (635)
T 4g8a_A 142 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 221 (635)
T ss_dssp CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc
Confidence 7899999999999999999764 57888999999999999998765433322111
Q ss_pred --------------------------------------------------------------------------------
Q 044615 169 -------------------------------------------------------------------------------- 168 (571)
Q Consensus 169 -------------------------------------------------------------------------------- 168 (571)
T Consensus 222 ~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 301 (635)
T 4g8a_A 222 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL 301 (635)
T ss_dssp TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT
T ss_pred cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhh
Confidence
Q ss_pred --------------------------CCCCEEEccCCCCCccCCh-------------------hhhhccCCCcEEEccC
Q 044615 169 --------------------------NSLSILDLSSNKLNGSIPL-------------------SLANLTNSLKVLYLSS 203 (571)
Q Consensus 169 --------------------------~~L~~L~L~~n~l~~~~p~-------------------~~~~l~~~L~~L~l~~ 203 (571)
..|+.|++.+|.+....+. ....++ +|+.|+++.
T Consensus 302 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~-~L~~L~ls~ 380 (635)
T 4g8a_A 302 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP-SLEFLDLSR 380 (635)
T ss_dssp TGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT-TCCEEECCS
T ss_pred hhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc-ccccchhhc
Confidence 1222333333322111000 011122 256666666
Q ss_pred Ccccc-------------------------------------------------c-CCccccCCCCCcEEeCccCcCcCC
Q 044615 204 NHIVG-------------------------------------------------E-IPLGHGMLSSLIQLTLNNNELSGQ 233 (571)
Q Consensus 204 n~~~~-------------------------------------------------~-~~~~~~~l~~L~~L~l~~n~l~~~ 233 (571)
|.+.. . .+..+..+++++.++++.|.+.+.
T Consensus 381 n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~ 460 (635)
T 4g8a_A 381 NGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 460 (635)
T ss_dssp SCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC
T ss_pred cccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccc
Confidence 55421 1 112345667788888899999988
Q ss_pred CChhhhCCCCCCEEEcccCccc-cccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccC
Q 044615 234 LSPELGSLIQLEYLDLSANTFH-KSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICS 312 (571)
Q Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 312 (571)
.+..+..++.|+.|++++|.+. ...|..+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..
T Consensus 461 ~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~ 540 (635)
T 4g8a_A 461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 540 (635)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTT
T ss_pred cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhC
Confidence 8889999999999999999754 457788999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEccCCcCccccccccccC-CCCCEEECcCCcCcccCC
Q 044615 313 MQSLEKLNLSHNNLSGSIPRCFEEM-HWLSCIDISYNALQGLIP 355 (571)
Q Consensus 313 l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~ls~N~l~~~~~ 355 (571)
+++|+.|+|++|+|++..|..|..+ ++|+.|++++|++++.+.
T Consensus 541 l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 541 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999999999999988 689999999999998654
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=264.15 Aligned_cols=275 Identities=19% Similarity=0.190 Sum_probs=210.6
Q ss_pred eeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCe
Q 044615 70 TAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSI 149 (571)
Q Consensus 70 ~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 149 (571)
..+.+.+.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++
T Consensus 35 ~c~~~~~~l~--------~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 35 ICKGSSGSLN--------SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EEECCSTTCS--------SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred EeeCCCCCcc--------ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3455555555 4666554 47888888888888666667888888888888888888777778888888888
Q ss_pred eecccCcCcccCCccccCCCCCCEEEccCCCCCccCCh--hhhhccCCCcEEEccCC-cccccCCccccCCCCCcEEeCc
Q 044615 150 LYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPL--SLANLTNSLKVLYLSSN-HIVGEIPLGHGMLSSLIQLTLN 226 (571)
Q Consensus 150 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~ 226 (571)
|++++|.+++..+..+..+++|++|++++|++. .+|. .+..+++ |+.|++++| .+....+..+..+++|+.|+++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTK-LQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTT-CCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCC-CcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 888888887654455788888888888888887 4444 5666665 888888888 4666667778888888888888
Q ss_pred cCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhh---cccCCCEEEccCCcCC
Q 044615 227 NNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIE---KLIHLSELDLSHNIFR 303 (571)
Q Consensus 227 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~ 303 (571)
+|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..+. ....++.++++++.+.
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred CCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence 8888887788888888888888888888654444456688888899988888765544332 3566888888888876
Q ss_pred c----ccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCC
Q 044615 304 E----EIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPN 356 (571)
Q Consensus 304 ~----~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~ 356 (571)
+ .+|..+..+++|+.|++++|+++...+..|..+++|+.|++++|++++.+|.
T Consensus 263 ~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 263 DESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 5 3677788899999999999999855444568899999999999999887653
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.3e-30 Score=256.60 Aligned_cols=232 Identities=25% Similarity=0.278 Sum_probs=141.6
Q ss_pred CCCCEEecccCcCcccccccccCCCCCCEEEcccCcCccc--ccccccCCCCCCeeecccCcCcccCCccccCCCCCCEE
Q 044615 97 KSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGS--IPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSIL 174 (571)
Q Consensus 97 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 174 (571)
++|++|+|++|.++...+..|.++++|++|+|++|.++.. .+..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence 3555555555555533333345555555555555555422 13344445555555555555432 33344444455555
Q ss_pred EccCCCCCccCChhhhhccCCCcEEEccCCcccccCC-ccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCc
Q 044615 175 DLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIP-LGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANT 253 (571)
Q Consensus 175 ~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (571)
++ ++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 107 ~l-------------------------~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 107 DF-------------------------QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp EC-------------------------TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred EC-------------------------CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 54 4444443322 345555666666666666665556666666777777777776
Q ss_pred ccc-ccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCcccccc
Q 044615 254 FHK-SIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPR 332 (571)
Q Consensus 254 l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 332 (571)
+.+ ..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|.
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 655 4566667777777777777777766666677777777777777777766666677777777777777777777777
Q ss_pred ccccCC-CCCEEECcCCcCcccC
Q 044615 333 CFEEMH-WLSCIDISYNALQGLI 354 (571)
Q Consensus 333 ~~~~l~-~L~~L~ls~N~l~~~~ 354 (571)
.+..++ .|+.|++++|++++..
T Consensus 242 ~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp SCCCCCTTCCEEECTTCCEECSG
T ss_pred HHHhhhccCCEEEccCCCeeccc
Confidence 777763 7777777777777654
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=8.1e-29 Score=259.11 Aligned_cols=235 Identities=24% Similarity=0.242 Sum_probs=123.5
Q ss_pred ccccccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCC
Q 044615 89 IPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNM 168 (571)
Q Consensus 89 ~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 168 (571)
+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+....+..|..+
T Consensus 69 iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 146 (452)
T 3zyi_A 69 VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146 (452)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSC
T ss_pred cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhccc
Confidence 444443 456666666666665555566666666666666666665555556666666666666666655444455556
Q ss_pred CCCCEEEccCCCCCccCChhhhhccCCCcEEEccC-CcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEE
Q 044615 169 NSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSS-NHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYL 247 (571)
Q Consensus 169 ~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 247 (571)
++|++|+|++|++....+..+..+++ |+.|++++ |.+....+..+..+++|+.|++++|.+++. |
T Consensus 147 ~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~------------ 212 (452)
T 3zyi_A 147 SKLRELWLRNNPIESIPSYAFNRVPS-LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P------------ 212 (452)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTT-CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C------------
T ss_pred CCCCEEECCCCCcceeCHhHHhcCCc-ccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c------------
Confidence 66666666666655333334444443 55555555 223222223344444555555555544432 1
Q ss_pred EcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCc
Q 044615 248 DLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLS 327 (571)
Q Consensus 248 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 327 (571)
.+..+++|+.|++++|.+++..|..|..+++|+.|++++|++.+..+..|..+++|+.|+|++|+++
T Consensus 213 -------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 213 -------------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp -------------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred -------------cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 2444445555555555555444445555555555555555555544445555555555555555555
Q ss_pred cccccccccCCCCCEEECcCCcCcc
Q 044615 328 GSIPRCFEEMHWLSCIDISYNALQG 352 (571)
Q Consensus 328 ~~~p~~~~~l~~L~~L~ls~N~l~~ 352 (571)
+..+..|..+++|+.|++++|++.+
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ccChHHhccccCCCEEEccCCCcCC
Confidence 4444445555555555555555443
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.6e-29 Score=254.14 Aligned_cols=277 Identities=20% Similarity=0.202 Sum_probs=237.1
Q ss_pred CCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEE
Q 044615 95 NMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSIL 174 (571)
Q Consensus 95 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 174 (571)
.++.....+++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 4556667899999998 5676654 589999999999998777789999999999999999998888899999999999
Q ss_pred EccCCCCCccCChh-hhhccCCCcEEEccCCcccccCC-ccccCCCCCcEEeCccC-cCcCCCChhhhCCCCCCEEEccc
Q 044615 175 DLSSNKLNGSIPLS-LANLTNSLKVLYLSSNHIVGEIP-LGHGMLSSLIQLTLNNN-ELSGQLSPELGSLIQLEYLDLSA 251 (571)
Q Consensus 175 ~L~~n~l~~~~p~~-~~~l~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~ 251 (571)
++++|++++ +|.. +..+++ |++|++++|.++...+ ..+..+++|++|++++| .+....+..+..+++|+.|++++
T Consensus 106 ~Ls~n~l~~-~~~~~~~~l~~-L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 106 DLSYNYLSN-LSSSWFKPLSS-LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp ECCSSCCSS-CCHHHHTTCTT-CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred ECCCCcCCc-CCHhHhCCCcc-CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 999999995 5554 777775 9999999999986544 47889999999999999 57777778899999999999999
Q ss_pred CccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhc---cCCCCCCEEEccCCcCcc
Q 044615 252 NTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQI---CSMQSLEKLNLSHNNLSG 328 (571)
Q Consensus 252 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~ 328 (571)
|.+.+..|..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+ .....++.++|+++.+++
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 99999889999999999999999999975544455678999999999999988655444 346778999999999986
Q ss_pred ----ccccccccCCCCCEEECcCCcCcccCCCC-CccCCCCcccccCCcCCCC
Q 044615 329 ----SIPRCFEEMHWLSCIDISYNALQGLIPNS-TAFRDAPMLALQGNKRLCG 376 (571)
Q Consensus 329 ----~~p~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~~~~~~l~l~~n~~~c~ 376 (571)
.+|+.+..+++|+.|++++|+++..++.. ..++.+..+++.+|+..|.
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 46788999999999999999999766653 5678899999999988773
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9.6e-30 Score=252.07 Aligned_cols=244 Identities=22% Similarity=0.214 Sum_probs=170.0
Q ss_pred CEEEccCCccc---cCCCCccceeecccccccCCCCCCCccccc-cccCCCCCCEEecccCcCccc--ccccccCCCCCC
Q 044615 51 RDTSISFDELH---EKLLTFEATAHFSVLAFTGQDWPLYSSIPD-EIGNMKSLSDLQLSENILNGS--IPLALGNLTNLV 124 (571)
Q Consensus 51 ~~l~l~~n~l~---~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~-~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~ 124 (571)
+.++.+.+.++ ....+.++.|++++|.++. +|. .|.++++|++|+|++|.++.. .+..+..+++|+
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~--------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQS--------LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC--------CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCc--------cCHhHhhccccCCEEECCCCccCcccCcccccccccccC
Confidence 46788877766 3344689999999999885 454 478999999999999999843 367778899999
Q ss_pred EEEcccCcCcccccccccCCCCCCeeecccCcCcccCC-ccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccC
Q 044615 125 VLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIP-KEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSS 203 (571)
Q Consensus 125 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~ 203 (571)
+|+|++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++. |+.|++++
T Consensus 82 ~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~ 159 (306)
T 2z66_A 82 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAG 159 (306)
T ss_dssp EEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT-CCEEECTT
T ss_pred EEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcC-CCEEECCC
Confidence 9999999998 567779999999999999999986554 57888899999999998888666666666664 77777777
Q ss_pred Ccccc-cCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCc
Q 044615 204 NHIVG-EIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKI 282 (571)
Q Consensus 204 n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 282 (571)
|.+.+ ..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+ ++..
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l------------------------~~~~ 215 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF------------------------FSLD 215 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC------------------------SBCC
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc------------------------CccC
Confidence 77664 3455555555555555555555544444444455555555555544 4444
Q ss_pred chhhhcccCCCEEEccCCcCCcccchhccCCC-CCCEEEccCCcCcc
Q 044615 283 PNKIEKLIHLSELDLSHNIFREEIPSQICSMQ-SLEKLNLSHNNLSG 328 (571)
Q Consensus 283 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~ 328 (571)
+..+..+++|+.|++++|.+.+..|..+..++ +|+.|+|++|++++
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 44444555555555555555555555555553 56666666666554
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=7.2e-29 Score=247.76 Aligned_cols=237 Identities=20% Similarity=0.230 Sum_probs=195.6
Q ss_pred CCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEE
Q 044615 95 NMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSIL 174 (571)
Q Consensus 95 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 174 (571)
..++++.|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..++++++|++|+|++|.+. .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3477888888888887 67777888888888888888888 77888888888888888888887 678788888888888
Q ss_pred EccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCcc
Q 044615 175 DLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTF 254 (571)
Q Consensus 175 ~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (571)
++++|++.+.+|..+... ..+..+..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+
T Consensus 156 ~L~~n~~~~~~p~~~~~~----------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST----------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEEETTCCCCCSCSEEE----------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred ECCCCCCccccChhHhhc----------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence 888887777777654321 11223456788888888888888 6777888889999999999988
Q ss_pred ccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCcccccccc
Q 044615 255 HKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCF 334 (571)
Q Consensus 255 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 334 (571)
++ +|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|+.+
T Consensus 219 ~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 219 SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred Cc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 75 56678888999999999998888888888899999999999998888889889999999999999999999999999
Q ss_pred ccCCCCCEEECcCCcCcc
Q 044615 335 EEMHWLSCIDISYNALQG 352 (571)
Q Consensus 335 ~~l~~L~~L~ls~N~l~~ 352 (571)
..++.|+.+++..|.+..
T Consensus 298 ~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp GGSCTTCEEECCGGGSCC
T ss_pred hhccCceEEeCCHHHHHH
Confidence 999999999988776653
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.2e-29 Score=249.45 Aligned_cols=226 Identities=23% Similarity=0.320 Sum_probs=158.8
Q ss_pred CCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccC
Q 044615 64 LLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFAN 143 (571)
Q Consensus 64 ~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 143 (571)
....++.|+|++|.++. +|..++++++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..+++
T Consensus 79 ~~~~l~~L~L~~n~l~~--------lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~ 148 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ--------FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS 148 (328)
T ss_dssp TSTTCCEEEEESSCCSS--------CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG
T ss_pred cccceeEEEccCCCchh--------cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc
Confidence 45789999999999874 7888999999999999999998 88999999999999999999998 77889999
Q ss_pred CCCCCeeecccCcCcccCCccccC---------CCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccc
Q 044615 144 LTSLSILYLYENSLCDSIPKEIGN---------MNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGH 214 (571)
Q Consensus 144 l~~L~~L~L~~n~l~~~~~~~l~~---------l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~ 214 (571)
+++|++|++++|++.+.+|..+.. +++|++|++++|+++ .+|..+..+++ |+.|++++|.+++ +|
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~-L~~L~L~~N~l~~-l~--- 222 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN-LKSLKIRNSPLSA-LG--- 222 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTT-CCEEEEESSCCCC-CC---
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCC-CCEEEccCCCCCc-Cc---
Confidence 999999999999988888887654 666666666666665 55555555553 5555555555542 33
Q ss_pred cCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCE
Q 044615 215 GMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSE 294 (571)
Q Consensus 215 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 294 (571)
..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+..+++|+.
T Consensus 223 ---------------------~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 223 ---------------------PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp ---------------------GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred ---------------------hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 33444555555555555555555555555555555555555555555555555555555
Q ss_pred EEccCCcCCcccchhccCCCCCCEEEccCCcC
Q 044615 295 LDLSHNIFREEIPSQICSMQSLEKLNLSHNNL 326 (571)
Q Consensus 295 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 326 (571)
|+|++|.+.+.+|..+..+++|+.+++..+.+
T Consensus 282 L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 55555555555555555555555555554443
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=256.82 Aligned_cols=236 Identities=26% Similarity=0.282 Sum_probs=127.2
Q ss_pred cccccccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccC
Q 044615 88 SIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGN 167 (571)
Q Consensus 88 ~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 167 (571)
.+|..+. ++++.|+|++|.+++..+..|.++++|++|+|++|.++...+..|.++++|++|+|++|.++...+..|..
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 3555443 45666666666666555566666666666666666666555566666666666666666666544455666
Q ss_pred CCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCC-cccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCE
Q 044615 168 MNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSN-HIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEY 246 (571)
Q Consensus 168 l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 246 (571)
+++|++|++++|++....+..|..+++ |+.|++++| .+....+..+..+++|+.|++++|.++.. | .+..+
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l----- 206 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPS-LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPL----- 206 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTT-CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTC-----
T ss_pred cccCceeeCCCCcccccCHHHhhhCcc-cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCC-----
Confidence 666666666666665433334444443 566665553 23322233444555555555555555422 2 24444
Q ss_pred EEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcC
Q 044615 247 LDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNL 326 (571)
Q Consensus 247 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 326 (571)
++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++
T Consensus 207 -------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 207 -------------------IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp -------------------SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred -------------------cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 4445555555544444444444455555555555555444444455555555555555555
Q ss_pred ccccccccccCCCCCEEECcCCcCcc
Q 044615 327 SGSIPRCFEEMHWLSCIDISYNALQG 352 (571)
Q Consensus 327 ~~~~p~~~~~l~~L~~L~ls~N~l~~ 352 (571)
++..+..|..+++|+.|+|++|++.+
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CccChhHhccccCCCEEEcCCCCccC
Confidence 54444445555555555555555443
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2e-28 Score=256.20 Aligned_cols=243 Identities=23% Similarity=0.189 Sum_probs=193.7
Q ss_pred CCEEEccCCccc---cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCCEE
Q 044615 50 ARDTSISFDELH---EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVL 126 (571)
Q Consensus 50 l~~l~l~~n~l~---~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 126 (571)
...++.+...+. ....+.++.|+|++|++++ ..|..|.++++|++|+|++|.+++..+..|.++++|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM-------IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE-------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCce-------ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence 457788777766 3334689999999999997 567889999999999999999998888999999999999
Q ss_pred EcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCCh-hhhhccCCCcEEEccCCc
Q 044615 127 DLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPL-SLANLTNSLKVLYLSSNH 205 (571)
Q Consensus 127 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~~L~~L~l~~n~ 205 (571)
+|++|.++...+..|.++++|++|+|++|.+....+..|..+++|++|++++|+..+.++. .+..+.+ |+.|++++|.
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-L~~L~L~~n~ 207 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN-LKYLNLGMCN 207 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT-CCEEECTTSC
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC-CCEEECCCCc
Confidence 9999999988888899999999999999999987777899999999999999554445554 5667775 9999999999
Q ss_pred ccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchh
Q 044615 206 IVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNK 285 (571)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 285 (571)
+++. | .+..+++|+.|++++|.+++..|..|.++++|+.|++++|.+.+..+..|.++++|+.|+|++|++++..+..
T Consensus 208 l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 208 IKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp CSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred cccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 9854 3 4667778888888888877777777777777777777777777666666666666666666666666555555
Q ss_pred hhcccCCCEEEccCCcC
Q 044615 286 IEKLIHLSELDLSHNIF 302 (571)
Q Consensus 286 ~~~l~~L~~L~Ls~n~l 302 (571)
+..+++|+.|+|++|.+
T Consensus 286 ~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPW 302 (452)
T ss_dssp STTCTTCCEEECCSSCE
T ss_pred hccccCCCEEEccCCCc
Confidence 55555555555555544
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=8.1e-29 Score=242.77 Aligned_cols=252 Identities=22% Similarity=0.219 Sum_probs=145.5
Q ss_pred CEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCC
Q 044615 100 SDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSN 179 (571)
Q Consensus 100 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 179 (571)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34555555554 233322 245555555555555544455555555555555555555554555555555555555555
Q ss_pred C-CCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCcccccc
Q 044615 180 K-LNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSI 258 (571)
Q Consensus 180 ~-l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (571)
+ +....|..+..+++ |+.|++++|.+++..|..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+++..
T Consensus 91 ~~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGR-LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTT-CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcC-CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 4 44333444444443 555555555555555555556666666666666666555555666667777777777666555
Q ss_pred chhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCC
Q 044615 259 PESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMH 338 (571)
Q Consensus 259 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 338 (571)
+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++....+.. .-..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~ 248 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA 248 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence 555666677777777777776666666666677777777777776655556667777777777777765432211 1112
Q ss_pred CCCEEECcCCcCcccCCC
Q 044615 339 WLSCIDISYNALQGLIPN 356 (571)
Q Consensus 339 ~L~~L~ls~N~l~~~~~~ 356 (571)
+++.+..+.|.+.+..|.
T Consensus 249 ~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp HHHHCCSEECCCBEEESG
T ss_pred HHHhcccccCccccCCch
Confidence 333344555666555543
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.6e-28 Score=253.26 Aligned_cols=245 Identities=24% Similarity=0.243 Sum_probs=207.4
Q ss_pred CCCEEEccCCccc---cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCCE
Q 044615 49 QARDTSISFDELH---EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVV 125 (571)
Q Consensus 49 ~l~~l~l~~n~l~---~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 125 (571)
....++.+...+. ....+.++.|+|++|+++. ..+..|.++++|++|+|++|.+++..+..|.++++|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-------~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQI-------IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT 116 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCE-------ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCe-------eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCE
Confidence 3467788877776 3344689999999999987 55678999999999999999999888899999999999
Q ss_pred EEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCCh-hhhhccCCCcEEEccCC
Q 044615 126 LDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPL-SLANLTNSLKVLYLSSN 204 (571)
Q Consensus 126 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~~L~~L~l~~n 204 (571)
|+|++|.++...+..|..+++|++|+|++|.+....+..|..+++|++|++++|+..+.++. .|..+.+ |+.|++++|
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-L~~L~L~~n 195 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN-LRYLNLAMC 195 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS-CCEEECTTS
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc-cCeecCCCC
Confidence 99999999988788899999999999999999987778899999999999999554445554 5677775 999999999
Q ss_pred cccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcch
Q 044615 205 HIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPN 284 (571)
Q Consensus 205 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 284 (571)
.++. +| .+..+++|+.|++++|.+++..|..|.++++|+.|++++|.+++..+..|.++++|+.|+|++|++++..+.
T Consensus 196 ~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 196 NLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp CCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred cCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence 9984 44 478899999999999999988888899999999999999988887777888888888888888888766666
Q ss_pred hhhcccCCCEEEccCCcCC
Q 044615 285 KIEKLIHLSELDLSHNIFR 303 (571)
Q Consensus 285 ~~~~l~~L~~L~Ls~n~l~ 303 (571)
.+..+++|+.|+|++|.+.
T Consensus 274 ~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTSSCTTCCEEECCSSCEE
T ss_pred HhccccCCCEEEcCCCCcc
Confidence 6667777777777777653
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=5.9e-29 Score=243.74 Aligned_cols=256 Identities=23% Similarity=0.229 Sum_probs=199.2
Q ss_pred ceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCC
Q 044615 69 ATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLS 148 (571)
Q Consensus 69 ~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 148 (571)
+.++.+++.++ .+|..+ .++|++|+|++|.+++..+..|..+++|++|++++|.+++..|..|.++++|+
T Consensus 14 ~~~~c~~~~l~--------~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 83 (285)
T 1ozn_A 14 VTTSCPQQGLQ--------AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83 (285)
T ss_dssp CEEECCSSCCS--------SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred eEEEcCcCCcc--------cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCC
Confidence 34555555554 356544 36888888888888877777788888888888888888877788888888888
Q ss_pred eeecccCc-CcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCcc
Q 044615 149 ILYLYENS-LCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNN 227 (571)
Q Consensus 149 ~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 227 (571)
+|++++|. +....|..+..+++|++|++++|++.+..|..+..+++ |+.|++++|.+++..+..++.+++|+.|++++
T Consensus 84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 162 (285)
T 1ozn_A 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA-LQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162 (285)
T ss_dssp EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC-CCEEECCCCcccccCHhHhccCCCccEEECCC
Confidence 88888887 76666778888888888888888888766777777775 88888888888876667788888899999999
Q ss_pred CcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccc
Q 044615 228 NELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIP 307 (571)
Q Consensus 228 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 307 (571)
|++++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+
T Consensus 163 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred CcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 98887777778888999999999999888888888889999999999999988777778888999999999998765332
Q ss_pred hhccCCCCCCEEEccCCcCcccccccccc
Q 044615 308 SQICSMQSLEKLNLSHNNLSGSIPRCFEE 336 (571)
Q Consensus 308 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 336 (571)
.. .-...++.+..+.+.+....|..+.+
T Consensus 243 ~~-~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 243 AR-PLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp GH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred cH-HHHHHHHhcccccCccccCCchHhCC
Confidence 21 00122344456777887777776654
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2.5e-30 Score=271.63 Aligned_cols=307 Identities=20% Similarity=0.182 Sum_probs=160.0
Q ss_pred hhhcCCCCCCEEEccCCccc-------cCCCC----ccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCc
Q 044615 42 KELVRAVQARDTSISFDELH-------EKLLT----FEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILN 110 (571)
Q Consensus 42 ~~l~~~~~l~~l~l~~n~l~-------~~~l~----~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~ 110 (571)
..+..+++|++|++++|.+. ...+. +|++|+|++|.++... ...+|..+..+++|++|+|++|.++
T Consensus 50 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~---~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 50 SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG---CGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG---HHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHH---HHHHHHHHccCCceeEEECCCCcCc
Confidence 34455566666666666554 12233 4666666666555311 1134555566666666666666655
Q ss_pred ccccccc-----cCCCCCCEEEcccCcCcccc----cccccCCCCCCeeecccCcCcccCCcccc-----CCCCCCEEEc
Q 044615 111 GSIPLAL-----GNLTNLVVLDLSTNKLSGSI----PLSFANLTSLSILYLYENSLCDSIPKEIG-----NMNSLSILDL 176 (571)
Q Consensus 111 ~~~~~~~-----~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L 176 (571)
+..+..+ ...++|++|++++|.++... +..+..+++|++|++++|.+.+..+..+. .+++|++|++
T Consensus 127 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 127 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEc
Confidence 4333222 12345666666666655422 34444556666666666665443333222 2446666666
Q ss_pred cCCCCCcc----CChhhhhccCCCcEEEccCCcccccC-----CccccCCCCCcEEeCccCcCcCC----CChhhhCCCC
Q 044615 177 SSNKLNGS----IPLSLANLTNSLKVLYLSSNHIVGEI-----PLGHGMLSSLIQLTLNNNELSGQ----LSPELGSLIQ 243 (571)
Q Consensus 177 ~~n~l~~~----~p~~~~~l~~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~ 243 (571)
++|.++.. ++..+..+++ |+.|++++|.++... +..+..+++|+.|++++|.++.. ++..+..+++
T Consensus 207 ~~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 285 (461)
T 1z7x_W 207 ESCGVTSDNCRDLCGIVASKAS-LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285 (461)
T ss_dssp TTSCCBTTHHHHHHHHHHHCTT-CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT
T ss_pred cCCCCcHHHHHHHHHHHHhCCC-ccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC
Confidence 66665532 2344444443 666666666554321 11122355666666666665543 3444555666
Q ss_pred CCEEEcccCccccccchhhcc-----CCCCCEEEcCCccCccC----cchhhhcccCCCEEEccCCcCCcccchhccC--
Q 044615 244 LEYLDLSANTFHKSIPESLSN-----LVKLHYLNLSNNQFSQK----IPNKIEKLIHLSELDLSHNIFREEIPSQICS-- 312 (571)
Q Consensus 244 L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-- 312 (571)
|+.|++++|.+++..+..+.. .++|+.|++++|.+++. ++..+..+++|+.|++++|.+.+..+..+..
T Consensus 286 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 365 (461)
T 1z7x_W 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365 (461)
T ss_dssp CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH
Confidence 666666666655433333322 24666666666666543 2344445566666666666655443333322
Q ss_pred ---CCCCCEEEccCCcCcc----ccccccccCCCCCEEECcCCcCcc
Q 044615 313 ---MQSLEKLNLSHNNLSG----SIPRCFEEMHWLSCIDISYNALQG 352 (571)
Q Consensus 313 ---l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~~ 352 (571)
.++|+.|++++|.+++ .+|..+..+++|+.|++++|++++
T Consensus 366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 4566666666666654 455555566666666666666553
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=4.5e-30 Score=254.98 Aligned_cols=250 Identities=22% Similarity=0.243 Sum_probs=185.4
Q ss_pred ccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCc-cccccccc-------CCCCCCeeecccCcCcccCCcc
Q 044615 93 IGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLS-GSIPLSFA-------NLTSLSILYLYENSLCDSIPKE 164 (571)
Q Consensus 93 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~ 164 (571)
++..++|++|++++|.+ .+|..+... |+.|+|++|.+. ..+|..+. ++++|++|+|++|.+.+..|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34556677777777777 455555433 677777777763 34455444 6778888888888887777776
Q ss_pred c--cCCCCCCEEEccCCCCCccCChhhhhcc----CCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCC--CCh
Q 044615 165 I--GNMNSLSILDLSSNKLNGSIPLSLANLT----NSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQ--LSP 236 (571)
Q Consensus 165 l--~~l~~L~~L~L~~n~l~~~~p~~~~~l~----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~ 236 (571)
+ ..+++|++|++++|++++. |..+..+. ++|++|++++|.+.+..|..++.+++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 7788888888888888765 77776661 3488888888888877777888888888888888887654 233
Q ss_pred hh--hCCCCCCEEEcccCcccc---ccchhhccCCCCCEEEcCCccCccCcc-hhhhcccCCCEEEccCCcCCcccchhc
Q 044615 237 EL--GSLIQLEYLDLSANTFHK---SIPESLSNLVKLHYLNLSNNQFSQKIP-NKIEKLIHLSELDLSHNIFREEIPSQI 310 (571)
Q Consensus 237 ~~--~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 310 (571)
.+ ..+++|+.|++++|.+++ .....+.++++|+.|++++|.+++..| ..+..+++|+.|++++|.++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 44 778889999999888873 222345677889999999999887664 45566788999999999987 466666
Q ss_pred cCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcc
Q 044615 311 CSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQG 352 (571)
Q Consensus 311 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 352 (571)
. ++|+.|+|++|++++. |. +..+++|+.|++++|++++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5 7899999999999876 55 8888999999999998875
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.1e-27 Score=249.57 Aligned_cols=285 Identities=26% Similarity=0.335 Sum_probs=164.0
Q ss_pred CCCCEEEccCCccc--cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCCE
Q 044615 48 VQARDTSISFDELH--EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVV 125 (571)
Q Consensus 48 ~~l~~l~l~~n~l~--~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 125 (571)
.+++.|++++|.+. -..+++|+.|++++|.+++ +|.. .++|++|++++|.+++ +| .|+++++|++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~--------l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA--------LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKI 157 (454)
T ss_dssp TTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC--------CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred CCCCEEEccCCcCCccccccCCCcEEECCCCccCc--------ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCE
Confidence 56777777777766 2234567777777777665 2211 1466777777776664 45 4666677777
Q ss_pred EEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCc
Q 044615 126 LDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNH 205 (571)
Q Consensus 126 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~ 205 (571)
|++++|.+++ +|.. .++|++|++++|.+.+ +| .++.+++|++|++++|++++ +|... .+|+.|++++|.
T Consensus 158 L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~----~~L~~L~l~~n~ 226 (454)
T 1jl5_A 158 IDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP----LSLESIVAGNNI 226 (454)
T ss_dssp EECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC----TTCCEEECCSSC
T ss_pred EECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc----CcccEEECcCCc
Confidence 7777776664 3432 2466666777666654 44 46666666666666666663 33221 236666666666
Q ss_pred ccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCcc--Ccc
Q 044615 206 IVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQ--KIP 283 (571)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~ 283 (571)
+. .+| .++.+++|+.|++++|++++ +|. .+++|+.|++++|.+.+ +|.. +++|+.|++++|.+++ ..|
T Consensus 227 l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~ 296 (454)
T 1jl5_A 227 LE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELP 296 (454)
T ss_dssp CS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCC
T ss_pred CC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcC
Confidence 65 344 35566666666666666654 222 12455555555555543 2221 2344444444444443 111
Q ss_pred hh-------------hhcc-cCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCc
Q 044615 284 NK-------------IEKL-IHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNA 349 (571)
Q Consensus 284 ~~-------------~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~ 349 (571)
.. +..+ ++|+.|++++|++++ +|.. +++|+.|++++|.+++ +|. .+++|+.|++++|+
T Consensus 297 ~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 297 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp TTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred CcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCC
Confidence 11 1122 478999999999886 5543 5889999999999984 555 47889999999999
Q ss_pred Ccc--cCCC-CCcc-------------CCCCcccccCCcCC
Q 044615 350 LQG--LIPN-STAF-------------RDAPMLALQGNKRL 374 (571)
Q Consensus 350 l~~--~~~~-~~~~-------------~~~~~l~l~~n~~~ 374 (571)
+++ .+|. ...+ .+++.+++.+|+..
T Consensus 369 l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 369 LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CSSCCCCCTTCCEEECCC-----------------------
T ss_pred CCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 998 4443 2222 56778888888754
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.8e-30 Score=272.59 Aligned_cols=322 Identities=18% Similarity=0.109 Sum_probs=167.0
Q ss_pred hcCCCCCCEEEccCCccc----------cCCCCccceeecccccccCCCCCCCccccccc-cCCC----CCCEEecccCc
Q 044615 44 LVRAVQARDTSISFDELH----------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEI-GNMK----SLSDLQLSENI 108 (571)
Q Consensus 44 l~~~~~l~~l~l~~n~l~----------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~-~~l~----~L~~L~L~~n~ 108 (571)
+..+++++.|++++|.+. +..+++|++|+|++|.+++ ..+..+ ..++ +|++|+|++|.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-------~~~~~l~~~l~~~~~~L~~L~L~~n~ 96 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD-------VGVHCVLQGLQTPSCKIQKLSLQNCC 96 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH-------HHHHHHHHTTCSTTCCCCEEECTTSC
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh-------HHHHHHHHHHhhCCCceeEEEccCCC
Confidence 344455666666666554 3344566666666665554 222222 1233 46666666666
Q ss_pred Ccc----cccccccCCCCCCEEEcccCcCccccccccc-----CCCCCCeeecccCcCcccC----CccccCCCCCCEEE
Q 044615 109 LNG----SIPLALGNLTNLVVLDLSTNKLSGSIPLSFA-----NLTSLSILYLYENSLCDSI----PKEIGNMNSLSILD 175 (571)
Q Consensus 109 i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~ 175 (571)
++. .++..+..+++|++|+|++|.++...+..+. ..++|++|++++|.+++.. +..+..+++|++|+
T Consensus 97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 97 LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 652 3355566666666666666665543332222 2345666666666655422 33444556666666
Q ss_pred ccCCCCCccCChhhhh----ccCCCcEEEccCCccccc----CCccccCCCCCcEEeCccCcCcCCC-----ChhhhCCC
Q 044615 176 LSSNKLNGSIPLSLAN----LTNSLKVLYLSSNHIVGE----IPLGHGMLSSLIQLTLNNNELSGQL-----SPELGSLI 242 (571)
Q Consensus 176 L~~n~l~~~~p~~~~~----l~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~ 242 (571)
+++|.+....+..+.. ...+|+.|++++|.++.. ++..+..+++|+.|++++|.+.+.. +..+..++
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~ 256 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCC
Confidence 6666655332222222 111366666666665542 2344445566666666666655422 11122356
Q ss_pred CCCEEEcccCccccc----cchhhccCCCCCEEEcCCccCccCcchhhhcc-----cCCCEEEccCCcCCcc----cchh
Q 044615 243 QLEYLDLSANTFHKS----IPESLSNLVKLHYLNLSNNQFSQKIPNKIEKL-----IHLSELDLSHNIFREE----IPSQ 309 (571)
Q Consensus 243 ~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~----~~~~ 309 (571)
+|+.|++++|.++.. ++..+..+++|+.|++++|.+++..+..+... ++|+.|++++|.+++. ++..
T Consensus 257 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 336 (461)
T 1z7x_W 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH
Confidence 666666666666543 34455556666666666666654333333221 4666666666666543 3444
Q ss_pred ccCCCCCCEEEccCCcCcccccccccc-----CCCCCEEECcCCcCcc----cCCC-CCccCCCCcccccCCc
Q 044615 310 ICSMQSLEKLNLSHNNLSGSIPRCFEE-----MHWLSCIDISYNALQG----LIPN-STAFRDAPMLALQGNK 372 (571)
Q Consensus 310 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~ls~N~l~~----~~~~-~~~~~~~~~l~l~~n~ 372 (571)
+..+++|+.|++++|.+++..+..+.. .+.|+.|++++|.+++ .+|. ....+.+..+++.+|+
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 555566666666666665544443332 4566666666666653 2221 2234455555555554
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.4e-29 Score=252.07 Aligned_cols=266 Identities=22% Similarity=0.229 Sum_probs=207.7
Q ss_pred cceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCC
Q 044615 68 EATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSL 147 (571)
Q Consensus 68 l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 147 (571)
++..+++.+.+.. .++..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+ +..+++|
T Consensus 12 l~i~~ls~~~l~~-------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L 82 (317)
T 3o53_A 12 YKIEKVTDSSLKQ-------ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTL 82 (317)
T ss_dssp EEEESCCTTTHHH-------HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTC
T ss_pred eeEeeccccchhh-------hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCC
Confidence 3344555555543 333445567889999999999988777889999999999999999986554 8899999
Q ss_pred CeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCcc
Q 044615 148 SILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNN 227 (571)
Q Consensus 148 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 227 (571)
++|++++|.+.+.. ..++|++|++++|++++..+.. ++ +|+.|++++|.+++..+..++.+++|+.|++++
T Consensus 83 ~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 83 RTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (317)
T ss_dssp CEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CS-SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT
T ss_pred CEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cC-CCCEEECCCCCCCCccchhhhccCCCCEEECCC
Confidence 99999999987532 3488999999999988644432 34 489999999999887777888888999999999
Q ss_pred CcCcCCCChhh-hCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCccc
Q 044615 228 NELSGQLSPEL-GSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEI 306 (571)
Q Consensus 228 n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 306 (571)
|.+.+..+..+ ..+++|+.|++++|.+++. + ....+++|+.|++++|.+++. |..+..+++|+.|++++|.+++ +
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l 229 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-I 229 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-E
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-h
Confidence 99887766666 4688999999999988765 2 234588899999999998864 4458888899999999998875 6
Q ss_pred chhccCCCCCCEEEccCCcCc-cccccccccCCCCCEEECcC-CcCcccCC
Q 044615 307 PSQICSMQSLEKLNLSHNNLS-GSIPRCFEEMHWLSCIDISY-NALQGLIP 355 (571)
Q Consensus 307 ~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~ls~-N~l~~~~~ 355 (571)
|..+..+++|+.|++++|+++ +..|..+..++.|+.+++++ +.+++..|
T Consensus 230 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 777888899999999999998 67788888888888888873 44555444
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.2e-26 Score=241.85 Aligned_cols=292 Identities=27% Similarity=0.330 Sum_probs=231.8
Q ss_pred CCchhhcCCCC-------------CCEEEccCCcccc--CCCCccceeecccccccCCCCCCCccccccccCCCCCCEEe
Q 044615 39 DDYKELVRAVQ-------------ARDTSISFDELHE--KLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQ 103 (571)
Q Consensus 39 ~~~~~l~~~~~-------------l~~l~l~~n~l~~--~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~ 103 (571)
..|.+++.+.+ ++.|++++|.++- ...+.|+.|++++|.+++ +|.. +++|++|+
T Consensus 49 ~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L~~L~l~~n~l~~--------lp~~---~~~L~~L~ 117 (454)
T 1jl5_A 49 NAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTE--------LPEL---PQSLKSLL 117 (454)
T ss_dssp TSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTCSEEECCSSCCSS--------CCCC---CTTCCEEE
T ss_pred cCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCCCEEEccCCcCCc--------cccc---cCCCcEEE
Confidence 56777777765 4999999999882 445789999999999986 4543 37899999
Q ss_pred cccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCc
Q 044615 104 LSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNG 183 (571)
Q Consensus 104 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 183 (571)
+++|.+++ +|.. .++|++|++++|.+++ +| .|+++++|++|++++|.+.+ +|..+ ++|++|++++|++++
T Consensus 118 l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~ 187 (454)
T 1jl5_A 118 VDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE 187 (454)
T ss_dssp CCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS
T ss_pred CCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc
Confidence 99999985 3322 2689999999999996 66 69999999999999999985 56543 599999999999985
Q ss_pred cCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhc
Q 044615 184 SIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLS 263 (571)
Q Consensus 184 ~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 263 (571)
+| .+..++. |+.|++++|.+++ +|.. .++|+.|++++|.+. .+| .++.+++|+.|++++|.+++ +|.
T Consensus 188 -l~-~~~~l~~-L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~--- 254 (454)
T 1jl5_A 188 -LP-ELQNLPF-LTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD--- 254 (454)
T ss_dssp -CC-CCTTCTT-CCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---
T ss_pred -Cc-cccCCCC-CCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---
Confidence 66 5888886 9999999999986 4432 358999999999998 456 48999999999999999985 443
Q ss_pred cCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCc--ccchhc-------------cCC-CCCCEEEccCCcCc
Q 044615 264 NLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFRE--EIPSQI-------------CSM-QSLEKLNLSHNNLS 327 (571)
Q Consensus 264 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~-------------~~l-~~L~~L~Ls~n~l~ 327 (571)
.+++|+.|++++|.+++ +|.. +++|+.|++++|.+++ ..|..+ ..+ ++|+.|++++|+++
T Consensus 255 ~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 255 LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330 (454)
T ss_dssp CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS
T ss_pred cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccc
Confidence 24799999999999986 4432 3677888888887766 222222 123 58899999999998
Q ss_pred cccccccccCCCCCEEECcCCcCcccCCCCCccCCCCcccccCCcCCC
Q 044615 328 GSIPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRLC 375 (571)
Q Consensus 328 ~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~l~l~~n~~~c 375 (571)
+ +|.. +++|+.|++++|.+++.++ .+..+..+++.+|+..+
T Consensus 331 ~-lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 331 E-LPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp C-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS
T ss_pred c-cccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCc
Confidence 6 5544 5889999999999997544 56889999999998654
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1e-28 Score=259.87 Aligned_cols=236 Identities=25% Similarity=0.265 Sum_probs=159.3
Q ss_pred CCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEE
Q 044615 95 NMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSIL 174 (571)
Q Consensus 95 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 174 (571)
.+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..| ++.+++|++|+|++|.+++.. ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34489999999999888778888888999999999998886655 888888888998888886532 23778888
Q ss_pred EccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhh-CCCCCCEEEcccCc
Q 044615 175 DLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELG-SLIQLEYLDLSANT 253 (571)
Q Consensus 175 ~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~ 253 (571)
++++|.+.+..+.. ++ +|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|+|++|.
T Consensus 105 ~L~~N~l~~~~~~~---l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCSR---GQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEECC---CS-SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCCccc---cC-CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 88888887544332 23 377777777777766666666677777777777777766665554 56677777777776
Q ss_pred cccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCc-ccccc
Q 044615 254 FHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLS-GSIPR 332 (571)
Q Consensus 254 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~ 332 (571)
+++.. ....+++|+.|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|.
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 66542 22346666666666666665333 35666666666666666654 4555666666666666666665 44455
Q ss_pred ccccCCCCCEEEC
Q 044615 333 CFEEMHWLSCIDI 345 (571)
Q Consensus 333 ~~~~l~~L~~L~l 345 (571)
.+..++.|+.+++
T Consensus 257 ~~~~l~~L~~l~~ 269 (487)
T 3oja_A 257 FFSKNQRVQTVAK 269 (487)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHHhCCCCcEEec
Confidence 5555544444443
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.3e-29 Score=248.77 Aligned_cols=246 Identities=23% Similarity=0.228 Sum_probs=175.3
Q ss_pred CCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCc-cccccccc-------CCCCCCEEEcccCcCccc
Q 044615 65 LTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILN-GSIPLALG-------NLTNLVVLDLSTNKLSGS 136 (571)
Q Consensus 65 l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~i~~~ 136 (571)
...|+.+++++|.+ . +|..+... |+.|+|++|.+. ..+|..+. ++++|++|+|++|.+++.
T Consensus 42 ~~~L~~l~l~~n~l-~--------~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 110 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-A--------DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT 110 (312)
T ss_dssp EEECTTHHHHCCTT-C--------CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred CCCceeEeeccccc-c--------cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch
Confidence 44566666666666 2 35444432 667777777763 33454444 567777777777777766
Q ss_pred ccccc--cCCCCCCeeecccCcCcccCCccccCC-----CCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCccccc
Q 044615 137 IPLSF--ANLTSLSILYLYENSLCDSIPKEIGNM-----NSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGE 209 (571)
Q Consensus 137 ~~~~~--~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~ 209 (571)
.|..+ ..+++|++|+|++|.+.+. |..+..+ ++|++|++++|++.+..|..+..+++ |+.|++++|++.+.
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA-LSTLDLSDNPELGE 188 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS-CCEEECCSCTTCHH
T ss_pred hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC-CCEEECCCCCcCcc
Confidence 66655 6777777777777777665 6656555 77777777777777655566666665 77777777776543
Q ss_pred --CCccc--cCCCCCcEEeCccCcCcCC---CChhhhCCCCCCEEEcccCccccccc-hhhccCCCCCEEEcCCccCccC
Q 044615 210 --IPLGH--GMLSSLIQLTLNNNELSGQ---LSPELGSLIQLEYLDLSANTFHKSIP-ESLSNLVKLHYLNLSNNQFSQK 281 (571)
Q Consensus 210 --~~~~~--~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~ 281 (571)
.+..+ ..+++|++|++++|++++. ....+..+++|+.|++++|.+++..| ..+..+++|+.|++++|.++ .
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 267 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q 267 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-S
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-h
Confidence 22233 6778888888888888732 22345678899999999999887664 45667889999999999998 5
Q ss_pred cchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCcc
Q 044615 282 IPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSG 328 (571)
Q Consensus 282 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 328 (571)
+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|++++
T Consensus 268 ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 268 VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 666555 7899999999999876 55 8889999999999999875
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.9e-28 Score=243.89 Aligned_cols=261 Identities=18% Similarity=0.160 Sum_probs=219.2
Q ss_pred CCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCC
Q 044615 49 QARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTN 122 (571)
Q Consensus 49 ~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 122 (571)
+++..+++.+.+. +..+++|+.|+|++|++++ ..|..|.++++|++|+|++|.+++..+ +..+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-------~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~ 81 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-------ISAADLAPFTKLELLNLSSNVLYETLD--LESLST 81 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-------CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTT
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCc-------CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCC
Confidence 3455666666665 5567799999999999987 567889999999999999999986554 899999
Q ss_pred CCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEcc
Q 044615 123 LVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLS 202 (571)
Q Consensus 123 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~ 202 (571)
|++|++++|.+++.. ..++|++|++++|.+.+..+. .+++|++|++++|++++..+..+..++. |+.|+++
T Consensus 82 L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~Ls 152 (317)
T 3o53_A 82 LRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLK 152 (317)
T ss_dssp CCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSS-EEEEECT
T ss_pred CCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCC-CCEEECC
Confidence 999999999998543 348999999999999876543 4688999999999999776777877776 9999999
Q ss_pred CCcccccCCccc-cCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccC
Q 044615 203 SNHIVGEIPLGH-GMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQK 281 (571)
Q Consensus 203 ~n~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 281 (571)
+|.+++..+..+ ..+++|+.|++++|.+++. + ....+++|+.|++++|.+++. |..+..+++|+.|++++|.++ .
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~ 228 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-L 228 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-E
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-c
Confidence 999998777666 4789999999999999865 2 334589999999999999865 455899999999999999998 4
Q ss_pred cchhhhcccCCCEEEccCCcCC-cccchhccCCCCCCEEEccCC-cCccccc
Q 044615 282 IPNKIEKLIHLSELDLSHNIFR-EEIPSQICSMQSLEKLNLSHN-NLSGSIP 331 (571)
Q Consensus 282 ~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n-~l~~~~p 331 (571)
+|..+..+++|+.|++++|.+. +.++..+..+++|+.|+++++ .+++..|
T Consensus 229 l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 6778899999999999999998 778889999999999999844 4555443
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=7.9e-28 Score=253.16 Aligned_cols=218 Identities=25% Similarity=0.240 Sum_probs=192.7
Q ss_pred CCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcE
Q 044615 119 NLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKV 198 (571)
Q Consensus 119 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~ 198 (571)
.+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..| +..+++|++|+|++|.+++. |. .+ +|+.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~~----~~-~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-LV----GP-SIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-EE----CT-TCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-CC----CC-CcCE
Confidence 34589999999999999888999999999999999999987655 89999999999999999853 32 23 5999
Q ss_pred EEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhc-cCCCCCEEEcCCcc
Q 044615 199 LYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLS-NLVKLHYLNLSNNQ 277 (571)
Q Consensus 199 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~ 277 (571)
|++++|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999999876654 357899999999999998888999999999999999999988888876 79999999999999
Q ss_pred CccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCc
Q 044615 278 FSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQ 351 (571)
Q Consensus 278 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 351 (571)
+++..+ ...+++|+.|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..+..++.|+.|++++|++.
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 181 IYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred cccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 987633 3468999999999999998544 58899999999999999996 6778999999999999999998
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.5e-25 Score=238.94 Aligned_cols=259 Identities=23% Similarity=0.287 Sum_probs=213.7
Q ss_pred CCCEEEccCCccc---cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCCE
Q 044615 49 QARDTSISFDELH---EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVV 125 (571)
Q Consensus 49 ~l~~l~l~~n~l~---~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 125 (571)
+++.|++++|.++ ....++|+.|++++|.++. +|. .+++|++|+|++|.++ .+|. .+++|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~--------lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~ 105 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS--------LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLE 105 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSC--------CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCE
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCC--------CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCE
Confidence 5789999999888 2233689999999999885 565 5789999999999998 4555 6789999
Q ss_pred EEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCc
Q 044615 126 LDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNH 205 (571)
Q Consensus 126 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~ 205 (571)
|+|++|.+++. |. .+++|++|++++|.++. +|.. +++|++|++++|++++ +|.. ..+|+.|++++|.
T Consensus 106 L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~----~~~L~~L~L~~N~ 172 (622)
T 3g06_A 106 LSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL----PSELCKLWAYNNQ 172 (622)
T ss_dssp EEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSC
T ss_pred EECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCc----cCCCCEEECCCCC
Confidence 99999999854 43 67899999999999975 5543 5899999999999984 5542 2359999999999
Q ss_pred ccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchh
Q 044615 206 IVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNK 285 (571)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 285 (571)
+++ +| ..+++|+.|++++|.+++. |. .+++|+.|++++|.++. +|. .+++|+.|++++|.+++ +|
T Consensus 173 l~~-l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp-- 237 (622)
T 3g06_A 173 LTS-LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP-- 237 (622)
T ss_dssp CSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC--
T ss_pred CCC-Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC--
Confidence 985 45 4578999999999999863 33 35789999999999974 443 35889999999999986 44
Q ss_pred hhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCC
Q 044615 286 IEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPN 356 (571)
Q Consensus 286 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~ 356 (571)
..+++|+.|++++|.++. +|. .+++|+.|+|++|+|+ .+|..+..+++|+.|++++|++++..|.
T Consensus 238 -~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred -CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 456899999999999985 554 6789999999999999 6788999999999999999999987654
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2.4e-25 Score=216.96 Aligned_cols=228 Identities=25% Similarity=0.251 Sum_probs=145.2
Q ss_pred EEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCC
Q 044615 101 DLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNK 180 (571)
Q Consensus 101 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 180 (571)
.++..+..+. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|+
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3445555554 4555443 467777777777776666677777777777777777776666667777777777777777
Q ss_pred CCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccc-cc
Q 044615 181 LNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKS-IP 259 (571)
Q Consensus 181 l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~ 259 (571)
+++..+..+..+++ |+.|++++|.+.+..+. .+..+++|+.|++++|.+.+. +|
T Consensus 88 l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~------------------------~~~~l~~L~~L~l~~n~l~~~~l~ 142 (276)
T 2z62_A 88 IQSLALGAFSGLSS-LQKLVAVETNLASLENF------------------------PIGHLKTLKELNVAHNLIQSFKLP 142 (276)
T ss_dssp CCEECTTTTTTCTT-CCEEECTTSCCCCSTTC------------------------CCTTCTTCCEEECCSSCCCCCCCC
T ss_pred cCccChhhhcCCcc-ccEEECCCCCccccCch------------------------hcccCCCCCEEECcCCccceecCc
Confidence 66544445555543 55555555555443333 344455555555555555432 35
Q ss_pred hhhccCCCCCEEEcCCccCccCcchhhhcccCCC----EEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccc
Q 044615 260 ESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLS----ELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFE 335 (571)
Q Consensus 260 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 335 (571)
..+..+++|+.|++++|.+++..+..+..+.+|+ .|++++|.+.+..+..+. ..+|+.|++++|.+++..+..|.
T Consensus 143 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTT
T ss_pred hhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhc
Confidence 5556666666666666666555555555555555 677777777665444443 34788888888888877667778
Q ss_pred cCCCCCEEECcCCcCcccCCCC
Q 044615 336 EMHWLSCIDISYNALQGLIPNS 357 (571)
Q Consensus 336 ~l~~L~~L~ls~N~l~~~~~~~ 357 (571)
.+++|+.|++++|++++..|..
T Consensus 222 ~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp TCCSCCEEECCSSCBCCCTTTT
T ss_pred ccccccEEEccCCcccccCCch
Confidence 8888888888888888776643
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.4e-25 Score=216.93 Aligned_cols=214 Identities=28% Similarity=0.282 Sum_probs=158.5
Q ss_pred cccccccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccC
Q 044615 88 SIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGN 167 (571)
Q Consensus 88 ~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 167 (571)
.+|..+. ++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+..
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 5777664 68999999999999877779999999999999999999888889999999999999999999888889999
Q ss_pred CCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCccccc-CCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCE
Q 044615 168 MNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGE-IPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEY 246 (571)
Q Consensus 168 l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 246 (571)
+++|++|++++|++.+..+..+..+++ |+.|++++|.+++. +|..+. .+++|+.
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~l~~~~~------------------------~l~~L~~ 153 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKT-LKELNVAHNLIQSFKLPEYFS------------------------NLTNLEH 153 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTT-CCEEECCSSCCCCCCCCGGGG------------------------GCTTCCE
T ss_pred CccccEEECCCCCccccCchhcccCCC-CCEEECcCCccceecCchhhc------------------------cCCCCCE
Confidence 999999999999998655556666665 77777777776542 244444 4445555
Q ss_pred EEcccCccccccchhhccCCCCC----EEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEcc
Q 044615 247 LDLSANTFHKSIPESLSNLVKLH----YLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLS 322 (571)
Q Consensus 247 L~L~~n~l~~~~~~~l~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 322 (571)
|++++|.+++..+..+..+++|+ .|++++|.+++..+..+. ..+|+.|++++|.+++..+..+..+++|+.|+++
T Consensus 154 L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp EECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred EECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 55555555444444444444444 666666666654443333 3367777777777776655566777778888888
Q ss_pred CCcCccc
Q 044615 323 HNNLSGS 329 (571)
Q Consensus 323 ~n~l~~~ 329 (571)
+|++++.
T Consensus 233 ~N~~~c~ 239 (276)
T 2z62_A 233 TNPWDCS 239 (276)
T ss_dssp SSCBCCC
T ss_pred CCccccc
Confidence 8877653
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.4e-24 Score=230.17 Aligned_cols=257 Identities=26% Similarity=0.325 Sum_probs=212.8
Q ss_pred ccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCC
Q 044615 67 FEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTS 146 (571)
Q Consensus 67 ~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 146 (571)
.++.+++++|.++. +|..+. ++|++|+|++|.++ .+|. .+++|++|+|++|.++. +|. .+++
T Consensus 41 ~l~~L~ls~n~L~~--------lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~ 102 (622)
T 3g06_A 41 GNAVLNVGESGLTT--------LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPG 102 (622)
T ss_dssp CCCEEECCSSCCSC--------CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTT
T ss_pred CCcEEEecCCCcCc--------cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCC
Confidence 58899999999884 677665 89999999999998 4565 57899999999999984 554 7899
Q ss_pred CCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCc
Q 044615 147 LSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLN 226 (571)
Q Consensus 147 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 226 (571)
|++|++++|.+++ +|. .+++|++|++++|+++. +|..+ + +|+.|++++|.+++ +|. .+++|+.|+++
T Consensus 103 L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~l---~-~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~ 169 (622)
T 3g06_A 103 LLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVLP---P-GLQELSVSDNQLAS-LPA---LPSELCKLWAY 169 (622)
T ss_dssp CCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCCC---T-TCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred CCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCCC---C-CCCEEECcCCcCCC-cCC---ccCCCCEEECC
Confidence 9999999999976 454 67899999999999984 66543 3 59999999999985 343 35789999999
Q ss_pred cCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCccc
Q 044615 227 NNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEI 306 (571)
Q Consensus 227 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 306 (571)
+|.+++ +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++. +|. .+++|+.|++++|.+++ +
T Consensus 170 ~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-l 236 (622)
T 3g06_A 170 NNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-L 236 (622)
T ss_dssp SSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-C
Confidence 999996 44 557899999999999985 443 35789999999999985 443 34789999999999987 5
Q ss_pred chhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCCCCccCCCCcccccCCcCC
Q 044615 307 PSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPNSTAFRDAPMLALQGNKRL 374 (571)
Q Consensus 307 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~l~l~~n~~~ 374 (571)
| ..+++|+.|+|++|.|+. +|. .+++|+.|++++|+++..++....++++..+++.+|+..
T Consensus 237 p---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 237 P---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred C---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 5 567899999999999994 554 678899999999999976555667788899999999754
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=5.3e-24 Score=206.58 Aligned_cols=203 Identities=28% Similarity=0.331 Sum_probs=119.7
Q ss_pred CCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEcc
Q 044615 98 SLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLS 177 (571)
Q Consensus 98 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 177 (571)
+.+.++++++.++ .+|..+. ++|++|+|++|.++...+..|.++++|++|++++|.+....+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4667777777776 4555443 467777777777776666667777777777777777765544555667777777777
Q ss_pred CCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccc
Q 044615 178 SNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKS 257 (571)
Q Consensus 178 ~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (571)
+|++.+..+..+..+++ |+.|++++|.+++ ..+..|..+++|+.|++++|.+++.
T Consensus 94 ~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVN-LAELRLDRNQLKS------------------------LPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp SSCCCCCCTTTTTTCSS-CCEEECCSSCCCC------------------------CCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcCCcCCHhHcccccC-CCEEECCCCccCe------------------------eCHHHhCcCcCCCEEECCCCcCCcc
Confidence 77666433333333333 5555555554443 3333444455555555555555444
Q ss_pred cchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCcc
Q 044615 258 IPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSG 328 (571)
Q Consensus 258 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 328 (571)
.+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|++..
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 44445555555555555555555444455555666666666666655545556666666666666666643
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=7.1e-24 Score=205.69 Aligned_cols=206 Identities=25% Similarity=0.296 Sum_probs=148.9
Q ss_pred CCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEc
Q 044615 122 NLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYL 201 (571)
Q Consensus 122 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l 201 (571)
+.++++++++.++ .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------- 74 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ------------------- 74 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-------------------
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-------------------
Confidence 3455555555555 2333322 34555555555555444444555555555555554443
Q ss_pred cCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccC
Q 044615 202 SSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQK 281 (571)
Q Consensus 202 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 281 (571)
...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++.
T Consensus 75 ------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 75 ------TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp ------CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ------eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 33333445566677777777777766666778888999999999998887778888999999999999999877
Q ss_pred cchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCC
Q 044615 282 IPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIP 355 (571)
Q Consensus 282 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~ 355 (571)
.+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..|..++.|+.|++++|++.+..+
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 77778888999999999999988777778889999999999999987777778888899999999998876654
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=4.5e-25 Score=214.37 Aligned_cols=210 Identities=22% Similarity=0.216 Sum_probs=135.2
Q ss_pred cCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCc
Q 044615 118 GNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLK 197 (571)
Q Consensus 118 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~ 197 (571)
..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|++++..+..+..++. |+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTN-LK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT-CC
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcC-CC
Confidence 3444555555555554421 2344555555555555555431 24555555555555555555433333444443 66
Q ss_pred EEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCcc
Q 044615 198 VLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQ 277 (571)
Q Consensus 198 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 277 (571)
.|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 66666666555555556666677777777777776666666777777777777777776666667777888888888888
Q ss_pred CccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCC
Q 044615 278 FSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHW 339 (571)
Q Consensus 278 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 339 (571)
+++..+..+..+++|+.|++++|.+.+ .+++|+.|+++.|.++|.+|.++..++.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 877777677778888888888887653 4567888888888888888887776543
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=3.3e-25 Score=215.34 Aligned_cols=220 Identities=23% Similarity=0.291 Sum_probs=153.0
Q ss_pred CCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEcc
Q 044615 123 LVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLS 202 (571)
Q Consensus 123 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~ 202 (571)
+..+++..+.+... .....+++|+.|++++|.+.. + ..+..+++|++|++++|++.+ + ..+..++. |+.|+++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~-L~~L~L~ 93 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTN-LTYLILT 93 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTT-CCEEECT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCC-CCEEECC
Confidence 33445555554433 234566777777777777653 2 346777777777777777764 2 35666664 7777777
Q ss_pred CCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCc
Q 044615 203 SNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKI 282 (571)
Q Consensus 203 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 282 (571)
+|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 77777666666777777777777777777666666777777777777777777666666777777777777777777666
Q ss_pred chhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCC
Q 044615 283 PNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPN 356 (571)
Q Consensus 283 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~ 356 (571)
+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+. ++.|+.++++.|.++|.+|.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 66667777777777777777776666677777777777777776643 44566777777777777665
No 75
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=4.1e-26 Score=233.59 Aligned_cols=255 Identities=18% Similarity=0.215 Sum_probs=164.9
Q ss_pred cccccccCCCCCCEEecccCcCccccc----ccccCCCCCCEEEcccCc---Ccccccccc-------cCCCCCCeeecc
Q 044615 88 SIPDEIGNMKSLSDLQLSENILNGSIP----LALGNLTNLVVLDLSTNK---LSGSIPLSF-------ANLTSLSILYLY 153 (571)
Q Consensus 88 ~~p~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~---i~~~~~~~~-------~~l~~L~~L~L~ 153 (571)
.++..+..+++|++|+|++|.++...+ ..+..+++|++|+|++|. +++.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 567778888999999999998886544 346788899999998864 344445444 677888888888
Q ss_pred cCcCcc----cCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCc
Q 044615 154 ENSLCD----SIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNE 229 (571)
Q Consensus 154 ~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 229 (571)
+|.+.. .+|..+..+++|++|+|++|.++...+..+..... . +..|.+.+ ..++|++|++++|+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~---~--l~~~~~~~-------~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ---E--LAVNKKAK-------NAPPLRSIICGRNR 170 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHH---H--HHHHHHHH-------TCCCCCEEECCSSC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHH---H--Hhhhhhcc-------cCCCCcEEECCCCC
Confidence 888876 35666777888888888888776433333332210 0 00001100 01445555555555
Q ss_pred CcC-CCC---hhhhCCCCCCEEEcccCcccc-----ccchhhccCCCCCEEEcCCccCc----cCcchhhhcccCCCEEE
Q 044615 230 LSG-QLS---PELGSLIQLEYLDLSANTFHK-----SIPESLSNLVKLHYLNLSNNQFS----QKIPNKIEKLIHLSELD 296 (571)
Q Consensus 230 l~~-~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~ 296 (571)
++. ..+ ..+..+++|+.|++++|.++. ..+..+..+++|+.|+|++|.++ +.+|..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 541 222 345556677777777776652 23336667777777777777775 44566667777777777
Q ss_pred ccCCcCCcc----cchhcc--CCCCCCEEEccCCcCcc----cccccc-ccCCCCCEEECcCCcCcccC
Q 044615 297 LSHNIFREE----IPSQIC--SMQSLEKLNLSHNNLSG----SIPRCF-EEMHWLSCIDISYNALQGLI 354 (571)
Q Consensus 297 Ls~n~l~~~----~~~~~~--~l~~L~~L~Ls~n~l~~----~~p~~~-~~l~~L~~L~ls~N~l~~~~ 354 (571)
|++|.+++. ++..+. .+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 777777654 445553 37788888888888876 366666 55788888888888887654
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=2.3e-25 Score=225.81 Aligned_cols=256 Identities=18% Similarity=0.193 Sum_probs=134.9
Q ss_pred eecccccccCCCCCCCccccccccCCCCCCEEecccCcCccccc----ccccCCC-CCCEEEcccCcCcccccccccCC-
Q 044615 71 AHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIP----LALGNLT-NLVVLDLSTNKLSGSIPLSFANL- 144 (571)
Q Consensus 71 l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l- 144 (571)
++++.|.+++ .+|..+...++|++|+|++|.+++..+ ..|..++ +|++|+|++|.+++..+..+..+
T Consensus 3 ~~ls~n~~~~-------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 75 (362)
T 3goz_A 3 YKLTLHPGSN-------PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75 (362)
T ss_dssp EECCCCTTCC-------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred cccccccchH-------HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHH
Confidence 4566666666 556555555557777777777765555 5566666 67777777777766655555554
Q ss_pred ----CCCCeeecccCcCcccCCccc----cCC-CCCCEEEccCCCCCccCChhhhhc----cCCCcEEEccCCcccccCC
Q 044615 145 ----TSLSILYLYENSLCDSIPKEI----GNM-NSLSILDLSSNKLNGSIPLSLANL----TNSLKVLYLSSNHIVGEIP 211 (571)
Q Consensus 145 ----~~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~p~~~~~l----~~~L~~L~l~~n~~~~~~~ 211 (571)
++|++|+|++|.+++..+..+ ..+ ++|++|++++|++++..+..+... ..+|+.|++++|.++...+
T Consensus 76 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 155 (362)
T 3goz_A 76 AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS 155 (362)
T ss_dssp HTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH
T ss_pred hccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH
Confidence 667777777777665544433 233 666777777666664443333322 2235566666555543221
Q ss_pred ccccCCCCCcEEeCccCcCcCCCChhhhCCC-CCCEEEcccCccccccchhh----ccC-CCCCEEEcCCccCccC----
Q 044615 212 LGHGMLSSLIQLTLNNNELSGQLSPELGSLI-QLEYLDLSANTFHKSIPESL----SNL-VKLHYLNLSNNQFSQK---- 281 (571)
Q Consensus 212 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~Ls~n~l~~~---- 281 (571)
.. ++..+..++ +|+.|+|++|.+++..+..+ ..+ ++|+.|++++|.+++.
T Consensus 156 ~~--------------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~ 215 (362)
T 3goz_A 156 DE--------------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE 215 (362)
T ss_dssp HH--------------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred HH--------------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH
Confidence 11 111223333 45555555555544333222 222 3555555555555432
Q ss_pred cchhhhc-ccCCCEEEccCCcCCcccc----hhccCCCCCCEEEccCCcCccc-------cccccccCCCCCEEECcCCc
Q 044615 282 IPNKIEK-LIHLSELDLSHNIFREEIP----SQICSMQSLEKLNLSHNNLSGS-------IPRCFEEMHWLSCIDISYNA 349 (571)
Q Consensus 282 ~~~~~~~-l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~-------~p~~~~~l~~L~~L~ls~N~ 349 (571)
++..+.. .++|+.|+|++|.+.+..+ ..+..+++|+.|+|++|.+.+. ++..+..++.|+.||+++|+
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 2223333 2355555555555554332 2234455666666666653322 22244455566666666666
Q ss_pred Cccc
Q 044615 350 LQGL 353 (571)
Q Consensus 350 l~~~ 353 (571)
+...
T Consensus 296 l~~~ 299 (362)
T 3goz_A 296 IHPS 299 (362)
T ss_dssp CCGG
T ss_pred CCCc
Confidence 5543
No 77
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=8.5e-26 Score=229.00 Aligned_cols=257 Identities=19% Similarity=0.163 Sum_probs=162.0
Q ss_pred EEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCC-CCCEEecccCcCcccccccccCC----
Q 044615 52 DTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMK-SLSDLQLSENILNGSIPLALGNL---- 120 (571)
Q Consensus 52 ~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l---- 120 (571)
+.+++.|.++ ......|+.|+|++|.+++... ..+...+.+++ +|++|+|++|.+++..+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIST---VELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCH---HHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHH---HHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 4677888777 4455569999999999987110 01126778888 99999999999998777777765
Q ss_pred -CCCCEEEcccCcCccccccccc----CC-CCCCeeecccCcCcccCCccc----cC-CCCCCEEEccCCCCCccCChh-
Q 044615 121 -TNLVVLDLSTNKLSGSIPLSFA----NL-TSLSILYLYENSLCDSIPKEI----GN-MNSLSILDLSSNKLNGSIPLS- 188 (571)
Q Consensus 121 -~~L~~L~L~~n~i~~~~~~~~~----~l-~~L~~L~L~~n~l~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~p~~- 188 (571)
++|++|+|++|.+++..+..+. .+ ++|++|+|++|.+++..+..+ .. .++|++|++++|+++...+..
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 9999999999999877766544 44 899999999999987666544 34 369999999999998543333
Q ss_pred ---hhhccCCCcEEEccCCcccccCCccc----cCC-CCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccch
Q 044615 189 ---LANLTNSLKVLYLSSNHIVGEIPLGH----GML-SSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPE 260 (571)
Q Consensus 189 ---~~~l~~~L~~L~l~~n~~~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 260 (571)
+...+.+|+.|++++|.+++..+..+ ... ++|+.|++++|.+++.... .++.
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~--------------------~l~~ 218 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA--------------------ELAY 218 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH--------------------HHHH
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH--------------------HHHH
Confidence 33333347777777777665443222 222 3555555555555432111 1222
Q ss_pred hhcc-CCCCCEEEcCCccCccCcc----hhhhcccCCCEEEccCCcCCcc-------cchhccCCCCCCEEEccCCcCcc
Q 044615 261 SLSN-LVKLHYLNLSNNQFSQKIP----NKIEKLIHLSELDLSHNIFREE-------IPSQICSMQSLEKLNLSHNNLSG 328 (571)
Q Consensus 261 ~l~~-l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~ 328 (571)
.+.. .++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|++..
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 3333 2345555555555544322 1223345555555555553222 22344556666777777777665
Q ss_pred ccc
Q 044615 329 SIP 331 (571)
Q Consensus 329 ~~p 331 (571)
..+
T Consensus 299 ~~~ 301 (362)
T 3goz_A 299 SHS 301 (362)
T ss_dssp GGC
T ss_pred cch
Confidence 433
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1e-23 Score=206.42 Aligned_cols=204 Identities=27% Similarity=0.263 Sum_probs=120.1
Q ss_pred cccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCC
Q 044615 92 EIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSL 171 (571)
Q Consensus 92 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 171 (571)
.++++++++++++++|.++ .+|..+. ++++.|+|++|.+++..+..|.++++|++|+|++|.+++..+ ...+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 3566777888888888877 4555443 577888888888877777777788888888888887765432 2566777
Q ss_pred CEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEccc
Q 044615 172 SILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSA 251 (571)
Q Consensus 172 ~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 251 (571)
++|++++|++. .+|..+..++. |+.|++++|++++..+..|. .+++|+.|++++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~-L~~L~l~~N~l~~l~~~~~~------------------------~l~~L~~L~L~~ 133 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPA-LTVLDVSFNRLTSLPLGALR------------------------GLGELQELYLKG 133 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTT-CCEEECCSSCCCCCCSSTTT------------------------TCTTCCEEECTT
T ss_pred CEEECCCCcCC-cCchhhccCCC-CCEEECCCCcCcccCHHHHc------------------------CCCCCCEEECCC
Confidence 77777777665 44544444443 55555555555443334444 444444444444
Q ss_pred CccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCc
Q 044615 252 NTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLS 327 (571)
Q Consensus 252 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 327 (571)
|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|+|++|+++. +|..+..+++|+.|+|++|++.
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCcc
Confidence 44444434444445555555555555544444444455555555555555542 4444555556666666666654
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=6.3e-24 Score=207.95 Aligned_cols=204 Identities=25% Similarity=0.253 Sum_probs=120.6
Q ss_pred ccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCC
Q 044615 141 FANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSL 220 (571)
Q Consensus 141 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L 220 (571)
++++++|+++++++|.++. +|..+. ++++.|++++|++++..+..+..++. |+.|++++|.+++..+. +.+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTR-LTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTT-CCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCC-CCEEECCCCccCcccCC--CCCCcC
Confidence 5566777777777777753 444432 56777777777776555556666654 77777777766643322 455666
Q ss_pred cEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCC
Q 044615 221 IQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHN 300 (571)
Q Consensus 221 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 300 (571)
+.|++++|++. .+|..+..+++|+.|++++|.+++..+..|.++++|+.|++++|++++..+..|..+++|+.|+|++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 66666666665 34445556666666666666665555555666666666666666665555555555556666666666
Q ss_pred cCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcc
Q 044615 301 IFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQG 352 (571)
Q Consensus 301 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 352 (571)
++++..+..|..+++|+.|+|++|+++ .+|..+.....|+.+++++|++.+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 665544444555556666666666555 344444445555555555555543
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.2e-25 Score=230.23 Aligned_cols=254 Identities=20% Similarity=0.216 Sum_probs=176.3
Q ss_pred CCEEecccCcCcccccccccCCCCCCEEEcccCcCccccc----ccccCCCCCCeeecccCcC---cccCCccc------
Q 044615 99 LSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIP----LSFANLTSLSILYLYENSL---CDSIPKEI------ 165 (571)
Q Consensus 99 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l---~~~~~~~l------ 165 (571)
|+...++...+. .++..+..+++|++|+|++|.++...+ ..+..+++|++|+|++|.+ .+.+|..+
T Consensus 11 L~~~~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 11 LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CEESSCCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred cccCCCCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 333333333333 455667777888888888888876533 3366778888888877533 33444433
Q ss_pred -cCCCCCCEEEccCCCCCc----cCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhC
Q 044615 166 -GNMNSLSILDLSSNKLNG----SIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGS 240 (571)
Q Consensus 166 -~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 240 (571)
..+++|++|+|++|.+.. .+|..+..+++ |+.|++++|.++...+.. ++..+..
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-L~~L~L~~n~l~~~~~~~--------------------l~~~l~~ 148 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP-LEHLYLHNNGLGPQAGAK--------------------IARALQE 148 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTT-CCEEECCSSCCHHHHHHH--------------------HHHHHHH
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCC-CCEEECcCCCCCHHHHHH--------------------HHHHHHH
Confidence 566777777777776664 23444444443 555555555443221111 1122233
Q ss_pred C---------CCCCEEEcccCccc-cccc---hhhccCCCCCEEEcCCccCcc-----CcchhhhcccCCCEEEccCCcC
Q 044615 241 L---------IQLEYLDLSANTFH-KSIP---ESLSNLVKLHYLNLSNNQFSQ-----KIPNKIEKLIHLSELDLSHNIF 302 (571)
Q Consensus 241 l---------~~L~~L~L~~n~l~-~~~~---~~l~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l 302 (571)
+ ++|+.|++++|.++ ..++ ..+..+++|+.|++++|.++. ..+..+..+++|+.|+|++|.+
T Consensus 149 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred HhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 3 89999999999997 3344 467789999999999999973 3344788899999999999999
Q ss_pred C----cccchhccCCCCCCEEEccCCcCccc----ccccccc--CCCCCEEECcCCcCcc----cCCC-C-CccCCCCcc
Q 044615 303 R----EEIPSQICSMQSLEKLNLSHNNLSGS----IPRCFEE--MHWLSCIDISYNALQG----LIPN-S-TAFRDAPML 366 (571)
Q Consensus 303 ~----~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~--l~~L~~L~ls~N~l~~----~~~~-~-~~~~~~~~l 366 (571)
+ ..+|..+..+++|+.|+|++|.+++. +|..+.. +++|+.|++++|.+++ .+|. . ..++.+..+
T Consensus 229 ~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 6 56788899999999999999999876 5666644 8999999999999998 2443 2 236888999
Q ss_pred cccCCcCC
Q 044615 367 ALQGNKRL 374 (571)
Q Consensus 367 ~l~~n~~~ 374 (571)
.+.+|+..
T Consensus 309 ~l~~N~l~ 316 (386)
T 2ca6_A 309 ELNGNRFS 316 (386)
T ss_dssp ECTTSBSC
T ss_pred EccCCcCC
Confidence 99999753
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=1.8e-23 Score=198.99 Aligned_cols=185 Identities=19% Similarity=0.225 Sum_probs=117.7
Q ss_pred cccccccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCc-CcccccccccCCCCCCeeeccc-CcCcccCCccc
Q 044615 88 SIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNK-LSGSIPLSFANLTSLSILYLYE-NSLCDSIPKEI 165 (571)
Q Consensus 88 ~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l 165 (571)
.+|. +. ++|++|++++|.+++..+..|.++++|++|++++|. ++...+..|.++++|++|++++ |.+....+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4666 43 478888888888887666678888888888888886 7766666788888888888887 88876666778
Q ss_pred cCCCCCCEEEccCCCCCccCChhhhhccCCCc---EEEccCC-cccccCCccccCCCCCc-EEeCccCcCcCCCChhhhC
Q 044615 166 GNMNSLSILDLSSNKLNGSIPLSLANLTNSLK---VLYLSSN-HIVGEIPLGHGMLSSLI-QLTLNNNELSGQLSPELGS 240 (571)
Q Consensus 166 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~ 240 (571)
..+++|++|++++|++++ +|. +..+.. |+ .|++++| .+++..+..+..+++|+ .|++++|+++...+..+..
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~-L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYS-TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCB-CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccc-cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence 888888888888888774 554 555443 55 6666666 66554444455555555 5555555555322222222
Q ss_pred CCCCCEEEcccCc-cccccchhhccC-CCCCEEEcCCccCc
Q 044615 241 LIQLEYLDLSANT-FHKSIPESLSNL-VKLHYLNLSNNQFS 279 (571)
Q Consensus 241 l~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~Ls~n~l~ 279 (571)
++|+.|++++|. ++...+..|.++ ++|+.|++++|+++
T Consensus 179 -~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp -CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred -CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 445555555552 443333444444 44444444444444
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=9.3e-25 Score=219.16 Aligned_cols=250 Identities=16% Similarity=0.180 Sum_probs=142.8
Q ss_pred CCEEecccCcCcccccccccCC--CCCCEEEcccCcCcccccccccCCCCCCeeecccCcCccc-CCccccCCCCCCEEE
Q 044615 99 LSDLQLSENILNGSIPLALGNL--TNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDS-IPKEIGNMNSLSILD 175 (571)
Q Consensus 99 L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~ 175 (571)
++.+++++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 444555544443 2233333 4455555555555443332 33445555555555554433 344444555555555
Q ss_pred ccCCCCCccCChhhhhccCCCcEEEccCC-ccccc-CCccccCCCCCcEEeCccC-cCcCC-CChhhhCCC-CCCEEEcc
Q 044615 176 LSSNKLNGSIPLSLANLTNSLKVLYLSSN-HIVGE-IPLGHGMLSSLIQLTLNNN-ELSGQ-LSPELGSLI-QLEYLDLS 250 (571)
Q Consensus 176 L~~n~l~~~~p~~~~~l~~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~L~ 250 (571)
+++|++++..+..+..+++ |+.|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+.|+++
T Consensus 125 L~~~~l~~~~~~~l~~~~~-L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSN-LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTT-CSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred CcCcccCHHHHHHHhcCCC-CCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 5555554444444444443 555555555 34321 3333445556666666666 55543 355566777 77777777
Q ss_pred cC--ccc-cccchhhccCCCCCEEEcCCcc-CccCcchhhhcccCCCEEEccCCc-CCcccchhccCCCCCCEEEccCCc
Q 044615 251 AN--TFH-KSIPESLSNLVKLHYLNLSNNQ-FSQKIPNKIEKLIHLSELDLSHNI-FREEIPSQICSMQSLEKLNLSHNN 325 (571)
Q Consensus 251 ~n--~l~-~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 325 (571)
+| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 77 344 3456666778888888888887 666666677778888888888884 33222235777888888888888
Q ss_pred CccccccccccC-CCCCEEECcCCcCcccCCCC
Q 044615 326 LSGSIPRCFEEM-HWLSCIDISYNALQGLIPNS 357 (571)
Q Consensus 326 l~~~~p~~~~~l-~~L~~L~ls~N~l~~~~~~~ 357 (571)
++.. .+..+ ..+..|++++|++++..|..
T Consensus 283 i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 283 VPDG---TLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp SCTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred cCHH---HHHHHHhhCcceEEecccCccccCCc
Confidence 4432 23322 23555668888888877753
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1e-23 Score=208.89 Aligned_cols=203 Identities=22% Similarity=0.251 Sum_probs=135.6
Q ss_pred CCCCCEEecccCcCcccccccc--cCCCCCCEEEcccCcCccccc----ccccCCCCCCeeecccCcCcccCCccccCCC
Q 044615 96 MKSLSDLQLSENILNGSIPLAL--GNLTNLVVLDLSTNKLSGSIP----LSFANLTSLSILYLYENSLCDSIPKEIGNMN 169 (571)
Q Consensus 96 l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 169 (571)
+++|++|+|++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|+|++|.+.+..|..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3557777777777776666666 667777777777777765433 3345677777777777777666666777777
Q ss_pred CCCEEEccCCCCCcc--C--ChhhhhccCCCcEEEccCCcccccCC--c-cccCCCCCcEEeCccCcCcCCCChhhhCC-
Q 044615 170 SLSILDLSSNKLNGS--I--PLSLANLTNSLKVLYLSSNHIVGEIP--L-GHGMLSSLIQLTLNNNELSGQLSPELGSL- 241 (571)
Q Consensus 170 ~L~~L~L~~n~l~~~--~--p~~~~~l~~~L~~L~l~~n~~~~~~~--~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l- 241 (571)
+|++|++++|++.+. + +..+..+++ |++|++++|.++...+ . .+..+++|++|++++|++.+..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~-L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPA-IQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCC-CCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCC-CCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 777777777776531 1 111234443 7777777777752211 1 23556777777777777777666666555
Q ss_pred --CCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCc
Q 044615 242 --IQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFRE 304 (571)
Q Consensus 242 --~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 304 (571)
++|+.|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|.++.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 57888888888887 4555553 6888888888888754 32 5677888888888888764
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=2.6e-24 Score=215.94 Aligned_cols=235 Identities=17% Similarity=0.176 Sum_probs=113.3
Q ss_pred CCCCEEecccCcCcccccccccCCCCCCEEEcccCcCccc-ccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEE
Q 044615 97 KSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGS-IPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILD 175 (571)
Q Consensus 97 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 175 (571)
++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 3444444444444433322 23344444444444444432 344444444444444444444444444444444555555
Q ss_pred ccCC-CCCcc-CChhhhhccCCCcEEEccCC-ccccc-CCccccCCC-CCcEEeCccC--cCc-CCCChhhhCCCCCCEE
Q 044615 176 LSSN-KLNGS-IPLSLANLTNSLKVLYLSSN-HIVGE-IPLGHGMLS-SLIQLTLNNN--ELS-GQLSPELGSLIQLEYL 247 (571)
Q Consensus 176 L~~n-~l~~~-~p~~~~~l~~~L~~L~l~~n-~~~~~-~~~~~~~l~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L 247 (571)
+++| .+++. ++..+..+++ |+.|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|+.|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSR-LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTT-CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred CCCCCCCCHHHHHHHHhcCCC-CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 5444 33321 2333333333 555555555 44432 233344444 5555555555 232 2334455556666666
Q ss_pred EcccCc-cccccchhhccCCCCCEEEcCCcc-CccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCc
Q 044615 248 DLSANT-FHKSIPESLSNLVKLHYLNLSNNQ-FSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNN 325 (571)
Q Consensus 248 ~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 325 (571)
++++|. +++..+..+..+++|+.|++++|. ++......+..+++|+.|++++| +.......+. .++..|++++|+
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~ 304 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSH 304 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCC
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEeccc
Confidence 666666 554555566666666666666663 22222224555666666666666 3322211221 224445567777
Q ss_pred Ccccccccccc
Q 044615 326 LSGSIPRCFEE 336 (571)
Q Consensus 326 l~~~~p~~~~~ 336 (571)
+++..|..+..
T Consensus 305 l~~~~~~~~~~ 315 (336)
T 2ast_B 305 FTTIARPTIGN 315 (336)
T ss_dssp SCCTTCSSCSS
T ss_pred CccccCCcccc
Confidence 77666665543
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=5.3e-23 Score=203.77 Aligned_cols=229 Identities=19% Similarity=0.182 Sum_probs=124.9
Q ss_pred CCCCEEecccCcCcccccc---cccCCCCCCEEEcccCcCcccccccc--cCCCCCCeeecccCcCcccCC----ccccC
Q 044615 97 KSLSDLQLSENILNGSIPL---ALGNLTNLVVLDLSTNKLSGSIPLSF--ANLTSLSILYLYENSLCDSIP----KEIGN 167 (571)
Q Consensus 97 ~~L~~L~L~~n~i~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~~ 167 (571)
..++.+.+.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|+|++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3466777777665422111 11223557777777777776666666 667777777777777765433 22345
Q ss_pred CCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEE
Q 044615 168 MNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYL 247 (571)
Q Consensus 168 l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 247 (571)
+++|++|++++|++.+..|..+..+++ |+.|++++|++.+... -..+..+..+++|+.|
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~--------------------~~~~~~~~~l~~L~~L 202 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPA-LTSLDLSDNPGLGERG--------------------LMAALCPHKFPAIQNL 202 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTT-CCEEECCSCTTCHHHH--------------------HHTTSCTTSSCCCCSC
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCC-CCEEECCCCCCccchh--------------------hhHHHhhhcCCCCCEE
Confidence 566666666666665444444444443 5555555555432100 0001112345555555
Q ss_pred EcccCcccccc--ch-hhccCCCCCEEEcCCccCccCcchhhhcc---cCCCEEEccCCcCCcccchhccCCCCCCEEEc
Q 044615 248 DLSANTFHKSI--PE-SLSNLVKLHYLNLSNNQFSQKIPNKIEKL---IHLSELDLSHNIFREEIPSQICSMQSLEKLNL 321 (571)
Q Consensus 248 ~L~~n~l~~~~--~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 321 (571)
++++|.++... +. .+..+++|++|++++|.+++..|..+..+ ++|+.|+|++|+++. +|..+. ++|+.|+|
T Consensus 203 ~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 203 ALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDL 279 (310)
T ss_dssp BCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEEC
T ss_pred ECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEEC
Confidence 55555553211 11 23455666666666666655545444444 466666666666653 444443 56777777
Q ss_pred cCCcCccccccccccCCCCCEEECcCCcCc
Q 044615 322 SHNNLSGSIPRCFEEMHWLSCIDISYNALQ 351 (571)
Q Consensus 322 s~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 351 (571)
++|++++. |. +..++.|+.|++++|+++
T Consensus 280 s~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 280 SSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 77777653 22 456667777777777665
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=6.2e-23 Score=195.32 Aligned_cols=196 Identities=17% Similarity=0.190 Sum_probs=118.4
Q ss_pred CCCEEEcccCcCcccccccccCCCCCCeeecccCc-CcccCCccccCCCCCCEEEccC-CCCCccCChhhhhccCCCcEE
Q 044615 122 NLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENS-LCDSIPKEIGNMNSLSILDLSS-NKLNGSIPLSLANLTNSLKVL 199 (571)
Q Consensus 122 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~~L~~L 199 (571)
+|++|++++|++++..+..|.++++|++|++++|. +....+..|..+++|++|++++ |++++..+..|..+++ |+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~-L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL-LKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT-CCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC-CCEE
Confidence 67777777777776666677777777777777775 6655555677777777777776 6666433344444443 5555
Q ss_pred EccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCC---EEEcccC-ccccccchhhccCCCCC-EEEcC
Q 044615 200 YLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLE---YLDLSAN-TFHKSIPESLSNLVKLH-YLNLS 274 (571)
Q Consensus 200 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~Ls 274 (571)
++++|.+++ +|. +..+++|+ .|++++| .++...+..|.++++|+ .|+++
T Consensus 111 ~l~~n~l~~-lp~-------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-------------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEEECCCS-CCC-------------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred eCCCCCCcc-ccc-------------------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 555555543 222 44444444 5566655 55554445556666666 66666
Q ss_pred CccCccCcchhhhcccCCCEEEccCCc-CCcccchhccCC-CCCCEEEccCCcCccccccccccCCCCCEEECcCC
Q 044615 275 NNQFSQKIPNKIEKLIHLSELDLSHNI-FREEIPSQICSM-QSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYN 348 (571)
Q Consensus 275 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N 348 (571)
+|.++...+..+.. ++|+.|++++|+ +++..+..|..+ ++|+.|++++|++++..+. .++.|+.|+++++
T Consensus 165 ~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 165 NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 66665333333333 566666666663 665555566666 6777777777777643332 4556666666654
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=4.3e-22 Score=190.88 Aligned_cols=179 Identities=22% Similarity=0.253 Sum_probs=114.8
Q ss_pred CCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcc
Q 044615 171 LSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLS 250 (571)
Q Consensus 171 L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 250 (571)
.++++++++.++ .+|..+. .+++.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|+.|+++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 344555555554 3443332 235566666666655555556666666666666666666555566666666666666
Q ss_pred cCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCcccc
Q 044615 251 ANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSI 330 (571)
Q Consensus 251 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 330 (571)
+|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 66666555566666677777777777776555555666777777777777776655556677777777777777777666
Q ss_pred ccccccCCCCCEEECcCCcCccc
Q 044615 331 PRCFEEMHWLSCIDISYNALQGL 353 (571)
Q Consensus 331 p~~~~~l~~L~~L~ls~N~l~~~ 353 (571)
+..|..+++|+.|++++|++++.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 66677777777777777777655
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=8.1e-22 Score=188.99 Aligned_cols=179 Identities=26% Similarity=0.308 Sum_probs=108.6
Q ss_pred CCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEcc
Q 044615 98 SLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLS 177 (571)
Q Consensus 98 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 177 (571)
..++++++++.++ .+|..+. ++|+.|+|++|.+++..+..|.++++|++|+|++|.+.+..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4566777777666 4554443 467777777777766666667777777777777777766666666667777777777
Q ss_pred CCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccc
Q 044615 178 SNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKS 257 (571)
Q Consensus 178 ~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (571)
+|++++..+..+..+++ |+.|++++|.+++..+..+..+++|+.|++++|++++..+..|..+++|+.|+|++|.+++.
T Consensus 92 ~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQ-LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCC-CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 77666444444444443 66666666666544444455555666666666666554444555566666666666665555
Q ss_pred cchhhccCCCCCEEEcCCccCcc
Q 044615 258 IPESLSNLVKLHYLNLSNNQFSQ 280 (571)
Q Consensus 258 ~~~~l~~l~~L~~L~Ls~n~l~~ 280 (571)
.+..+..+++|+.|++++|.+..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHHHHhCCCCCCEEEeeCCceeC
Confidence 44455555555555555555543
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=3.4e-22 Score=197.56 Aligned_cols=191 Identities=27% Similarity=0.404 Sum_probs=89.6
Q ss_pred CCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEE
Q 044615 120 LTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVL 199 (571)
Q Consensus 120 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L 199 (571)
+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|++.+ ++ .+..+++ |+.|
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~-L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQS-IKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTT-CCEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCC-CCEE
Confidence 3444444444444432 22 24444444444444444433221 4444444444444444432 11 2333332 4444
Q ss_pred EccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCc
Q 044615 200 YLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFS 279 (571)
Q Consensus 200 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 279 (571)
++++|.+++. + .+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.++
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 4444444321 1 13444455555555555543222 4555555566665555553322 555555666666666555
Q ss_pred cCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCc
Q 044615 280 QKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLS 327 (571)
Q Consensus 280 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 327 (571)
+..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|+++
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred cChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 4322 4555555555555555554332 555555666666555554
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=3.3e-22 Score=197.70 Aligned_cols=194 Identities=29% Similarity=0.420 Sum_probs=126.2
Q ss_pred cCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCE
Q 044615 94 GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSI 173 (571)
Q Consensus 94 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 173 (571)
..+++|++|++++|.+.. ++ .+..+++|++|+|++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 345666666666666653 33 45666666666666666664333 66666666666666666542 24666666666
Q ss_pred EEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCc
Q 044615 174 LDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANT 253 (571)
Q Consensus 174 L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (571)
|++++|++++ ++. +..+++ |+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.
T Consensus 112 L~l~~n~l~~-~~~-l~~l~~-L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 112 LDLTSTQITD-VTP-LAGLSN-LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EECTTSCCCC-CGG-GTTCTT-CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCCCCC-chh-hcCCCC-CCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 6666666663 332 555554 6777777776664333 5666777777777777765332 6777777888887777
Q ss_pred cccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCc
Q 044615 254 FHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFRE 304 (571)
Q Consensus 254 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 304 (571)
+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|.+++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 765433 6777788888888888775543 6777888888888887765
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=7.3e-24 Score=229.55 Aligned_cols=319 Identities=13% Similarity=0.042 Sum_probs=168.8
Q ss_pred CCCEEEccCCc-cc-------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCc----cccccc
Q 044615 49 QARDTSISFDE-LH-------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILN----GSIPLA 116 (571)
Q Consensus 49 ~l~~l~l~~n~-l~-------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~----~~~~~~ 116 (571)
+|+.|+|+.+. +. ...+++|++|+|++|.+++.... .++..+.++++|++|++++|.++ ..++..
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~---~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~ 215 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK---WLHELAQHNTSLEVLNFYMTEFAKISPKDLETI 215 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSH---HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchh---HHHHHHhcCCCccEEEeeccCCCccCHHHHHHH
Confidence 47777777765 22 23567777788877777652110 13334456677777777777765 234444
Q ss_pred ccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCc--------------------------ccCCccccCCCC
Q 044615 117 LGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLC--------------------------DSIPKEIGNMNS 170 (571)
Q Consensus 117 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--------------------------~~~~~~l~~l~~ 170 (571)
+.++++|++|++++|.+.+ +|..+.++++|++|+++.+... ..+|..+..+++
T Consensus 216 ~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~ 294 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ 294 (592)
T ss_dssp HHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGG
T ss_pred HhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCC
Confidence 5566777777777777664 4455666666666666532211 123333344445
Q ss_pred CCEEEccCCCCCccCChh-hhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCcc-----------CcCcCCC-Chh
Q 044615 171 LSILDLSSNKLNGSIPLS-LANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNN-----------NELSGQL-SPE 237 (571)
Q Consensus 171 L~~L~L~~n~l~~~~p~~-~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~~-~~~ 237 (571)
|++|++++|.+++..... +..+++ |+.|+++++.....++.....+++|+.|++++ |.+++.. +..
T Consensus 295 L~~L~Ls~~~l~~~~~~~~~~~~~~-L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 295 IRKLDLLYALLETEDHCTLIQKCPN-LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp CCEEEETTCCCCHHHHHHHHTTCTT-CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred CcEEecCCCcCCHHHHHHHHHhCcC-CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 555555555543222111 222332 55555542211111122223345566666652 3333221 112
Q ss_pred hhCCCCCCEEEcccCccccccchhhcc-CCCCCEEEcC----CccCccC-----cchhhhcccCCCEEEccCCc--CCcc
Q 044615 238 LGSLIQLEYLDLSANTFHKSIPESLSN-LVKLHYLNLS----NNQFSQK-----IPNKIEKLIHLSELDLSHNI--FREE 305 (571)
Q Consensus 238 ~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~ 305 (571)
...+++|+.|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|+.|++++|. +++.
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 334666666666666665554444443 6666666664 4555542 23334556666677665432 4443
Q ss_pred cchhcc-CCCCCCEEEccCCcCccc-cccccccCCCCCEEECcCCcCcccC-CC-CCccCCCCcccccCCc
Q 044615 306 IPSQIC-SMQSLEKLNLSHNNLSGS-IPRCFEEMHWLSCIDISYNALQGLI-PN-STAFRDAPMLALQGNK 372 (571)
Q Consensus 306 ~~~~~~-~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~-~~-~~~~~~~~~l~l~~n~ 372 (571)
.+..+. .+++|+.|++++|++++. ++..+..+++|+.|++++|++++.. +. ...++.++.+++.+|+
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 333332 366777777777777652 3344456677777777777765431 11 1234566667777765
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=3.3e-23 Score=224.39 Aligned_cols=303 Identities=13% Similarity=0.042 Sum_probs=223.4
Q ss_pred hcCCCCCCEEEccCCccc----------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccc
Q 044615 44 LVRAVQARDTSISFDELH----------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSI 113 (571)
Q Consensus 44 l~~~~~l~~l~l~~n~l~----------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~ 113 (571)
...+++|+.|+|++|.+. ...++.|+.|+++.|.+++.. ...++..+.++++|++|+|++|.+.+ +
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~~~~-l 235 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS---PKDLETIARNCRSLVSVKVGDFEILE-L 235 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCC---HHHHHHHHHHCTTCCEEECSSCBGGG-G
T ss_pred HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccC---HHHHHHHHhhCCCCcEEeccCccHHH-H
Confidence 347889999999999864 346788999999999887411 11455666788899999999888764 4
Q ss_pred cccccCCCCCCEEEcc---------------------------cCcCcccccccccCCCCCCeeecccCcCcccCC-ccc
Q 044615 114 PLALGNLTNLVVLDLS---------------------------TNKLSGSIPLSFANLTSLSILYLYENSLCDSIP-KEI 165 (571)
Q Consensus 114 ~~~~~~l~~L~~L~L~---------------------------~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l 165 (571)
|..+..+++|+.|+++ ++. ...+|..+..+++|++|+|++|.+.+... ..+
T Consensus 236 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~ 314 (592)
T 3ogk_B 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314 (592)
T ss_dssp HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH
Confidence 5555666666666665 322 23456677889999999999999765433 346
Q ss_pred cCCCCCCEEEccCCCCCccCChhh-hhccCCCcEEEcc-----------CCcccccC-CccccCCCCCcEEeCccCcCcC
Q 044615 166 GNMNSLSILDLSSNKLNGSIPLSL-ANLTNSLKVLYLS-----------SNHIVGEI-PLGHGMLSSLIQLTLNNNELSG 232 (571)
Q Consensus 166 ~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~~L~~L~l~-----------~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~ 232 (571)
..+++|++|+++ +.+.......+ ..++ +|+.|+++ .|.++... +.....+++|++|++..|.+++
T Consensus 315 ~~~~~L~~L~L~-~~~~~~~l~~~~~~~~-~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 315 QKCPNLEVLETR-NVIGDRGLEVLAQYCK-QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp TTCTTCCEEEEE-GGGHHHHHHHHHHHCT-TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred HhCcCCCEEecc-CccCHHHHHHHHHhCC-CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence 889999999999 44443222233 4455 49999999 35665332 2223458899999999999988
Q ss_pred CCChhhhC-CCCCCEEEcc----cCccccc-----cchhhccCCCCCEEEcCCcc--CccCcchhhh-cccCCCEEEccC
Q 044615 233 QLSPELGS-LIQLEYLDLS----ANTFHKS-----IPESLSNLVKLHYLNLSNNQ--FSQKIPNKIE-KLIHLSELDLSH 299 (571)
Q Consensus 233 ~~~~~~~~-l~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~ 299 (571)
..+..+.. +++|+.|+++ .|.+++. ++..+.++++|+.|+++.|. +++..+..+. .+++|+.|++++
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY 472 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS
T ss_pred HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC
Confidence 77777766 9999999996 6677753 44457789999999998644 6655555454 488999999999
Q ss_pred CcCCcc-cchhccCCCCCCEEEccCCcCccc-cccccccCCCCCEEECcCCcCccc
Q 044615 300 NIFREE-IPSQICSMQSLEKLNLSHNNLSGS-IPRCFEEMHWLSCIDISYNALQGL 353 (571)
Q Consensus 300 n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~ 353 (571)
|.+++. ++..+.++++|+.|++++|.+++. ++.....+++|+.|++++|+++..
T Consensus 473 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 473 VGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 999863 455668899999999999998765 344456789999999999998754
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=9.2e-21 Score=190.95 Aligned_cols=189 Identities=19% Similarity=0.153 Sum_probs=114.7
Q ss_pred cccccccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCccccc-ccccCCCCCCe-eecccCcCcccCCccc
Q 044615 88 SIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIP-LSFANLTSLSI-LYLYENSLCDSIPKEI 165 (571)
Q Consensus 88 ~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~-L~L~~n~l~~~~~~~l 165 (571)
.+|..+. +++++|+|++|+|+...+.+|.++++|++|+|++|.+.+.+| ..|.++++|++ +.+..|++....|+.|
T Consensus 23 ~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 23 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 4666552 578888888888875555678888888888888888755443 46777777765 4556677777667778
Q ss_pred cCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccC-CcccccCCccccCCC-CCcEEeCccCcCcCCCChhhhCCCC
Q 044615 166 GNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSS-NHIVGEIPLGHGMLS-SLIQLTLNNNELSGQLSPELGSLIQ 243 (571)
Q Consensus 166 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~-n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~ 243 (571)
..+++|++|++++|++....+..+....+ +..|++.+ +.+....+..+..+. .++.|++++|+++...+. .....+
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~-~f~~~~ 178 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQ-KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS-AFNGTQ 178 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSS-CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT-SSTTEE
T ss_pred hhccccccccccccccccCCchhhcccch-hhhhhhccccccccccccchhhcchhhhhhccccccccCCChh-hccccc
Confidence 88888888888888877544444444443 66666654 445444444444432 455566666666543222 223345
Q ss_pred CCEEEccc-CccccccchhhccCCCCCEEEcCCccCcc
Q 044615 244 LEYLDLSA-NTFHKSIPESLSNLVKLHYLNLSNNQFSQ 280 (571)
Q Consensus 244 L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 280 (571)
|+.|++++ |.++...+..|.++++|+.|++++|+++.
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 55555543 33433333345555555555555555553
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=9e-21 Score=191.00 Aligned_cols=240 Identities=20% Similarity=0.157 Sum_probs=168.8
Q ss_pred CEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCC-ccccCCCCCCE-EEcc
Q 044615 100 SDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIP-KEIGNMNSLSI-LDLS 177 (571)
Q Consensus 100 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~-L~L~ 177 (571)
++++.++++++ .+|..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|.+.+.+| ..|.++++|++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56788888887 567665 3589999999999987777789999999999999999866555 46788888765 5666
Q ss_pred CCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCcc-CcCcCCCChhhhCCC-CCCEEEcccCccc
Q 044615 178 SNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNN-NELSGQLSPELGSLI-QLEYLDLSANTFH 255 (571)
Q Consensus 178 ~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 255 (571)
.|++....|..|..+++ |+.|++++|.+....+..+....++..|++.+ +.+....+..|..+. .++.|++++|.++
T Consensus 89 ~N~l~~l~~~~f~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPN-LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTT-CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccc-cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 78888666667777775 88888888888866666666666777777755 556655555666654 5777888888887
Q ss_pred cccchhhccCCCCCEEEcCC-ccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCcccccccc
Q 044615 256 KSIPESLSNLVKLHYLNLSN-NQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCF 334 (571)
Q Consensus 256 ~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 334 (571)
...+ ......+|+.|++++ |.++...+..|..+++|+.|+|++|+++...+.. +.+|+.|.+.++.--..+| .+
T Consensus 168 ~i~~-~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 EIHN-SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp EECT-TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CT
T ss_pred CCCh-hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cc
Confidence 5433 333456778888764 5555444456777888888888888887644433 4455555554443333555 36
Q ss_pred ccCCCCCEEECcCC
Q 044615 335 EEMHWLSCIDISYN 348 (571)
Q Consensus 335 ~~l~~L~~L~ls~N 348 (571)
..+++|+.++++++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 67777777777654
No 95
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=3.9e-22 Score=216.04 Aligned_cols=319 Identities=13% Similarity=0.081 Sum_probs=173.6
Q ss_pred cCCCCCCEEEccCCccc------c-CCCCccceeecccc-cccCCCCCCCccccccccCCCCCCEEecccCcCccccccc
Q 044615 45 VRAVQARDTSISFDELH------E-KLLTFEATAHFSVL-AFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLA 116 (571)
Q Consensus 45 ~~~~~l~~l~l~~n~l~------~-~~l~~l~~l~l~~n-~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~ 116 (571)
..+.+|+.|+|+++.+. + ..+++|+.|+|++| .++. ..++..+.++++|++|+|++|.+++..+..
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~------~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST------DGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH------HHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH------HHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 46778888888888766 2 25778888888887 4443 024444557788888888888776544333
Q ss_pred c----cCCCCCCEEEcccCc--Ccc-cccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCC---------
Q 044615 117 L----GNLTNLVVLDLSTNK--LSG-SIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNK--------- 180 (571)
Q Consensus 117 ~----~~l~~L~~L~L~~n~--i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~--------- 180 (571)
+ ..+++|++|++++|. +.. .++..+.++++|++|++++|...+.+|..+..+++|++|+++.+.
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 3 356688888888876 221 112223456788888887773222244455556666666544331
Q ss_pred -----------------CC----ccCChhhhhccCCCcEEEccCCcccccCC-ccccCCCCCcEEeCccCcCcCC-CChh
Q 044615 181 -----------------LN----GSIPLSLANLTNSLKVLYLSSNHIVGEIP-LGHGMLSSLIQLTLNNNELSGQ-LSPE 237 (571)
Q Consensus 181 -----------------l~----~~~p~~~~~l~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~ 237 (571)
+. ..++..+..+++ |+.|++++|.+++... ..+..+++|+.|++++| +... ++..
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~-L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l 333 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR-LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVL 333 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTT-CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCC-CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHH
Confidence 11 112222223443 7777777777653221 22345677777777766 3321 1122
Q ss_pred hhCCCCCCEEEcc---------cCccccccchhh-ccCCCCCEEEcCCccCccCcchhhh-cccCCCEEEcc--C----C
Q 044615 238 LGSLIQLEYLDLS---------ANTFHKSIPESL-SNLVKLHYLNLSNNQFSQKIPNKIE-KLIHLSELDLS--H----N 300 (571)
Q Consensus 238 ~~~l~~L~~L~L~---------~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n 300 (571)
...+++|+.|++. .+.+++.....+ .++++|+.|.++.|.+++.....+. .+++|+.|+++ + |
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 2346667777662 233433222222 2366666666666666554444343 35666666666 3 3
Q ss_pred cCCcc-----cchhccCCCCCCEEEccCCcCcccccccccc-CCCCCEEECcCCcCcccCCC-C-CccCCCCcccccCCc
Q 044615 301 IFREE-----IPSQICSMQSLEKLNLSHNNLSGSIPRCFEE-MHWLSCIDISYNALQGLIPN-S-TAFRDAPMLALQGNK 372 (571)
Q Consensus 301 ~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~ls~N~l~~~~~~-~-~~~~~~~~l~l~~n~ 372 (571)
.+++. ++..+..+++|+.|++++ .++...+..+.. +++|+.|++++|.+++..+. . ..++++..+.+.+|+
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 34321 122244556666666655 454444444443 56666666666665432211 0 224555566666554
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.2e-20 Score=172.46 Aligned_cols=131 Identities=31% Similarity=0.314 Sum_probs=54.1
Q ss_pred CCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEc
Q 044615 122 NLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYL 201 (571)
Q Consensus 122 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l 201 (571)
+|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++ |+.|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ-LKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC-CCEEEc
Confidence 4444444444444333333444444444444444444333333444444444444444444222222233332 444444
Q ss_pred cCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCc
Q 044615 202 SSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANT 253 (571)
Q Consensus 202 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (571)
++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 4444333333333334444444444444443333334444444444444443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.3e-20 Score=172.34 Aligned_cols=170 Identities=26% Similarity=0.226 Sum_probs=137.5
Q ss_pred cccccccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccC
Q 044615 88 SIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGN 167 (571)
Q Consensus 88 ~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 167 (571)
.+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..
T Consensus 21 ~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 98 (208)
T 2o6s_A 21 SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98 (208)
T ss_dssp SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence 355544 358899999999988776777888899999999999998777777888999999999999988766667888
Q ss_pred CCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEE
Q 044615 168 MNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYL 247 (571)
Q Consensus 168 l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 247 (571)
+++|++|++++|++++..+..+..+++ |+.|++++|.+++..+..+..+++|+.|++++|.+.+ .+++|+.|
T Consensus 99 l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L 170 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDGVFDKLTQ-LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYL 170 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHH
T ss_pred ccCCCEEEcCCCcCcccCHhHhccCCc-CCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHH
Confidence 999999999999988655555667775 9999999999987766678888999999999997764 35678888
Q ss_pred EcccCccccccchhhccCCC
Q 044615 248 DLSANTFHKSIPESLSNLVK 267 (571)
Q Consensus 248 ~L~~n~l~~~~~~~l~~l~~ 267 (571)
+++.|.+++.+|..++.++.
T Consensus 171 ~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 171 SEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHHHHHCTTTBBCTTSSBCT
T ss_pred HHHHHhCCceeeccCccccC
Confidence 88888888888887776654
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=5e-20 Score=195.40 Aligned_cols=193 Identities=28% Similarity=0.370 Sum_probs=97.1
Q ss_pred CCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEcc
Q 044615 98 SLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLS 177 (571)
Q Consensus 98 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 177 (571)
+|+.|+|++|.+++ +|..+. ++|++|+|++|.|+ .+| ..+++|++|+|++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 66666666666664 444442 56666666666666 344 335666666666666654 444 433 56666666
Q ss_pred CCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccc
Q 044615 178 SNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKS 257 (571)
Q Consensus 178 ~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (571)
+|++++ +|. .++ +|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|+|++|.++ .
T Consensus 129 ~N~l~~-lp~---~l~-~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPA-LLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCT-TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCc-cccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 666653 443 222 35555555555553 332 34455555555555554 232 32 45555555555544 2
Q ss_pred cchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCcccccccccc
Q 044615 258 IPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEE 336 (571)
Q Consensus 258 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 336 (571)
+|. +.. +| +...+.|+.|+|++|.++. +|..+..+++|+.|+|++|++++.+|..+..
T Consensus 195 lp~-~~~--~L-----------------~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 195 LPA-VPV--RN-----------------HHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCC-CC---------------------------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hhh-HHH--hh-----------------hcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 222 222 33 0000111555555555543 4444444555555555555555555555444
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=3e-20 Score=197.12 Aligned_cols=189 Identities=25% Similarity=0.340 Sum_probs=154.2
Q ss_pred ccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCC
Q 044615 67 FEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTS 146 (571)
Q Consensus 67 ~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 146 (571)
+++.|++++|.+++ +|..+. ++|++|+|++|.++ .+| ..+++|++|+|++|.|++ +|. +.+ +
T Consensus 60 ~L~~L~Ls~n~L~~--------lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~ 121 (571)
T 3cvr_A 60 QFSELQLNRLNLSS--------LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--S 121 (571)
T ss_dssp TCSEEECCSSCCSC--------CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--T
T ss_pred CccEEEeCCCCCCc--------cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--C
Confidence 89999999999885 666553 78999999999998 567 557999999999999997 666 665 9
Q ss_pred CCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCc
Q 044615 147 LSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLN 226 (571)
Q Consensus 147 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 226 (571)
|++|+|++|.+++ +|. .+++|++|++++|++++ +|. .++ +|+.|++++|.+++ +|. +. ++|+.|+++
T Consensus 122 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~-~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 122 LKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPT-SLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCT-TCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCC-CcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 9999999999987 665 68999999999999985 665 334 59999999999987 665 55 899999999
Q ss_pred cCcCcCCCChhhhCCCCC-------CEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccC
Q 044615 227 NNELSGQLSPELGSLIQL-------EYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIH 291 (571)
Q Consensus 227 ~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 291 (571)
+|.++. +|. +.. +| +.|+|++|.++ .+|..+..+++|+.|+|++|.+++..|..+..+..
T Consensus 189 ~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 189 TNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 999994 555 543 66 88888888887 46777777888888888888888877777766543
No 100
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=1.7e-21 Score=210.96 Aligned_cols=326 Identities=13% Similarity=0.054 Sum_probs=223.1
Q ss_pred hhhc-CCCCCCEEEccCC-ccc-------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCc--Cc
Q 044615 42 KELV-RAVQARDTSISFD-ELH-------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENI--LN 110 (571)
Q Consensus 42 ~~l~-~~~~l~~l~l~~n-~l~-------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~--i~ 110 (571)
..+. .+++|+.|+++.+ .+. ...+++|++|++++|.+++.... .++.....+++|++|++++|. +.
T Consensus 123 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~ 199 (594)
T 2p1m_B 123 ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH---WLSHFPDTYTSLVSLNISCLASEVS 199 (594)
T ss_dssp HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGG---GGGGSCTTCCCCCEEECTTCCSCCC
T ss_pred HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchH---HHHHHhhcCCcCcEEEecccCCcCC
Confidence 3444 6889999999998 444 34789999999999998873211 233334477899999999986 32
Q ss_pred cc-ccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCc--------------------------Cc----c
Q 044615 111 GS-IPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENS--------------------------LC----D 159 (571)
Q Consensus 111 ~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--------------------------l~----~ 159 (571)
.. ++..+..+++|++|++++|.-...++..+..+++|++|+++.+. +. .
T Consensus 200 ~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~ 279 (594)
T 2p1m_B 200 FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA 279 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG
T ss_pred HHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchh
Confidence 11 22233457899999999983222366667777888888755442 11 1
Q ss_pred cCCccccCCCCCCEEEccCCCCCccCChh-hhhccCCCcEEEccCCccccc-CCccccCCCCCcEEeCcc---------C
Q 044615 160 SIPKEIGNMNSLSILDLSSNKLNGSIPLS-LANLTNSLKVLYLSSNHIVGE-IPLGHGMLSSLIQLTLNN---------N 228 (571)
Q Consensus 160 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~---------n 228 (571)
.++..+..+++|++|++++|.+++..... +..++ +|+.|++++| +... ++.....+++|+.|++.+ +
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~-~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~ 357 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP-KLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT-TCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC-CcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCC
Confidence 22333346789999999999976433333 33455 4999999988 4322 222223578899998833 4
Q ss_pred cCcCCCChhhh-CCCCCCEEEcccCccccccchhhc-cCCCCCEEEcC--C----ccCccC-----cchhhhcccCCCEE
Q 044615 229 ELSGQLSPELG-SLIQLEYLDLSANTFHKSIPESLS-NLVKLHYLNLS--N----NQFSQK-----IPNKIEKLIHLSEL 295 (571)
Q Consensus 229 ~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls--~----n~l~~~-----~~~~~~~l~~L~~L 295 (571)
.+++.....+. .+++|+.|.++.|.+++..+..+. .+++|+.|+++ + +.++.. ++..+..+++|+.|
T Consensus 358 ~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L 437 (594)
T 2p1m_B 358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEE
T ss_pred CCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEE
Confidence 55443333333 489999999988988876665654 58999999999 4 555522 22336678899999
Q ss_pred EccCCcCCcccchhccC-CCCCCEEEccCCcCcccccccc-ccCCCCCEEECcCCcCcccCCC--CCccCCCCcccccCC
Q 044615 296 DLSHNIFREEIPSQICS-MQSLEKLNLSHNNLSGSIPRCF-EEMHWLSCIDISYNALQGLIPN--STAFRDAPMLALQGN 371 (571)
Q Consensus 296 ~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~~~--~~~~~~~~~l~l~~n 371 (571)
++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|++++|.+++.... ...+++++.+++.+|
T Consensus 438 ~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 438 SLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp ECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred eecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence 9987 666655555655 8899999999999987666555 6689999999999998543221 234567888888887
Q ss_pred cC
Q 044615 372 KR 373 (571)
Q Consensus 372 ~~ 373 (571)
+.
T Consensus 517 ~~ 518 (594)
T 2p1m_B 517 SV 518 (594)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=5.9e-20 Score=179.85 Aligned_cols=170 Identities=29% Similarity=0.416 Sum_probs=86.3
Q ss_pred cCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCE
Q 044615 94 GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSI 173 (571)
Q Consensus 94 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 173 (571)
..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+ +| .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 3456666666666666532 2 35566666666666666664433 6666666666666666654 22 3566666666
Q ss_pred EEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCc
Q 044615 174 LDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANT 253 (571)
Q Consensus 174 L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (571)
|++++|++.+ + ..+..+++ |+.|++++|.+++. ..+..+++|+.|++++|++++..+ +..+++|+.|++++|.
T Consensus 117 L~L~~n~i~~-~-~~l~~l~~-L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 117 LSLEHNGISD-I-NGLVHLPQ-LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EECTTSCCCC-C-GGGGGCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCcCCC-C-hhhcCCCC-CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 6666666653 2 23444443 55555555555432 233444444444444444443222 4444444444444444
Q ss_pred cccccchhhccCCCCCEEEcCCccC
Q 044615 254 FHKSIPESLSNLVKLHYLNLSNNQF 278 (571)
Q Consensus 254 l~~~~~~~l~~l~~L~~L~Ls~n~l 278 (571)
+++. + .+..+++|+.|++++|.+
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEE
T ss_pred CCCC-h-hhccCCCCCEEECcCCcc
Confidence 4321 1 234444444444444443
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=9.7e-20 Score=195.31 Aligned_cols=174 Identities=28% Similarity=0.415 Sum_probs=116.0
Q ss_pred ccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCC
Q 044615 93 IGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLS 172 (571)
Q Consensus 93 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 172 (571)
+..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+.+ +| .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 3456677777777777663 33 46667777777777777765444 6677777777777777754 23 566777777
Q ss_pred EEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccC
Q 044615 173 ILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSAN 252 (571)
Q Consensus 173 ~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 252 (571)
.|+|++|++.+ + ..+..+++ |+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|
T Consensus 113 ~L~Ls~N~l~~-l-~~l~~l~~-L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 113 SLSLEHNGISD-I-NGLVHLPQ-LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EEECTTSCCCC-C-GGGGGCTT-CSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEEecCCCCCC-C-ccccCCCc-cCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 77777777764 2 34555654 77777777777653 456667777777777777775544 667777777777777
Q ss_pred ccccccchhhccCCCCCEEEcCCccCccC
Q 044615 253 TFHKSIPESLSNLVKLHYLNLSNNQFSQK 281 (571)
Q Consensus 253 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 281 (571)
.+++. ..+..+++|+.|+|++|.+++.
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 77653 3467777777777777777654
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=4e-19 Score=166.34 Aligned_cols=156 Identities=20% Similarity=0.204 Sum_probs=102.8
Q ss_pred cEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCC-hhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCC
Q 044615 197 KVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLS-PELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSN 275 (571)
Q Consensus 197 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 275 (571)
+.+++++|.++. +|..+ ...++.|++++|++++..+ ..|..+++|+.|++++|.+++..+..|.++++|+.|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 345555555542 33322 1234556666666655433 3356667777777777777666666677777777777777
Q ss_pred ccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCC
Q 044615 276 NQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIP 355 (571)
Q Consensus 276 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~ 355 (571)
|.+++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 77776666667777777777777777777667777777777777777777777777777777777777777777765543
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.6e-19 Score=182.64 Aligned_cols=157 Identities=27% Similarity=0.216 Sum_probs=77.7
Q ss_pred CcEEEccCCcccccCCcccc-CCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcC
Q 044615 196 LKVLYLSSNHIVGEIPLGHG-MLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLS 274 (571)
Q Consensus 196 L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 274 (571)
++.|++++|.+++..+..+. .+++|+.|+|++|++++..+..|..+++|+.|+|++|.++...+..|.++++|+.|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44444444444443333343 44455555555555554444445555555555555555544444445555555555555
Q ss_pred CccCccCcchhhhcccCCCEEEccCCcCCcccchhc---cCCCCCCEEEccCCcCccccccccccCCC--CCEEECcCCc
Q 044615 275 NNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQI---CSMQSLEKLNLSHNNLSGSIPRCFEEMHW--LSCIDISYNA 349 (571)
Q Consensus 275 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~--L~~L~ls~N~ 349 (571)
+|++++..+..|..+++|+.|+|++|.+++..+..| ..+++|+.|+|++|+|++..+..|..++. ++.|++++|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 555554444455555555555555555554333333 34555555555555555444444555544 2455555555
Q ss_pred Ccc
Q 044615 350 LQG 352 (571)
Q Consensus 350 l~~ 352 (571)
+.+
T Consensus 201 ~~C 203 (361)
T 2xot_A 201 LEC 203 (361)
T ss_dssp EEC
T ss_pred ccC
Confidence 543
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=4.7e-19 Score=165.89 Aligned_cols=134 Identities=19% Similarity=0.250 Sum_probs=70.7
Q ss_pred CCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEcc
Q 044615 219 SLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLS 298 (571)
Q Consensus 219 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 298 (571)
+|+.|++++|++++..+..|..+++|+.|+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|+.|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 44444444444444444444445555555555555544444555555555555555555554444444555555555555
Q ss_pred CCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcc
Q 044615 299 HNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQG 352 (571)
Q Consensus 299 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 352 (571)
+|++++..+..|..+++|+.|+|++|++++..+..|..++.|+.|++++|++.+
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 555555555555555555555555555555555555555555555555555543
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=4.2e-19 Score=173.78 Aligned_cols=186 Identities=24% Similarity=0.349 Sum_probs=97.4
Q ss_pred EEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCc
Q 044615 126 LDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNH 205 (571)
Q Consensus 126 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~ 205 (571)
+++..+.+.+.. .+..+++|++|++++|.+... + .+..+++|++|++++|++++. +. +..+++ |+.|++++|.
T Consensus 29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~-L~~L~l~~n~ 101 (291)
T 1h6t_A 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKN-LGWLFLDENK 101 (291)
T ss_dssp HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTT-CCEEECCSSC
T ss_pred HHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCC-cc-cccCCC-CCEEECCCCc
Confidence 344444444322 234566666666666666532 2 355666666666666666532 22 444443 5555555555
Q ss_pred ccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchh
Q 044615 206 IVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNK 285 (571)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 285 (571)
+++. +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++. ..
T Consensus 102 l~~~--------------------------~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~ 151 (291)
T 1h6t_A 102 VKDL--------------------------SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TV 151 (291)
T ss_dssp CCCG--------------------------GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG
T ss_pred CCCC--------------------------hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hh
Confidence 5431 1244455555555555554432 2344555555555555555443 34
Q ss_pred hhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcc
Q 044615 286 IEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQG 352 (571)
Q Consensus 286 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 352 (571)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++. | .+..+++|+.|++++|+++.
T Consensus 152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 5555555555555555554333 55556666666666666542 2 25556666666666666554
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=4.2e-19 Score=179.55 Aligned_cols=177 Identities=31% Similarity=0.287 Sum_probs=103.0
Q ss_pred CEEecccCcCcccccccccCCCCCCEEEcccCcCccccccccc-CCCCCCeeecccCcCcccCCccccCCCCCCEEEccC
Q 044615 100 SDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFA-NLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSS 178 (571)
Q Consensus 100 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 178 (571)
+.++++++.++ .+|..+. +.++.|+|++|.|++..+..|. ++++|++|+|++|.+.+..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 34555555554 3343332 2355555555555555554454 555555555555555554445555555555566655
Q ss_pred CCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhh---hCCCCCCEEEcccCccc
Q 044615 179 NKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPEL---GSLIQLEYLDLSANTFH 255 (571)
Q Consensus 179 n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~ 255 (571)
|+++...+..|..+.+ |+.|+|++|.+++..|..|..+++|+.|+|++|+++...+..| ..+++|+.|+|++|.++
T Consensus 98 N~l~~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQA-LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcC-CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 5555433334444443 6666666666655555666666666666666666665444444 45777777777777777
Q ss_pred cccchhhccCCC--CCEEEcCCccCcc
Q 044615 256 KSIPESLSNLVK--LHYLNLSNNQFSQ 280 (571)
Q Consensus 256 ~~~~~~l~~l~~--L~~L~Ls~n~l~~ 280 (571)
...+..+..++. |+.|+|++|.+..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 665566777766 3678888887753
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=6.9e-19 Score=188.71 Aligned_cols=192 Identities=27% Similarity=0.355 Sum_probs=121.1
Q ss_pred CCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEE
Q 044615 96 MKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILD 175 (571)
Q Consensus 96 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 175 (571)
+..+..+.++.+.+....+ +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..| +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 3445566777777664433 45677788888888887643 3 47778888888888888775443 77788888888
Q ss_pred ccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccc
Q 044615 176 LSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFH 255 (571)
Q Consensus 176 L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (571)
|++|++.+ +| .+..+++ |+.|+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.
T Consensus 94 Ls~N~l~~-l~-~l~~l~~-L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 94 LDENKIKD-LS-SLKDLKK-LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp CCSSCCCC-CT-TSTTCTT-CCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred CcCCCCCC-Ch-hhccCCC-CCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 88887763 33 4555554 77777777766542 2355566666666666666643 45556666666666666665
Q ss_pred cccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCc
Q 044615 256 KSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFRE 304 (571)
Q Consensus 256 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 304 (571)
+..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 4433 55666666666666666543 235555666666666665544
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=162.63 Aligned_cols=153 Identities=21% Similarity=0.212 Sum_probs=107.0
Q ss_pred EEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCC-ccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEccc
Q 044615 173 ILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIP-LGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSA 251 (571)
Q Consensus 173 ~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 251 (571)
++++++|.++ .+|..+. ..++.|++++|.+++..+ ..+..+++|+.|++++|++++..+..|..+++|+.|+|++
T Consensus 15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5555555554 3444332 235566666666665433 3356666777777777777766666677777777777777
Q ss_pred CccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccc
Q 044615 252 NTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGS 329 (571)
Q Consensus 252 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 329 (571)
|.+++..+..|.++++|++|++++|.+++..|..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 777766666777777888888888888777777777788888888888888777777888888888888888887754
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.8e-18 Score=161.98 Aligned_cols=150 Identities=22% Similarity=0.246 Sum_probs=77.6
Q ss_pred CEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCC
Q 044615 100 SDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSN 179 (571)
Q Consensus 100 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 179 (571)
+.++++++.++ .+|..+. ++|+.|+|++|.|++..+..|..+++|++|+|++|.+.+..|..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666665 3444433 45666666666666555556666666666666666666555666666666666666666
Q ss_pred CCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCc
Q 044615 180 KLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANT 253 (571)
Q Consensus 180 ~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (571)
+++...+..|..+++ |+.|++++|.+++..|..+..+++|+.|+|++|.+++..+..|..+++|+.|++++|.
T Consensus 91 ~l~~l~~~~f~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 91 KITELPKSLFEGLFS-LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCC-CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 665322222333332 4444444444444334444444444444444444443333334444444444444443
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=2.2e-18 Score=162.40 Aligned_cols=137 Identities=24% Similarity=0.292 Sum_probs=80.1
Q ss_pred CCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEc
Q 044615 218 SSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDL 297 (571)
Q Consensus 218 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 297 (571)
++|+.|++++|.+++..|..|..+++|+.|+|++|.+....+..|..+++|+.|+|++|.+++..+..+..+++|+.|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45555555555555555555555555555555555555444444555666666666666665554555555666666666
Q ss_pred cCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCC
Q 044615 298 SHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIP 355 (571)
Q Consensus 298 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~ 355 (571)
++|+++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..+
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 666665 345555666666666666666665555556666666666666666655443
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=8.7e-22 Score=209.96 Aligned_cols=188 Identities=22% Similarity=0.216 Sum_probs=89.6
Q ss_pred cCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCc
Q 044615 118 GNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLK 197 (571)
Q Consensus 118 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~ 197 (571)
..+++|+.|+|++|.++ .+|..++++++|+.|++++|......|..+ ..+...+..|..+..+.+ |+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~-L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFST-LK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHH-HH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHh-cc
Confidence 44566666666666665 556666666666666665543110001000 001122334444444443 44
Q ss_pred EEE-ccCC-------------cccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhc
Q 044615 198 VLY-LSSN-------------HIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLS 263 (571)
Q Consensus 198 ~L~-l~~n-------------~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 263 (571)
.|+ ++.| .++...+ ..|+.|++++|.+++ +|. ++.+++|+.|+|++|.++ .+|..+.
T Consensus 413 ~L~~l~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 413 AVDPMRAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred cCcchhhcccchhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 444 3333 3322111 124555555555554 232 555555555555555554 3444555
Q ss_pred cCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCccc-chhccCCCCCCEEEccCCcCccc
Q 044615 264 NLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEI-PSQICSMQSLEKLNLSHNNLSGS 329 (571)
Q Consensus 264 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~ 329 (571)
++++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++.. |..++.+++|+.|+|++|++++.
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 55555555555555543 33 4445555555555555554443 44555555555555555555443
No 113
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=99.77 E-value=4.2e-19 Score=173.27 Aligned_cols=106 Identities=25% Similarity=0.450 Sum_probs=88.7
Q ss_pred cCCCccCeeeccCcceEEEEEcC------CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCe
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLP------TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALH 535 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 535 (571)
++|.+.+.||+|+||+||+|++. ++..||||+++.. .....++|.+|+++|++++|||||+++|+|.+++.
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~---~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~ 89 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA---SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDP 89 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC---ChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCE
Confidence 45788899999999999999842 4778999999753 23446789999999999999999999999999999
Q ss_pred eEEEEeccCCCChhhhhccCC----------CccCCCHHHHhhhc
Q 044615 536 SFVVYEYLEMGSLAMNLSNDA----------AAEQFCWTKRMNAI 570 (571)
Q Consensus 536 ~~lv~e~~~~G~L~~~l~~~~----------~~~~l~w~~r~~ia 570 (571)
.|||||||++|+|.++|+..+ ....++|.++++|+
T Consensus 90 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 134 (299)
T 4asz_A 90 LIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIA 134 (299)
T ss_dssp EEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHH
Confidence 999999999999999997542 23579999999886
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=6.4e-18 Score=159.23 Aligned_cols=134 Identities=26% Similarity=0.253 Sum_probs=68.9
Q ss_pred CCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEc
Q 044615 97 KSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDL 176 (571)
Q Consensus 97 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 176 (571)
++|++|+|++|.+++..|..|..+++|++|+|++|.++...+..|..+++|++|+|++|.+++..+..|..+++|++|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 44555555555555444555555555555555555554444444455555555555555554443444445555555555
Q ss_pred cCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCcccc
Q 044615 177 SSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHK 256 (571)
Q Consensus 177 ~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (571)
++|+++ .+|.. +..+++|+.|++++|++++..+..+..+++|+.|++++|.+..
T Consensus 120 s~N~l~-~lp~~-------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 120 CCNKLT-ELPRG-------------------------IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCC-SCCTT-------------------------GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCccc-ccCcc-------------------------cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 555544 34444 4444555555555555554444445555666666666665543
No 115
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=99.76 E-value=8.9e-19 Score=173.37 Aligned_cols=106 Identities=24% Similarity=0.441 Sum_probs=90.2
Q ss_pred cCCCccCeeeccCcceEEEEEcC------CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCe
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLP------TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALH 535 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 535 (571)
.+|...+.||+|+||+||+|+++ +++.||||+++.. .....++|.+|+++|++++|||||+++|+|.+.+.
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~---~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~ 117 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA---SESARQDFQREAELLTMLQHQHIVRFFGVCTEGRP 117 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC---SHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE
Confidence 35677789999999999999853 4788999999753 23456789999999999999999999999999999
Q ss_pred eEEEEeccCCCChhhhhccCCC------------ccCCCHHHHhhhc
Q 044615 536 SFVVYEYLEMGSLAMNLSNDAA------------AEQFCWTKRMNAI 570 (571)
Q Consensus 536 ~~lv~e~~~~G~L~~~l~~~~~------------~~~l~w~~r~~ia 570 (571)
.|||||||++|+|.++++.... ..+++|.++++|+
T Consensus 118 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 164 (329)
T 4aoj_A 118 LLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVA 164 (329)
T ss_dssp EEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHH
Confidence 9999999999999999986432 2469999999886
No 116
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=99.76 E-value=1.3e-18 Score=170.60 Aligned_cols=106 Identities=18% Similarity=0.261 Sum_probs=87.7
Q ss_pred CCCccCeeeccCcceEEEEEc------CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCee
Q 044615 463 NFDDGHCIGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS 536 (571)
Q Consensus 463 ~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 536 (571)
+++..+.||+|+||+||+|.+ .+++.||||+++..... ...++|.+|+.++++++|||||+++|+|.+.+..
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~--~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~ 104 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEG--PLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPL 104 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC---CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccCh--HHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEE
Confidence 456678899999999999985 25678999999754322 3357899999999999999999999999999999
Q ss_pred EEEEeccCCCChhhhhccCCC-------------ccCCCHHHHhhhc
Q 044615 537 FVVYEYLEMGSLAMNLSNDAA-------------AEQFCWTKRMNAI 570 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~-------------~~~l~w~~r~~ia 570 (571)
|||||||++|||.++|+.+.. ...++|.++++||
T Consensus 105 ~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 151 (308)
T 4gt4_A 105 SMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLV 151 (308)
T ss_dssp EEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHH
Confidence 999999999999999975321 2469999999886
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=1.1e-20 Score=201.53 Aligned_cols=204 Identities=21% Similarity=0.178 Sum_probs=135.8
Q ss_pred cCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCc-------------CcccccccccCCCCCCeee-cccCcCcc
Q 044615 94 GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNK-------------LSGSIPLSFANLTSLSILY-LYENSLCD 159 (571)
Q Consensus 94 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~-L~~n~l~~ 159 (571)
..+++|+.|+|++|.++ .+|..++.+++|+.|++++|. +.+.+|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45677777888887776 667777777777777776654 4455666677777777776 5555432
Q ss_pred cCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhh
Q 044615 160 SIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELG 239 (571)
Q Consensus 160 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 239 (571)
.|..+.+++|.+.. +|. . .|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++
T Consensus 424 ----------~L~~l~l~~n~i~~-l~~-----~-~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLK-MEY-----A-DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp ----------HHHHHHHHHHHHHH-HHH-----T-TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred ----------hhhhhhhhcccccc-cCc-----c-CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 22333344444431 111 1 26777777777764 444 677777777777777777 5666777
Q ss_pred CCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCc-chhhhcccCCCEEEccCCcCCcccch---hccCCCC
Q 044615 240 SLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKI-PNKIEKLIHLSELDLSHNIFREEIPS---QICSMQS 315 (571)
Q Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~ 315 (571)
.+++|+.|+|++|.+++ +| .+.++++|+.|+|++|++++.. |..+..+++|+.|+|++|.+++.+|. .+..+++
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 77777777777777775 45 6777777888888888777665 77777777888888888877765442 2334777
Q ss_pred CCEEEc
Q 044615 316 LEKLNL 321 (571)
Q Consensus 316 L~~L~L 321 (571)
|+.|++
T Consensus 562 L~~L~l 567 (567)
T 1dce_A 562 VSSILT 567 (567)
T ss_dssp CSEEEC
T ss_pred cCccCC
Confidence 887764
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=4.9e-18 Score=156.15 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=82.3
Q ss_pred cCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCE
Q 044615 94 GNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSI 173 (571)
Q Consensus 94 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 173 (571)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45566667777776666 344 4666666777777666554 2235666666666666666666555666666666666
Q ss_pred EEccCCCCCccCChhhhhccCCCcEEEccCCc-ccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccC
Q 044615 174 LDLSSNKLNGSIPLSLANLTNSLKVLYLSSNH-IVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSAN 252 (571)
Q Consensus 174 L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 252 (571)
|++++|++++..|..+..+++ |+.|++++|. ++ .+| .+..+++|+.|++++|++++. + .+..+++|+.|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~-L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPK-VNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSS-CCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCC-CCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCc
Confidence 666666666545555555543 5555555554 33 222 233444444444444444331 1 3333444444444444
Q ss_pred c
Q 044615 253 T 253 (571)
Q Consensus 253 ~ 253 (571)
.
T Consensus 192 ~ 192 (197)
T 4ezg_A 192 T 192 (197)
T ss_dssp -
T ss_pred c
Confidence 3
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=1.1e-17 Score=153.69 Aligned_cols=149 Identities=21% Similarity=0.312 Sum_probs=87.9
Q ss_pred CcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCC
Q 044615 196 LKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSN 275 (571)
Q Consensus 196 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 275 (571)
|+.|++++|.++ .+| .+..+++|++|++++|.+.. +..+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 46 L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 46 LTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp CCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred ccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 444444444444 222 34444555555555554432 23555666666666666666655566666666677777777
Q ss_pred ccCccCcchhhhcccCCCEEEccCCc-CCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcc
Q 044615 276 NQFSQKIPNKIEKLIHLSELDLSHNI-FREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQG 352 (571)
Q Consensus 276 n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 352 (571)
|.+++..+..+..+++|+.|++++|. +.. ++ .+..+++|+.|++++|.+++. + .+..+++|+.|++++|++.+
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 76666566666666777777777776 433 33 466677777777777777643 2 56667777777777776643
No 120
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=99.75 E-value=3.3e-18 Score=169.41 Aligned_cols=104 Identities=20% Similarity=0.260 Sum_probs=82.3
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
++|++.+.||+|+||+||+|+ ..+|+.||||++.+.... ....+.|.+|+++|++++|||||++++++.+.+.+||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMS-SKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCC-HHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEE
Confidence 579999999999999999999 568999999999876543 345678999999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHh
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRM 567 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~ 567 (571)
|||+||+|.++|..++. ..+++.+..
T Consensus 103 Ey~~gg~L~~~i~~~~~-~~~~e~~~~ 128 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQKG-VLFQEDQIL 128 (350)
T ss_dssp ECCTTCBHHHHHHHTTT-CCCCHHHHH
T ss_pred eCCCCCcHHHHHHHcCC-CCCCHHHHH
Confidence 99999999999975432 234444433
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=8.9e-19 Score=168.73 Aligned_cols=170 Identities=21% Similarity=0.323 Sum_probs=100.5
Q ss_pred CCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEE
Q 044615 96 MKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILD 175 (571)
Q Consensus 96 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 175 (571)
+.++..+++++|.+++. + .+..+++|++|++++|.++. ++ .+..+++|++|+|++|.+.+..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 44555666666666532 2 45566666666666666653 33 46666666666666666654333 66666666666
Q ss_pred ccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccc
Q 044615 176 LSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFH 255 (571)
Q Consensus 176 L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (571)
+++|++++ +|... . . +|+.|++++|.+++. ..+..+++|+.|++++|++++. + .+..+++|+.|++++|.++
T Consensus 92 L~~N~l~~-l~~~~-~-~-~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 92 VNRNRLKN-LNGIP-S-A-CLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CCSSCCSC-CTTCC-C-S-SCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred CCCCccCC-cCccc-c-C-cccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 66666663 33211 1 2 366666666666542 2355566666666666666643 2 4566666666666666665
Q ss_pred cccchhhccCCCCCEEEcCCccCccC
Q 044615 256 KSIPESLSNLVKLHYLNLSNNQFSQK 281 (571)
Q Consensus 256 ~~~~~~l~~l~~L~~L~Ls~n~l~~~ 281 (571)
+. ..+..+++|+.|++++|.++..
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 44 4556666666666666666543
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=2e-18 Score=166.25 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=39.6
Q ss_pred CCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEc
Q 044615 242 IQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNL 321 (571)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 321 (571)
++|+.|++++|.+++. ..+..+++|+.|++++|++++. + .+..+++|+.|++++|.+++. ..+..+++|+.|++
T Consensus 106 ~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDL 179 (263)
T ss_dssp SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEE
T ss_pred CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeC
Confidence 4455555555554432 2344555555555555555432 1 344455555555555555443 33445555555555
Q ss_pred cCCcCcc
Q 044615 322 SHNNLSG 328 (571)
Q Consensus 322 s~n~l~~ 328 (571)
++|++++
T Consensus 180 ~~N~~~~ 186 (263)
T 1xeu_A 180 TGQKCVN 186 (263)
T ss_dssp EEEEEEC
T ss_pred CCCcccC
Confidence 5555543
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1.1e-18 Score=191.79 Aligned_cols=185 Identities=25% Similarity=0.252 Sum_probs=74.7
Q ss_pred CCCEEEccCCccccCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCCEEEc
Q 044615 49 QARDTSISFDELHEKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDL 128 (571)
Q Consensus 49 ~l~~l~l~~n~l~~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 128 (571)
+++.|+|+.|.+.......++.++|+.|.+.+ ++++.|.+. ..+..|..+++|+.|+|
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~---------------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDE---------------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccC---------------------cccccccee-cChhhhccCCCCcEEEC
Confidence 35556666555553333445555555555443 223333333 34455555555556666
Q ss_pred ccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccc
Q 044615 129 STNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVG 208 (571)
Q Consensus 129 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~ 208 (571)
++|.+. .+|..+.++++|++|+|++|.++ .+|..|+.|++|++|+|++|+++ .+|..+..+.+ |+.|+|++|.++
T Consensus 232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~-L~~L~L~~N~l~- 306 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ-LKYFYFFDNMVT- 306 (727)
T ss_dssp TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT-CSEEECCSSCCC-
T ss_pred CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC-CCEEECCCCCCC-
Confidence 555555 34444445556666666666555 45555555666666666666655 45555555554 666666666554
Q ss_pred cCCccccCCCCCcEEeCccCcCcCCCChhhhCCCC-CCEEEcccCccccccch
Q 044615 209 EIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQ-LEYLDLSANTFHKSIPE 260 (571)
Q Consensus 209 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~ 260 (571)
.+|..++.+++|+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|.
T Consensus 307 ~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 34545555566666666666665555554433211 12245555555554443
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=2.2e-18 Score=189.36 Aligned_cols=224 Identities=23% Similarity=0.249 Sum_probs=74.0
Q ss_pred CCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEc
Q 044615 97 KSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDL 176 (571)
Q Consensus 97 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 176 (571)
+.++.|+|.+|.+.. .+.. .|+.++|+.|.|.+. ++..|.+. ..|+.+..+++|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~-----~l~~l~Ls~~~i~~~--------------~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQA-----LLQHKKLSQYSIDED--------------DDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCc-chhh-----HhhcCccCcccccCc--------------ccccccee-cChhhhccCCCCcEEEC
Confidence 556777777777664 2322 233444444443321 22222222 23444445555555555
Q ss_pred cCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCcccc
Q 044615 177 SSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHK 256 (571)
Q Consensus 177 ~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (571)
++|.+. .+|..++.+.. |+.|+|++|.++ .+|..++.+++|+.|+|++|.++ .+|..|+.+++|+.|+|++|.++
T Consensus 232 s~n~l~-~l~~~~~~l~~-L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~- 306 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYDF-LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT- 306 (727)
T ss_dssp TTSCCS-CCCGGGGGCCS-CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-
T ss_pred CCCCCC-CCChhhcCCCC-CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-
Confidence 555554 44444444443 555555555554 44444555555555555555555 34555555555555555555554
Q ss_pred ccchhhccCCCCCEEEcCCccCccCcchhhhcccC-CCEEEccCCcCCcccchhccCCCCCCEEEccCC--------cCc
Q 044615 257 SIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIH-LSELDLSHNIFREEIPSQICSMQSLEKLNLSHN--------NLS 327 (571)
Q Consensus 257 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--------~l~ 327 (571)
.+|..|..+++|+.|+|++|.+++.+|..+..+.. +..++|++|.+.+.+|. .|+.|++++| .+.
T Consensus 307 ~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~ 380 (727)
T 4b8c_D 307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQ 380 (727)
T ss_dssp CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C--------------------
T ss_pred ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCcc
Confidence 34445555566666666666665555554433221 12345566666555543 2333444444 333
Q ss_pred cccccccccCCCCCEEECcCCcCcc
Q 044615 328 GSIPRCFEEMHWLSCIDISYNALQG 352 (571)
Q Consensus 328 ~~~p~~~~~l~~L~~L~ls~N~l~~ 352 (571)
+..+..+..+..+....+++|-+.+
T Consensus 381 ~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 381 QSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ---------------------CCCG
T ss_pred ccccchhhcccccceeeeecccccc
Confidence 3333444455555666667776653
No 125
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=161.54 Aligned_cols=103 Identities=30% Similarity=0.343 Sum_probs=86.6
Q ss_pred cCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEEe
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYE 541 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 541 (571)
+++.+.+.||+|+||+||+|++.. .||||+++.... .....+.|.+|++++++++|||||+++|+|. .+.+|||||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~-~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-~~~~~iVmE 111 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDP-TPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQ 111 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-CCeEEEEEE
Confidence 467788999999999999998643 599999975443 3345678999999999999999999999885 456899999
Q ss_pred ccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 542 YLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 542 ~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||+||+|.++|+.... .++|.++++|+
T Consensus 112 y~~gGsL~~~l~~~~~--~l~~~~~~~i~ 138 (307)
T 3omv_A 112 WCEGSSLYKHLHVQET--KFQMFQLIDIA 138 (307)
T ss_dssp CCSSCBHHHHHHTSCC--CCCHHHHHHHH
T ss_pred cCCCCCHHHHHhhcCC--CCCHHHHHHHH
Confidence 9999999999975433 58999998876
No 126
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=99.72 E-value=2.8e-18 Score=167.11 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=83.0
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
++|++.+.||+|+||+||+|+ ..+|+.||||++.+.........+.+.+|+++|++++|||||++++++++.+.+|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 579999999999999999999 5689999999997543222233577999999999999999999999999999999999
Q ss_pred eccCCCChhhhhccC
Q 044615 541 EYLEMGSLAMNLSND 555 (571)
Q Consensus 541 e~~~~G~L~~~l~~~ 555 (571)
|||+||+|.++|++.
T Consensus 112 Ey~~gG~L~~~i~~~ 126 (311)
T 4aw0_A 112 SYAKNGELLKYIRKI 126 (311)
T ss_dssp CCCTTEEHHHHHHHH
T ss_pred ecCCCCCHHHHHHHc
Confidence 999999999999854
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.7e-17 Score=151.85 Aligned_cols=131 Identities=24% Similarity=0.287 Sum_probs=82.7
Q ss_pred CcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCCh-hhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcC
Q 044615 196 LKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSP-ELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLS 274 (571)
Q Consensus 196 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 274 (571)
-+.+++++|.++ .+|..+. .+++.|++++|.+++..+. .+..+++|+.|+|++|.+++..|..|.++++|+.|+|+
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 356777777775 3444332 2667777777766655443 36666666666666666666666666666666666666
Q ss_pred CccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccc
Q 044615 275 NNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGS 329 (571)
Q Consensus 275 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 329 (571)
+|++++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 6666665555566666666666666666666666666666666666666666544
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.8e-17 Score=165.33 Aligned_cols=235 Identities=14% Similarity=0.072 Sum_probs=115.0
Q ss_pred CCCCCEEecccCcCc--ccccccccCCCCCCEEEcccCcCcccccccccC--------CCCCCeeecccCcCcccCCccc
Q 044615 96 MKSLSDLQLSENILN--GSIPLALGNLTNLVVLDLSTNKLSGSIPLSFAN--------LTSLSILYLYENSLCDSIPKEI 165 (571)
Q Consensus 96 l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~l 165 (571)
+++|++|||++|++. ...+.. ++.+..+.+..|. +.+..|.+ +++|+.|+|.+ .+....+.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCcccc---ccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 677888888888776 222211 2223444444442 33445556 77777777776 6665556667
Q ss_pred cCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcc----cccCCccccCCCCCc-EEeCccCcCcCCCChh---
Q 044615 166 GNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHI----VGEIPLGHGMLSSLI-QLTLNNNELSGQLSPE--- 237 (571)
Q Consensus 166 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~----~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~--- 237 (571)
.++++|+.|++.+|.+....+..|..... +..+.+..+.. .......|..+..|+ .+.+.... .++..
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~-l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~ 196 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVT-AIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMK 196 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTC-EEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHH
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCc-eEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhh
Confidence 77777777777777776444444544332 44444433211 111122333334444 22222111 01111
Q ss_pred ------------------------h-hCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCC
Q 044615 238 ------------------------L-GSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHL 292 (571)
Q Consensus 238 ------------------------~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 292 (571)
+ ..+++|+.++|++|.++...+.+|.++++|+.+++++| ++...+..|.++.+|
T Consensus 197 ~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L 275 (329)
T 3sb4_A 197 AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL 275 (329)
T ss_dssp TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred cccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc
Confidence 0 11445555555555454444444555555555555554 443444445555555
Q ss_pred C-EEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEE
Q 044615 293 S-ELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCI 343 (571)
Q Consensus 293 ~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 343 (571)
+ .+++.+ .++.+.+..|.++++|+.+++++|.++.+.+.+|.++++|+.+
T Consensus 276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 276 AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 5 555544 3444444445555555555555555554444455555555444
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=3.5e-17 Score=149.69 Aligned_cols=129 Identities=26% Similarity=0.346 Sum_probs=65.3
Q ss_pred CEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCc-cccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcc
Q 044615 172 SILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPL-GHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLS 250 (571)
Q Consensus 172 ~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 250 (571)
+++++++|+++ .+|..+.. +|+.|++++|.+++..+. .++.+++|+.|++++|++++..|..|..+++|+.|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 44555555553 34443321 255555555555443332 24455555555555555555445555555555555555
Q ss_pred cCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCc
Q 044615 251 ANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFRE 304 (571)
Q Consensus 251 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 304 (571)
+|.+++..+..|.++++|+.|++++|++++..|..+..+++|+.|+|++|.+.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 555555444445555555555555555555445555555555555555555543
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=5.6e-17 Score=161.75 Aligned_cols=220 Identities=11% Similarity=0.051 Sum_probs=150.3
Q ss_pred CCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcC----cccCCccccCCCCC
Q 044615 96 MKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSL----CDSIPKEIGNMNSL 171 (571)
Q Consensus 96 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~l~~l~~L 171 (571)
+++|+.|+|.+ .++.+.+.+|.++++|+.|++.+|.+..+.+.+|..+.++..+.+..+.. .......|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 67777777766 66655566677777777777777776666666666666665555544221 11223345555555
Q ss_pred C-EEEccCCCCCccCChhhhhc---cCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEE
Q 044615 172 S-ILDLSSNKLNGSIPLSLANL---TNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYL 247 (571)
Q Consensus 172 ~-~L~L~~n~l~~~~p~~~~~l---~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 247 (571)
+ .+.+.... .++..+... ..++..+.+.++-...........+++|+.|++++|+++...+..|.++++|+.+
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 5 44443321 223322211 1235566655542211111111236899999999999998888889999999999
Q ss_pred EcccCccccccchhhccCCCCC-EEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEc
Q 044615 248 DLSANTFHKSIPESLSNLVKLH-YLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNL 321 (571)
Q Consensus 248 ~L~~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 321 (571)
++.+| +....+.+|.++++|+ .+++.+ .++...+..|.++++|+.+++++|.+..+.+..|.++++|+.++.
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99998 7777788899999999 999998 777777889999999999999999999888889999999998864
No 131
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=99.70 E-value=3e-17 Score=157.59 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=81.6
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
++|++.+.||+|+||+||+|+ ..+|+.||||++.+.........+.+.+|++++++++|||||++++++.+.+..|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 689999999999999999999 5689999999998765444445678999999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
||| +|+|.+++.+++ .++..+...+
T Consensus 93 Ey~-~g~L~~~l~~~~---~l~e~~~~~~ 117 (275)
T 3hyh_A 93 EYA-GNELFDYIVQRD---KMSEQEARRF 117 (275)
T ss_dssp ECC-CEEHHHHHHHSC---SCCHHHHHHH
T ss_pred eCC-CCCHHHHHHHcC---CCCHHHHHHH
Confidence 999 689999997543 3555544433
No 132
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=99.70 E-value=1.9e-17 Score=163.72 Aligned_cols=101 Identities=26% Similarity=0.352 Sum_probs=85.7
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
..|+..+.||+|+||+||+|+ ..+|+.||||++....... .+.+.+|+++|++++|||||+++++|.+.+.+||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~---~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivm 150 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR---RELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVM 150 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSS---GGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhH---HHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 458999999999999999999 5689999999997543332 356889999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
|||+||+|.+++.+. .+++.+...|
T Consensus 151 Ey~~gg~L~~~l~~~----~l~e~~~~~~ 175 (346)
T 4fih_A 151 EFLEGGALTDIVTHT----RMNEEQIAAV 175 (346)
T ss_dssp CCCTTEEHHHHHHHS----CCCHHHHHHH
T ss_pred eCCCCCcHHHHHHcC----CCCHHHHHHH
Confidence 999999999999753 3566554444
No 133
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=99.70 E-value=4.5e-17 Score=159.09 Aligned_cols=105 Identities=20% Similarity=0.348 Sum_probs=84.5
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCC------
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHAL------ 534 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~------ 534 (571)
++|++.+.||+|+||+||+|+ ..+|+.||||+++... .....+.+.+|+++|++++|||||++++++.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~--~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~ 82 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN--RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQ 82 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS--SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccc
Confidence 468999999999999999999 5589999999997543 2344578999999999999999999999997654
Q ss_pred ------eeEEEEeccCCCChhhhhccCCCccCCCHHHHhh
Q 044615 535 ------HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMN 568 (571)
Q Consensus 535 ------~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ 568 (571)
.+|+|||||++|+|.+++.........+|.....
T Consensus 83 ~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~ 122 (299)
T 4g31_A 83 PSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLH 122 (299)
T ss_dssp ----CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHH
T ss_pred ccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHH
Confidence 3799999999999999998765544556554433
No 134
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=99.69 E-value=5.1e-17 Score=157.33 Aligned_cols=102 Identities=23% Similarity=0.192 Sum_probs=83.5
Q ss_pred CccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEe----CCeeEEE
Q 044615 465 DDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSH----ALHSFVV 539 (571)
Q Consensus 465 ~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~----~~~~~lv 539 (571)
...+.||+|+||+||+|. ..+++.||||++...... ....+.|.+|++++++++|||||+++++|.+ ...+|||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lv 107 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT-KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCC-HHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEE
Confidence 556789999999999999 558999999999754433 2446789999999999999999999999976 3458999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||||+||+|.+++++.+ .+++.....|+
T Consensus 108 mEy~~gg~L~~~l~~~~---~l~~~~~~~~~ 135 (290)
T 3fpq_A 108 TELMTSGTLKTYLKRFK---VMKIKVLRSWC 135 (290)
T ss_dssp EECCCSCBHHHHHHHHS---SCCHHHHHHHH
T ss_pred EeCCCCCCHHHHHHhcC---CCCHHHHHHHH
Confidence 99999999999998543 46776665543
No 135
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=99.68 E-value=5.5e-17 Score=164.53 Aligned_cols=101 Identities=26% Similarity=0.352 Sum_probs=85.8
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
+.|+..+.||+|+||+||+|+ ..+|+.||||++....... .+.+.+|+++|++++|||||+++++|.+.+.+||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~---~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVm 227 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR---RELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVM 227 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSS---GGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhH---HHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEE
Confidence 569999999999999999999 5689999999997654333 356889999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
|||+||+|.++++.. .+++.+...|
T Consensus 228 Ey~~gG~L~~~i~~~----~l~e~~~~~~ 252 (423)
T 4fie_A 228 EFLEGGALTDIVTHT----RMNEEQIAAV 252 (423)
T ss_dssp ECCTTEEHHHHHHHS----CCCHHHHHHH
T ss_pred eCCCCCcHHHHHhcc----CCCHHHHHHH
Confidence 999999999999743 2555544433
No 136
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=99.67 E-value=7.7e-17 Score=158.89 Aligned_cols=99 Identities=22% Similarity=0.234 Sum_probs=84.2
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.+.|+..+.||+|+||+||+|+ ..+|+.||||+++..... .+|+.++++++|||||++++++.+.+.+|||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~--------~~E~~il~~l~HpnIV~l~~~~~~~~~~~iv 128 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR--------VEELVACAGLSSPRIVPLYGAVREGPWVNIF 128 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC--------THHHHTTTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHhH--------HHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 3457888899999999999999 568999999999764322 3799999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||||+||+|.++|++.+ .+++.+...|+
T Consensus 129 mEy~~gg~L~~~l~~~~---~l~e~~~~~~~ 156 (336)
T 4g3f_A 129 MELLEGGSLGQLIKQMG---CLPEDRALYYL 156 (336)
T ss_dssp ECCCTTCBHHHHHHHHS---SCCHHHHHHHH
T ss_pred EeccCCCcHHHHHHHcC---CCCHHHHHHHH
Confidence 99999999999998543 46776665553
No 137
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=2.7e-16 Score=140.52 Aligned_cols=135 Identities=23% Similarity=0.281 Sum_probs=95.3
Q ss_pred CCCcEEeCccCcCc-CCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEE
Q 044615 218 SSLIQLTLNNNELS-GQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELD 296 (571)
Q Consensus 218 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 296 (571)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 45565666677777777777777654 5667777777777777777766666666677777777
Q ss_pred ccCCcCCccc-chhccCCCCCCEEEccCCcCccccc---cccccCCCCCEEECcCCcCcccC
Q 044615 297 LSHNIFREEI-PSQICSMQSLEKLNLSHNNLSGSIP---RCFEEMHWLSCIDISYNALQGLI 354 (571)
Q Consensus 297 Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~ls~N~l~~~~ 354 (571)
+++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+...+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 7777776642 2567777888888888888876554 46777888888888888776543
No 138
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.66 E-value=7.8e-17 Score=158.14 Aligned_cols=99 Identities=26% Similarity=0.267 Sum_probs=80.8
Q ss_pred CCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCC----eeEE
Q 044615 463 NFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHAL----HSFV 538 (571)
Q Consensus 463 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~----~~~l 538 (571)
+|...+.||+|+||+||+|++ +|+.||||++.... .....+.+|+..+.+++|||||+++|+|.+.+ .+||
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~----~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~l 78 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE----ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL 78 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGG----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc----hhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEE
Confidence 577888999999999999997 58999999986421 11223445666678899999999999998754 5799
Q ss_pred EEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 539 VYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||||++|+|.++|++. .++|..+++|+
T Consensus 79 V~Ey~~~gsL~~~l~~~----~l~~~~~~~i~ 106 (303)
T 3hmm_A 79 VSDYHEHGSLFDYLNRY----TVTVEGMIKLA 106 (303)
T ss_dssp EEECCTTCBHHHHHHHC----CBCHHHHHHHH
T ss_pred EecCCCCCcHHHHHHhC----CCCHHHHHHHH
Confidence 99999999999999753 48999998875
No 139
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=1.1e-15 Score=136.53 Aligned_cols=132 Identities=27% Similarity=0.249 Sum_probs=67.2
Q ss_pred CCCCEEEcccCcCc-ccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEE
Q 044615 121 TNLVVLDLSTNKLS-GSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVL 199 (571)
Q Consensus 121 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L 199 (571)
++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|++.+.+|..+..+++ |+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN-LTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT-CCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC-CCEE
Confidence 34555555555544 34444455555555555555555433 44555555555555555555444444444443 5555
Q ss_pred EccCCcccccC-CccccCCCCCcEEeCccCcCcCCCC---hhhhCCCCCCEEEcccCccc
Q 044615 200 YLSSNHIVGEI-PLGHGMLSSLIQLTLNNNELSGQLS---PELGSLIQLEYLDLSANTFH 255 (571)
Q Consensus 200 ~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~ 255 (571)
++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55555554321 1344445555555555555554333 34555555555555555543
No 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=4.6e-16 Score=135.99 Aligned_cols=127 Identities=24% Similarity=0.307 Sum_probs=79.5
Q ss_pred CCCcEEeCccCcCc-CCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEE
Q 044615 218 SSLIQLTLNNNELS-GQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELD 296 (571)
Q Consensus 218 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 296 (571)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555555 34455555566666666666666543 4556666666666666666655666666666677777
Q ss_pred ccCCcCCcc-cchhccCCCCCCEEEccCCcCccccc---cccccCCCCCEEECc
Q 044615 297 LSHNIFREE-IPSQICSMQSLEKLNLSHNNLSGSIP---RCFEEMHWLSCIDIS 346 (571)
Q Consensus 297 Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~ls 346 (571)
+++|.+++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.||++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777766653 23566777777777777777776554 466777777777765
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=1.5e-14 Score=147.49 Aligned_cols=248 Identities=13% Similarity=0.113 Sum_probs=192.1
Q ss_pred CCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEE
Q 044615 95 NMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSIL 174 (571)
Q Consensus 95 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 174 (571)
.+..++.+.+.+ .++.+...+|.+. +|+.+.+..+ ++.+...+|.+. +|+.+.+.+ .+....+..|.++++|+.+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 447788888864 4665667788774 7999998776 676777788874 699999875 6666667788999999999
Q ss_pred EccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCcc
Q 044615 175 DLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTF 254 (571)
Q Consensus 175 ~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (571)
++..|+++ .++...+... +|+.+.+..+ +......+|.++++|+.+++..+ +.......|.+ .+|+.+.+. +.+
T Consensus 186 ~l~~n~l~-~I~~~aF~~~-~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 186 DLSKTKIT-KLPASTFVYA-GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp ECTTSCCS-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred ecCCCcce-EechhhEeec-ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 99988888 4555444455 4999999754 66666778888999999999875 55556667777 789999994 456
Q ss_pred ccccchhhccCCCCCEEEcCCccCc-----cCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccc
Q 044615 255 HKSIPESLSNLVKLHYLNLSNNQFS-----QKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGS 329 (571)
Q Consensus 255 ~~~~~~~l~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 329 (571)
......+|.++++|+.+.+.+|.+. ...+..|.++++|+.++|. +.+..+....|.++++|+.+.|..| ++.+
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 6666788999999999999888765 3556788899999999998 4577777788999999999999554 7777
Q ss_pred cccccccCCCCCEEECcCCcCcccCCC
Q 044615 330 IPRCFEEMHWLSCIDISYNALQGLIPN 356 (571)
Q Consensus 330 ~p~~~~~l~~L~~L~ls~N~l~~~~~~ 356 (571)
.+.+|.++ .|+.+++++|.+....+.
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 78899999 899999999977665443
No 142
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=99.63 E-value=5e-17 Score=158.24 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=79.2
Q ss_pred cCCCccCeeeccCcceEEEEEc----CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL----PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSF 537 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 537 (571)
++|++.+.||+|+||+||+|+. .+++.||||++++..... ....++.+|+++|++++|||||++++++.+.+..|
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ 102 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKV-RDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLY 102 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEE-EECC------CCCCCCCCTTEECEEEEEEETTEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcCh-HHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEE
Confidence 4699999999999999999973 257899999997643222 22346889999999999999999999999999999
Q ss_pred EEEeccCCCChhhhhccCCCccCCCHHHHhh
Q 044615 538 VVYEYLEMGSLAMNLSNDAAAEQFCWTKRMN 568 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ 568 (571)
+|||||+||+|.++|.+.+ .++..+...
T Consensus 103 ivmEy~~gg~L~~~l~~~~---~l~e~~~~~ 130 (304)
T 3ubd_A 103 LILDFLRGGDLFTRLSKEV---MFTEEDVKF 130 (304)
T ss_dssp EEECCCTTCEEHHHHHHHC---CCCHHHHHH
T ss_pred EEEEcCCCCCHHHHHHhcC---CCCHHHHHH
Confidence 9999999999999998543 355544433
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=2.6e-15 Score=137.21 Aligned_cols=110 Identities=30% Similarity=0.353 Sum_probs=67.7
Q ss_pred CCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEc
Q 044615 242 IQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNL 321 (571)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 321 (571)
++|+.|++++|.++ .+|..+.++++|+.|++++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 34555555555554 34455556666666666666666555555666666666666666666655556666666666666
Q ss_pred cCCcCccccccccccCCCCCEEECcCCcCcc
Q 044615 322 SHNNLSGSIPRCFEEMHWLSCIDISYNALQG 352 (571)
Q Consensus 322 s~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 352 (571)
++|+++...+..|..+++|+.|++++|++.+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 6666665555566666666666666666654
No 144
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=99.62 E-value=4.4e-16 Score=155.34 Aligned_cols=114 Identities=20% Similarity=0.302 Sum_probs=90.5
Q ss_pred HHHHHHccCCCccCeeeccCcceEEEEEcC------CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCC-CCcccEE
Q 044615 455 EEIIRATNNFDDGHCIGNGGQGSVYKAKLP------TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH-RNIVKFY 527 (571)
Q Consensus 455 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H-~niv~l~ 527 (571)
.++....++|++.+.||+|+||+||+|... +++.||||.+..... ....+.|.+|+++|++++| ||||+++
T Consensus 57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~--~~~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT--HSEHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred cccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccC--hHHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 344444567999999999999999999842 235799999975432 2345789999999999966 8999999
Q ss_pred EEEEeC-CeeEEEEeccCCCChhhhhccCCC-------------ccCCCHHHHhhhc
Q 044615 528 GFCSHA-LHSFVVYEYLEMGSLAMNLSNDAA-------------AEQFCWTKRMNAI 570 (571)
Q Consensus 528 ~~~~~~-~~~~lv~e~~~~G~L~~~l~~~~~-------------~~~l~w~~r~~ia 570 (571)
|+|.+. +.+|||||||++|+|.++|+.... ...++|.+++.|+
T Consensus 135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 191 (353)
T 4ase_A 135 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS 191 (353)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHH
T ss_pred EEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHH
Confidence 999764 568999999999999999975321 2458999888775
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=3.3e-14 Score=144.86 Aligned_cols=246 Identities=12% Similarity=0.093 Sum_probs=144.2
Q ss_pred cccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCC
Q 044615 92 EIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSL 171 (571)
Q Consensus 92 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 171 (571)
.|.++ +|+.+.+..+ ++.+...+|.+ .+|+.+.+.. .+..+.+.+|.++++|+.+++.+|.+.......|. ..+|
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L 205 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGI 205 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-eccc
Confidence 34443 5666666554 55455556665 3577776664 45555556666677777777766666554444444 4667
Q ss_pred CEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEccc
Q 044615 172 SILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSA 251 (571)
Q Consensus 172 ~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 251 (571)
+.+.+..+ +...-...|..+.+ |+.+++..| ++.....+|.. .+|+.+.+. +.+.......|.++++|+.+++.+
T Consensus 206 ~~l~lp~~-l~~I~~~aF~~~~~-L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 206 EEVLLPVT-LKEIGSQAFLKTSQ-LKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp SEEECCTT-CCEECTTTTTTCTT-CCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEES
T ss_pred CEEEeCCc-hheehhhHhhCCCC-CCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCC
Confidence 77766533 44333344555544 666766654 34344445555 566666663 345545556666667777777666
Q ss_pred Cccc-----cccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcC
Q 044615 252 NTFH-----KSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNL 326 (571)
Q Consensus 252 n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 326 (571)
|.+. ...+.+|.+|++|+.+.+.+ .++......|.++.+|+.++|..| ++.+...+|.++ +|+.+++++|.+
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 5543 24455666667777777663 355555566666667777776443 555555566666 677777777666
Q ss_pred ccccccccccCC-CCCEEECcCCcC
Q 044615 327 SGSIPRCFEEMH-WLSCIDISYNAL 350 (571)
Q Consensus 327 ~~~~p~~~~~l~-~L~~L~ls~N~l 350 (571)
....+..|..++ .+..|.+..+.+
T Consensus 358 ~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 358 PQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cccccccccCCCCCccEEEeCHHHH
Confidence 655555666553 455665555443
No 146
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.5e-15 Score=132.68 Aligned_cols=125 Identities=23% Similarity=0.186 Sum_probs=85.4
Q ss_pred CcEEEccCCccc-ccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcC
Q 044615 196 LKVLYLSSNHIV-GEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLS 274 (571)
Q Consensus 196 L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 274 (571)
|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|+.|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 666666666665 45555566666677777777766654 556667777777777777766566666667777777777
Q ss_pred CccCccC-cchhhhcccCCCEEEccCCcCCcccc---hhccCCCCCCEEEcc
Q 044615 275 NNQFSQK-IPNKIEKLIHLSELDLSHNIFREEIP---SQICSMQSLEKLNLS 322 (571)
Q Consensus 275 ~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls 322 (571)
+|.+++. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777653 23567777777777777777766554 467777777777765
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=4e-15 Score=134.03 Aligned_cols=114 Identities=23% Similarity=0.242 Sum_probs=65.8
Q ss_pred CCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEc
Q 044615 242 IQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNL 321 (571)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 321 (571)
++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 34555555555555444444555555555555555555444444555566666666666665555555566666666666
Q ss_pred cCCcCccccccccccCCCCCEEECcCCcCcccCC
Q 044615 322 SHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIP 355 (571)
Q Consensus 322 s~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~ 355 (571)
++|.+++..+..|..+++|+.|++++|++++.+|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6666665555555666666666666666665444
No 148
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=7.6e-15 Score=134.08 Aligned_cols=128 Identities=25% Similarity=0.299 Sum_probs=94.0
Q ss_pred cEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCc
Q 044615 197 KVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNN 276 (571)
Q Consensus 197 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 276 (571)
+.+++++|.++ .+|..+ .++|+.|++++|.++ .+|..|..+++|+.|+|++|.+++..+..|.++++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45556666555 334332 246677777777776 45567777778888888888877776777788888888888888
Q ss_pred cCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCcc
Q 044615 277 QFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSG 328 (571)
Q Consensus 277 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 328 (571)
.+++..+..|..+++|+.|+|++|.++...+..|..+++|+.|+|++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8887777778888888888888888887666678888888888888888763
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=8.2e-15 Score=132.01 Aligned_cols=133 Identities=27% Similarity=0.298 Sum_probs=95.7
Q ss_pred CcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCC
Q 044615 196 LKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSN 275 (571)
Q Consensus 196 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 275 (571)
.+.+++++|.++. +|..+ .++|+.|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3455666665552 33222 25677777777777765556667777788888888777766666677788888888888
Q ss_pred ccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccc
Q 044615 276 NQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIP 331 (571)
Q Consensus 276 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 331 (571)
|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88877666667788888888888888877666667788888888888888876554
No 150
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=99.57 E-value=5.8e-15 Score=149.85 Aligned_cols=103 Identities=21% Similarity=0.321 Sum_probs=84.0
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC------C
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA------L 534 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------~ 534 (571)
++|++.+.||+|+||+||+|+ ..+|+.||||++...... ....+.+.+|+++|++++|||||++++++... +
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~-~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~ 132 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDV-VTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK 132 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSS-HHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccc-hHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence 469999999999999999999 568999999999765433 34467789999999999999999999998643 5
Q ss_pred eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 535 HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
.+|||||||+ |+|.+++...+ .+++.....|
T Consensus 133 ~~~ivmE~~~-g~L~~~i~~~~---~l~~~~~~~~ 163 (398)
T 4b99_A 133 SVYVVLDLME-SDLHQIIHSSQ---PLTLEHVRYF 163 (398)
T ss_dssp CEEEEEECCS-EEHHHHHTSSS---CCCHHHHHHH
T ss_pred EEEEEEeCCC-CCHHHHHHhcC---CCCHHHHHHH
Confidence 7899999996 68999997543 4666554443
No 151
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.57 E-value=4.6e-15 Score=158.13 Aligned_cols=100 Identities=17% Similarity=0.323 Sum_probs=85.6
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
++|++.+.||+|+||+||+|. ..+|+.||||++.... ....+.+.+|+++|+.++|||||+++++|.+...+||||
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~---~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~ 233 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH---ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIY 233 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS---HHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccc---hhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEE
Confidence 579999999999999999999 5689999999997543 234577899999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHH
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKR 566 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r 566 (571)
|||+||+|.++|.++.. .+++.+.
T Consensus 234 E~~~gg~L~~~i~~~~~--~l~e~~~ 257 (573)
T 3uto_A 234 EFMSGGELFEKVADEHN--KMSEDEA 257 (573)
T ss_dssp ECCCCCBHHHHHTCTTS--CEEHHHH
T ss_pred eecCCCcHHHHHHHhCC--CCCHHHH
Confidence 99999999999975433 3444443
No 152
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.5e-14 Score=130.05 Aligned_cols=133 Identities=21% Similarity=0.230 Sum_probs=96.2
Q ss_pred ccCCCCCcEEeCccCcCcCCCChhhhCC-CCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCC
Q 044615 214 HGMLSSLIQLTLNNNELSGQLSPELGSL-IQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHL 292 (571)
Q Consensus 214 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 292 (571)
+..+.+|+.|++++|+++.. +. +..+ ++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 44566777777777777743 43 3333 4788888888887754 567778888888888888876555556778888
Q ss_pred CEEEccCCcCCcccch--hccCCCCCCEEEccCCcCcccccc----ccccCCCCCEEECcCCcCcc
Q 044615 293 SELDLSHNIFREEIPS--QICSMQSLEKLNLSHNNLSGSIPR----CFEEMHWLSCIDISYNALQG 352 (571)
Q Consensus 293 ~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~ls~N~l~~ 352 (571)
+.|++++|.+.. +|. .+..+++|+.|++++|+++. .|. .+..++.|+.||++.|....
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 888888888854 444 67788888888888888874 454 37788888888888887643
No 153
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.5e-14 Score=130.23 Aligned_cols=134 Identities=21% Similarity=0.178 Sum_probs=72.2
Q ss_pred ccCCCCCCEEecccCcCcccccccccCCC-CCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCC
Q 044615 93 IGNMKSLSDLQLSENILNGSIPLALGNLT-NLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSL 171 (571)
Q Consensus 93 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 171 (571)
+.++.+|++|++++|.++. +|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4456667777777776663 333 33333 666666666666643 455666666666666666654433334556666
Q ss_pred CEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCCh----hhhCCCCCCEE
Q 044615 172 SILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSP----ELGSLIQLEYL 247 (571)
Q Consensus 172 ~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L 247 (571)
++|++++|++. .+|. ...+..+++|+.|++++|.+.. .|. .+..+++|+.|
T Consensus 91 ~~L~L~~N~i~-~~~~-----------------------~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 91 TELILTNNSLV-ELGD-----------------------LDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp CEEECCSCCCC-CGGG-----------------------GGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEE
T ss_pred CEEECCCCcCC-cchh-----------------------hHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCcccee
Confidence 66666666554 3333 0123334444444444444442 222 25566666666
Q ss_pred EcccCccc
Q 044615 248 DLSANTFH 255 (571)
Q Consensus 248 ~L~~n~l~ 255 (571)
+++.|...
T Consensus 146 d~~~n~~~ 153 (176)
T 1a9n_A 146 DFQKVKLK 153 (176)
T ss_dssp TTEECCHH
T ss_pred CCCcCCHH
Confidence 66666554
No 154
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=3.5e-16 Score=143.82 Aligned_cols=149 Identities=23% Similarity=0.264 Sum_probs=98.6
Q ss_pred CcEEEccCCcccccCCc------cccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCC
Q 044615 196 LKVLYLSSNHIVGEIPL------GHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLH 269 (571)
Q Consensus 196 L~~L~l~~n~~~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 269 (571)
++.++++.+.+.+..|. .+..+++|+.|++++|.+.+ +| .+..+++|+.|++++|.++ .+|..+..+++|+
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence 44444444444443333 55566666777777776665 44 6667777777777777776 4566666667777
Q ss_pred EEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccc-hhccCCCCCCEEEccCCcCcccccc----------ccccCC
Q 044615 270 YLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIP-SQICSMQSLEKLNLSHNNLSGSIPR----------CFEEMH 338 (571)
Q Consensus 270 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~----------~~~~l~ 338 (571)
.|++++|.+++ +| .+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|++++..|. .+..++
T Consensus 97 ~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 97 ELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp EEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred EEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 77787777765 33 56777778888888887765332 4677788888888888888766554 267778
Q ss_pred CCCEEECcCCcCc
Q 044615 339 WLSCIDISYNALQ 351 (571)
Q Consensus 339 ~L~~L~ls~N~l~ 351 (571)
+|+.|| +|.++
T Consensus 175 ~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 175 NLKKLD--GMPVD 185 (198)
T ss_dssp SCSEEC--CGGGT
T ss_pred CcEEEC--CcccC
Confidence 888776 55554
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=2.5e-16 Score=144.83 Aligned_cols=87 Identities=29% Similarity=0.307 Sum_probs=45.8
Q ss_pred ccCCCCCCEEecccCcCcccccc------cccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCcccc
Q 044615 93 IGNMKSLSDLQLSENILNGSIPL------ALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIG 166 (571)
Q Consensus 93 ~~~l~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 166 (571)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+.++++|++|++++|.+. .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 44456666777777766665554 45555555555555555543 33 4555555555555555554 2343344
Q ss_pred CCCCCCEEEccCCCCC
Q 044615 167 NMNSLSILDLSSNKLN 182 (571)
Q Consensus 167 ~l~~L~~L~L~~n~l~ 182 (571)
.+++|++|++++|+++
T Consensus 91 ~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 91 VADTLEELWISYNQIA 106 (198)
T ss_dssp HHHHCSEEEEEEEECC
T ss_pred cCCcCCEEECcCCcCC
Confidence 4444444444444444
No 156
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=99.51 E-value=1.4e-14 Score=143.89 Aligned_cols=113 Identities=31% Similarity=0.548 Sum_probs=96.4
Q ss_pred HHHHHHccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCC
Q 044615 455 EEIIRATNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHAL 534 (571)
Q Consensus 455 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 534 (571)
.++...+++|+..+.||+|+||.||+|..++++.||||++..... ...+.+.+|++++++++||||+++++++.+.+
T Consensus 32 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 108 (321)
T 2qkw_B 32 VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESS---QGIEEFETEIETLSFCRHPHLVSLIGFCDERN 108 (321)
T ss_dssp SCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCS---SHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT
T ss_pred HHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccCh---HHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC
Confidence 344556788999999999999999999987899999999876532 23577999999999999999999999999999
Q ss_pred eeEEEEeccCCCChhhhhccCCC-ccCCCHHHHhhhc
Q 044615 535 HSFVVYEYLEMGSLAMNLSNDAA-AEQFCWTKRMNAI 570 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~~~-~~~l~w~~r~~ia 570 (571)
..|+||||+++|+|.+++..... ...++|..++.|+
T Consensus 109 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~ 145 (321)
T 2qkw_B 109 EMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEIC 145 (321)
T ss_dssp CCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHH
T ss_pred eEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHH
Confidence 99999999999999999976432 3468898887765
No 157
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=99.51 E-value=9.4e-15 Score=155.18 Aligned_cols=96 Identities=19% Similarity=0.181 Sum_probs=77.8
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHH---HHHHHHHhhcCCCCcccEEEEEEeCCee
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEF---LNEVNALTKIRHRNIVKFYGFCSHALHS 536 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~---~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 536 (571)
.++|++.++||+|+||+||+|+ ..+|+.||||++.+...........+ ..++.+++.++|||||+++++|.+.+.+
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 3579999999999999999999 56899999999975322111112223 3446777888999999999999999999
Q ss_pred EEEEeccCCCChhhhhccCC
Q 044615 537 FVVYEYLEMGSLAMNLSNDA 556 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~ 556 (571)
|+|||||+||+|.++|.+.+
T Consensus 268 ylVmEy~~GGdL~~~l~~~~ 287 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQHG 287 (689)
T ss_dssp EEEECCCCSCBHHHHHHHHC
T ss_pred EEEEecCCCCcHHHHHHhcC
Confidence 99999999999999998543
No 158
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=99.51 E-value=9.5e-14 Score=136.84 Aligned_cols=120 Identities=31% Similarity=0.484 Sum_probs=101.7
Q ss_pred ccccHHHHHHHccCCCcc------CeeeccCcceEEEEEcCCCCEEEEEEccCCCC-CchHhHHHHHHHHHHHhhcCCCC
Q 044615 450 GKIVHEEIIRATNNFDDG------HCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLP-DEMACQQEFLNEVNALTKIRHRN 522 (571)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~------~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~Ei~~l~~l~H~n 522 (571)
..+++.++..++.+|... +.||+|+||.||+|.. +++.||||++..... ......+.+.+|++++++++|||
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 91 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN 91 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence 357788999999988876 8999999999999987 688999999975432 22234677999999999999999
Q ss_pred cccEEEEEEeCCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 523 IVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 523 iv~l~~~~~~~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|+++++++.+.+..++||||+++|+|.+++........++|..+..|+
T Consensus 92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~ 139 (307)
T 2nru_A 92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIA 139 (307)
T ss_dssp BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHH
T ss_pred eEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999865555578998887765
No 159
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=99.50 E-value=3.8e-14 Score=141.04 Aligned_cols=118 Identities=30% Similarity=0.582 Sum_probs=99.8
Q ss_pred cccHHHHHHHccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEE
Q 044615 451 KIVHEEIIRATNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFC 530 (571)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~ 530 (571)
.++..++....++|+..+.||+|+||.||+|..++++.||||++....... ....+.+|++++++++||||+++++++
T Consensus 19 ~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~e~~~l~~l~h~~iv~~~~~~ 96 (326)
T 3uim_A 19 RFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQG--GELQFQTEVEMISMAVHRNLLRLRGFC 96 (326)
T ss_dssp ECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-------CCCHHHHHHHGGGTCCCTTBCCCCEEE
T ss_pred eecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCch--HHHHHHHHHHHHHhccCCCccceEEEE
Confidence 467788999999999999999999999999997789999999997543221 123689999999999999999999999
Q ss_pred EeCCeeEEEEeccCCCChhhhhccCCC-ccCCCHHHHhhhc
Q 044615 531 SHALHSFVVYEYLEMGSLAMNLSNDAA-AEQFCWTKRMNAI 570 (571)
Q Consensus 531 ~~~~~~~lv~e~~~~G~L~~~l~~~~~-~~~l~w~~r~~ia 570 (571)
.+.+..++||||+++|+|.++++.... ...++|..+..|+
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~ 137 (326)
T 3uim_A 97 MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIA 137 (326)
T ss_dssp CCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHH
T ss_pred ecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHH
Confidence 999999999999999999999986543 3458998887765
No 160
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=99.49 E-value=8.6e-14 Score=136.26 Aligned_cols=106 Identities=21% Similarity=0.307 Sum_probs=91.6
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
+.|++.+.||+|+||.||+|+ ..+++.||+|.+...........+.|.+|+.++++++||||+++++++.+.+..|+||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 90 (294)
T 4eqm_A 11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVM 90 (294)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEE
Confidence 469999999999999999999 5589999999997655555556778999999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||+++|+|.+++...+ .+++.....++
T Consensus 91 e~~~g~~L~~~l~~~~---~~~~~~~~~~~ 117 (294)
T 4eqm_A 91 EYIEGPTLSEYIESHG---PLSVDTAINFT 117 (294)
T ss_dssp ECCCSCBHHHHHHHHC---SCCHHHHHHHH
T ss_pred eCCCCCCHHHHHHhcC---CCCHHHHHHHH
Confidence 9999999999997543 46777666553
No 161
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=99.49 E-value=2.7e-14 Score=140.90 Aligned_cols=110 Identities=31% Similarity=0.363 Sum_probs=93.3
Q ss_pred HHccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEE
Q 044615 459 RATNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFV 538 (571)
Q Consensus 459 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 538 (571)
...++|++.+.||+|+||.||+|+. +|+.||||++...... ....++|.+|++++++++||||+++++++.+.+..++
T Consensus 34 i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l 111 (309)
T 3p86_A 34 IPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFH-AERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSI 111 (309)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCS-HHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEE
T ss_pred CChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEE
Confidence 3456799999999999999999986 5888999999765433 3446789999999999999999999999999999999
Q ss_pred EEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 539 VYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||||+++|+|.+++........+++..++.|+
T Consensus 112 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~ 143 (309)
T 3p86_A 112 VTEYLSRGSLYRLLHKSGAREQLDERRRLSMA 143 (309)
T ss_dssp EEECCTTCBHHHHHHSTTHHHHSCHHHHHHHH
T ss_pred EEecCCCCcHHHHHhhcCCCCCCCHHHHHHHH
Confidence 99999999999999865544458888777664
No 162
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=99.49 E-value=1.5e-13 Score=136.31 Aligned_cols=114 Identities=25% Similarity=0.305 Sum_probs=94.7
Q ss_pred ccccHHHHHHHccC----------CCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc
Q 044615 450 GKIVHEEIIRATNN----------FDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI 518 (571)
Q Consensus 450 ~~~~~~~~~~~~~~----------~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l 518 (571)
+.++++++..+++. |+..+.||+|+||.||+|+. .+|+.||||++....... .+.+.+|+.+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~---~~~~~~E~~~l~~l 99 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQR---RELLFNEVVIMRDY 99 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCS---HHHHHHHHHHHTTC
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhH---HHHHHHHHHHHHhC
Confidence 45777887777654 66678999999999999995 489999999997654332 56789999999999
Q ss_pred CCCCcccEEEEEEeCCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 519 ~H~niv~l~~~~~~~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+||||+++++++...+..|+||||+++|+|.+++... .++|..+..|+
T Consensus 100 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~----~l~~~~~~~i~ 147 (321)
T 2c30_A 100 QHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV----RLNEEQIATVC 147 (321)
T ss_dssp CCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC----CCCHHHHHHHH
T ss_pred CCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc----CCCHHHHHHHH
Confidence 9999999999999999999999999999999998743 47788777664
No 163
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=99.48 E-value=1.1e-13 Score=137.94 Aligned_cols=106 Identities=20% Similarity=0.332 Sum_probs=86.7
Q ss_pred cCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCC------
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHAL------ 534 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~------ 534 (571)
++|++.+.||+|+||.||+|+. .+|+.||||++..... ....+.+.+|++++++++|||||+++++|.+..
T Consensus 6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 83 (332)
T 3qd2_B 6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR--ELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE 83 (332)
T ss_dssp HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCST--TTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCc--hhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence 4689999999999999999995 4899999999975432 234578999999999999999999999986643
Q ss_pred ---------------------------------------------------eeEEEEeccCCCChhhhhccCCCccCCCH
Q 044615 535 ---------------------------------------------------HSFVVYEYLEMGSLAMNLSNDAAAEQFCW 563 (571)
Q Consensus 535 ---------------------------------------------------~~~lv~e~~~~G~L~~~l~~~~~~~~l~w 563 (571)
..|+|||||++|+|.+++..........|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~ 163 (332)
T 3qd2_B 84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREH 163 (332)
T ss_dssp HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCH
T ss_pred hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhh
Confidence 37999999999999999987665556666
Q ss_pred HHHhhh
Q 044615 564 TKRMNA 569 (571)
Q Consensus 564 ~~r~~i 569 (571)
....+|
T Consensus 164 ~~~~~i 169 (332)
T 3qd2_B 164 GVCLHI 169 (332)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 164
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=99.48 E-value=9.6e-14 Score=137.05 Aligned_cols=105 Identities=25% Similarity=0.437 Sum_probs=90.5
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|...+.||+|+||.||+|. ..+++.||+|.+... .....+.|.+|++++++++||||+++++++.+.+..++|
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 85 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF---DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFI 85 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEE
Confidence 3568899999999999999999 457999999998543 234567899999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.++++.... .++|.++..|+
T Consensus 86 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~ 114 (310)
T 3s95_A 86 TEYIKGGTLRGIIKSMDS--QYPWSQRVSFA 114 (310)
T ss_dssp EECCTTCBHHHHHHHCCT--TSCHHHHHHHH
T ss_pred EEecCCCcHHHHHHhccC--CCCHHHHHHHH
Confidence 999999999999986433 57888877764
No 165
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=99.48 E-value=5.8e-14 Score=140.86 Aligned_cols=91 Identities=23% Similarity=0.223 Sum_probs=78.8
Q ss_pred HHHccCCCccCeeeccCcceEEEEEc----CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEe
Q 044615 458 IRATNNFDDGHCIGNGGQGSVYKAKL----PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSH 532 (571)
Q Consensus 458 ~~~~~~~~~~~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~ 532 (571)
....+.|++.+.||+|+||+||+|+. .+++.||||.+.+.. ...++.+|+++++.+ +|||||++++++.+
T Consensus 17 p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~-----~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~ 91 (361)
T 4f9c_A 17 PQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS-----HPIRIAAELQCLTVAGGQDNVMGVKYCFRK 91 (361)
T ss_dssp GGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS-----CHHHHHHHHHHHHHTCSBTTBCCCSEEEEE
T ss_pred CCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc-----CHHHHHHHHHHHHHhcCCCCCceEEEEEEE
Confidence 34567899999999999999999973 257789999986542 135688999999988 69999999999999
Q ss_pred CCeeEEEEeccCCCChhhhhc
Q 044615 533 ALHSFVVYEYLEMGSLAMNLS 553 (571)
Q Consensus 533 ~~~~~lv~e~~~~G~L~~~l~ 553 (571)
.+..|+|||||++|+|.++++
T Consensus 92 ~~~~~lvmE~~~g~~L~~~~~ 112 (361)
T 4f9c_A 92 NDHVVIAMPYLEHESFLDILN 112 (361)
T ss_dssp TTEEEEEEECCCCCCHHHHHT
T ss_pred CCEEEEEEeCCCcccHHHHHc
Confidence 999999999999999999995
No 166
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=99.47 E-value=1.2e-13 Score=134.58 Aligned_cols=93 Identities=15% Similarity=0.070 Sum_probs=83.8
Q ss_pred cCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
+.|++.+.||+|+||.||+|.. .+++.||||++...........+.|.+|+.++++++||||+++++++.+.+..|+||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 4699999999999999999994 569999999998765555555678999999999999999999999999999999999
Q ss_pred eccCCCChhhhhcc
Q 044615 541 EYLEMGSLAMNLSN 554 (571)
Q Consensus 541 e~~~~G~L~~~l~~ 554 (571)
||++||+|.+++++
T Consensus 111 e~~~g~~L~~~l~~ 124 (286)
T 3uqc_A 111 EWIRGGSLQEVADT 124 (286)
T ss_dssp ECCCEEEHHHHHTT
T ss_pred EecCCCCHHHHHhc
Confidence 99999999999964
No 167
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=99.47 E-value=1.3e-13 Score=139.80 Aligned_cols=105 Identities=24% Similarity=0.393 Sum_probs=88.8
Q ss_pred cCCCccCeeeccCcceEEEEEcC----CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLP----TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSF 537 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 537 (571)
.+|++.+.||+|+||.||+|+.. ++..||||.+.... .....++|.+|+.++++++|||||++++++.+.+..|
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 122 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY--TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVM 122 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCE
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceE
Confidence 46899999999999999999853 57789999997543 2344678999999999999999999999999999999
Q ss_pred EEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 538 VVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+||||+++|+|.++++..+ ..++|.+++.|+
T Consensus 123 lv~e~~~~~sL~~~l~~~~--~~~~~~~~~~i~ 153 (373)
T 2qol_A 123 IVTEYMENGSLDSFLRKHD--AQFTVIQLVGML 153 (373)
T ss_dssp EEEECCTTCBHHHHHHTTT--TCSCHHHHHHHH
T ss_pred EEEeCCCCCcHHHHHHhCC--CCCCHHHHHHHH
Confidence 9999999999999998543 357888877664
No 168
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=99.47 E-value=1.2e-13 Score=137.32 Aligned_cols=106 Identities=21% Similarity=0.277 Sum_probs=88.5
Q ss_pred HccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEE
Q 044615 460 ATNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFV 538 (571)
Q Consensus 460 ~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 538 (571)
..++|++.+.||+|+||.||+|. ..+|+.||||++...... ....+.+.+|+++++.++||||+++++++.+.+..|+
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l 91 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLN-PTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYL 91 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEE
Confidence 34679999999999999999999 468999999999754332 3446778999999999999999999999999999999
Q ss_pred EEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 539 VYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
||||+++|+|.+++...+ .+++.....+
T Consensus 92 v~e~~~~~~L~~~l~~~~---~l~~~~~~~~ 119 (328)
T 3fe3_A 92 IMEYASGGEVFDYLVAHG---RMKEKEARSK 119 (328)
T ss_dssp EECCCTTCBHHHHHHHHC---CCCHHHHHHH
T ss_pred EEECCCCCcHHHHHHHcC---CCCHHHHHHH
Confidence 999999999999997543 3555544443
No 169
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.46 E-value=1.5e-13 Score=132.63 Aligned_cols=103 Identities=21% Similarity=0.379 Sum_probs=88.3
Q ss_pred cCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEEe
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYE 541 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 541 (571)
++|+..+.||+|+||.||+|...+++.||+|++...... .+++.+|++++++++||||+++++++.+....|+|||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS----EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFE 85 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBC----HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEecccccC----HHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEE
Confidence 468899999999999999999778889999999764322 3679999999999999999999999999999999999
Q ss_pred ccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 542 YLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 542 ~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|+++|+|.+++..... .+++.....|+
T Consensus 86 ~~~~~~L~~~l~~~~~--~~~~~~~~~i~ 112 (269)
T 4hcu_A 86 FMEHGCLSDYLRTQRG--LFAAETLLGMC 112 (269)
T ss_dssp CCTTCBHHHHHHTTTT--CCCHHHHHHHH
T ss_pred eCCCCcHHHHHHhcCc--ccCHHHHHHHH
Confidence 9999999999975433 46777666553
No 170
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=99.46 E-value=2.5e-13 Score=133.17 Aligned_cols=102 Identities=23% Similarity=0.333 Sum_probs=86.5
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.+.|+..+.||+|+||.||+|. ..+++.||||++....... .+.+.+|+.++++++|||||++++++...+..|+|
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 95 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK---KELIINEILVMRENKNPNIVNYLDSYLVGDELWVV 95 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSC---HHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccH---HHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEE
Confidence 3579999999999999999999 5689999999987543332 46789999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
|||+++|+|.+++.+. .+++.....|
T Consensus 96 ~e~~~~~~L~~~~~~~----~~~~~~~~~~ 121 (297)
T 3fxz_A 96 MEYLAGGSLTDVVTET----CMDEGQIAAV 121 (297)
T ss_dssp EECCTTCBHHHHHHHS----CCCHHHHHHH
T ss_pred EECCCCCCHHHHHhhc----CCCHHHHHHH
Confidence 9999999999999754 3555555444
No 171
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=2.9e-13 Score=120.78 Aligned_cols=89 Identities=22% Similarity=0.291 Sum_probs=48.1
Q ss_pred CCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEEC
Q 044615 266 VKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDI 345 (571)
Q Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 345 (571)
++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34455555555555444445555555555555555555444444555555555555555555554445555555566666
Q ss_pred cCCcCcccC
Q 044615 346 SYNALQGLI 354 (571)
Q Consensus 346 s~N~l~~~~ 354 (571)
++|++++..
T Consensus 110 ~~N~~~c~c 118 (170)
T 3g39_A 110 LNNPWDCAC 118 (170)
T ss_dssp CSSCBCTTB
T ss_pred CCCCCCCCc
Confidence 666555443
No 172
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=99.46 E-value=1.9e-13 Score=137.66 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=88.9
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCch---HhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCee
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEM---ACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS 536 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 536 (571)
.+.|++.+.||+|+||.||+|. ..+|+.||||++.+...... ...+.+.+|+.++++++|||||++++++.+....
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 3569999999999999999999 45799999999976543211 1356799999999999999999999999999999
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|+||||+++|+|.+++...+ .+++.....|+
T Consensus 91 ~lv~e~~~gg~L~~~l~~~~---~l~~~~~~~i~ 121 (361)
T 2yab_A 91 VLILELVSGGELFDFLAQKE---SLSEEEATSFI 121 (361)
T ss_dssp EEEEECCCSCBHHHHHTTCS---CCBHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHhcC---CCCHHHHHHHH
Confidence 99999999999999997532 46666665543
No 173
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=2.8e-13 Score=120.88 Aligned_cols=107 Identities=27% Similarity=0.276 Sum_probs=77.4
Q ss_pred cceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCC
Q 044615 68 EATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSL 147 (571)
Q Consensus 68 l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 147 (571)
.+.+++++|.++. +|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|+|++..+..|.++++|
T Consensus 11 ~~~l~~s~n~l~~--------ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 11 GTTVDCSGKSLAS--------VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80 (170)
T ss_dssp TTEEECTTSCCSS--------CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCEEEeCCCCcCc--------cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC
Confidence 4556666666653 555553 677788888888777667777777888888888888776666667777788
Q ss_pred CeeecccCcCcccCCccccCCCCCCEEEccCCCCCcc
Q 044615 148 SILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGS 184 (571)
Q Consensus 148 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 184 (571)
++|+|++|.+.+..+..|..+++|++|+|++|.+...
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 8888888877766556677777778888877777643
No 174
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=137.57 Aligned_cols=105 Identities=24% Similarity=0.321 Sum_probs=87.8
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.+.|++.+.||+|+||+||+|. ..+|+.||||++....... ..+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 9 ~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~--~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv 86 (347)
T 3zgw_A 9 LKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGS--DLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMV 86 (347)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC-----CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccch--HHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEE
Confidence 4679999999999999999999 5689999999997654332 245688999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++...+ .+++.....|+
T Consensus 87 ~E~~~gg~L~~~l~~~~---~l~~~~~~~i~ 114 (347)
T 3zgw_A 87 LEYCPGGELFDYIISQD---RLSEEETRVVF 114 (347)
T ss_dssp EECCTTCBHHHHHHHHS---SCCHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHcC---CCCHHHHHHHH
Confidence 99999999999997543 36666655543
No 175
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=99.45 E-value=3.3e-14 Score=146.56 Aligned_cols=114 Identities=18% Similarity=0.107 Sum_probs=89.9
Q ss_pred HHHHHHHccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEe
Q 044615 454 HEEIIRATNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSH 532 (571)
Q Consensus 454 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 532 (571)
..++....++|+..+.||+|+||+||+|+. .+++.||||++.+.........+.+.+|+.++..++|||||+++++|.+
T Consensus 66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 145 (437)
T 4aw2_A 66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD 145 (437)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence 344555678899999999999999999995 4688999999864221111122348899999999999999999999999
Q ss_pred CCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 533 ALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 533 ~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
.+..|+|||||++|+|.+++.+... .+++.....+
T Consensus 146 ~~~~~lV~Ey~~gg~L~~~l~~~~~--~l~e~~~~~~ 180 (437)
T 4aw2_A 146 DNNLYLVMDYYVGGDLLTLLSKFED--RLPEEMARFY 180 (437)
T ss_dssp SSEEEEEECCCTTCBHHHHHHTTTT--CCCHHHHHHH
T ss_pred CCEEEEEEecCCCCcHHHHHHHccC--CCCHHHHHHH
Confidence 9999999999999999999986332 3566555443
No 176
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=99.44 E-value=4e-14 Score=144.90 Aligned_cols=114 Identities=19% Similarity=0.113 Sum_probs=90.5
Q ss_pred HHHHHHHccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEe
Q 044615 454 HEEIIRATNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSH 532 (571)
Q Consensus 454 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 532 (571)
.++.....++|+..+.||+|+||+||+|+. .+|+.||||++.+.........+.+.+|+.++..++|||||++++++.+
T Consensus 53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 132 (412)
T 2vd5_A 53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD 132 (412)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence 344445568899999999999999999994 5899999999964321111223458899999999999999999999999
Q ss_pred CCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 533 ALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 533 ~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
.+..|+||||+++|+|.+++.+.+. .+++.....+
T Consensus 133 ~~~~~lVmE~~~gg~L~~~l~~~~~--~l~~~~~~~~ 167 (412)
T 2vd5_A 133 ENYLYLVMEYYVGGDLLTLLSKFGE--RIPAEMARFY 167 (412)
T ss_dssp SSEEEEEECCCCSCBHHHHHHHHSS--CCCHHHHHHH
T ss_pred CCEEEEEEcCCCCCcHHHHHHhcCC--CCCHHHHHHH
Confidence 9999999999999999999975432 3555554433
No 177
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=99.44 E-value=2.6e-13 Score=134.55 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=87.9
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|++.+.||+|+||.||+|. ..+++.||+|.+.... ...+.+.+|+.+++.++||||+++++++.+.+..|+|
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~----~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv 79 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG----TDQVLVKKEISILNIARHRNILHLHESFESMEELVMI 79 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT----HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc----ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEE
Confidence 3579999999999999999999 4578999999987432 3356789999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++.... ..+++.....|+
T Consensus 80 ~e~~~g~~L~~~l~~~~--~~~~~~~~~~i~ 108 (321)
T 1tki_A 80 FEFISGLDIFERINTSA--FELNEREIVSYV 108 (321)
T ss_dssp ECCCCCCBHHHHHTSSS--CCCCHHHHHHHH
T ss_pred EEeCCCCCHHHHHHhcC--CCCCHHHHHHHH
Confidence 99999999999997543 246776665553
No 178
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=5.3e-13 Score=119.55 Aligned_cols=105 Identities=26% Similarity=0.283 Sum_probs=73.4
Q ss_pred ceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCC
Q 044615 69 ATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLS 148 (571)
Q Consensus 69 ~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 148 (571)
+.+++++|+++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|+|++..+..|.++++|+
T Consensus 15 ~~l~~~~n~l~--------~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 84 (174)
T 2r9u_A 15 TLVNCQNIRLA--------SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLT 84 (174)
T ss_dssp SEEECCSSCCS--------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cEEEeCCCCCC--------ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhh
Confidence 45566666554 3555553 6777777777777766677777777777777777777766555667777777
Q ss_pred eeecccCcCcccCCccccCCCCCCEEEccCCCCCc
Q 044615 149 ILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNG 183 (571)
Q Consensus 149 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 183 (571)
+|+|++|.+.+..+..|..+++|++|+|++|.+..
T Consensus 85 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 85 QLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred EEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 77777777775555557777777777777777763
No 179
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=99.43 E-value=3.2e-13 Score=136.24 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=89.4
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|++.+.||+|+||.||+|. ..+++.||+|++...... ....+.+.+|++++++++|||||++++++.+.+..|+|
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 106 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 106 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 3569999999999999999998 457999999999765433 34457799999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++.... .+++.....|+
T Consensus 107 ~e~~~gg~L~~~l~~~~---~~~~~~~~~~~ 134 (362)
T 2bdw_A 107 FDLVTGGELFEDIVARE---FYSEADASHCI 134 (362)
T ss_dssp ECCCCSCBHHHHHTTCS---CCCHHHHHHHH
T ss_pred EecCCCCCHHHHHHHcC---CCCHHHHHHHH
Confidence 99999999999997542 46666655543
No 180
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=99.43 E-value=2.5e-13 Score=134.67 Aligned_cols=107 Identities=21% Similarity=0.343 Sum_probs=88.9
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCC--eeEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHAL--HSFV 538 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~--~~~l 538 (571)
+.|.+.+.||+|+||.||+|. ..+++.||||++..... ....+.+.+|++++++++||||+++++++.... ..|+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 86 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF--LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVL 86 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG--GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccc--cchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEE
Confidence 458899999999999999999 45799999999974322 123567889999999999999999999998765 7799
Q ss_pred EEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 539 VYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||||+++|+|.+++........+++.....|+
T Consensus 87 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~ 118 (319)
T 4euu_A 87 IMEFCPCGSLYTVLEEPSNAYGLPESEFLIVL 118 (319)
T ss_dssp EEECCTTCBHHHHHHSGGGTTCCCHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHhccccCCCHHHHHHHH
Confidence 99999999999999865544458888777664
No 181
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=99.43 E-value=1.9e-13 Score=131.86 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=89.6
Q ss_pred cCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC--CeeEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA--LHSFVV 539 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~~lv 539 (571)
++|+..+.||+|+||.||+|+.. ++.||||++...... ....+.|.+|+.++++++||||+++++++.+. ...++|
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWS-TRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCC-HHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccC-HHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 46889999999999999999974 888999999865433 34457799999999999999999999999887 778999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.++++... ...++|..+..|+
T Consensus 88 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~ 117 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEGT-NFVVDQSQAVKFA 117 (271)
T ss_dssp EECCTTCBHHHHHHSCS-SCCCCHHHHHHHH
T ss_pred ecccCCCcHHHHHhhcc-cCCCCHHHHHHHH
Confidence 99999999999998643 2357888777664
No 182
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=99.43 E-value=2.6e-13 Score=135.91 Aligned_cols=105 Identities=19% Similarity=0.221 Sum_probs=88.3
Q ss_pred cCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCeeEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv 539 (571)
++|+..+.||+|+||.||+|+. .+++.||||++.+.........+.+.+|+.++.++ +|||||++++++.+.+..|+|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 5689999999999999999994 57899999999865544445567789999999987 899999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
|||+++|+|.+++...+ .+++.....+
T Consensus 89 ~e~~~gg~L~~~l~~~~---~l~~~~~~~~ 115 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQRQR---KLPEEHARFY 115 (345)
T ss_dssp ECCCCSCBHHHHHHHHS---SCCHHHHHHH
T ss_pred EeCCCCCcHHHHHHHcC---CCCHHHHHHH
Confidence 99999999999997542 3555555444
No 183
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=99.43 E-value=1.2e-13 Score=137.85 Aligned_cols=105 Identities=21% Similarity=0.196 Sum_probs=85.9
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
++|+..+.||+|+||+||+|+ ..+|+.||+|++.+.........+.+.+|++++++++||||+++++++.+.+..|+||
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~ 84 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence 579999999999999999999 4579999999996532111223567889999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
||+++|+|.+++...+ .+++.+...+
T Consensus 85 E~~~gg~L~~~l~~~~---~~~~~~~~~~ 110 (337)
T 1o6l_A 85 EYANGGELFFHLSRER---VFTEERARFY 110 (337)
T ss_dssp ECCTTCBHHHHHHHHS---CCCHHHHHHH
T ss_pred eCCCCCcHHHHHHhcC---CCCHHHHHHH
Confidence 9999999999997542 3555544433
No 184
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=99.43 E-value=2.9e-13 Score=137.03 Aligned_cols=108 Identities=22% Similarity=0.380 Sum_probs=89.0
Q ss_pred ccCCCccCeeeccCcceEEEEEc--------CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL--------PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCS 531 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~--------~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~ 531 (571)
.++|++.+.||+|+||.||+|+. .++..||||++.... .....+.+.+|+++++++ +|||||+++++|.
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~ 157 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNIINLLGACT 157 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC--BHHHHHHHHHHHHHHHHSCCCTTBCCEEEEEC
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc--CHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEc
Confidence 35688999999999999999973 245579999997542 334567899999999999 8999999999999
Q ss_pred eCCeeEEEEeccCCCChhhhhccCCC-------------ccCCCHHHHhhhc
Q 044615 532 HALHSFVVYEYLEMGSLAMNLSNDAA-------------AEQFCWTKRMNAI 570 (571)
Q Consensus 532 ~~~~~~lv~e~~~~G~L~~~l~~~~~-------------~~~l~w~~r~~ia 570 (571)
+.+..|+||||+++|+|.+++..... ...++|...++|+
T Consensus 158 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 209 (370)
T 2psq_A 158 QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCT 209 (370)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHH
Confidence 99999999999999999999986432 2357887776654
No 185
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=99.43 E-value=1.3e-13 Score=136.53 Aligned_cols=106 Identities=19% Similarity=0.252 Sum_probs=86.6
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|++.+.||+|+||.||+|+ ..+|+.||+|++.+.........+.+.+|+.+++.++|||||++++++.+....|+|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 3569999999999999999999 458999999999753221223356788999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
|||+++|+|.+++.... .+++.....+
T Consensus 85 ~e~~~gg~L~~~l~~~~---~~~~~~~~~~ 111 (318)
T 1fot_A 85 MDYIEGGELFSLLRKSQ---RFPNPVAKFY 111 (318)
T ss_dssp ECCCCSCBHHHHHHHTS---SCCHHHHHHH
T ss_pred EeCCCCCCHHHHHHHcC---CCCHHHHHHH
Confidence 99999999999997543 3555554433
No 186
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=99.43 E-value=4.5e-14 Score=144.43 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=82.9
Q ss_pred HHHHHccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCC
Q 044615 456 EIIRATNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHAL 534 (571)
Q Consensus 456 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 534 (571)
++....++|++.+.||+|+||+||+|+. .+++.||+|++.+.........+.+.+|+.+++.++|||||+++++|.+.+
T Consensus 63 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~ 142 (410)
T 3v8s_A 63 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR 142 (410)
T ss_dssp HHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred hcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECC
Confidence 4444567899999999999999999994 578999999986421111111245789999999999999999999999999
Q ss_pred eeEEEEeccCCCChhhhhccC
Q 044615 535 HSFVVYEYLEMGSLAMNLSND 555 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~ 555 (571)
..|+|||||+||+|.+++++.
T Consensus 143 ~~~lV~E~~~gg~L~~~l~~~ 163 (410)
T 3v8s_A 143 YLYMVMEYMPGGDLVNLMSNY 163 (410)
T ss_dssp EEEEEECCCTTEEHHHHHHHC
T ss_pred EEEEEEeCCCCCcHHHHHHcC
Confidence 999999999999999999753
No 187
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=99.42 E-value=3e-13 Score=134.31 Aligned_cols=105 Identities=24% Similarity=0.309 Sum_probs=85.9
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|++.+.||+|+||.||+|. ..+++.||||++...... ...+.+.+|+.+++.++|||||++++++.+.+..|+|
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv 83 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV--DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF 83 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC---------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEccccc--chHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 3579999999999999999999 458999999999754322 2245688999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++.... .+++.....|+
T Consensus 84 ~e~~~~~~L~~~l~~~~---~~~~~~~~~i~ 111 (323)
T 3tki_A 84 LEYCSGGELFDRIEPDI---GMPEPDAQRFF 111 (323)
T ss_dssp EECCTTEEGGGGSBTTT---BCCHHHHHHHH
T ss_pred EEcCCCCcHHHHHhhcC---CCCHHHHHHHH
Confidence 99999999999997542 46777666554
No 188
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=99.42 E-value=3.4e-13 Score=133.97 Aligned_cols=105 Identities=24% Similarity=0.403 Sum_probs=87.6
Q ss_pred cCCCccCeeeccCcceEEEEEcC----CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLP----TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSF 537 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 537 (571)
+.|.+.+.||+|+||.||+|... .+..||||.+.... .....+.|.+|++++++++||||+++++++.+.+..|
T Consensus 49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 126 (325)
T 3kul_A 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY--TERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAM 126 (325)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCE
T ss_pred hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccE
Confidence 46888999999999999999853 34459999997543 2344678999999999999999999999999999999
Q ss_pred EEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 538 VVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+||||+++|+|.++++.... .++|..+..|+
T Consensus 127 lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~ 157 (325)
T 3kul_A 127 IVTEYMENGSLDTFLRTHDG--QFTIMQLVGML 157 (325)
T ss_dssp EEEECCTTCBHHHHHHTTTT--CSCHHHHHHHH
T ss_pred EEeeCCCCCcHHHHHHhccc--CCCHHHHHHHH
Confidence 99999999999999975433 57787777664
No 189
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=6.6e-13 Score=118.90 Aligned_cols=88 Identities=22% Similarity=0.286 Sum_probs=42.7
Q ss_pred CCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEEC
Q 044615 266 VKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDI 345 (571)
Q Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 345 (571)
++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 34444444444444444444444444444445444444433333445555555555555555444444555555555555
Q ss_pred cCCcCccc
Q 044615 346 SYNALQGL 353 (571)
Q Consensus 346 s~N~l~~~ 353 (571)
++|++.+.
T Consensus 113 ~~N~~~c~ 120 (174)
T 2r9u_A 113 YNNPWDCE 120 (174)
T ss_dssp CSSCBCTT
T ss_pred CCCCcccc
Confidence 55555443
No 190
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=99.42 E-value=4.8e-13 Score=133.00 Aligned_cols=106 Identities=19% Similarity=0.274 Sum_probs=88.3
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCc---hHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDE---MACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSF 537 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 537 (571)
+.|+..+.||+|+||.||+|. ..+|+.||||.+....... ....+.+.+|+.++++++||||+++++++.+....|
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 90 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI 90 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 358899999999999999999 4579999999997543321 123577999999999999999999999999999999
Q ss_pred EEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 538 VVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+||||+++|+|.+++... ..+++.....|+
T Consensus 91 lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~ 120 (326)
T 2y0a_A 91 LILELVAGGELFDFLAEK---ESLTEEEATEFL 120 (326)
T ss_dssp EEEECCCSCBHHHHHTTS---SCCBHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHhc---CCcCHHHHHHHH
Confidence 999999999999999753 246777666554
No 191
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=99.42 E-value=4.6e-13 Score=135.07 Aligned_cols=102 Identities=24% Similarity=0.286 Sum_probs=86.5
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|++.+.||+|+||.||+|+ ..+++.||||++....... +.+.+|+.++++++|||||++++++.+.+..|+|
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 94 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAID----ENVQREIINHRSLRHPNIVRFKEVILTPTHLAII 94 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSC----HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcccc----HHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEE
Confidence 3569999999999999999999 4589999999997654332 5688999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
|||+++|+|.+++...+ .+++.....|
T Consensus 95 ~e~~~~~~L~~~l~~~~---~~~~~~~~~i 121 (361)
T 3uc3_A 95 MEYASGGELYERICNAG---RFSEDEARFF 121 (361)
T ss_dssp EECCCSCBHHHHHHHHS---SCCHHHHHHH
T ss_pred EEeCCCCCHHHHHHhcC---CCCHHHHHHH
Confidence 99999999999997533 3566655544
No 192
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=99.42 E-value=2.4e-13 Score=131.14 Aligned_cols=104 Identities=25% Similarity=0.372 Sum_probs=88.7
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
.++|++.+.||+|+||.||+|..+++..||||++...... .+++.+|++++.+++||||+++++++.+....|+||
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 82 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMS----EDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVT 82 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBC----HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEE
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCc----HHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEE
Confidence 3568899999999999999999878888999999754322 367899999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||+++|+|.+++...+ ..+++..+..|+
T Consensus 83 e~~~~~~L~~~l~~~~--~~~~~~~~~~i~ 110 (268)
T 3sxs_A 83 EYISNGCLLNYLRSHG--KGLEPSQLLEMC 110 (268)
T ss_dssp ECCTTCBHHHHHHHHG--GGCCHHHHHHHH
T ss_pred EccCCCcHHHHHHHcC--CCCCHHHHHHHH
Confidence 9999999999997542 247777776654
No 193
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=99.42 E-value=1.5e-13 Score=135.71 Aligned_cols=106 Identities=21% Similarity=0.320 Sum_probs=88.9
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCe----e
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALH----S 536 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~----~ 536 (571)
+.|++.+.||+|+||.||+|+ ..+++.||||++...........+.+.+|++++++++||||+++++++..... .
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 91 (311)
T 3ork_A 12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP 91 (311)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCccc
Confidence 569999999999999999999 56899999999987655555556789999999999999999999999876543 4
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|+||||+++|+|.++++..+ .+++.....|+
T Consensus 92 ~lv~e~~~g~~L~~~l~~~~---~~~~~~~~~~~ 122 (311)
T 3ork_A 92 YIVMEYVDGVTLRDIVHTEG---PMTPKRAIEVI 122 (311)
T ss_dssp EEEEECCCEEEHHHHHHHHC---SCCHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHhcC---CCCHHHHHHHH
Confidence 99999999999999997543 46777666554
No 194
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=99.42 E-value=1.7e-13 Score=139.25 Aligned_cols=106 Identities=24% Similarity=0.443 Sum_probs=88.8
Q ss_pred ccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|...+.||+|+||.||+|.. .+++.||||.+.... .....++|.+|++++++++|||||++++++.+.+..|+|
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 190 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL--PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIV 190 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTS--CHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccC--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEE
Confidence 35688899999999999999995 479999999987542 223456789999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.++++..+ ..+++...+.|+
T Consensus 191 ~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~ 219 (377)
T 3cbl_A 191 MELVQGGDFLTFLRTEG--ARLRVKTLLQMV 219 (377)
T ss_dssp EECCTTCBHHHHHHHHG--GGCCHHHHHHHH
T ss_pred EEcCCCCCHHHHHHhcC--CCCCHHHHHHHH
Confidence 99999999999997543 247777766654
No 195
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=139.27 Aligned_cols=105 Identities=18% Similarity=0.216 Sum_probs=87.0
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
++|++.+.||+|+||.||+|. ..+++.||+|++.+.........+.+.+|++++++++|||||+++++|.+.+..|+||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 468999999999999999999 5578999999986432222233567899999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
||+++|+|.+++.... .+++.....+
T Consensus 95 e~~~gg~L~~~l~~~~---~l~~~~~~~~ 120 (384)
T 4fr4_A 95 DLLLGGDLRYHLQQNV---HFKEETVKLF 120 (384)
T ss_dssp CCCTTEEHHHHHHTTC---CCCHHHHHHH
T ss_pred ecCCCCcHHHHHHhcC---CCCHHHHHHH
Confidence 9999999999998542 3666655544
No 196
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=99.41 E-value=1.9e-13 Score=137.19 Aligned_cols=105 Identities=20% Similarity=0.222 Sum_probs=86.8
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
++|+..+.||+|+||.||+|+ ..+|+.||||++.+.........+.+.+|++++++++||||+++++++.+.+..|+||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 568999999999999999999 4589999999986532222233567899999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
||+++|+|.+++.+.+ .+++.....+
T Consensus 121 e~~~gg~L~~~l~~~~---~~~~~~~~~~ 146 (350)
T 1rdq_E 121 EYVAGGEMFSHLRRIG---RFSEPHARFY 146 (350)
T ss_dssp ECCTTCBHHHHHHHHC---CCCHHHHHHH
T ss_pred cCCCCCcHHHHHHHcC---CCCHHHHHHH
Confidence 9999999999998543 3555555444
No 197
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=99.41 E-value=2.1e-13 Score=136.90 Aligned_cols=107 Identities=19% Similarity=0.256 Sum_probs=86.7
Q ss_pred HccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCeeE
Q 044615 460 ATNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALHSF 537 (571)
Q Consensus 460 ~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~ 537 (571)
..++|++.+.||+|+||+||+|+ ..+++.||||++.+.........+.+.+|++++..+ +|||||++++++.+.+..|
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 100 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF 100 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence 34679999999999999999999 457999999999753222223456788999999988 7999999999999999999
Q ss_pred EEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 538 VVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
+|||||++|+|.+++...+ .+++.....+
T Consensus 101 lv~E~~~gg~L~~~l~~~~---~~~~~~~~~~ 129 (353)
T 3txo_A 101 FVMEFVNGGDLMFHIQKSR---RFDEARARFY 129 (353)
T ss_dssp EEEECCCSCBHHHHHHHHS---SCCHHHHHHH
T ss_pred EEEeCCCCCcHHHHHHHcC---CCCHHHHHHH
Confidence 9999999999999997542 3566555444
No 198
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=99.41 E-value=3.3e-13 Score=131.24 Aligned_cols=104 Identities=21% Similarity=0.356 Sum_probs=85.9
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
.++|+..+.||+|+||.||+|...++..||||++...... .+++.+|++++.+++||||+++++++.+.+..|+||
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 98 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS----EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIIT 98 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBC----HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCC----HHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEE
Confidence 3468899999999999999999878889999999765332 367899999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||+++|+|.+++.... ..+++.....|+
T Consensus 99 e~~~~~~L~~~l~~~~--~~~~~~~~~~i~ 126 (283)
T 3gen_A 99 EYMANGCLLNYLREMR--HRFQTQQLLEMC 126 (283)
T ss_dssp CCCTTCBHHHHHHCGG--GCCCHHHHHHHH
T ss_pred eccCCCcHHHHHHHhc--cCCCHHHHHHHH
Confidence 9999999999997532 247777776654
No 199
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=99.41 E-value=5.6e-13 Score=135.46 Aligned_cols=105 Identities=16% Similarity=0.279 Sum_probs=88.7
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.+.|++.+.||+|+||.||+|. ..+|+.||+|.+.... ......+.+|++++++++|||||++++++.+....|+|
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~---~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 126 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY---PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI 126 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS---HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccc---hhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEE
Confidence 3569999999999999999999 4589999999997543 23356789999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++.... ..+++.....|+
T Consensus 127 ~E~~~gg~L~~~l~~~~--~~l~~~~~~~i~ 155 (387)
T 1kob_A 127 LEFLSGGELFDRIAAED--YKMSEAEVINYM 155 (387)
T ss_dssp EECCCCCBHHHHTTCTT--CCBCHHHHHHHH
T ss_pred EEcCCCCcHHHHHHhhc--CCCCHHHHHHHH
Confidence 99999999999997543 246777666554
No 200
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=99.41 E-value=2.5e-13 Score=141.57 Aligned_cols=107 Identities=23% Similarity=0.312 Sum_probs=88.4
Q ss_pred ccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|.+.+.||+|+||.||+|+. .+|+.||||++...........+.+.+|+.+++.++||||+++++++.+.+..|+|
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv 94 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV 94 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 35699999999999999999994 58999999999643222222356789999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++...+ .+++.....|+
T Consensus 95 ~E~~~gg~L~~~l~~~~---~l~~~~~~~i~ 122 (476)
T 2y94_A 95 MEYVSGGELFDYICKNG---RLDEKESRRLF 122 (476)
T ss_dssp EECCSSEEHHHHTTSSS---SCCHHHHHHHH
T ss_pred EeCCCCCcHHHHHHhcC---CCCHHHHHHHH
Confidence 99999999999997542 46776665553
No 201
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=99.41 E-value=2.4e-13 Score=138.27 Aligned_cols=106 Identities=17% Similarity=0.194 Sum_probs=85.8
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCeeEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALHSFV 538 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~l 538 (571)
.++|++.+.||+|+||+||+|+ ..+++.||||++.+.........+.+.+|..++.++ +|||||++++++.+.+..|+
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 4579999999999999999999 457889999999765433333345688999999887 89999999999999999999
Q ss_pred EEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 539 VYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
||||+++|+|.+++.+.+ .+++.....+
T Consensus 131 V~E~~~gg~L~~~l~~~~---~l~~~~~~~~ 158 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQR---KLPEEHARFY 158 (396)
T ss_dssp EEECCTTCBHHHHHHHHS---SCCHHHHHHH
T ss_pred EEEcCCCCcHHHHHHHcC---CCCHHHHHHH
Confidence 999999999999997542 3666655544
No 202
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=99.40 E-value=8.5e-13 Score=130.18 Aligned_cols=110 Identities=21% Similarity=0.258 Sum_probs=89.6
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|++.+.||+|+||.||+|. ..+|+.||||++...........+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 3569999999999999999999 568999999999865444455677899999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCC-CccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDA-AAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~-~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++.... ....+++....+|+
T Consensus 111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~ 142 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYF 142 (310)
T ss_dssp EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred EecCCCCCHHHHHHHhcccccCCCHHHHHHHH
Confidence 99999999999997421 22346666665543
No 203
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=99.40 E-value=6.4e-13 Score=133.04 Aligned_cols=110 Identities=24% Similarity=0.402 Sum_probs=91.1
Q ss_pred HHccCCCccCeeeccCcceEEEEEcC------CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEe
Q 044615 459 RATNNFDDGHCIGNGGQGSVYKAKLP------TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSH 532 (571)
Q Consensus 459 ~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 532 (571)
...++|+..+.||+|+||.||+|+.. +++.||||.+.... .....+.|.+|++++++++||||+++++++.+
T Consensus 44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~ 121 (343)
T 1luf_A 44 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA--SADMQADFQREAALMAEFDNPNIVKLLGVCAV 121 (343)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred ecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc
Confidence 34567999999999999999999853 45789999997543 23446789999999999999999999999999
Q ss_pred CCeeEEEEeccCCCChhhhhccCCC---------------------ccCCCHHHHhhhc
Q 044615 533 ALHSFVVYEYLEMGSLAMNLSNDAA---------------------AEQFCWTKRMNAI 570 (571)
Q Consensus 533 ~~~~~lv~e~~~~G~L~~~l~~~~~---------------------~~~l~w~~r~~ia 570 (571)
.+..|+||||+++|+|.+++..... ...++|.+++.|+
T Consensus 122 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 180 (343)
T 1luf_A 122 GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIA 180 (343)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHH
T ss_pred CCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHH
Confidence 9999999999999999999975321 1467888777664
No 204
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=99.40 E-value=2.1e-13 Score=136.43 Aligned_cols=108 Identities=18% Similarity=0.222 Sum_probs=86.5
Q ss_pred HHccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCee
Q 044615 459 RATNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALHS 536 (571)
Q Consensus 459 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~ 536 (571)
...++|++.+.||+|+||.||+|+. .+|+.||||++.+.........+.+.+|..++..+ +||||+++++++.+.+..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 3457899999999999999999994 57899999999753211112346688999999876 999999999999999999
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
|+||||+++|+|.+++...+ .+++.+...+
T Consensus 94 ~lv~E~~~gg~L~~~l~~~~---~~~~~~~~~~ 123 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSCH---KFDLSRATFY 123 (345)
T ss_dssp EEEEECCTTCBHHHHHHHHS---SCCHHHHHHH
T ss_pred EEEEeCCCCCcHHHHHHHcC---CCCHHHHHHH
Confidence 99999999999999997532 3666655544
No 205
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=99.40 E-value=6.5e-13 Score=135.52 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=90.2
Q ss_pred ccCCCccCeeecc--CcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeE
Q 044615 461 TNNFDDGHCIGNG--GQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSF 537 (571)
Q Consensus 461 ~~~~~~~~~lg~G--~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 537 (571)
.++|++.+.||+| +||.||+|+. .+++.||||++...... ....+.+.+|++++++++|||||++++++.+.+..|
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 102 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACS-NEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW 102 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccC-hHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE
Confidence 3569999999999 9999999994 58999999999764332 344677889999999999999999999999999999
Q ss_pred EEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 538 VVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+|||||++|+|.+++..... ..+++.....|+
T Consensus 103 lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~ 134 (389)
T 3gni_B 103 VVTSFMAYGSAKDLICTHFM-DGMNELAIAYIL 134 (389)
T ss_dssp EEEECCTTCBHHHHHHHTCT-TCCCHHHHHHHH
T ss_pred EEEEccCCCCHHHHHhhhcc-cCCCHHHHHHHH
Confidence 99999999999999975422 246776665553
No 206
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=99.40 E-value=3.7e-13 Score=141.62 Aligned_cols=105 Identities=22% Similarity=0.379 Sum_probs=89.0
Q ss_pred ccCCCccCeeeccCcceEEEEEcC-CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
..+|+..+.||+|+||.||+|..+ ++..||||.+..... ..++|.+|+++|++++|||||+++++|.+....|+|
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv 294 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM----EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 294 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc----chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEE
Confidence 346888899999999999999954 588999999975432 257899999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||||++|+|.++++.... ..++|..++.|+
T Consensus 295 ~E~~~~g~L~~~l~~~~~-~~~~~~~~~~i~ 324 (495)
T 1opk_A 295 TEFMTYGNLLDYLRECNR-QEVSAVVLLYMA 324 (495)
T ss_dssp EECCTTCBHHHHHHHSCT-TTSCHHHHHHHH
T ss_pred EEccCCCCHHHHHHhcCc-CCCCHHHHHHHH
Confidence 999999999999975432 357888777654
No 207
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=99.40 E-value=6.2e-13 Score=130.11 Aligned_cols=107 Identities=19% Similarity=0.225 Sum_probs=90.6
Q ss_pred ccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|...+.||+|+||.||+|.. .+++.||+|.+...........+.+.+|+.++++++||||+++++++.+.+..|+|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 35689999999999999999994 57899999999765444445567899999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++.... .+++.+...|+
T Consensus 94 ~e~~~~~~L~~~~~~~~---~~~~~~~~~i~ 121 (294)
T 2rku_A 94 LELCRRRSLLELHKRRK---ALTEPEARYYL 121 (294)
T ss_dssp EECCTTCBHHHHHHHHC---SCCHHHHHHHH
T ss_pred EecCCCCCHHHHHHhcC---CCCHHHHHHHH
Confidence 99999999999887532 46777666654
No 208
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=99.40 E-value=2.7e-13 Score=131.51 Aligned_cols=108 Identities=22% Similarity=0.377 Sum_probs=89.2
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|++.+.||+|+||.||+|+ ..+|+.||||.+...........+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 4579999999999999999999 468999999998643211122246789999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++.... ..+++..+..|+
T Consensus 90 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~ 118 (278)
T 3cok_A 90 LEMCHNGEMNRYLKNRV--KPFSENEARHFM 118 (278)
T ss_dssp EECCTTEEHHHHHHTCS--SCCCHHHHHHHH
T ss_pred EecCCCCcHHHHHhhcc--CCCCHHHHHHHH
Confidence 99999999999998543 257777766654
No 209
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=99.40 E-value=6.2e-13 Score=140.47 Aligned_cols=107 Identities=21% Similarity=0.291 Sum_probs=85.8
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCch----------HhHHHHHHHHHHHhhcCCCCcccEEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEM----------ACQQEFLNEVNALTKIRHRNIVKFYGF 529 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~----------~~~~~~~~Ei~~l~~l~H~niv~l~~~ 529 (571)
.+.|.+.+.||+|+||.||+|. ..+++.||||++.+...... ...+.+.+|+.++++++|||||+++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 4679999999999999999999 45789999999976432211 235678999999999999999999999
Q ss_pred EEeCCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 530 CSHALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 530 ~~~~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+.+....|+|||||++|+|.+++.... .+++.....|+
T Consensus 115 ~~~~~~~~lv~e~~~gg~L~~~l~~~~---~~~~~~~~~i~ 152 (504)
T 3q5i_A 115 FEDKKYFYLVTEFYEGGELFEQIINRH---KFDECDAANIM 152 (504)
T ss_dssp EECSSEEEEEEECCTTCBHHHHHHHHS---CCCHHHHHHHH
T ss_pred EEcCCEEEEEEecCCCCcHHHHHHHcC---CCCHHHHHHHH
Confidence 999999999999999999999997542 47777666554
No 210
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=99.40 E-value=3.1e-13 Score=143.04 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=89.3
Q ss_pred ccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|+..+.||+|+||.||+|+. .+|+.||||++.+.........+.+.+|++++++++|||||++++++.+.+..|+|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 35688999999999999999994 58999999999653222222346688999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||++||+|.+++...+. ..+++.....++
T Consensus 263 mEy~~gg~L~~~l~~~~~-~~l~e~~~~~i~ 292 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHMGQ-AGFPEARAVFYA 292 (576)
T ss_dssp ECCCCSCBHHHHHHSSSS-CCCCHHHHHHHH
T ss_pred EEcCCCCcHHHHHHhcCC-CCCCHHHHHHHH
Confidence 999999999999985432 347777666553
No 211
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=99.39 E-value=5.9e-13 Score=129.63 Aligned_cols=109 Identities=28% Similarity=0.391 Sum_probs=90.5
Q ss_pred ccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCeeEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALHSFV 538 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~l 538 (571)
.++|++.+.||+|+||.||+|.. .+++.||||++....... ....++.+|+..+.++ +||||+++++++.+.+..++
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l 88 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGS-VDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI 88 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTS-HHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEeccccccc-HHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence 35699999999999999999994 589999999998654333 3456788999999999 99999999999999999999
Q ss_pred EEeccCCCChhhhhccCCC-ccCCCHHHHhhhc
Q 044615 539 VYEYLEMGSLAMNLSNDAA-AEQFCWTKRMNAI 570 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~~~-~~~l~w~~r~~ia 570 (571)
||||+++|+|.+++..... ...+++.....|+
T Consensus 89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~ 121 (289)
T 1x8b_A 89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLL 121 (289)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEecCCCcHHHHHHhhcccccCCCHHHHHHHH
Confidence 9999999999999975321 1357777766654
No 212
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=99.39 E-value=6.4e-13 Score=131.02 Aligned_cols=107 Identities=17% Similarity=0.254 Sum_probs=90.7
Q ss_pred ccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|++.+.||+|+||.||+|.. .+++.||+|++...........+.+.+|+.++++++||||+++++++...+..|+|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 46799999999999999999994 57899999999765444444467899999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++...+ .+++.....|+
T Consensus 113 ~e~~~~~~L~~~l~~~~---~~~~~~~~~i~ 140 (309)
T 2h34_A 113 MRLINGVDLAAMLRRQG---PLAPPRAVAIV 140 (309)
T ss_dssp EECCCCEEHHHHHHHHC---SCCHHHHHHHH
T ss_pred EEecCCCCHHHHHHhcC---CCCHHHHHHHH
Confidence 99999999999997542 46777666554
No 213
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=99.39 E-value=1.1e-12 Score=126.91 Aligned_cols=105 Identities=20% Similarity=0.238 Sum_probs=77.5
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
++|++.+.||+|+||.||+|. ..+++.||+|++...........+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 579999999999999999999 5689999999997655444444678999999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||+ +|++.+++.... .+++....+|+
T Consensus 93 e~~-~~~l~~~~~~~~---~~~~~~~~~~~ 118 (275)
T 2eue_A 93 EYA-GNELFDYIVQRD---KMSEQEARRFF 118 (275)
T ss_dssp ECC-CEEHHHHHHTSS---SCCHHHHHHHH
T ss_pred hhc-CCcHHHHHHhcC---CCCHHHHHHHH
Confidence 999 678888887543 46777666554
No 214
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=99.39 E-value=5.4e-13 Score=138.02 Aligned_cols=105 Identities=14% Similarity=0.210 Sum_probs=86.7
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|++.+.||+|+||.||+|. ..+|+.||+|++...... ....+.+.+|++++++++|||||++++++.+.+..|+|
T Consensus 10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv 88 (444)
T 3soa_A 10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLS-ARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI 88 (444)
T ss_dssp HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCH-HHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCC-HHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence 4569999999999999999998 568999999999865432 34467799999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
||||++|+|.+++...+ .+++.....|
T Consensus 89 ~E~~~gg~L~~~i~~~~---~~~e~~~~~i 115 (444)
T 3soa_A 89 FDLVTGGELFEDIVARE---YYSEADASHC 115 (444)
T ss_dssp ECCCBCCBHHHHHHHCS---CCCHHHHHHH
T ss_pred EEeCCCCCHHHHHHHcC---CCCHHHHHHH
Confidence 99999999999997543 3566555444
No 215
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=99.39 E-value=2.4e-13 Score=136.65 Aligned_cols=108 Identities=17% Similarity=0.214 Sum_probs=86.3
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCC--CchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLP--DEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFV 538 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~--~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 538 (571)
+.|++.+.||+|+||.||+|. ..+++.||||++..... ......+.+.+|+.++++++|||||++++++.+.+..|+
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l 103 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM 103 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 459999999999999999998 55899999999863211 111125679999999999999999999999999999999
Q ss_pred EEeccCCCChhhhhccCC-CccCCCHHHHhhh
Q 044615 539 VYEYLEMGSLAMNLSNDA-AAEQFCWTKRMNA 569 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~~-~~~~l~w~~r~~i 569 (571)
|||||++|+|.+++.... ....+++.....|
T Consensus 104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i 135 (351)
T 3c0i_A 104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHY 135 (351)
T ss_dssp EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHH
Confidence 999999999998886432 2234666655544
No 216
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=99.39 E-value=4.8e-13 Score=136.78 Aligned_cols=107 Identities=21% Similarity=0.343 Sum_probs=88.6
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCC--eeEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHAL--HSFV 538 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~--~~~l 538 (571)
+.|.+.+.||+|+||.||+|. ..+|+.||||++..... ....+.+.+|++++++++|||||++++++.... ..|+
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~l 86 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF--LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVL 86 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG--GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccc--cchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEE
Confidence 458899999999999999999 45799999999974322 123567889999999999999999999998765 6799
Q ss_pred EEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 539 VYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||||+++|+|.+++........+++..+..|+
T Consensus 87 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~ 118 (396)
T 4eut_A 87 IMEFCPCGSLYTVLEEPSNAYGLPESEFLIVL 118 (396)
T ss_dssp EECCCTTEEHHHHTTSGGGTTCCCHHHHHHHH
T ss_pred EEecCCCCCHHHHHHhhhcccCCCHHHHHHHH
Confidence 99999999999999865444447888777664
No 217
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=99.39 E-value=8.4e-13 Score=132.37 Aligned_cols=105 Identities=27% Similarity=0.355 Sum_probs=88.5
Q ss_pred CCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEEe
Q 044615 463 NFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYE 541 (571)
Q Consensus 463 ~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 541 (571)
.|+..+.||+|+||.||+|+ ..+++.||||++...........+.+.+|++++++++|||||++++++.+.+..|+|||
T Consensus 55 ~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 134 (348)
T 1u5q_A 55 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME 134 (348)
T ss_dssp HEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred heeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEEe
Confidence 48888999999999999999 56899999999986654444556789999999999999999999999999999999999
Q ss_pred ccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 542 YLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 542 ~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|++ |++.+++.... ..++|..+..|+
T Consensus 135 ~~~-g~l~~~l~~~~--~~l~~~~~~~i~ 160 (348)
T 1u5q_A 135 YCL-GSASDLLEVHK--KPLQEVEIAAVT 160 (348)
T ss_dssp CCS-EEHHHHHHHHT--SCCCHHHHHHHH
T ss_pred cCC-CCHHHHHHHhc--CCCCHHHHHHHH
Confidence 998 68888886433 257777776654
No 218
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=99.39 E-value=7.3e-13 Score=132.24 Aligned_cols=107 Identities=19% Similarity=0.234 Sum_probs=90.8
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|.+.+.||+|+||.||++. ..+++.||+|++...........+.+.+|+.++++++||||+++++++.+.+..|+|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 4568999999999999999999 457899999999765444445567899999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++.... .+++.++..|+
T Consensus 120 ~e~~~~~~L~~~~~~~~---~l~~~~~~~i~ 147 (335)
T 2owb_A 120 LELCRRRSLLELHKRRK---ALTEPEARYYL 147 (335)
T ss_dssp ECCCTTCBHHHHHHHHC---SCCHHHHHHHH
T ss_pred EecCCCCCHHHHHhccC---CCCHHHHHHHH
Confidence 99999999999987532 46777666654
No 219
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.39 E-value=6.6e-13 Score=127.84 Aligned_cols=103 Identities=21% Similarity=0.356 Sum_probs=88.1
Q ss_pred cCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEEe
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYE 541 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 541 (571)
++|+..+.||+|+||.||+|...+++.||+|.+...... .+.+.+|++++++++||||+++++++.+.+..|+|||
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 83 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS----EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTE 83 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBC----HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEC
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCC----HHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEe
Confidence 468889999999999999999778889999999765322 3678999999999999999999999999999999999
Q ss_pred ccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 542 YLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 542 ~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|+++|+|.+++..... .+++.....++
T Consensus 84 ~~~~~~L~~~~~~~~~--~~~~~~~~~~~ 110 (267)
T 3t9t_A 84 FMEHGCLSDYLRTQRG--LFAAETLLGMC 110 (267)
T ss_dssp CCTTCBHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCCCCcHHHHHhhCcc--cCCHHHHHHHH
Confidence 9999999999975432 46777666553
No 220
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=99.39 E-value=6.6e-13 Score=139.61 Aligned_cols=106 Identities=24% Similarity=0.329 Sum_probs=89.9
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
+.|+..+.||+|+||.||+|. ..+|+.||||++.+.........+.+.+|+.++++++|||||++++++.+.+..|+||
T Consensus 26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 105 (484)
T 3nyv_A 26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVG 105 (484)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 358999999999999999999 4589999999997655443344678999999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||+++|+|.+++.... .+++.....|+
T Consensus 106 e~~~~~~L~~~~~~~~---~~~~~~~~~i~ 132 (484)
T 3nyv_A 106 EVYTGGELFDEIISRK---RFSEVDAARII 132 (484)
T ss_dssp CCCCSCBHHHHHHTCS---CCBHHHHHHHH
T ss_pred ecCCCCCHHHHHHhcC---CCCHHHHHHHH
Confidence 9999999999997543 46666665553
No 221
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=99.38 E-value=4.9e-13 Score=135.39 Aligned_cols=100 Identities=20% Similarity=0.319 Sum_probs=79.6
Q ss_pred ccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEEeccC
Q 044615 466 DGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLE 544 (571)
Q Consensus 466 ~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 544 (571)
..+.||+|+||.||+|. ..+|+.||+|++.... ....+.+.+|++++++++|||||++++++.+.+..|+||||++
T Consensus 93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~ 169 (373)
T 2x4f_A 93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRG---MKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVD 169 (373)
T ss_dssp EEEECC-----CEEEEEETTTCCEEEEEEEECCS---HHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccc---cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCC
Confidence 35679999999999998 5689999999997543 2345789999999999999999999999999999999999999
Q ss_pred CCChhhhhccCCCccCCCHHHHhhhc
Q 044615 545 MGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 545 ~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+|+|.+++.... ..++|..+..|+
T Consensus 170 ~~~L~~~l~~~~--~~l~~~~~~~i~ 193 (373)
T 2x4f_A 170 GGELFDRIIDES--YNLTELDTILFM 193 (373)
T ss_dssp TCEEHHHHHHTG--GGCCHHHHHHHH
T ss_pred CCcHHHHHHhcC--CCCCHHHHHHHH
Confidence 999999997532 247777766653
No 222
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=99.38 E-value=2.1e-12 Score=126.31 Aligned_cols=104 Identities=20% Similarity=0.208 Sum_probs=84.8
Q ss_pred CCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEEe
Q 044615 463 NFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYE 541 (571)
Q Consensus 463 ~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 541 (571)
+|.....||+|+||.||+|. ..+++.||||.+..... ...+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 99 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDS---RYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFME 99 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC------HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCch---HHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEE
Confidence 35556689999999999999 56789999999976432 235679999999999999999999999999999999999
Q ss_pred ccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 542 YLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 542 ~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
|+++|+|.+++........+++.....|
T Consensus 100 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~ 127 (295)
T 2clq_A 100 QVPGGSLSALLRSKWGPLKDNEQTIGFY 127 (295)
T ss_dssp CCSEEEHHHHHHHTTCCCTTCHHHHHHH
T ss_pred eCCCCCHHHHHHhhccCCCccHHHHHHH
Confidence 9999999999986544445566655443
No 223
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=99.38 E-value=2.2e-13 Score=135.70 Aligned_cols=106 Identities=20% Similarity=0.241 Sum_probs=86.4
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|.+.+.||+|+||.||+|. ..+++.||||++...........+.+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 4579999999999999999999 568999999998643211112235789999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+ +|+|.+++...+ .+++.....++
T Consensus 88 ~E~~-~g~l~~~l~~~~---~l~~~~~~~i~ 114 (336)
T 3h4j_B 88 IEYA-GGELFDYIVEKK---RMTEDEGRRFF 114 (336)
T ss_dssp ECCC-CEEHHHHHHHHC---SCCHHHHHHHH
T ss_pred EECC-CCcHHHHHHHcC---CCCHHHHHHHH
Confidence 9999 689999997543 46666665543
No 224
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.38 E-value=2.2e-11 Score=124.35 Aligned_cols=284 Identities=11% Similarity=-0.002 Sum_probs=158.6
Q ss_pred hhcCCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCc--------
Q 044615 43 ELVRAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENI-------- 108 (571)
Q Consensus 43 ~l~~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~-------- 108 (571)
.+.++.+|+.+.+..+ ++ |.++.+|+.+++..+ ++. .-...|.++.+|+.+.+..+-
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~-------I~~~aF~~c~~L~~i~~p~~l~~i~~~aF 136 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKM-------IGRCTFSGCYALKSILLPLMLKSIGVEAF 136 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCE-------ECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceE-------ccchhhcccccchhhcccCceeeecceee
Confidence 3556677777777543 32 666777777777543 221 112234445555544443221
Q ss_pred -------------CcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEE
Q 044615 109 -------------LNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILD 175 (571)
Q Consensus 109 -------------i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 175 (571)
+......+|.++++|+.+.+.++. ..+....|.++.+|+.+.+..| +.......|.++..|+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred ecccccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 111223345555566666665433 2244445555666666665544 3333344555555666555
Q ss_pred ccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccc
Q 044615 176 LSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFH 255 (571)
Q Consensus 176 L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (571)
+..+... +......... |+.+.+..+ +.......+..+..++.+.+..+... .....|..+..++.+....+.+
T Consensus 215 ~~~~~~~--i~~~~~~~~~-l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i- 288 (394)
T 4fs7_A 215 FPNSLYY--LGDFALSKTG-VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV- 288 (394)
T ss_dssp CCTTCCE--ECTTTTTTCC-CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE-
T ss_pred cCCCceE--eehhhcccCC-CceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee-
Confidence 5443322 2222222232 666655432 22233445566667777776655333 4445566667777766655433
Q ss_pred cccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccc
Q 044615 256 KSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFE 335 (571)
Q Consensus 256 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 335 (571)
....+..+.+|+.+.+.++ ++......|.++.+|+.++|..+ ++.+...+|.++++|+.+++..| ++.+...+|.
T Consensus 289 --~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 289 --PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp --CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred --ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 2345667777887777654 44455566777778888877643 55555667777888888887665 6666667788
Q ss_pred cCCCCCEEECcCC
Q 044615 336 EMHWLSCIDISYN 348 (571)
Q Consensus 336 ~l~~L~~L~ls~N 348 (571)
++.+|+.+++..+
T Consensus 364 ~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 364 GCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEEEEEGG
T ss_pred CCCCCCEEEECCC
Confidence 8888887777543
No 225
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=99.38 E-value=5.6e-13 Score=134.41 Aligned_cols=100 Identities=23% Similarity=0.378 Sum_probs=83.0
Q ss_pred HHHHHHHccCCCccCeeeccCcceEEEEEc------CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccE
Q 044615 454 HEEIIRATNNFDDGHCIGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKF 526 (571)
Q Consensus 454 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l 526 (571)
..+.....++|++.+.||+|+||.||+|+. .+++.||||++.... .....+.+.+|++++.++ +|||||++
T Consensus 14 ~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 14 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred cccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcC--CHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 345555667899999999999999999972 356789999997543 233457799999999999 88999999
Q ss_pred EEEEEeCC-eeEEEEeccCCCChhhhhccC
Q 044615 527 YGFCSHAL-HSFVVYEYLEMGSLAMNLSND 555 (571)
Q Consensus 527 ~~~~~~~~-~~~lv~e~~~~G~L~~~l~~~ 555 (571)
++++.+.+ ..++||||+++|+|.++++..
T Consensus 92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~ 121 (359)
T 3vhe_A 92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSK 121 (359)
T ss_dssp EEEECSTTSCCEEEEECCTTEEHHHHHHTT
T ss_pred eeeeecCCCceEEEEEecCCCcHHHHHHhc
Confidence 99998755 489999999999999999864
No 226
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=99.37 E-value=5.5e-13 Score=140.67 Aligned_cols=108 Identities=20% Similarity=0.246 Sum_probs=88.9
Q ss_pred cCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
++|...+.||+|+||+||+|+. .+|+.||||++.+.........+.+.+|++++++++|||||++++++.+....|+||
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 264 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM 264 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence 5688899999999999999994 579999999996532222223567899999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCC-ccCCCHHHHhhh
Q 044615 541 EYLEMGSLAMNLSNDAA-AEQFCWTKRMNA 569 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~-~~~l~w~~r~~i 569 (571)
||++||+|.+++..... ...+++.....+
T Consensus 265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~ 294 (543)
T 3c4z_A 265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFY 294 (543)
T ss_dssp CCCTTCBHHHHHHTSSTTSCSCCHHHHHHH
T ss_pred EeccCCCHHHHHHHhhcccccccHHHHHHH
Confidence 99999999999976432 335777766554
No 227
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=99.37 E-value=9.6e-13 Score=127.52 Aligned_cols=103 Identities=19% Similarity=0.263 Sum_probs=87.2
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
+.|++.+.||+|+||.||+|. ..++..||+|++....... .+.+.+|++++++++||||+++++++.+....|+||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~---~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (277)
T 3f3z_A 9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVED---VDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVM 85 (277)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSC---HHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccch---HHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEE
Confidence 458999999999999999999 4578899999997543332 567999999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||+++|+|.+++.... .+++.....|+
T Consensus 86 e~~~~~~L~~~~~~~~---~~~~~~~~~i~ 112 (277)
T 3f3z_A 86 ELCTGGELFERVVHKR---VFRESDAARIM 112 (277)
T ss_dssp ECCCSCBHHHHHHHHC---SCCHHHHHHHH
T ss_pred eccCCCcHHHHHHHcC---CCCHHHHHHHH
Confidence 9999999999987543 36676666554
No 228
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=99.37 E-value=1e-12 Score=131.96 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=80.8
Q ss_pred ccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.+.|++.+.||+|+||.||+|+. .+++.||||++.... ..+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 126 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV-----DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLV 126 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC---------------CHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch-----hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEE
Confidence 45689999999999999999994 478899999997542 235688999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++...+ .+++.....|+
T Consensus 127 ~e~~~~~~L~~~l~~~~---~~~~~~~~~i~ 154 (349)
T 2w4o_A 127 LELVTGGELFDRIVEKG---YYSERDAADAV 154 (349)
T ss_dssp ECCCCSCBHHHHHTTCS---SCCHHHHHHHH
T ss_pred EEeCCCCCHHHHHHhcC---CCCHHHHHHHH
Confidence 99999999999997543 46777666554
No 229
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=99.37 E-value=7.5e-13 Score=133.85 Aligned_cols=107 Identities=22% Similarity=0.343 Sum_probs=88.5
Q ss_pred cCCCccCeeeccCcceEEEEEcC------CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCe
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLP------TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALH 535 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 535 (571)
++|++.+.||+|+||.||+|... +++.||||++.... ......++.+|+.++++++|||||++++++.+...
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~ 148 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC--SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP 148 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccccc--ChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCC
Confidence 46889999999999999999832 46789999996432 23445679999999999999999999999999999
Q ss_pred eEEEEeccCCCChhhhhccCCC----ccCCCHHHHhhhc
Q 044615 536 SFVVYEYLEMGSLAMNLSNDAA----AEQFCWTKRMNAI 570 (571)
Q Consensus 536 ~~lv~e~~~~G~L~~~l~~~~~----~~~l~w~~r~~ia 570 (571)
.|+||||+++|+|.+++..... ...++|..++.|+
T Consensus 149 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~ 187 (367)
T 3l9p_A 149 RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 187 (367)
T ss_dssp CEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHH
Confidence 9999999999999999985432 2358888777664
No 230
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=99.37 E-value=6.8e-13 Score=129.24 Aligned_cols=107 Identities=17% Similarity=0.215 Sum_probs=88.3
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
+.|.+.+.||+|+||.||+|. ..++..||+|.+...... ...+.+.+|++++++++||||+++++++.+....|+||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 99 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQ--VPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVM 99 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCC--SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccc--hhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEE
Confidence 358899999999999999999 457999999999754322 23577999999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCC-CccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDA-AAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~-~~~~l~w~~r~~ia 570 (571)
||+++|+|.+++.... ....+++.....|+
T Consensus 100 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~ 130 (285)
T 3is5_A 100 ETCEGGELLERIVSAQARGKALSEGYVAELM 130 (285)
T ss_dssp CCCSCCBHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EeCCCCcHHHHHHhhhhcccCCCHHHHHHHH
Confidence 9999999999996431 12357777666554
No 231
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=99.37 E-value=1e-12 Score=127.42 Aligned_cols=109 Identities=24% Similarity=0.341 Sum_probs=90.1
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEe--CCeeE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSH--ALHSF 537 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~--~~~~~ 537 (571)
.++|++.+.||+|+||.||+|. ..+++.||+|.+...... ....+.+.+|++++++++||||+++++++.+ ....|
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 83 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT-EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLY 83 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCC-HHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEE
Confidence 4579999999999999999999 458999999999765433 3446789999999999999999999998864 57899
Q ss_pred EEEeccCCCChhhhhccCC-CccCCCHHHHhhhc
Q 044615 538 VVYEYLEMGSLAMNLSNDA-AAEQFCWTKRMNAI 570 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~-~~~~l~w~~r~~ia 570 (571)
+||||+++|+|.+++.... ....++|....+|+
T Consensus 84 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~ 117 (279)
T 2w5a_A 84 IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVM 117 (279)
T ss_dssp EEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHH
Confidence 9999999999999997532 22357888777664
No 232
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=4.9e-14 Score=142.24 Aligned_cols=95 Identities=22% Similarity=0.271 Sum_probs=45.8
Q ss_pred CCCCEEEcccCccccc----cchhhccCCCCCEEEcCCccCccCc----chhhhcccCCCEEEccCCcCCcc----cchh
Q 044615 242 IQLEYLDLSANTFHKS----IPESLSNLVKLHYLNLSNNQFSQKI----PNKIEKLIHLSELDLSHNIFREE----IPSQ 309 (571)
Q Consensus 242 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~ 309 (571)
++|+.|+|++|.++.. ++..+..+++|++|+|++|.++... +..+...++|+.|+|++|.++.. +...
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 3444444444444321 2223344455555555555554321 23344445566666666655432 2233
Q ss_pred ccCCCCCCEEEccCCcCcccccccccc
Q 044615 310 ICSMQSLEKLNLSHNNLSGSIPRCFEE 336 (571)
Q Consensus 310 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 336 (571)
+...++|++|+|++|.|+......+..
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 344566667777777666544444443
No 233
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=99.37 E-value=1.6e-12 Score=126.59 Aligned_cols=105 Identities=28% Similarity=0.447 Sum_probs=85.9
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHh----HHHHHHHHHHHhhcCCCCcccEEEEEEeCCee
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMAC----QQEFLNEVNALTKIRHRNIVKFYGFCSHALHS 536 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~----~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 536 (571)
++|+..+.||+|+||.||+|+ ..+++.||||++.......... .+.+.+|++++++++||||+++++++.+..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-- 96 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-- 96 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence 568999999999999999999 4689999999997654332221 267999999999999999999999986554
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
++||||+++|+|.+++.+... .++|..+..|+
T Consensus 97 ~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~ 128 (287)
T 4f0f_A 97 RMVMEFVPCGDLYHRLLDKAH--PIKWSVKLRLM 128 (287)
T ss_dssp EEEEECCTTCBHHHHHHCTTS--CCCHHHHHHHH
T ss_pred eEEEEecCCCCHHHHHhcccC--CccHHHHHHHH
Confidence 799999999999999975433 57887777654
No 234
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=99.37 E-value=1.1e-12 Score=127.54 Aligned_cols=106 Identities=22% Similarity=0.289 Sum_probs=88.4
Q ss_pred cCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCc---hHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDE---MACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSF 537 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 537 (571)
++|++.+.||+|+||.||+|.. .+++.||+|.+....... ....+.+.+|+.++++++||||+++++++.+....+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 3588999999999999999994 479999999987543221 123578999999999999999999999999999999
Q ss_pred EEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 538 VVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+||||+++|+|.+++... ..+++..+..++
T Consensus 85 lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~ 114 (283)
T 3bhy_A 85 LILELVSGGELFDFLAEK---ESLTEDEATQFL 114 (283)
T ss_dssp EEEECCCSCBHHHHHHHH---SSCCHHHHHHHH
T ss_pred EEEeecCCCcHHHHHHhc---CCCCHHHHHHHH
Confidence 999999999999999753 246777766654
No 235
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=99.37 E-value=1.1e-12 Score=129.51 Aligned_cols=105 Identities=23% Similarity=0.327 Sum_probs=84.4
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
.++|++.+.||+|+||.||+|+..+|+.||+|++...... ....+.+.+|++++++++|||||++++++.+.+..|+||
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 98 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAED-EGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF 98 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC-------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEeccccc-chhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence 3569999999999999999999878999999999754322 233567899999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
||+++ +|.+++..... .+++.....|
T Consensus 99 e~~~~-~l~~~~~~~~~--~~~~~~~~~~ 124 (311)
T 3niz_A 99 EFMEK-DLKKVLDENKT--GLQDSQIKIY 124 (311)
T ss_dssp ECCSE-EHHHHHHTCTT--CCCHHHHHHH
T ss_pred cCCCC-CHHHHHHhccC--CCCHHHHHHH
Confidence 99985 88888875432 4666655544
No 236
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=99.37 E-value=3.7e-13 Score=130.65 Aligned_cols=108 Identities=24% Similarity=0.462 Sum_probs=87.9
Q ss_pred HccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEE
Q 044615 460 ATNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFV 538 (571)
Q Consensus 460 ~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 538 (571)
+.++|++.+.||+|+||.||+|. ..++..||||++...........+.+.+|++++++++||||+++++++.+.+..++
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 86 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL 86 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence 34679999999999999999998 55788999999864322222235678999999999999999999999999999999
Q ss_pred EEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 539 VYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||||+++|+|.+++.... .+++.....|+
T Consensus 87 v~e~~~~~~l~~~l~~~~---~~~~~~~~~~~ 115 (279)
T 3fdn_A 87 ILEYAPLGTVYRELQKLS---KFDEQRTATYI 115 (279)
T ss_dssp EECCCTTEEHHHHHHHHS---SCCHHHHHHHH
T ss_pred EEecCCCCcHHHHHHhcC---CCCHHHHHHHH
Confidence 999999999999997542 36666655543
No 237
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=99.37 E-value=1e-12 Score=130.35 Aligned_cols=106 Identities=19% Similarity=0.245 Sum_probs=87.9
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCch---HhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEM---ACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSF 537 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 537 (571)
+.|++.+.||+|+||.||+|. ..+|+.||||.+........ ...+.+.+|+.++++++||||+++++++.+....|
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 91 (321)
T 2a2a_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV 91 (321)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence 458999999999999999999 45799999999975433221 13577999999999999999999999999999999
Q ss_pred EEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 538 VVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+||||+++|+|.+++.... .+++.....|+
T Consensus 92 lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~ 121 (321)
T 2a2a_A 92 LILELVSGGELFDFLAQKE---SLSEEEATSFI 121 (321)
T ss_dssp EEECCCCSCBHHHHHHTCS---CEEHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHhcC---CCCHHHHHHHH
Confidence 9999999999999997532 46666665553
No 238
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=99.36 E-value=2.1e-12 Score=127.45 Aligned_cols=105 Identities=22% Similarity=0.300 Sum_probs=87.6
Q ss_pred cCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
++|+..+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESED-DPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVF 81 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeecccc-chHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEE
Confidence 5789999999999999999994 5799999999876532 2344567899999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||+++|+|.+++.... .+++.....|+
T Consensus 82 e~~~~~~l~~~~~~~~---~~~~~~~~~i~ 108 (311)
T 4agu_A 82 EYCDHTVLHELDRYQR---GVPEHLVKSIT 108 (311)
T ss_dssp ECCSEEHHHHHHHTSS---CCCHHHHHHHH
T ss_pred EeCCCchHHHHHhhhc---CCCHHHHHHHH
Confidence 9999999999887432 36666655543
No 239
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=99.36 E-value=1.6e-12 Score=129.76 Aligned_cols=108 Identities=22% Similarity=0.388 Sum_probs=87.6
Q ss_pred ccCCCccCeeeccCcceEEEEEc--------CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL--------PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCS 531 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~--------~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~ 531 (571)
.++|.+.+.||+|+||.||+|.. .++..||||++.... .....+.+.+|+++++++ +||||+++++++.
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~ 111 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNIINLLGACT 111 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC--cHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEc
Confidence 35789999999999999999984 356789999997543 234467799999999999 9999999999999
Q ss_pred eCCeeEEEEeccCCCChhhhhccCCC-------------ccCCCHHHHhhhc
Q 044615 532 HALHSFVVYEYLEMGSLAMNLSNDAA-------------AEQFCWTKRMNAI 570 (571)
Q Consensus 532 ~~~~~~lv~e~~~~G~L~~~l~~~~~-------------~~~l~w~~r~~ia 570 (571)
+.+..|+||||+++|+|.+++..... ...++|..++.|+
T Consensus 112 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 163 (334)
T 2pvf_A 112 QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCT 163 (334)
T ss_dssp SSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHH
T ss_pred cCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHH
Confidence 99999999999999999999986432 1347887777654
No 240
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=99.36 E-value=6.2e-13 Score=138.47 Aligned_cols=104 Identities=21% Similarity=0.310 Sum_probs=86.5
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
.++|+..+.||+|+||.||+|...++..||||.+..... ..+.|.+|++++++++|||||++++++. .+..|+||
T Consensus 187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~ 261 (454)
T 1qcf_A 187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSM----SVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIIT 261 (454)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSB----CHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred hHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCc----cHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEE
Confidence 456888999999999999999987788999999976432 2578999999999999999999999986 66789999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||++|+|.++++... ...+++..+++|+
T Consensus 262 e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~ 290 (454)
T 1qcf_A 262 EFMAKGSLLDFLKSDE-GSKQPLPKLIDFS 290 (454)
T ss_dssp CCCTTCBHHHHHHSHH-HHTCCHHHHHHHH
T ss_pred eecCCCcHHHHHHhcc-CCCCCHHHHHHHH
Confidence 9999999999998542 2246676666553
No 241
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=99.36 E-value=7e-13 Score=128.37 Aligned_cols=107 Identities=22% Similarity=0.293 Sum_probs=87.9
Q ss_pred ccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|.+.+.||+|+||.||+|.. .+|+.||||.+...........+.+.+|+.++++++||||+++++++.+.+..|+|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 35799999999999999999995 48999999998643221222356789999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++.... .+++.....++
T Consensus 90 ~e~~~~~~L~~~l~~~~---~~~~~~~~~~~ 117 (276)
T 2h6d_A 90 MEYVSGGELFDYICKHG---RVEEMEARRLF 117 (276)
T ss_dssp EECCCSCBHHHHHHHHC---SCCHHHHHHHH
T ss_pred EeccCCCcHHHHHhccC---CCCHHHHHHHH
Confidence 99999999999997542 36666665543
No 242
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=99.36 E-value=5.1e-13 Score=130.80 Aligned_cols=104 Identities=30% Similarity=0.436 Sum_probs=85.9
Q ss_pred cCCCccCeeeccCcceEEEEEc-----CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC--C
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-----PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA--L 534 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~ 534 (571)
++|++.+.||+|+||.||+|++ .+++.||||++.... ....+.|.+|++++++++||||+++++++... .
T Consensus 10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 86 (295)
T 3ugc_A 10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST---EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR 86 (295)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCC---HHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHT
T ss_pred HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCC
Confidence 5688999999999999999983 368899999997532 34457899999999999999999999998653 5
Q ss_pred eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 535 HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
..++||||+++|+|.+++..... .++|..+..|+
T Consensus 87 ~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~ 120 (295)
T 3ugc_A 87 NLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYT 120 (295)
T ss_dssp SCEEEEECCTTCBHHHHHHHCGG--GCCHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHhccc--ccCHHHHHHHH
Confidence 58999999999999999975432 47777776654
No 243
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=99.36 E-value=8.6e-13 Score=131.20 Aligned_cols=105 Identities=23% Similarity=0.325 Sum_probs=79.5
Q ss_pred ccCCCccCeeeccCcceEEEEEc----CCCCEEEEEEccCCCCC-chHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCe
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL----PTGEIVDVKKFHSPLPD-EMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALH 535 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~~~-~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 535 (571)
.++|++.+.||+|+||.||+|+. .+++.||+|++.+.... .......+.+|+.++++++|||||++++++.+.+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 35699999999999999999984 47899999999765322 12334568899999999999999999999999999
Q ss_pred eEEEEeccCCCChhhhhccCCCccCCCHHHHhh
Q 044615 536 SFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMN 568 (571)
Q Consensus 536 ~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ 568 (571)
.|+||||+++|+|.+++...+ .+++.....
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~ 125 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLEREG---IFMEDTACF 125 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHHS---SCCHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHhCC---CCCHHHHHH
Confidence 999999999999999997532 345544433
No 244
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=99.36 E-value=6.5e-13 Score=129.54 Aligned_cols=104 Identities=18% Similarity=0.346 Sum_probs=85.9
Q ss_pred cCCCccCeeeccCcceEEEEEc-CCC-------CEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-PTG-------EIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA 533 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-~~~-------~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~ 533 (571)
++|.+.+.||+|+||.||+|.. .++ ..||+|.+.... ....+.+.+|++++++++||||+++++++.+.
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 84 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAH---RNYSESFFEAASMMSKLSHKHLVLNYGVCVCG 84 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGG---GGGHHHHHHHHHHHHTSCCTTBCCEEEEECCT
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhccccc---HHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeC
Confidence 4688999999999999999984 344 469999986432 23457899999999999999999999999999
Q ss_pred CeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 534 LHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 534 ~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+..|+||||+++|+|.+++..... .+++..+..|+
T Consensus 85 ~~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~ 119 (289)
T 4fvq_A 85 DENILVQEFVKFGSLDTYLKKNKN--CINILWKLEVA 119 (289)
T ss_dssp TCCEEEEECCTTCBHHHHHHHTGG--GCCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHhCCC--CCCHHHHHHHH
Confidence 999999999999999999985432 36676666554
No 245
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=99.36 E-value=1.1e-12 Score=130.16 Aligned_cols=101 Identities=25% Similarity=0.312 Sum_probs=83.8
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCC----ee
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHAL----HS 536 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~----~~ 536 (571)
.++|++.+.||+|+||.||+|+.. ++.||||++... ......+.+|+.++++++|||||++++++.+.. ..
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 97 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQ----DKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDL 97 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGG----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecC----chHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceE
Confidence 356999999999999999999864 789999998643 233455677999999999999999999998754 36
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|+||||+++|+|.++++.. .++|..+..|+
T Consensus 98 ~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~ 127 (322)
T 3soc_A 98 WLITAFHEKGSLSDFLKAN----VVSWNELCHIA 127 (322)
T ss_dssp EEEEECCTTCBHHHHHHHC----CBCHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHhc----CCCHHHHHHHH
Confidence 9999999999999999753 37888777664
No 246
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=99.36 E-value=1.5e-12 Score=126.56 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=88.6
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|++.+.||+|+||.||+|. ..+++.||+|++...... ....+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v 83 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 83 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCC-HHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEE
Confidence 4679999999999999999999 457999999999754332 34457789999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++.... .+++.....++
T Consensus 84 ~e~~~~~~l~~~~~~~~---~~~~~~~~~~~ 111 (284)
T 3kk8_A 84 FDLVTGGELFEDIVARE---FYSEADASHCI 111 (284)
T ss_dssp ECCCCSCBHHHHHHHHS---SCCHHHHHHHH
T ss_pred EecCCCCCHHHHHHhcC---CCCHHHHHHHH
Confidence 99999999999887542 46666655543
No 247
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=99.36 E-value=7.2e-13 Score=137.84 Aligned_cols=104 Identities=21% Similarity=0.357 Sum_probs=86.5
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
.++|+..+.||+|+||.||+|....+..||||.+...... .+.|.+|++++++++|||||++++++.+ +..|+||
T Consensus 183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~ 257 (452)
T 1fmk_A 183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS----PEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVT 257 (452)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSC----HHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEE
T ss_pred hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCC----HHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEe
Confidence 3468889999999999999999877778999999764322 4679999999999999999999999865 6789999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||+++|+|.++++... ...+++...+.|+
T Consensus 258 e~~~~gsL~~~l~~~~-~~~~~~~~~~~i~ 286 (452)
T 1fmk_A 258 EYMSKGSLLDFLKGET-GKYLRLPQLVDMA 286 (452)
T ss_dssp CCCTTCBHHHHHSHHH-HTTCCHHHHHHHH
T ss_pred hhhcCCCHHHHHHhcC-CCCCCHHHHHHHH
Confidence 9999999999997432 2347777776654
No 248
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=99.36 E-value=5.6e-13 Score=132.95 Aligned_cols=110 Identities=25% Similarity=0.360 Sum_probs=88.3
Q ss_pred HHccCCCccCeeeccCcceEEEEEc-CCC-----CEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEE
Q 044615 459 RATNNFDDGHCIGNGGQGSVYKAKL-PTG-----EIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCS 531 (571)
Q Consensus 459 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~-----~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~ 531 (571)
...++|...+.||+|+||.||+|.. .++ ..||+|.+.... .....+.+.+|+++++++ +||||+++++++.
T Consensus 43 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~ 120 (333)
T 2i1m_A 43 FPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA--HADEKEALMSELKIMSHLGQHENIVNLLGACT 120 (333)
T ss_dssp CCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred CCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc--ChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence 3456799999999999999999984 333 479999997543 233467799999999999 8999999999999
Q ss_pred eCCeeEEEEeccCCCChhhhhccCCC-----------ccCCCHHHHhhhc
Q 044615 532 HALHSFVVYEYLEMGSLAMNLSNDAA-----------AEQFCWTKRMNAI 570 (571)
Q Consensus 532 ~~~~~~lv~e~~~~G~L~~~l~~~~~-----------~~~l~w~~r~~ia 570 (571)
+.+..|+||||+++|+|.+++..... ...+++...+.|+
T Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (333)
T 2i1m_A 121 HGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFS 170 (333)
T ss_dssp SSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHH
T ss_pred cCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHH
Confidence 99999999999999999999975321 2346777666554
No 249
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=99.36 E-value=1.3e-12 Score=128.92 Aligned_cols=93 Identities=29% Similarity=0.443 Sum_probs=80.7
Q ss_pred ccCCCccCeeeccCcceEEEEEc------CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCC
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHAL 534 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 534 (571)
.++|.+.+.||+|+||.||+|.. .+++.||||++.... .....+.+.+|++++++++||||+++++++.+.+
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~ 99 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA--SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDG 99 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC--CHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCC
Confidence 45688999999999999999973 245789999997543 2344678999999999999999999999999999
Q ss_pred eeEEEEeccCCCChhhhhccC
Q 044615 535 HSFVVYEYLEMGSLAMNLSND 555 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~ 555 (571)
..|+||||+++|+|.+++...
T Consensus 100 ~~~lv~e~~~~~~L~~~l~~~ 120 (314)
T 2ivs_A 100 PLLLIVEYAKYGSLRGFLRES 120 (314)
T ss_dssp SCEEEEECCTTCBHHHHHHHT
T ss_pred ceEEEEeecCCCCHHHHHHHH
Confidence 999999999999999999854
No 250
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=99.36 E-value=1.3e-12 Score=128.04 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=81.4
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCc-----------------------hHhHHHHHHHHHHHh
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDE-----------------------MACQQEFLNEVNALT 516 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~-----------------------~~~~~~~~~Ei~~l~ 516 (571)
.++|++.+.||+|+||.||+|. ..+++.||||++....... ....+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 4579999999999999999998 5578999999997543211 112356899999999
Q ss_pred hcCCCCcccEEEEEEe--CCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 517 KIRHRNIVKFYGFCSH--ALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 517 ~l~H~niv~l~~~~~~--~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+++||||+++++++.+ ....|+||||+++|+|.+++.. ..+++.....++
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~----~~~~~~~~~~~~ 143 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL----KPLSEDQARFYF 143 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS----SCCCHHHHHHHH
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc----CCCCHHHHHHHH
Confidence 9999999999999987 5678999999999999887643 246777666553
No 251
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=99.36 E-value=1.8e-12 Score=130.81 Aligned_cols=103 Identities=22% Similarity=0.323 Sum_probs=87.7
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
++|+..+.||+|+||.||+|. ..+++.||+|++.... .....+.+.+|++++++++||||+++++++.+.+..|+||
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 110 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM 110 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC--CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc--CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEE
Confidence 568999999999999999999 4589999999997653 2344678999999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
||+++|+|.+++...+ .+++.....|
T Consensus 111 e~~~~~~L~~~l~~~~---~~~~~~~~~i 136 (360)
T 3eqc_A 111 EHMDGGSLDQVLKKAG---RIPEQILGKV 136 (360)
T ss_dssp CCCTTCBHHHHHHHHS---SCCHHHHHHH
T ss_pred ECCCCCCHHHHHHHcC---CCCHHHHHHH
Confidence 9999999999997543 3566655544
No 252
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=99.36 E-value=9.3e-13 Score=128.37 Aligned_cols=105 Identities=22% Similarity=0.384 Sum_probs=89.0
Q ss_pred ccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|++.+.||+|+||.||+|.. .++..||+|.+.... ...+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v 87 (288)
T 3kfa_A 12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 87 (288)
T ss_dssp GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS----THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEE
T ss_pred ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH----HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEE
Confidence 45688999999999999999994 468899999997542 2357799999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++..... ..+++..+..|+
T Consensus 88 ~e~~~~~~L~~~~~~~~~-~~~~~~~~~~i~ 117 (288)
T 3kfa_A 88 TEFMTYGNLLDYLRECNR-QEVSAVVLLYMA 117 (288)
T ss_dssp EECCTTEEHHHHHHHCCT-TTSCHHHHHHHH
T ss_pred EEcCCCCcHHHHHHhccc-CCccHhHHHHHH
Confidence 999999999999975432 357787776654
No 253
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=99.35 E-value=2.9e-12 Score=126.64 Aligned_cols=103 Identities=18% Similarity=0.289 Sum_probs=84.7
Q ss_pred cCCCcc-CeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCeeEE
Q 044615 462 NNFDDG-HCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALHSFV 538 (571)
Q Consensus 462 ~~~~~~-~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~l 538 (571)
+.|++. +.||+|+||.||+|. ..+++.||||++...... ..+.+.+|++++.++ +||||+++++++.+.+..|+
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~l 88 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGH---IRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYL 88 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSC---CHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcch---hHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEE
Confidence 457774 789999999999999 558999999999765322 256789999999884 79999999999999999999
Q ss_pred EEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 539 VYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||||+++|+|.+++.... .+++.....|+
T Consensus 89 v~e~~~~~~L~~~l~~~~---~~~~~~~~~i~ 117 (316)
T 2ac3_A 89 VFEKMRGGSILSHIHKRR---HFNELEASVVV 117 (316)
T ss_dssp EEECCTTCBHHHHHHHHS---SCCHHHHHHHH
T ss_pred EEEcCCCCcHHHHHhccC---CCCHHHHHHHH
Confidence 999999999999997542 46666555543
No 254
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=99.35 E-value=1.9e-12 Score=127.13 Aligned_cols=105 Identities=20% Similarity=0.278 Sum_probs=85.6
Q ss_pred ccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.+.|++.+.||+|+||.||+|.. .+++.||+|.+...... ..+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 94 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEE---ELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIM 94 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----C---CHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEE
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHH---HHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEE
Confidence 45699999999999999999994 57999999998754322 357899999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++..... .+++.....|+
T Consensus 95 ~e~~~~~~l~~~~~~~~~--~~~~~~~~~~~ 123 (302)
T 2j7t_A 95 IEFCPGGAVDAIMLELDR--GLTEPQIQVVC 123 (302)
T ss_dssp EECCTTEEHHHHHHHHTS--CCCHHHHHHHH
T ss_pred EEeCCCCcHHHHHHhhcc--CCCHHHHHHHH
Confidence 999999999999875332 46777666553
No 255
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=99.35 E-value=4.5e-13 Score=134.43 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=86.7
Q ss_pred HccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCeeE
Q 044615 460 ATNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALHSF 537 (571)
Q Consensus 460 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~ 537 (571)
..++|+..+.||+|+||.||+|+. .+++.||||++.+.........+.+.+|..++..+ +||||+++++++.+.+..|
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 356899999999999999999995 46889999999753221222356788999999987 8999999999999999999
Q ss_pred EEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 538 VVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
+||||++||+|.+++...+ .+++.....+
T Consensus 98 lv~E~~~gg~L~~~l~~~~---~~~~~~~~~~ 126 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQVG---RFKEPHAVFY 126 (353)
T ss_dssp EEEECCCSCBHHHHHHHHS---SCCHHHHHHH
T ss_pred EEEeCCCCCcHHHHHHhcC---CCCHHHHHHH
Confidence 9999999999999997532 3566655544
No 256
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=99.35 E-value=1.6e-12 Score=132.31 Aligned_cols=107 Identities=23% Similarity=0.358 Sum_probs=88.8
Q ss_pred cCCCccCeeeccCcceEEEEEc--------CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEe
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL--------PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSH 532 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~--------~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~ 532 (571)
++|.+.+.||+|+||.||+|.. ..+..||||++.... .....+++.+|+++++++ +|||||++++++.+
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 146 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA--TEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ 146 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc--CHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence 4688899999999999999983 123579999997543 234467899999999999 99999999999999
Q ss_pred CCeeEEEEeccCCCChhhhhccCCC-------------ccCCCHHHHhhhc
Q 044615 533 ALHSFVVYEYLEMGSLAMNLSNDAA-------------AEQFCWTKRMNAI 570 (571)
Q Consensus 533 ~~~~~lv~e~~~~G~L~~~l~~~~~-------------~~~l~w~~r~~ia 570 (571)
.+..|+||||+++|+|.+++..... ...++|..+.+|+
T Consensus 147 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 197 (382)
T 3tt0_A 147 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCA 197 (382)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHH
T ss_pred CCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHH
Confidence 9999999999999999999986432 2358888887765
No 257
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=1.1e-13 Score=139.53 Aligned_cols=111 Identities=21% Similarity=0.324 Sum_probs=64.1
Q ss_pred CCCCEEEcccCccccccchhh-----ccCCCCCEEEcCCccCccC----cchhhhcccCCCEEEccCCcCCcc----cch
Q 044615 242 IQLEYLDLSANTFHKSIPESL-----SNLVKLHYLNLSNNQFSQK----IPNKIEKLIHLSELDLSHNIFREE----IPS 308 (571)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~ 308 (571)
++|+.|+|++|.++......+ ...++|+.|+|++|.++.. ++..+...++|+.|+|++|.+.+. ++.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 355566666665544333322 2346677777777776542 233345566677777777776543 234
Q ss_pred hccCCCCCCEEEccCCcCccc----cccccccCCCCCEEECcCCcCcc
Q 044615 309 QICSMQSLEKLNLSHNNLSGS----IPRCFEEMHWLSCIDISYNALQG 352 (571)
Q Consensus 309 ~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~ 352 (571)
.+...++|+.|+|++|.|+.. ++..+...+.|+.|||++|.++.
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 455566777777777777643 23334445667777777776654
No 258
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=99.35 E-value=6.6e-13 Score=134.19 Aligned_cols=95 Identities=21% Similarity=0.275 Sum_probs=72.6
Q ss_pred ccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHH-HhhcCCCCcccEEEEEEeCCeeEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNA-LTKIRHRNIVKFYGFCSHALHSFV 538 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~-l~~l~H~niv~l~~~~~~~~~~~l 538 (571)
.++|+..+.||+|+||+||+|+. .+++.||||++.+.........+.+.+|..+ ++.++|||||++++++.+.+..|+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 35799999999999999999994 5789999999976543333334567788877 577999999999999999999999
Q ss_pred EEeccCCCChhhhhccC
Q 044615 539 VYEYLEMGSLAMNLSND 555 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~ 555 (571)
||||+++|+|.+++.+.
T Consensus 117 v~E~~~gg~L~~~l~~~ 133 (373)
T 2r5t_A 117 VLDYINGGELFYHLQRE 133 (373)
T ss_dssp EEECCCSCBHHHHHHHH
T ss_pred EEeCCCCCcHHHHHHhc
Confidence 99999999999999753
No 259
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=99.35 E-value=2.7e-12 Score=125.40 Aligned_cols=105 Identities=23% Similarity=0.318 Sum_probs=85.1
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
++|+..+.||+|+||.||+|. ..+++.||||++...... ....+.+.+|++++++++||||+++++++.+.+..|+||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 80 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD-EGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVF 80 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSS-TTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCc-CCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEE
Confidence 468999999999999999999 457999999999765433 234577889999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||+++ ++.+++..... .+++.....|+
T Consensus 81 e~~~~-~l~~~~~~~~~--~l~~~~~~~~~ 107 (292)
T 3o0g_A 81 EFCDQ-DLKKYFDSCNG--DLDPEIVKSFL 107 (292)
T ss_dssp ECCSE-EHHHHHHHTTT--CCCHHHHHHHH
T ss_pred ecCCC-CHHHHHHhCCC--CCCHHHHHHHH
Confidence 99986 66666654322 46666665543
No 260
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=99.35 E-value=1.5e-12 Score=127.07 Aligned_cols=104 Identities=25% Similarity=0.326 Sum_probs=86.0
Q ss_pred cCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEEe
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYE 541 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 541 (571)
++|+..+.||+|+||.||+|+..+++.||||++...... ....+.+.+|++++++++||||+++++++.+.+..|+|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 80 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKED-EGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFE 80 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGG-GCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccc-cccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEE
Confidence 468899999999999999999878999999999754322 2234678899999999999999999999999999999999
Q ss_pred ccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 542 YLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 542 ~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
|+++ +|.+++..... .+++.....+
T Consensus 81 ~~~~-~l~~~~~~~~~--~~~~~~~~~~ 105 (288)
T 1ob3_A 81 HLDQ-DLKKLLDVCEG--GLESVTAKSF 105 (288)
T ss_dssp CCSE-EHHHHHHTSTT--CCCHHHHHHH
T ss_pred ecCC-CHHHHHHhccc--CCCHHHHHHH
Confidence 9986 99999875432 4666655544
No 261
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=99.34 E-value=1.5e-12 Score=128.44 Aligned_cols=108 Identities=22% Similarity=0.338 Sum_probs=89.3
Q ss_pred ccCCCccCeeeccCcceEEEEEc------CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeC
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHA 533 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~ 533 (571)
.++|+..+.||+|+||.||+|.. .+++.||||.+.... .....+.+.+|+++++++ +||||+++++++.+.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~ 99 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA--HLTEREALMSELKVLSYLGNHMNIVNLLGACTIG 99 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch--hHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecC
Confidence 35688999999999999999973 356789999997543 234467899999999999 999999999999999
Q ss_pred CeeEEEEeccCCCChhhhhccCCC---------------ccCCCHHHHhhhc
Q 044615 534 LHSFVVYEYLEMGSLAMNLSNDAA---------------AEQFCWTKRMNAI 570 (571)
Q Consensus 534 ~~~~lv~e~~~~G~L~~~l~~~~~---------------~~~l~w~~r~~ia 570 (571)
+..++||||+++|+|.+++..... ...++|.....++
T Consensus 100 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (313)
T 1t46_A 100 GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFS 151 (313)
T ss_dssp SSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHH
T ss_pred CCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHH
Confidence 999999999999999999985432 1247887777664
No 262
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=99.34 E-value=1.5e-12 Score=125.58 Aligned_cols=104 Identities=24% Similarity=0.321 Sum_probs=81.1
Q ss_pred cCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCc-hHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDE-MACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
++|+..+.||+|+||.||+|.. .++.||||++....... ....+.+.+|+++++.++||||+++++++.+.+..|+||
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred hheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence 5688999999999999999996 48899999987543322 233567999999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||+++|+|.+++... .+++.....|+
T Consensus 86 e~~~~~~L~~~~~~~----~~~~~~~~~i~ 111 (271)
T 3dtc_A 86 EFARGGPLNRVLSGK----RIPPDILVNWA 111 (271)
T ss_dssp ECCTTEEHHHHHTSS----CCCHHHHHHHH
T ss_pred EcCCCCCHHHHhhcC----CCCHHHHHHHH
Confidence 999999999999643 46666665543
No 263
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=99.34 E-value=1.7e-12 Score=134.86 Aligned_cols=103 Identities=25% Similarity=0.346 Sum_probs=85.7
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCC-eeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHAL-HSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~-~~~lv 539 (571)
.++|+..+.||+|+||.||+|... ++.||||.++... ..+.|.+|+++|++++|||||++++++.+.. ..|+|
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv 265 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV 265 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT-----TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEE
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch-----HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEE
Confidence 456888999999999999999874 7799999997543 2467999999999999999999999987765 78999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||||++|+|.++++..+. ..+++..++.|+
T Consensus 266 ~e~~~~g~L~~~l~~~~~-~~~~~~~~~~~~ 295 (450)
T 1k9a_A 266 TEYMAKGSLVDYLRSRGR-SVLGGDCLLKFS 295 (450)
T ss_dssp EECCTTCBHHHHHHHHCT-TTCCHHHHHHHH
T ss_pred EEecCCCcHHHHHHhcCC-CCCCHHHHHHHH
Confidence 999999999999986432 246777666554
No 264
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=99.34 E-value=2.3e-12 Score=124.63 Aligned_cols=105 Identities=24% Similarity=0.301 Sum_probs=87.7
Q ss_pred ccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|++.+.||+|+||.||+|.. .+++.||||++...... ...+.+.+|+.+++.++||||+++++++.+.+..|+|
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 83 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV--DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF 83 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCT--THHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccch--hhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEE
Confidence 35689999999999999999994 57999999998644322 2357789999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++... ..+++.....++
T Consensus 84 ~e~~~~~~L~~~l~~~---~~~~~~~~~~~~ 111 (276)
T 2yex_A 84 LEYCSGGELFDRIEPD---IGMPEPDAQRFF 111 (276)
T ss_dssp EECCTTEEGGGGSBTT---TBCCHHHHHHHH
T ss_pred EEecCCCcHHHHHhhc---cCCCHHHHHHHH
Confidence 9999999999999743 246666665543
No 265
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.34 E-value=3.7e-13 Score=139.94 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=79.8
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|+..+.||+|+||.||+|. ..+|+.||||++.+...........+.+|++++++++||||+++++++.+.+..|+|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 4579999999999999999999 568999999999753222223346688999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||||++|+|.+++.... .+++.....|+
T Consensus 227 ~e~~~~~~L~~~l~~~~---~~~~~~~~~~~ 254 (446)
T 4ejn_A 227 MEYANGGELFFHLSRER---VFSEDRARFYG 254 (446)
T ss_dssp ECCCSSCBHHHHHHHHS---CCCHHHHHHHH
T ss_pred EeeCCCCcHHHHHHhcC---CCCHHHHHHHH
Confidence 99999999999997542 46666665543
No 266
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=99.34 E-value=1.7e-12 Score=136.82 Aligned_cols=104 Identities=20% Similarity=0.285 Sum_probs=82.0
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
+.|++.+.||+|+||.||+|+ ..++..||||++.+..... .....+.+|+.++++++|||||+++++|.+....|+||
T Consensus 37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 115 (494)
T 3lij_A 37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVST-SSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM 115 (494)
T ss_dssp HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC------CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCc-hHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 359999999999999999999 4589999999997654222 22467899999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
|||++|+|.+++.... .+++.....|
T Consensus 116 e~~~~g~L~~~~~~~~---~~~~~~~~~i 141 (494)
T 3lij_A 116 ECYKGGELFDEIIHRM---KFNEVDAAVI 141 (494)
T ss_dssp ECCCSCBHHHHHHHHS---SCCHHHHHHH
T ss_pred ecCCCCcHHHHHHHcC---CCCHHHHHHH
Confidence 9999999999887542 3666655544
No 267
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=128.47 Aligned_cols=100 Identities=30% Similarity=0.445 Sum_probs=83.3
Q ss_pred cCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEEe
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYE 541 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 541 (571)
++|++.+.||+|+||.||+|+. .++.||||.+... ...+.|.+|++++++++||||+++++++. +..|+|||
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e 79 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE-----SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVME 79 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSST-----THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEE
T ss_pred hHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecCh-----hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEE
Confidence 4688899999999999999987 4788999998642 23577999999999999999999999886 44789999
Q ss_pred ccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 542 YLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 542 ~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
|+++|+|.+++........+++...+++
T Consensus 80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~ 107 (307)
T 2eva_A 80 YAEGGSLYNVLHGAEPLPYYTAAHAMSW 107 (307)
T ss_dssp CCTTCBHHHHHHCSSSEECCCHHHHHHH
T ss_pred cCCCCCHHHHHhccCCCCccCHHHHHHH
Confidence 9999999999986654445677666654
No 268
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=99.34 E-value=2.4e-12 Score=126.42 Aligned_cols=105 Identities=24% Similarity=0.364 Sum_probs=83.5
Q ss_pred cCCCccCeeeccCcceEEEEEc-----CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC--C
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-----PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA--L 534 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~ 534 (571)
..|+..+.||+|+||.||+|++ .+++.||||++...... ...+.+.+|++++++++||||+++++++.+. .
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 98 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGG--NHIADLKKEIEILRNLYHENIVKYKGICTEDGGN 98 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---C
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccc--hhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCc
Confidence 3488899999999999999982 46889999999754322 2357799999999999999999999999876 6
Q ss_pred eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 535 HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
..++||||+++|+|.+++..... .+++..+..|+
T Consensus 99 ~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~ 132 (302)
T 4e5w_A 99 GIKLIMEFLPSGSLKEYLPKNKN--KINLKQQLKYA 132 (302)
T ss_dssp CEEEEEECCTTCBHHHHHHHHTT--TCCHHHHHHHH
T ss_pred eEEEEEEeCCCCcHHHHHHhccc--cCCHHHHHHHH
Confidence 68999999999999999965432 46777766654
No 269
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=99.34 E-value=1.5e-12 Score=130.34 Aligned_cols=95 Identities=24% Similarity=0.438 Sum_probs=79.1
Q ss_pred HccCCCccCeeeccCcceEEEEEc------CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEe
Q 044615 460 ATNNFDDGHCIGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSH 532 (571)
Q Consensus 460 ~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~ 532 (571)
..++|+..+.||+|+||.||+|.. .++..||||.+..... ....+.+.+|+.++.++ +||||+++++++..
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 120 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD--SSEREALMSELKMMTQLGSHENIVNLLGACTL 120 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccC--HHHHHHHHHHHHHHHhhcCCCCeeeEEEEEee
Confidence 346789999999999999999984 2456899999975422 23346799999999999 99999999999999
Q ss_pred CCeeEEEEeccCCCChhhhhccCC
Q 044615 533 ALHSFVVYEYLEMGSLAMNLSNDA 556 (571)
Q Consensus 533 ~~~~~lv~e~~~~G~L~~~l~~~~ 556 (571)
.+..|+||||+++|+|.+++....
T Consensus 121 ~~~~~lv~e~~~~g~L~~~l~~~~ 144 (344)
T 1rjb_A 121 SGPIYLIFEYCCYGDLLNYLRSKR 144 (344)
T ss_dssp SSSCEEEEECCTTCBHHHHHHTTT
T ss_pred CCccEEEEecCCCCcHHHHHhhcc
Confidence 999999999999999999998643
No 270
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=99.34 E-value=4.7e-12 Score=125.34 Aligned_cols=101 Identities=25% Similarity=0.363 Sum_probs=83.8
Q ss_pred CCccCeeeccCcceEEEEEc-----CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC--Cee
Q 044615 464 FDDGHCIGNGGQGSVYKAKL-----PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA--LHS 536 (571)
Q Consensus 464 ~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~ 536 (571)
|+..+.||+|+||.||++.+ .+++.||||++.... .....+.+.+|++++++++||||+++++++.+. ...
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 110 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA--GPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASL 110 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc--ChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceE
Confidence 48899999999999998863 267889999997542 234467799999999999999999999999884 678
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
++||||+++|+|.+++... .++|..+..|+
T Consensus 111 ~lv~e~~~~~~L~~~l~~~----~~~~~~~~~i~ 140 (318)
T 3lxp_A 111 QLVMEYVPLGSLRDYLPRH----SIGLAQLLLFA 140 (318)
T ss_dssp EEEECCCTTCBHHHHGGGS----CCCHHHHHHHH
T ss_pred EEEEecccCCcHHHHHhhC----CCCHHHHHHHH
Confidence 9999999999999999754 26777666654
No 271
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.34 E-value=1.3e-12 Score=131.03 Aligned_cols=97 Identities=22% Similarity=0.245 Sum_probs=82.2
Q ss_pred HHHHccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCC--CchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC
Q 044615 457 IIRATNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLP--DEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA 533 (571)
Q Consensus 457 ~~~~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~--~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~ 533 (571)
+....++|++.+.||+|+||.||+|. ..+++.||+|++.+... ......+.+.+|++++++++|||||++++++.+.
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~ 100 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE 100 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence 34455679999999999999999999 56889999999864321 1123457899999999999999999999999999
Q ss_pred CeeEEEEeccCCCChhhhhc
Q 044615 534 LHSFVVYEYLEMGSLAMNLS 553 (571)
Q Consensus 534 ~~~~lv~e~~~~G~L~~~l~ 553 (571)
+..++||||+++|+|.+++.
T Consensus 101 ~~~~lv~e~~~gg~L~~~l~ 120 (345)
T 3hko_A 101 QYICLVMELCHGGHLLDKLN 120 (345)
T ss_dssp SEEEEEEECCCSCBHHHHEE
T ss_pred CeEEEEEeCCCCCcHHHHHH
Confidence 99999999999999999996
No 272
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=99.34 E-value=7.1e-13 Score=128.95 Aligned_cols=107 Identities=21% Similarity=0.410 Sum_probs=87.0
Q ss_pred ccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|++.+.||+|+||.||+|.. .+++.||+|++...........+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 92 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM 92 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence 35699999999999999999994 57889999998643211112246789999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++...+ .+++.....++
T Consensus 93 ~e~~~~~~L~~~l~~~~---~~~~~~~~~~~ 120 (284)
T 2vgo_A 93 LEFAPRGELYKELQKHG---RFDEQRSATFM 120 (284)
T ss_dssp ECCCTTEEHHHHHHHHS---SCCHHHHHHHH
T ss_pred EEeCCCCcHHHHHHhcC---CCCHHHHHHHH
Confidence 99999999999997542 36666655543
No 273
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=99.34 E-value=2.2e-12 Score=126.83 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=83.6
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
+.|.+.+.||+|+||.||+|+ ..+|+.||+|++...... ..+.+.+|+.++++++||||+++++++.+.+..|+||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (304)
T 2jam_A 9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAF---RDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVM 85 (304)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC---------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEeccccc---chHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEE
Confidence 468899999999999999999 458999999999754322 2456889999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
||+++|+|.+++...+ .+++.....+
T Consensus 86 e~~~~~~L~~~l~~~~---~~~~~~~~~~ 111 (304)
T 2jam_A 86 QLVSGGELFDRILERG---VYTEKDASLV 111 (304)
T ss_dssp CCCCSCBHHHHHHHHS---CCCHHHHHHH
T ss_pred EcCCCccHHHHHHHcC---CCCHHHHHHH
Confidence 9999999999997542 3566555544
No 274
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=99.33 E-value=2.4e-12 Score=128.05 Aligned_cols=108 Identities=23% Similarity=0.361 Sum_probs=86.5
Q ss_pred ccCCCccCeeeccCcceEEEEEc------CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCC
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHAL 534 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 534 (571)
.++|++.+.||+|+||.||+|+. .+++.||||.+.... ......++.+|+.++++++||||+++++++.+..
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 106 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC--SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL 106 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEecccc--chhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCC
Confidence 35699999999999999999983 357789999996432 2344567999999999999999999999999999
Q ss_pred eeEEEEeccCCCChhhhhccCCC----ccCCCHHHHhhhc
Q 044615 535 HSFVVYEYLEMGSLAMNLSNDAA----AEQFCWTKRMNAI 570 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~~~----~~~l~w~~r~~ia 570 (571)
..|+||||+++|+|.+++..... ...++|..++.|+
T Consensus 107 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~ 146 (327)
T 2yfx_A 107 PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 146 (327)
T ss_dssp SCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHH
T ss_pred CcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHH
Confidence 99999999999999999986432 1357887776654
No 275
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=99.33 E-value=2.4e-12 Score=127.37 Aligned_cols=106 Identities=19% Similarity=0.340 Sum_probs=72.6
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|+..+.||+|+||.||+|. ..+|+.||+|++...... ...+.+.+|++++++++|||||++++++.+.+..|+|
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 81 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEE--GTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLV 81 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTT--CSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccccc--ccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEE
Confidence 4579999999999999999999 457999999999754322 2235788999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCC---CccCCCHHHHhhh
Q 044615 540 YEYLEMGSLAMNLSNDA---AAEQFCWTKRMNA 569 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~---~~~~l~w~~r~~i 569 (571)
|||++ |+|.+++.... ....+++.....+
T Consensus 82 ~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~ 113 (317)
T 2pmi_A 82 FEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYF 113 (317)
T ss_dssp EECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHH
T ss_pred EEecC-CCHHHHHHhccccccccCCCHHHHHHH
Confidence 99998 69999987432 1234666665544
No 276
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=99.33 E-value=5e-12 Score=124.18 Aligned_cols=103 Identities=21% Similarity=0.291 Sum_probs=88.0
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
+.|+..+.||+|+||.||+|. ..+++.||||++...... ...+.+.+|+.++++++||||+++++++.+....|+||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 99 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAE--DEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIM 99 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCS--TTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccH--HHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEE
Confidence 458899999999999999998 568999999999765432 23577999999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||+++|+|.+++... .+++.....++
T Consensus 100 e~~~~~~L~~~~~~~----~~~~~~~~~~~ 125 (303)
T 3a7i_A 100 EYLGGGSALDLLEPG----PLDETQIATIL 125 (303)
T ss_dssp ECCTTEEHHHHHTTS----CCCHHHHHHHH
T ss_pred EeCCCCcHHHHHhcC----CCCHHHHHHHH
Confidence 999999999999742 46777766654
No 277
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=99.33 E-value=1.1e-12 Score=139.49 Aligned_cols=104 Identities=21% Similarity=0.357 Sum_probs=86.6
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
.++|++.+.||+|+||.||+|....+..||||++...... .++|.+|+++|++++|||||++++++.+ +..|+||
T Consensus 266 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~ 340 (535)
T 2h8h_A 266 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS----PEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVT 340 (535)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSC----HHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEE
T ss_pred hhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCC----HHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEee
Confidence 3568889999999999999999877788999999764322 4679999999999999999999999865 6789999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||++|+|.++++... ...++|.+.+.|+
T Consensus 341 e~~~~gsL~~~l~~~~-~~~l~~~~~~~i~ 369 (535)
T 2h8h_A 341 EYMSKGSLLDFLKGET-GKYLRLPQLVDMA 369 (535)
T ss_dssp CCCTTEEHHHHHSHHH-HTTCCHHHHHHHH
T ss_pred ehhcCCcHHHHHhhcC-CCCCCHHHHHHHH
Confidence 9999999999997432 2347777777664
No 278
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.33 E-value=1.6e-12 Score=133.76 Aligned_cols=107 Identities=20% Similarity=0.207 Sum_probs=84.2
Q ss_pred HccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCC-----chHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC
Q 044615 460 ATNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPD-----EMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA 533 (571)
Q Consensus 460 ~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~-----~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~ 533 (571)
..++|.+.+.||+|+||.||+|. ..+++.||||++.+.... .......+.+|++++++++|||||++++++. .
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-~ 211 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-A 211 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-S
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-c
Confidence 34679999999999999999998 567899999998753211 1112235889999999999999999999985 5
Q ss_pred CeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 534 LHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 534 ~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+..|+||||+++|+|.+++.... .+++.....|+
T Consensus 212 ~~~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~~i~ 245 (419)
T 3i6u_A 212 EDYYIVLELMEGGELFDKVVGNK---RLKEATCKLYF 245 (419)
T ss_dssp SEEEEEEECCTTCBGGGGTSSSC---CCCHHHHHHHH
T ss_pred CceEEEEEcCCCCcHHHHHhccC---CCCHHHHHHHH
Confidence 56899999999999999997543 46777666553
No 279
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=99.32 E-value=2.8e-12 Score=125.58 Aligned_cols=107 Identities=20% Similarity=0.279 Sum_probs=88.1
Q ss_pred ccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCc------hHhHHHHHHHHHHHhhcC-CCCcccEEEEEEe
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDE------MACQQEFLNEVNALTKIR-HRNIVKFYGFCSH 532 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~------~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~ 532 (571)
.++|+..+.||+|+||.||+|.. .+++.||||++....... ....+.+.+|+++++++. ||||+++++++.+
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET 95 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence 46799999999999999999994 578999999997653211 123567889999999995 9999999999999
Q ss_pred CCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 533 ALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 533 ~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
....|+||||+++|+|.+++... ..+++.....++
T Consensus 96 ~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~ 130 (298)
T 1phk_A 96 NTFFFLVFDLMKKGELFDYLTEK---VTLSEKETRKIM 130 (298)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHH
T ss_pred CCeEEEEEeccCCCcHHHHHhcc---CCCCHHHHHHHH
Confidence 99999999999999999999753 246666665553
No 280
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=99.32 E-value=1.9e-12 Score=125.52 Aligned_cols=103 Identities=21% Similarity=0.356 Sum_probs=85.6
Q ss_pred cCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEEe
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYE 541 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 541 (571)
++|+..+.||+|+||.||+|...++..||||.+...... .+.+.+|++++++++||||+++++++. .+..++|||
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e 87 (279)
T 1qpc_A 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS----PDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITE 87 (279)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSC----HHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCccc----HHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEe
Confidence 468899999999999999999877889999999754322 467999999999999999999999986 456899999
Q ss_pred ccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 542 YLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 542 ~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|+++|+|.+++.... ...+++..+++|+
T Consensus 88 ~~~~~~L~~~l~~~~-~~~~~~~~~~~i~ 115 (279)
T 1qpc_A 88 YMENGSLVDFLKTPS-GIKLTINKLLDMA 115 (279)
T ss_dssp CCTTCBHHHHTTSHH-HHTCCHHHHHHHH
T ss_pred cCCCCCHHHHHhcCC-CCCCCHHHHHHHH
Confidence 999999999997532 1257777776654
No 281
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=99.32 E-value=2.9e-12 Score=128.07 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=82.5
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCeeEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALHSFV 538 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~l 538 (571)
.++|++.+.||+|+||.||+|. ..+++.||||++.+.... +.+|++++.++ +|||||++++++.+.+..|+
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-------~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~l 93 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD-------PTEEIEILLRYGQHPNIITLKDVYDDGKYVYV 93 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC-------CHHHHHHHHHHTTSTTBCCEEEEEECSSEEEE
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC-------hHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEE
Confidence 4569999999999999999999 457899999999765422 34688888887 79999999999999999999
Q ss_pred EEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 539 VYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
||||+++|+|.+++...+ .+++.....|
T Consensus 94 v~E~~~gg~L~~~i~~~~---~~~~~~~~~~ 121 (342)
T 2qr7_A 94 VTELMKGGELLDKILRQK---FFSEREASAV 121 (342)
T ss_dssp EECCCCSCBHHHHHHTCT---TCCHHHHHHH
T ss_pred EEeCCCCCcHHHHHHHcC---CCCHHHHHHH
Confidence 999999999999997543 3666655544
No 282
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=99.32 E-value=3e-12 Score=127.44 Aligned_cols=107 Identities=21% Similarity=0.354 Sum_probs=84.5
Q ss_pred HHccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeE
Q 044615 459 RATNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSF 537 (571)
Q Consensus 459 ~~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 537 (571)
...++|++.+.||+|+||.||+|. ..+++.||||++...... ....+.+.+|++++++++||||+++++++.+.+..|
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEE-EGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH 109 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC---------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccc-cccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence 345679999999999999999998 568999999999755322 233466889999999999999999999999999999
Q ss_pred EEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 538 VVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+||||+++ +|.+++.... .+++.....|+
T Consensus 110 lv~e~~~~-~L~~~~~~~~---~~~~~~~~~i~ 138 (329)
T 3gbz_A 110 LIFEYAEN-DLKKYMDKNP---DVSMRVIKSFL 138 (329)
T ss_dssp EEEECCSE-EHHHHHHHCT---TCCHHHHHHHH
T ss_pred EEEecCCC-CHHHHHhhcC---CCCHHHHHHHH
Confidence 99999984 9999997543 36666655543
No 283
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=99.32 E-value=1.3e-12 Score=137.50 Aligned_cols=105 Identities=23% Similarity=0.285 Sum_probs=86.6
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
+.|++.+.||+|+||.||+|. ..+++.||||++.+.... ....+.+.+|++++++++|||||++++++.+....|+||
T Consensus 22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 100 (486)
T 3mwu_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAK-NKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG 100 (486)
T ss_dssp HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHB-CSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEeccccc-chHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence 459999999999999999999 458999999998643211 122567899999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||++|+|.+++.... .+++.....|+
T Consensus 101 e~~~~~~L~~~~~~~~---~~~~~~~~~i~ 127 (486)
T 3mwu_A 101 ELYTGGELFDEIIKRK---RFSEHDAARII 127 (486)
T ss_dssp CCCCSCBHHHHHHHHS---SCCHHHHHHHH
T ss_pred EcCCCCcHHHHHHhcC---CCCHHHHHHHH
Confidence 9999999999987542 46666655543
No 284
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=99.32 E-value=4.3e-12 Score=125.97 Aligned_cols=95 Identities=24% Similarity=0.310 Sum_probs=80.9
Q ss_pred cCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcC-CCCcccEEEEEEeCCeeEEEEeccC
Q 044615 467 GHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR-HRNIVKFYGFCSHALHSFVVYEYLE 544 (571)
Q Consensus 467 ~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~~lv~e~~~ 544 (571)
.+.||+|+||.||+|. ..+++.||||++... ....+.+|+.+++.+. |||||++++++.+....|+||||++
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~ 89 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR------MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLN 89 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG------GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCC
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh------hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccC
Confidence 4789999999999999 457999999998642 2456789999999997 9999999999999999999999999
Q ss_pred CCChhhhhccCCCccCCCHHHHhhhc
Q 044615 545 MGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 545 ~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+|+|.+++.... .+++.....|+
T Consensus 90 ~~~L~~~l~~~~---~~~~~~~~~i~ 112 (325)
T 3kn6_A 90 GGELFERIKKKK---HFSETEASYIM 112 (325)
T ss_dssp SCBHHHHHHHCS---CCCHHHHHHHH
T ss_pred CCcHHHHHHhcC---CCCHHHHHHHH
Confidence 999999998542 46777666553
No 285
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=99.31 E-value=4.1e-12 Score=126.55 Aligned_cols=106 Identities=21% Similarity=0.369 Sum_probs=87.9
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|+..+.||+|+||.||+|. ..+|+.||||++..... .....+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 102 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDD-DKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLV 102 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSS-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCC-chHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEE
Confidence 3568999999999999999999 45799999999875433 234456788999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++.... .+++.....|+
T Consensus 103 ~e~~~~~~l~~~~~~~~---~~~~~~~~~~~ 130 (331)
T 4aaa_A 103 FEFVDHTILDDLELFPN---GLDYQVVQKYL 130 (331)
T ss_dssp EECCSEEHHHHHHHSTT---CCCHHHHHHHH
T ss_pred EecCCcchHHHHHhhcc---CCCHHHHHHHH
Confidence 99999999988876432 36777666553
No 286
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=99.31 E-value=1.8e-12 Score=128.59 Aligned_cols=110 Identities=21% Similarity=0.317 Sum_probs=89.4
Q ss_pred HHccCCCccCeeeccCcceEEEEEcC------CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEe
Q 044615 459 RATNNFDDGHCIGNGGQGSVYKAKLP------TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSH 532 (571)
Q Consensus 459 ~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 532 (571)
...++|++.+.||+|+||.||+|... +++.||||.+.... .......+.+|++++++++||||+++++++.+
T Consensus 22 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~ 99 (322)
T 1p4o_A 22 VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA--SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ 99 (322)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS--CHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS
T ss_pred chhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc--CHHHHHHHHHHHHHHHhcCCCCEeeeEEEEcc
Confidence 34567999999999999999999743 46789999997542 23445679999999999999999999999999
Q ss_pred CCeeEEEEeccCCCChhhhhccCCC-------ccCCCHHHHhhhc
Q 044615 533 ALHSFVVYEYLEMGSLAMNLSNDAA-------AEQFCWTKRMNAI 570 (571)
Q Consensus 533 ~~~~~lv~e~~~~G~L~~~l~~~~~-------~~~l~w~~r~~ia 570 (571)
.+..|+||||+++|+|.+++..... ...++|...++|+
T Consensus 100 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 144 (322)
T 1p4o_A 100 GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMA 144 (322)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHH
T ss_pred CCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHH
Confidence 9999999999999999999975321 1346777776654
No 287
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.31 E-value=4e-12 Score=126.74 Aligned_cols=105 Identities=24% Similarity=0.392 Sum_probs=85.8
Q ss_pred cCCCccCeeeccCcceEEEEEcC-C----CCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCee
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLP-T----GEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS 536 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~-~----~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 536 (571)
..|...+.||+|+||.||+|... + +..||||.+.... .......+.+|++++++++||||+++++++.+.+..
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 121 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY--TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPM 121 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCc
Confidence 45777899999999999999843 2 2359999997543 234456799999999999999999999999999999
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
++||||+++|+|.+++..... .++|..++.|+
T Consensus 122 ~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~ 153 (333)
T 1mqb_A 122 MIITEYMENGALDKFLREKDG--EFSVLQLVGML 153 (333)
T ss_dssp EEEEECCTTEEHHHHHHHTTT--CSCHHHHHHHH
T ss_pred EEEEeCCCCCcHHHHHHhCCC--CCCHHHHHHHH
Confidence 999999999999999975432 57777776654
No 288
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=99.31 E-value=2.5e-12 Score=127.64 Aligned_cols=109 Identities=21% Similarity=0.332 Sum_probs=79.6
Q ss_pred ccCCCccCeeeccCcceEEEEEcC-CCC---EEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCee
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLP-TGE---IVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS 536 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~---~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 536 (571)
.++|++.+.||+|+||.||+|... ++. .||||++....... ...+.+.+|++++++++||||+++++++......
T Consensus 22 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 100 (323)
T 3qup_A 22 EQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIAS-SDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK 100 (323)
T ss_dssp ---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------C-HHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred hhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCH-HHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence 457999999999999999999854 333 79999997653332 3467899999999999999999999999877655
Q ss_pred ------EEEEeccCCCChhhhhccCC---CccCCCHHHHhhhc
Q 044615 537 ------FVVYEYLEMGSLAMNLSNDA---AAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ------~lv~e~~~~G~L~~~l~~~~---~~~~l~w~~r~~ia 570 (571)
++||||+++|+|.+++.... ....+++..+.+|+
T Consensus 101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~ 143 (323)
T 3qup_A 101 GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFM 143 (323)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHH
T ss_pred cCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHH
Confidence 99999999999999997432 12257887777664
No 289
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=99.31 E-value=2.9e-12 Score=127.38 Aligned_cols=104 Identities=25% Similarity=0.295 Sum_probs=86.4
Q ss_pred cCCCccCeeeccCcceEEEEEc-----CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEe--CC
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-----PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSH--AL 534 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~--~~ 534 (571)
++|+..+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++||||+++++++.. ..
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 99 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG---PDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQ 99 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCC---HHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSC
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCC---HHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCc
Confidence 4689999999999999999983 368899999997542 3445779999999999999999999999874 56
Q ss_pred eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 535 HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
..|+||||+++|+|.+++..... .++|..+..|+
T Consensus 100 ~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~ 133 (327)
T 3lxl_A 100 SLRLVMEYLPSGCLRDFLQRHRA--RLDASRLLLYS 133 (327)
T ss_dssp EEEEEEECCTTCBHHHHHHHHGG--GCCHHHHHHHH
T ss_pred eEEEEEeecCCCCHHHHHHhccc--CCCHHHHHHHH
Confidence 68999999999999999975332 47777777654
No 290
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=99.31 E-value=8.6e-13 Score=132.42 Aligned_cols=108 Identities=17% Similarity=0.254 Sum_probs=88.7
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCch--------------HhHHHHHHHHHHHhhcCCCCcccE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEM--------------ACQQEFLNEVNALTKIRHRNIVKF 526 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~--------------~~~~~~~~Ei~~l~~l~H~niv~l 526 (571)
.++|++.+.||+|+||.||+|.. +++.||||.+........ ...+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 45799999999999999999998 899999999864321110 112789999999999999999999
Q ss_pred EEEEEeCCeeEEEEeccCCCChhhh------hccCCCccCCCHHHHhhhc
Q 044615 527 YGFCSHALHSFVVYEYLEMGSLAMN------LSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 527 ~~~~~~~~~~~lv~e~~~~G~L~~~------l~~~~~~~~l~w~~r~~ia 570 (571)
++++.+.+..|+||||+++|+|.++ +... ....++|..+..|+
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~-~~~~~~~~~~~~i~ 157 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKN-YTCFIPIQVIKCII 157 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSS-SCCCCCHHHHHHHH
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhc-cccCCCHHHHHHHH
Confidence 9999999999999999999999999 5432 13467888777664
No 291
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.31 E-value=6.9e-12 Score=122.16 Aligned_cols=104 Identities=22% Similarity=0.272 Sum_probs=83.7
Q ss_pred cCCCccC-eeeccCcceEEEEEc---CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeE
Q 044615 462 NNFDDGH-CIGNGGQGSVYKAKL---PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSF 537 (571)
Q Consensus 462 ~~~~~~~-~lg~G~~g~V~~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 537 (571)
++|.+.. .||+|+||.||+|.. .++..||||++.... .....+.+.+|++++++++||||+++++++ ..+..+
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~ 85 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALM 85 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCcc--chhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcE
Confidence 3455555 899999999999974 267789999997642 234567899999999999999999999999 556689
Q ss_pred EEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 538 VVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+||||+++|+|.+++.... ..+++..+..++
T Consensus 86 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~ 116 (287)
T 1u59_A 86 LVMEMAGGGPLHKFLVGKR--EEIPVSNVAELL 116 (287)
T ss_dssp EEEECCTTEEHHHHHTTCT--TTSCHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhCC--ccCCHHHHHHHH
Confidence 9999999999999997543 247777776654
No 292
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=99.31 E-value=6e-12 Score=124.13 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=85.1
Q ss_pred cCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCeeEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv 539 (571)
++|+..+.||+|+||+||+|.. .+++.||||++....... ....++..|+..+.++ +|||||+++++|.+.+..|+|
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv 135 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGP-KDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQ 135 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSH-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccCh-HHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEE
Confidence 4599999999999999999995 489999999987554333 3345566677666555 999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+ +|+|.+++...+ ..++|..+..|+
T Consensus 136 ~e~~-~~~L~~~~~~~~--~~l~~~~~~~i~ 163 (311)
T 3p1a_A 136 TELC-GPSLQQHCEAWG--ASLPEAQVWGYL 163 (311)
T ss_dssp EECC-CCBHHHHHHHHC--SCCCHHHHHHHH
T ss_pred Eecc-CCCHHHHHHhcC--CCCCHHHHHHHH
Confidence 9999 679999987543 358898887765
No 293
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=99.31 E-value=4.1e-12 Score=126.26 Aligned_cols=105 Identities=30% Similarity=0.425 Sum_probs=85.7
Q ss_pred ccCCCccCeeeccCcceEEEEEc-----CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCC-
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-----PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHAL- 534 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~- 534 (571)
.++|++.+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++||||+++++++...+
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 116 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST---EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR 116 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCC---SHHHHHHHHHHHHHHTCCCTTBCCEEEEECC---
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCC---HHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCC
Confidence 34688999999999999999983 368899999997542 234578999999999999999999999987644
Q ss_pred -eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 535 -HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 535 -~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
..++||||+++|+|.+++..... .++|.+.+.|+
T Consensus 117 ~~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~ 151 (326)
T 2w1i_A 117 RNLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYT 151 (326)
T ss_dssp -CCEEEECCCTTCBHHHHHHHSTT--SSCHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHhccc--CCCHHHHHHHH
Confidence 68999999999999999986432 47777776654
No 294
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=99.31 E-value=1.9e-12 Score=127.16 Aligned_cols=108 Identities=20% Similarity=0.281 Sum_probs=74.0
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|++.+.||+|+||.||+|. ..+++.||||++...... ...+++.+|+.++++++||||+++++++...+..|+|
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (303)
T 2vwi_A 14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQ--TSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLV 91 (303)
T ss_dssp CCCCEEEEECC---CCCEEEEEC----CEEEEECCC------------------CCCCCCCTTBCCEEEEEESSSCEEEE
T ss_pred hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcc--hhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEE
Confidence 4679999999999999999999 457899999998654322 2356788999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccC-----CCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSND-----AAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~-----~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++... .....+++..+..|+
T Consensus 92 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~ 127 (303)
T 2vwi_A 92 MKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATIL 127 (303)
T ss_dssp EECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHH
T ss_pred ehhccCCchHHHHHHHhhccccccCCCCHHHHHHHH
Confidence 9999999999999741 122357887777664
No 295
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=99.30 E-value=4.9e-12 Score=123.41 Aligned_cols=103 Identities=22% Similarity=0.190 Sum_probs=84.0
Q ss_pred CCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEe----CCeeE
Q 044615 463 NFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSH----ALHSF 537 (571)
Q Consensus 463 ~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~----~~~~~ 537 (571)
.|...+.||+|+||.||+|. ..++..||+|.+...... ....+.+.+|+.++++++||||+++++++.. ....|
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT-KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhC-HHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 36778899999999999998 557889999998754332 3446789999999999999999999999876 35689
Q ss_pred EEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 538 VVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
+||||+++|+|.+++.... .+++.....|
T Consensus 106 lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~ 134 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKRFK---VMKIKVLRSW 134 (290)
T ss_dssp EEEECCCSCBHHHHHHHHS---SCCHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHcc---CCCHHHHHHH
Confidence 9999999999999997532 4666665554
No 296
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=99.30 E-value=5.7e-12 Score=122.35 Aligned_cols=105 Identities=20% Similarity=0.298 Sum_probs=84.8
Q ss_pred ccCCCccCeeeccCcceEEEEEcC----CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCee
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLP----TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS 536 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 536 (571)
.++|++.+.||+|+||.||+|... .+..||+|.+.... .....+.+.+|+.++++++||||+++++++ ..+..
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~~~ 90 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT--SDSVREKFLQEALTMRQFDHPHIVKLIGVI-TENPV 90 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT--SHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-CSSSC
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccC--CHHHHHHHHHHHHHHHhCCCCccceEEEEE-ccCcc
Confidence 356889999999999999999843 24569999987542 234467899999999999999999999998 45678
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|+||||+++|+|.+++.... ..++|.....++
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~ 122 (281)
T 1mp8_A 91 WIIMELCTLGELRSFLQVRK--YSLDLASLILYA 122 (281)
T ss_dssp EEEEECCTTEEHHHHHHHTT--TTSCHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHhcC--CCCCHHHHHHHH
Confidence 99999999999999997543 247777776654
No 297
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=99.30 E-value=3e-12 Score=124.74 Aligned_cols=106 Identities=23% Similarity=0.279 Sum_probs=88.4
Q ss_pred ccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.+.|++.+.||+|+||.||+|.. .+++.||||++...... ....+.+.+|++++++++||||+++++++.+....|+|
T Consensus 21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 99 (287)
T 2wei_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAK-NKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (287)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBS-SSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccc-hHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEE
Confidence 35699999999999999999994 58999999998654322 12357799999999999999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++.... .+++.....|+
T Consensus 100 ~e~~~~~~L~~~l~~~~---~~~~~~~~~i~ 127 (287)
T 2wei_A 100 GELYTGGELFDEIIKRK---RFSEHDAARII 127 (287)
T ss_dssp ECCCCSCBHHHHHHHHS---SCCHHHHHHHH
T ss_pred EEccCCCCHHHHHHhcC---CCCHHHHHHHH
Confidence 99999999999987432 46777666554
No 298
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=99.30 E-value=4.8e-12 Score=124.06 Aligned_cols=103 Identities=21% Similarity=0.320 Sum_probs=84.1
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEe-------
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSH------- 532 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~------- 532 (571)
.++|+..+.||+|+||.||+|+ ..+++.||||++.. .....+.+.+|++++++++||||+++++++.+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~----~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 80 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRH----TEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKP 80 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEE----EHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEec----cHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhh
Confidence 3568999999999999999999 45899999999853 23445779999999999999999999999865
Q ss_pred ------CCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 533 ------ALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 533 ------~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
....|+||||+++|+|.+++..... .+++....+|
T Consensus 81 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i 121 (303)
T 1zy4_A 81 MTAVKKKSTLFIQMEYCENGTLYDLIHSENL--NQQRDEYWRL 121 (303)
T ss_dssp -----CEEEEEEEEECCCSCBHHHHHHHSCG--GGCHHHHHHH
T ss_pred hcccccCCceEEEEecCCCCCHHHhhhcccc--ccchHHHHHH
Confidence 3568999999999999999985432 3555555444
No 299
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=99.30 E-value=2.1e-12 Score=127.77 Aligned_cols=107 Identities=15% Similarity=0.252 Sum_probs=85.8
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEe----CCe
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSH----ALH 535 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~----~~~ 535 (571)
.++|++.+.||+|+||.||+|. ..+++.||||++... .....+.+.+|++++++++||||+++++++.. ...
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 104 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH---EQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHE 104 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES---SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC---CHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCce
Confidence 3569999999999999999999 468999999998643 23446789999999999999999999999973 347
Q ss_pred eEEEEeccCCCChhhhhccC-CCccCCCHHHHhhhc
Q 044615 536 SFVVYEYLEMGSLAMNLSND-AAAEQFCWTKRMNAI 570 (571)
Q Consensus 536 ~~lv~e~~~~G~L~~~l~~~-~~~~~l~w~~r~~ia 570 (571)
.|+||||+++|+|.+++... .....+++..+..|+
T Consensus 105 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~ 140 (317)
T 2buj_A 105 AWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLL 140 (317)
T ss_dssp EEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred eEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 89999999999999999752 123457887777664
No 300
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.30 E-value=4.5e-12 Score=124.35 Aligned_cols=98 Identities=27% Similarity=0.357 Sum_probs=77.3
Q ss_pred cCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhh--cCCCCcccEEEEEEeCC----e
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTK--IRHRNIVKFYGFCSHAL----H 535 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~--l~H~niv~l~~~~~~~~----~ 535 (571)
++|.+.+.||+|+||.||+|+. +++.||||++... ....+.+|.+++.. ++||||+++++++.... .
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 75 (303)
T 3gxj_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR------EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ 75 (303)
T ss_dssp GGCCCCEEEEECSSSEEEEC-C-TTSCEEEEECC-T------THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEE
T ss_pred ceeeehhhccCCCCeEEEEEEE-cCcceEEEEeccc------chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccce
Confidence 4689999999999999999986 4889999998643 13567788888877 89999999999998876 7
Q ss_pred eEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 536 SFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 536 ~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
.|+||||+++|+|.+++++. .++|..+..|+
T Consensus 76 ~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~~~ 106 (303)
T 3gxj_A 76 LWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLA 106 (303)
T ss_dssp EEEEEECCTTCCHHHHHHHC----CBCC-CHHHHC
T ss_pred eEEEEeccCCCCHHHHHhcc----CcchHHHHHHH
Confidence 89999999999999999653 34555444443
No 301
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=99.30 E-value=5.7e-12 Score=125.24 Aligned_cols=107 Identities=24% Similarity=0.405 Sum_probs=85.5
Q ss_pred cCCCccCeeeccCcceEEEEEc-CCCCEE--EEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCeeE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-PTGEIV--DVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALHSF 537 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~v--avK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~ 537 (571)
++|+..+.||+|+||.||+|+. .++..+ |+|.+..... ....+.+.+|+++++++ +||||+++++++.+.+..|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~--~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~ 102 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS--KDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLY 102 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC--------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccc--hHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceE
Confidence 4688999999999999999984 466654 9999874322 22346789999999999 9999999999999999999
Q ss_pred EEEeccCCCChhhhhccCC-------------CccCCCHHHHhhhc
Q 044615 538 VVYEYLEMGSLAMNLSNDA-------------AAEQFCWTKRMNAI 570 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~-------------~~~~l~w~~r~~ia 570 (571)
+||||+++|+|.+++.... ....+++.+...|+
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 148 (327)
T 1fvr_A 103 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFA 148 (327)
T ss_dssp EEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHH
Confidence 9999999999999998643 12357777776654
No 302
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=99.30 E-value=3.4e-12 Score=126.60 Aligned_cols=104 Identities=20% Similarity=0.201 Sum_probs=80.6
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCC-----chHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCe
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPD-----EMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALH 535 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~-----~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 535 (571)
++|.+.+.||+|+||.||+|. ..+++.||||.+...... .......+.+|++++++++||||+++++++....
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 88 (322)
T 2ycf_A 10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED- 88 (322)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS-
T ss_pred hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc-
Confidence 469999999999999999998 457899999999754321 1122345889999999999999999999997655
Q ss_pred eEEEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 536 SFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 536 ~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
.|+||||+++|+|.+++.... .+++.....+
T Consensus 89 ~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~ 119 (322)
T 2ycf_A 89 YYIVLELMEGGELFDKVVGNK---RLKEATCKLY 119 (322)
T ss_dssp EEEEEECCTTEETHHHHSTTC---CCCHHHHHHH
T ss_pred eEEEEecCCCCcHHHHHhccC---CCCHHHHHHH
Confidence 899999999999999997432 4666655544
No 303
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=99.30 E-value=3.3e-12 Score=129.07 Aligned_cols=104 Identities=16% Similarity=0.160 Sum_probs=85.7
Q ss_pred ccCCCccCeeeccCcceEEEEE------cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcC---CCCcccEEEEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK------LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR---HRNIVKFYGFCS 531 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~------~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~---H~niv~l~~~~~ 531 (571)
.+.|.+.+.||+|+||.||+|. ..+++.||||++.... ..++.+|++++.+++ |+||+++++++.
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~------~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~ 137 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN------PWEFYIGTQLMERLKPSMQHMFMKFYSAHL 137 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC------HHHHHHHHHHHHHSCGGGGGGBCCEEEEEE
T ss_pred CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC------hhHHHHHHHHHHHhhhhhhhhhhhhheeee
Confidence 4568999999999999999993 4578999999997532 356778888888876 999999999999
Q ss_pred eCCeeEEEEeccCCCChhhhhccCC--CccCCCHHHHhhhc
Q 044615 532 HALHSFVVYEYLEMGSLAMNLSNDA--AAEQFCWTKRMNAI 570 (571)
Q Consensus 532 ~~~~~~lv~e~~~~G~L~~~l~~~~--~~~~l~w~~r~~ia 570 (571)
..+..|+|||||++|+|.+++.... ....++|..++.|+
T Consensus 138 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~ 178 (365)
T 3e7e_A 138 FQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFA 178 (365)
T ss_dssp CSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHH
T ss_pred cCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHH
Confidence 9999999999999999999997422 23468888887775
No 304
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=99.29 E-value=6.3e-12 Score=124.13 Aligned_cols=104 Identities=26% Similarity=0.385 Sum_probs=81.9
Q ss_pred HccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEE
Q 044615 460 ATNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFV 538 (571)
Q Consensus 460 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 538 (571)
..+.|++.+.||+|+||.||+|.. .+|+.||||.+..... .+.+.+|++++++++||||+++++++.+.+..|+
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 101 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESD-----LQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWI 101 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSC-----CHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHH-----HHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEE
Confidence 345799999999999999999994 5799999999975431 3568899999999999999999999999999999
Q ss_pred EEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 539 VYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||||+++|+|.+++.... ..+++.....|+
T Consensus 102 v~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~ 131 (314)
T 3com_A 102 VMEYCGAGSVSDIIRLRN--KTLTEDEIATIL 131 (314)
T ss_dssp EEECCTTEEHHHHHHHHT--CCCCHHHHHHHH
T ss_pred EeecCCCCCHHHHHHhcC--CCCCHHHHHHHH
Confidence 999999999999997432 246776666553
No 305
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=99.29 E-value=5.6e-12 Score=127.28 Aligned_cols=110 Identities=16% Similarity=0.228 Sum_probs=89.7
Q ss_pred HHHccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCc-----hHhHHHHHHHHHHHhhc-CCCCcccEEEEE
Q 044615 458 IRATNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDE-----MACQQEFLNEVNALTKI-RHRNIVKFYGFC 530 (571)
Q Consensus 458 ~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~-----~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~ 530 (571)
....++|++.+.||+|+||.||+|.. .+|+.||||++....... ....+.+.+|+.++.++ +||||+++++++
T Consensus 90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 169 (365)
T 2y7j_A 90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY 169 (365)
T ss_dssp HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence 34456799999999999999999995 589999999997654221 12245688999999999 899999999999
Q ss_pred EeCCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 531 SHALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 531 ~~~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
......|+||||+++|+|.+++.+. ..+++.....|+
T Consensus 170 ~~~~~~~lv~e~~~g~~L~~~l~~~---~~l~~~~~~~i~ 206 (365)
T 2y7j_A 170 ESSSFMFLVFDLMRKGELFDYLTEK---VALSEKETRSIM 206 (365)
T ss_dssp EBSSEEEEEECCCTTCBHHHHHHHH---SSCCHHHHHHHH
T ss_pred eeCCEEEEEEEeCCCCcHHHHHHhc---CCCCHHHHHHHH
Confidence 9999999999999999999999743 246777666553
No 306
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=99.29 E-value=5.2e-12 Score=125.70 Aligned_cols=101 Identities=23% Similarity=0.175 Sum_probs=85.6
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCeeEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv 539 (571)
++|++.+.||+|+||.||+|. ..+++.||||++...... +.+.+|+++++++ +||||+++++++...+..|+|
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-----~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv 83 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRA-----PQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMV 83 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSS-----CCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEE
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccch-----HHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEE
Confidence 569999999999999999999 568999999998754322 3578999999999 999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+ +|+|.+++.... ..++|..++.|+
T Consensus 84 ~e~~-~~~L~~~~~~~~--~~~~~~~~~~i~ 111 (330)
T 2izr_A 84 LELL-GPSLEDLFDLCD--RTFSLKTVLMIA 111 (330)
T ss_dssp EECC-CCBHHHHHHHTT--TCCCHHHHHHHH
T ss_pred EEeC-CCCHHHHHHHcC--CCCCHHHHHHHH
Confidence 9999 999999998542 357888777664
No 307
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=99.29 E-value=1.8e-12 Score=129.31 Aligned_cols=107 Identities=18% Similarity=0.144 Sum_probs=87.9
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCch-----HhHHHHHHHHHHHhhcCCCCcccEEEEEEeCC
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEM-----ACQQEFLNEVNALTKIRHRNIVKFYGFCSHAL 534 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~-----~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 534 (571)
.++|+..+.||+|+||.||+|. ..+++.||||++........ ...+.+.+|++++++++||||+++++++.+.+
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~ 102 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG 102 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence 4579999999999999999998 56899999999976543211 12345778999999999999999999999999
Q ss_pred eeEEEEeccCCC-ChhhhhccCCCccCCCHHHHhhhc
Q 044615 535 HSFVVYEYLEMG-SLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 535 ~~~lv~e~~~~G-~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
..++||||+.+| +|.+++.... .+++..+..|+
T Consensus 103 ~~~lv~e~~~~g~~l~~~~~~~~---~l~~~~~~~i~ 136 (335)
T 3dls_A 103 FFQLVMEKHGSGLDLFAFIDRHP---RLDEPLASYIF 136 (335)
T ss_dssp EEEEEEECCTTSCBHHHHHHTCC---CCCHHHHHHHH
T ss_pred EEEEEEEeCCCCccHHHHHHhcC---CCCHHHHHHHH
Confidence 999999999877 9999997543 47777766654
No 308
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.29 E-value=6.1e-12 Score=135.68 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=82.3
Q ss_pred CCccC-eeeccCcceEEEEEcC---CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 464 FDDGH-CIGNGGQGSVYKAKLP---TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 464 ~~~~~-~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
+.+.+ .||+|+||.||+|... ++..||||+++.... ....++|.+|+++|++++|||||+++++|.. +..|+|
T Consensus 337 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv 413 (613)
T 2ozo_A 337 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTE--KADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLV 413 (613)
T ss_dssp EEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCS--STTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEE
T ss_pred eeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCC--hHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEE
Confidence 33334 7999999999999743 566799999976432 2346789999999999999999999999976 568999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||||++|+|.+++.... ..++|..+..|+
T Consensus 414 ~E~~~~g~L~~~l~~~~--~~l~~~~~~~i~ 442 (613)
T 2ozo_A 414 MEMAGGGPLHKFLVGKR--EEIPVSNVAELL 442 (613)
T ss_dssp EECCTTCBHHHHHTTCT--TTSCHHHHHHHH
T ss_pred EEeCCCCcHHHHHhhcc--CCCCHHHHHHHH
Confidence 99999999999997543 357888777664
No 309
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=99.29 E-value=1.1e-11 Score=121.86 Aligned_cols=104 Identities=30% Similarity=0.342 Sum_probs=84.5
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
.++|.+.+.||+|+||.||+|... ..+|+|+++.... .....+.|.+|++++++++||||+++++++. .+..++||
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~ 110 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDP-TPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVT 110 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCC-CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEE
Confidence 356899999999999999999863 3589999875433 3345678999999999999999999999874 55689999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||+++|+|.+++..... .+++.++..|+
T Consensus 111 e~~~~~~L~~~l~~~~~--~~~~~~~~~i~ 138 (307)
T 3lb7_A 111 QWCEGSSLYKHLHVQET--KFQMFQLIDIA 138 (307)
T ss_dssp ECCSSCBHHHHHHTSCC--CCCHHHHHHHH
T ss_pred ecCCCCcHHHHHHhccc--CCCHHHHHHHH
Confidence 99999999999975433 57777776654
No 310
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=99.29 E-value=4.4e-12 Score=125.32 Aligned_cols=101 Identities=23% Similarity=0.372 Sum_probs=82.9
Q ss_pred HHHHHHHccCCCccCeeeccCcceEEEEEc------CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccE
Q 044615 454 HEEIIRATNNFDDGHCIGNGGQGSVYKAKL------PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKF 526 (571)
Q Consensus 454 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l 526 (571)
..+.....++|.+.+.||+|+||.||+|.. .+++.||||++.... .....+.+.+|++++.++ +||||+++
T Consensus 19 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 19 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred ccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCC--CcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 344444567899999999999999999972 356889999997543 233456799999999999 79999999
Q ss_pred EEEEEeCC-eeEEEEeccCCCChhhhhccCC
Q 044615 527 YGFCSHAL-HSFVVYEYLEMGSLAMNLSNDA 556 (571)
Q Consensus 527 ~~~~~~~~-~~~lv~e~~~~G~L~~~l~~~~ 556 (571)
++++...+ ..|+||||+++|+|.+++....
T Consensus 97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~ 127 (316)
T 2xir_A 97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKR 127 (316)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHTCT
T ss_pred EEEEecCCCceEEEEEcCCCCcHHHHHHhcc
Confidence 99997754 5899999999999999998654
No 311
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=99.28 E-value=4.1e-12 Score=123.44 Aligned_cols=101 Identities=27% Similarity=0.396 Sum_probs=83.6
Q ss_pred cCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEe--------
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSH-------- 532 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~-------- 532 (571)
++|+..+.||+|+||.||+|.. .+++.||+|.+.... +.+.+|++++++++||||+++++++..
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~ 83 (284)
T 2a19_B 11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN-------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETS 83 (284)
T ss_dssp HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS-------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC----
T ss_pred cccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc-------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccc
Confidence 4589999999999999999995 489999999997542 346789999999999999999999865
Q ss_pred --------CCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 533 --------ALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 533 --------~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
....|+||||+++|+|.+++.... ...++|..+..|+
T Consensus 84 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~ 128 (284)
T 2a19_B 84 SKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRR-GEKLDKVLALELF 128 (284)
T ss_dssp -----CCEEEEEEEEECCCCSCBHHHHHHHGG-GSCCCHHHHHHHH
T ss_pred cccccccCcceEEEEEeccCCCCHHHHHhhcc-CCCCCHHHHHHHH
Confidence 345899999999999999997542 2357777776654
No 312
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=99.28 E-value=8e-12 Score=122.39 Aligned_cols=105 Identities=27% Similarity=0.373 Sum_probs=82.9
Q ss_pred cCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
++|+..+.||+|+||.||+|+. .+|+.||||++...... ....+.+.+|++++++++||||+++++++.+.+..|+||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTET-EGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF 81 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC---------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccc-hhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEE
Confidence 5789999999999999999994 58999999999754322 122467889999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
||++ |+|.+++..... ..+++.....|
T Consensus 82 e~~~-~~L~~~~~~~~~-~~~~~~~~~~~ 108 (299)
T 2r3i_A 82 EFLH-QDLKKFMDASAL-TGIPLPLIKSY 108 (299)
T ss_dssp ECCS-EEHHHHHHHTTT-TCCCHHHHHHH
T ss_pred Eccc-CCHHHHHHhhhc-cCCCHHHHHHH
Confidence 9998 699999975432 24666665554
No 313
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=99.27 E-value=9.4e-12 Score=121.35 Aligned_cols=104 Identities=33% Similarity=0.429 Sum_probs=83.5
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
.+.|++.+.||+|+||.||+|+.. ..||||++..... .....+.|.+|++++++++||||+++++++ .....++||
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~ 98 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAP-TPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVT 98 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCC-CHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEE
Confidence 356999999999999999999863 3599999976543 334567899999999999999999999965 556689999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||+++|+|.+++.... ..++|..++.|+
T Consensus 99 e~~~~~~L~~~l~~~~--~~~~~~~~~~i~ 126 (289)
T 3og7_A 99 QWCEGSSLYHHLHASE--TKFEMKKLIDIA 126 (289)
T ss_dssp ECCCEEEHHHHHTTC-----CCHHHHHHHH
T ss_pred EecCCCcHHHHHhhcc--CCCCHHHHHHHH
Confidence 9999999999997543 357777776654
No 314
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=99.27 E-value=9.9e-12 Score=124.39 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=87.6
Q ss_pred cCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCC--CCcccEEEEEEeCCeeEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH--RNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H--~niv~l~~~~~~~~~~~lv 539 (571)
+.|++.+.||+|+||.||+|...+++.||||++...... ....+.+.+|++++.+++| |||+++++++.+....|+|
T Consensus 9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEAD-NQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCC-HHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccc-hHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 458999999999999999999878999999999765433 3446789999999999987 9999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|| +.+|+|.+++.... .+++..+..|+
T Consensus 88 ~e-~~~~~L~~~l~~~~---~~~~~~~~~i~ 114 (343)
T 3dbq_A 88 ME-CGNIDLNSWLKKKK---SIDPWERKSYW 114 (343)
T ss_dssp EC-CCSEEHHHHHHHSC---CCCHHHHHHHH
T ss_pred Ee-CCCCCHHHHHHhcC---CCCHHHHHHHH
Confidence 99 56789999998543 46777666554
No 315
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=99.27 E-value=1.1e-11 Score=123.11 Aligned_cols=107 Identities=25% Similarity=0.382 Sum_probs=87.0
Q ss_pred HHHccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEe---
Q 044615 458 IRATNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSH--- 532 (571)
Q Consensus 458 ~~~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~--- 532 (571)
....+.|++.+.||+|+||.||+|. ..+++.||||++...... .+.+.+|+.+++++ +||||+++++++..
T Consensus 20 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~----~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~ 95 (326)
T 2x7f_A 20 RDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDE----EEEIKQEINMLKKYSHHRNIATYYGAFIKKNP 95 (326)
T ss_dssp CCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSST----THHHHHHHHHHHHHCCSTTBCCEEEEEEECC-
T ss_pred cCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCccc----HHHHHHHHHHHHhccCCCCeeeeeeEEeeccC
Confidence 3456779999999999999999999 468999999999754322 36788999999998 89999999999987
Q ss_pred ---CCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 533 ---ALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 533 ---~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
.+..|+||||+++|+|.+++.... ...+++.....|
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i 134 (326)
T 2x7f_A 96 PGMDDQLWLVMEFCGAGSVTDLIKNTK-GNTLKEEWIAYI 134 (326)
T ss_dssp -CCCCEEEEEEECCTTEEHHHHHHHSG-GGCCCHHHHHHH
T ss_pred ccccceEEEEEEcCCCCcHHHHHHhcc-cCCCCHHHHHHH
Confidence 467899999999999999997542 234666555444
No 316
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=99.26 E-value=1.2e-11 Score=126.09 Aligned_cols=104 Identities=18% Similarity=0.209 Sum_probs=87.0
Q ss_pred cCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcC--CCCcccEEEEEEeCCeeEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR--HRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~--H~niv~l~~~~~~~~~~~lv 539 (571)
..|++.+.||+|+||.||+|...+++.||||++...... ....+.+.+|++++++++ |||||++++++...+..|+|
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 134 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEAD-NQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 134 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCC-HHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEeccccc-HHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEE
Confidence 359999999999999999999777999999999765432 345678999999999996 59999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|| +.+|+|.+++.... .+++..+..|+
T Consensus 135 ~E-~~~~~L~~~l~~~~---~~~~~~~~~i~ 161 (390)
T 2zmd_A 135 ME-CGNIDLNSWLKKKK---SIDPWERKSYW 161 (390)
T ss_dssp EE-CCSEEHHHHHHHCS---SCCHHHHHHHH
T ss_pred Ee-cCCCCHHHHHHhcC---CCCHHHHHHHH
Confidence 99 67889999998543 46776666553
No 317
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=99.26 E-value=1e-11 Score=121.23 Aligned_cols=105 Identities=24% Similarity=0.333 Sum_probs=82.4
Q ss_pred ccCCCccC-eeeccCcceEEEEEc---CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCee
Q 044615 461 TNNFDDGH-CIGNGGQGSVYKAKL---PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS 536 (571)
Q Consensus 461 ~~~~~~~~-~lg~G~~g~V~~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 536 (571)
.+.|.+.+ .||+|+||.||+|.. .+++.||||++...... ....+++.+|++++++++||||+++++++ ..+..
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~ 92 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAND-PALKDELLAEANVMQQLDNPYIVRMIGIC-EAESW 92 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC------CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSE
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccC-HHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCc
Confidence 34677777 999999999999952 35788999999755322 23467899999999999999999999999 56678
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|+||||+++|+|.+++.... .+++.....|+
T Consensus 93 ~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~ 123 (291)
T 1xbb_A 93 MLVMEMAELGPLNKYLQQNR---HVKDKNIIELV 123 (291)
T ss_dssp EEEEECCTTEEHHHHHHHCT---TCCHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHhCc---CCCHHHHHHHH
Confidence 99999999999999998542 36666665553
No 318
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=99.26 E-value=6.4e-12 Score=124.92 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=87.9
Q ss_pred HccCCCcc-CeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCee
Q 044615 460 ATNNFDDG-HCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALHS 536 (571)
Q Consensus 460 ~~~~~~~~-~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~ 536 (571)
-.+.|.+. +.||+|+||.||+|. ..+++.||+|++....... .....+.+|+.++..+ +||||+++++++.+.+..
T Consensus 26 ~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~ 104 (327)
T 3lm5_A 26 FNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQ-DCRAEILHEIAVLELAKSCPRVINLHEVYENTSEI 104 (327)
T ss_dssp HHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTE-ECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred hhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcch-HHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeE
Confidence 33457666 889999999999999 4579999999997643332 3356789999999998 569999999999999999
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|+||||+++|+|.+++.... ...+++.....|+
T Consensus 105 ~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~i~ 137 (327)
T 3lm5_A 105 ILILEYAAGGEIFSLCLPEL-AEMVSENDVIRLI 137 (327)
T ss_dssp EEEEECCTTEEGGGGGSSCC--CCCCHHHHHHHH
T ss_pred EEEEEecCCCcHHHHHHHhc-ccCCCHHHHHHHH
Confidence 99999999999999996532 2357777776654
No 319
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=99.26 E-value=1.2e-11 Score=121.25 Aligned_cols=99 Identities=25% Similarity=0.402 Sum_probs=80.3
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhh--cCCCCcccEEEEEEeC----C
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTK--IRHRNIVKFYGFCSHA----L 534 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~--l~H~niv~l~~~~~~~----~ 534 (571)
.++|++.+.||+|+||.||+|.. +++.||||++... ..+.+.+|.+++.. ++||||+++++++... .
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~------~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~ 79 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR------DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSST 79 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG------GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc------cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCc
Confidence 35699999999999999999987 6889999998642 23556677777666 8999999999997653 4
Q ss_pred eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 535 HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
..|+||||+++|+|.++++.. .++|..+++|+
T Consensus 80 ~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~ 111 (301)
T 3q4u_A 80 QLWLITHYHEMGSLYDYLQLT----TLDTVSCLRIV 111 (301)
T ss_dssp EEEEEECCCTTCBHHHHHTTC----CBCHHHHHHHH
T ss_pred eeEEehhhccCCCHHHHHhhc----ccCHHHHHHHH
Confidence 589999999999999999643 47788777664
No 320
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=99.25 E-value=1e-11 Score=122.54 Aligned_cols=110 Identities=22% Similarity=0.364 Sum_probs=83.5
Q ss_pred HccCCCccCeeeccCcceEEEEEc-C---CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCC-
Q 044615 460 ATNNFDDGHCIGNGGQGSVYKAKL-P---TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHAL- 534 (571)
Q Consensus 460 ~~~~~~~~~~lg~G~~g~V~~~~~-~---~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~- 534 (571)
..++|.+.+.||+|+||.||+|.. . ++..||||.+...... ....+.+.+|+.++++++||||+++++++.+..
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 110 (313)
T 3brb_A 32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSS-QREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSS 110 (313)
T ss_dssp CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCC-HHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC---
T ss_pred CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccc-hhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccc
Confidence 346788899999999999999973 2 3458999999765433 344577999999999999999999999998754
Q ss_pred ----eeEEEEeccCCCChhhhhccC---CCccCCCHHHHhhhc
Q 044615 535 ----HSFVVYEYLEMGSLAMNLSND---AAAEQFCWTKRMNAI 570 (571)
Q Consensus 535 ----~~~lv~e~~~~G~L~~~l~~~---~~~~~l~w~~r~~ia 570 (571)
..|+||||+++|+|.+++... .....+++.....|+
T Consensus 111 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~ 153 (313)
T 3brb_A 111 QGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFM 153 (313)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHH
T ss_pred cCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHH
Confidence 359999999999999999532 223467888777664
No 321
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=99.25 E-value=8.7e-12 Score=122.54 Aligned_cols=108 Identities=18% Similarity=0.237 Sum_probs=82.8
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCc-hHhHHHHHHHHHHHhhcCCCCcccEEEEEE--eCCee
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDE-MACQQEFLNEVNALTKIRHRNIVKFYGFCS--HALHS 536 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~--~~~~~ 536 (571)
.++|.+.+.||+|+||.||+|. ..+++.||+|++....... ....+.+.+|++++++++||||+++++++. +....
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 3679999999999999999999 4578999999986432111 123567999999999999999999999984 44578
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|+||||+++| +.+++.... ...+++.....|+
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~-~~~~~~~~~~~~~ 115 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVP-EKRFPVCQAHGYF 115 (305)
T ss_dssp EEEEECCSEE-HHHHHHHST-TCSCCHHHHHHHH
T ss_pred EEEehhccCC-HHHHHHhCc-ccccCHHHHHHHH
Confidence 9999999987 777776432 2357777766554
No 322
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=99.25 E-value=6.7e-12 Score=126.66 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=90.9
Q ss_pred HHHHHHHccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCC--------chHhHHHHHHHHHHHhhcCCCCccc
Q 044615 454 HEEIIRATNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPD--------EMACQQEFLNEVNALTKIRHRNIVK 525 (571)
Q Consensus 454 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~--------~~~~~~~~~~Ei~~l~~l~H~niv~ 525 (571)
..++....++|.+.+.||+|+||.||+|...+|+.||||++...... .....+.+.+|++++++++||||++
T Consensus 14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~ 93 (362)
T 3pg1_A 14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG 93 (362)
T ss_dssp HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence 45667778999999999999999999999777999999998643221 1123477999999999999999999
Q ss_pred EEEEEEeC-----CeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 526 FYGFCSHA-----LHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 526 l~~~~~~~-----~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+++++... ...|+||||++ |+|.+++.... ..+++.....|+
T Consensus 94 ~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~ 140 (362)
T 3pg1_A 94 LRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR--IVISPQHIQYFM 140 (362)
T ss_dssp CSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT--SCCCHHHHHHHH
T ss_pred eeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc--cCCCHHHHHHHH
Confidence 99999653 36799999998 68998887543 257777666554
No 323
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=99.25 E-value=1.2e-11 Score=121.19 Aligned_cols=105 Identities=21% Similarity=0.299 Sum_probs=83.0
Q ss_pred cCCCccCeeeccCcceEEEEEcC-C---CCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEe-CCee
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLP-T---GEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSH-ALHS 536 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~-~---~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~-~~~~ 536 (571)
..|+..+.||+|+||.||+|... + +..||+|.+... ......+.+.+|+.++++++||||+++++++.+ .+..
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 102 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI--TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSP 102 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTC--CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCC
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccC--CCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCce
Confidence 45888899999999999999843 2 235899998753 233456789999999999999999999998654 5678
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
++||||+++|+|.++++... ..+++..+..|+
T Consensus 103 ~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~ 134 (298)
T 3f66_A 103 LVVLPYMKHGDLRNFIRNET--HNPTVKDLIGFG 134 (298)
T ss_dssp EEEEECCTTCBHHHHHHCTT--CCCCHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHhcc--cCCCHHHHHHHH
Confidence 99999999999999997543 246777666554
No 324
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=99.25 E-value=1.1e-11 Score=123.25 Aligned_cols=104 Identities=19% Similarity=0.398 Sum_probs=78.8
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCE----EEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCee
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEI----VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS 536 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~----vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 536 (571)
++|+..+.||+|+||.||+|+ ..+++. ||+|.+.... .....++|.+|+.++++++|||||+++++|.+.. .
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~ 91 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT--SPKANKEILDEAYVMASVDNPHVCRLLGICLTST-V 91 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC---------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-E
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeeccccc--CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-e
Confidence 468999999999999999998 445544 5888876432 2233578999999999999999999999998765 7
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
++||||+++|+|.+++..... .++|..++.|+
T Consensus 92 ~~v~e~~~~g~L~~~l~~~~~--~~~~~~~~~~~ 123 (327)
T 3poz_A 92 QLITQLMPFGCLLDYVREHKD--NIGSQYLLNWC 123 (327)
T ss_dssp EEEEECCTTCBHHHHHHHSTT--SCCHHHHHHHH
T ss_pred EEEEEecCCCcHHHHHHhcCC--CCCHHHHHHHH
Confidence 799999999999999986433 47777766654
No 325
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=99.25 E-value=7.3e-12 Score=125.54 Aligned_cols=107 Identities=21% Similarity=0.348 Sum_probs=78.2
Q ss_pred HccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCch--HhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCee
Q 044615 460 ATNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEM--ACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS 536 (571)
Q Consensus 460 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~--~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 536 (571)
..+.|+..+.||+|+||.||+|.. .+|+.||||++........ ...+.+.+|++++++++||||+++++++.+.+..
T Consensus 8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (346)
T 1ua2_A 8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI 87 (346)
T ss_dssp -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence 456799999999999999999994 5799999999975432211 1134688999999999999999999999999999
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
++||||+++ +|.+++..... .+++.....+
T Consensus 88 ~lv~e~~~~-~l~~~~~~~~~--~~~~~~~~~~ 117 (346)
T 1ua2_A 88 SLVFDFMET-DLEVIIKDNSL--VLTPSHIKAY 117 (346)
T ss_dssp EEEEECCSE-EHHHHHTTCCS--SCCSSHHHHH
T ss_pred EEEEEcCCC-CHHHHHHhcCc--CCCHHHHHHH
Confidence 999999986 89988875432 3444444433
No 326
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.25 E-value=3.5e-10 Score=115.38 Aligned_cols=287 Identities=13% Similarity=0.055 Sum_probs=206.0
Q ss_pred hhhcCCCCCCEEEccCCccc-----cCCCCccceeecccc-------cccCCCC------CCCccc-cccccCCCCCCEE
Q 044615 42 KELVRAVQARDTSISFDELH-----EKLLTFEATAHFSVL-------AFTGQDW------PLYSSI-PDEIGNMKSLSDL 102 (571)
Q Consensus 42 ~~l~~~~~l~~l~l~~n~l~-----~~~l~~l~~l~l~~n-------~l~~~~~------~~~~~~-p~~~~~l~~L~~L 102 (571)
..+.++++|+.+++..+--. |..+..|+.+.+..+ .|.+... .....+ ...|.++++|+.+
T Consensus 88 ~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i 167 (394)
T 4fs7_A 88 FAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYV 167 (394)
T ss_dssp TTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred hHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhhcccCCCcEE
Confidence 44678899999999765222 666777766655432 1111000 001111 2457889999999
Q ss_pred ecccCcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCC
Q 044615 103 QLSENILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLN 182 (571)
Q Consensus 103 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 182 (571)
.+.++. .......|.++.+|+.+++..+ ++.+....|.++..|+.+.+..+... +.+......+|+.+.+..+ +.
T Consensus 168 ~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~ 242 (394)
T 4fs7_A 168 SLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FT 242 (394)
T ss_dssp ECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CC
T ss_pred ecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ce
Confidence 998664 4466778999999999999877 56567778999999999988776543 2334455678999988654 33
Q ss_pred ccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhh
Q 044615 183 GSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESL 262 (571)
Q Consensus 183 ~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 262 (571)
..-...+..... |+.+.+..+... .....|..+..++.+....+.+. ...|..+.+|+.+.+..+ +......+|
T Consensus 243 ~i~~~~f~~~~~-l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF 316 (394)
T 4fs7_A 243 ELGKSVFYGCTD-LESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAF 316 (394)
T ss_dssp EECSSTTTTCSS-CCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTT
T ss_pred eccccccccccc-ceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhh
Confidence 233344555554 999999877543 55677888889998888766433 346788999999999765 555667789
Q ss_pred ccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCE
Q 044615 263 SNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSC 342 (571)
Q Consensus 263 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 342 (571)
.++.+|+.+++..+ ++......|.++.+|+.+++..+ ++.+...+|.++++|+.+++..+ ++ .+..+|.++++|+.
T Consensus 317 ~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 317 ESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred cCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 99999999999755 66666788999999999999877 77777788999999999999765 33 33467888777765
Q ss_pred E
Q 044615 343 I 343 (571)
Q Consensus 343 L 343 (571)
+
T Consensus 393 I 393 (394)
T 4fs7_A 393 I 393 (394)
T ss_dssp E
T ss_pred E
Confidence 4
No 327
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=99.25 E-value=1.4e-11 Score=120.61 Aligned_cols=104 Identities=18% Similarity=0.222 Sum_probs=82.8
Q ss_pred CCCccCeeeccCcceEEEEEc-CCC---CEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCee-E
Q 044615 463 NFDDGHCIGNGGQGSVYKAKL-PTG---EIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS-F 537 (571)
Q Consensus 463 ~~~~~~~lg~G~~g~V~~~~~-~~~---~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~-~ 537 (571)
.|...+.||+|+||.||+|.. .++ ..||+|.+... ......+.|.+|++++++++||||+++++++.+.+.. +
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 99 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRI--TEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPH 99 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTC--CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeecccc--ccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcE
Confidence 356678999999999999983 333 37999998753 2334567899999999999999999999999876655 9
Q ss_pred EEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 538 VVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+||||+.+|+|.+++.... ..++|..+..|+
T Consensus 100 ~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~ 130 (298)
T 3pls_A 100 VLLPYMCHGDLLQFIRSPQ--RNPTVKDLISFG 130 (298)
T ss_dssp EEECCCTTCBHHHHHHCTT--CCCBHHHHHHHH
T ss_pred EEEecccCCCHHHHHhccc--cCCCHHHHHHHH
Confidence 9999999999999998643 246777666554
No 328
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=99.24 E-value=1.4e-11 Score=126.00 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=79.4
Q ss_pred cCCCcc-CeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHh-hcCCCCcccEEEEEEe----CC
Q 044615 462 NNFDDG-HCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALT-KIRHRNIVKFYGFCSH----AL 534 (571)
Q Consensus 462 ~~~~~~-~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~-~l~H~niv~l~~~~~~----~~ 534 (571)
++|... +.||+|+||+||+|. ..+++.||||+++.. ..+.+|+.++. ..+||||++++++|.. ..
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~--------~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~ 132 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC--------PKARREVELHWRASQCPHIVRIVDVYENLYAGRK 132 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS--------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc--------hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCc
Confidence 456665 689999999999999 458999999998632 35678888874 4589999999999876 56
Q ss_pred eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 535 HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
..|+|||||++|+|.+++.... ...++|.....|+
T Consensus 133 ~~~lv~E~~~gg~L~~~l~~~~-~~~l~~~~~~~i~ 167 (400)
T 1nxk_A 133 CLLIVMECLDGGELFSRIQDRG-DQAFTEREASEIM 167 (400)
T ss_dssp EEEEEEECCCSEEHHHHHHCC----CCBHHHHHHHH
T ss_pred EEEEEEEeCCCCcHHHHHHHhC-CCCCCHHHHHHHH
Confidence 7899999999999999998643 2357787776654
No 329
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=2.2e-11 Score=122.10 Aligned_cols=94 Identities=26% Similarity=0.203 Sum_probs=71.1
Q ss_pred cccccccCCCCCCEEeccc-CcCcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCcccc
Q 044615 88 SIPDEIGNMKSLSDLQLSE-NILNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIG 166 (571)
Q Consensus 88 ~~p~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 166 (571)
.+|. +..+++|++|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|.+|++|++|+|++|.+++..+..+.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 4677 77778888888885 888776667788888888888888888877777788888888888888888765555555
Q ss_pred CCCCCCEEEccCCCCCc
Q 044615 167 NMNSLSILDLSSNKLNG 183 (571)
Q Consensus 167 ~l~~L~~L~L~~n~l~~ 183 (571)
.++ |+.|+|.+|.+..
T Consensus 102 ~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCC-CCEEECCSSCCCC
T ss_pred cCC-ceEEEeeCCCccC
Confidence 554 8888888877764
No 330
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=99.24 E-value=1.5e-11 Score=127.06 Aligned_cols=105 Identities=20% Similarity=0.302 Sum_probs=86.3
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC-----C
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA-----L 534 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~-----~ 534 (571)
.++|++.+.||+|+||.||+|. ..+++.||||++.... ......+++.+|++++++++|||||++++++... .
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 103 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMF-EDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD 103 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTT-TSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchh-cChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence 4579999999999999999999 5578999999997543 2334567899999999999999999999999776 5
Q ss_pred eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 535 HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
..|+||||++ |+|.++++.. ..+++.....|+
T Consensus 104 ~~~lv~e~~~-~~L~~~~~~~---~~l~~~~~~~i~ 135 (432)
T 3n9x_A 104 ELYIVLEIAD-SDLKKLFKTP---IFLTEEHIKTIL 135 (432)
T ss_dssp CEEEEEECCS-EEHHHHHHSS---CCCCHHHHHHHH
T ss_pred eEEEEEecCC-cCHHHHHhcc---CCCCHHHHHHHH
Confidence 6899999997 5999999754 246676665543
No 331
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=99.24 E-value=8.9e-12 Score=126.05 Aligned_cols=104 Identities=22% Similarity=0.327 Sum_probs=81.9
Q ss_pred CCCccCeeeccCcceEEEEEcC--CC--CEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEe-CCeeE
Q 044615 463 NFDDGHCIGNGGQGSVYKAKLP--TG--EIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSH-ALHSF 537 (571)
Q Consensus 463 ~~~~~~~lg~G~~g~V~~~~~~--~~--~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~-~~~~~ 537 (571)
.|...+.||+|+||.||+|... ++ ..||||.+.... .....++|.+|+.++++++|||||++++++.+ .+..|
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~ 167 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT--DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 167 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCS--CSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeE
Confidence 3667789999999999999842 22 368999986532 23446789999999999999999999998754 45789
Q ss_pred EEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 538 VVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+||||+++|+|.++++.... .++|...+.++
T Consensus 168 lv~e~~~~g~L~~~l~~~~~--~~~~~~~~~i~ 198 (373)
T 3c1x_A 168 VVLPYMKHGDLRNFIRNETH--NPTVKDLIGFG 198 (373)
T ss_dssp EEEECCTTCBHHHHHHCTTC--CCBHHHHHHHH
T ss_pred EEEECCCCCCHHHHHhhccc--CCCHHHHHHHH
Confidence 99999999999999975433 46676665543
No 332
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=99.23 E-value=2e-11 Score=119.63 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=81.5
Q ss_pred cCCCcc-CeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHH-hhcCCCCcccEEEEEEe----CC
Q 044615 462 NNFDDG-HCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNAL-TKIRHRNIVKFYGFCSH----AL 534 (571)
Q Consensus 462 ~~~~~~-~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l-~~l~H~niv~l~~~~~~----~~ 534 (571)
++|.+. +.||+|+||.||+|. ..+++.||+|++... ..+.+|+.++ +..+||||+++++++.. ..
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 88 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC--------PKARREVELHWRASQCPHIVRIVDVYENLYAGRK 88 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS--------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc--------HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCc
Confidence 457776 779999999999999 568999999998632 4567899887 66799999999999987 67
Q ss_pred eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 535 HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
..|+||||+++|+|.+++..... ..+++.....|+
T Consensus 89 ~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~ 123 (299)
T 3m2w_A 89 CLLIVMECLDGGELFSRIQDRGD-QAFTEREASEIM 123 (299)
T ss_dssp EEEEEECCCCSCBHHHHHHHCTT-CCCBHHHHHHHH
T ss_pred eEEEEEeecCCCcHHHHHHhccC-CCCCHHHHHHHH
Confidence 78999999999999999986432 357777766654
No 333
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=99.23 E-value=2.7e-11 Score=122.02 Aligned_cols=106 Identities=22% Similarity=0.174 Sum_probs=87.4
Q ss_pred HHccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcC-----CCCcccEEEEEEe
Q 044615 459 RATNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR-----HRNIVKFYGFCSH 532 (571)
Q Consensus 459 ~~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~-----H~niv~l~~~~~~ 532 (571)
...++|.+.+.||+|+||.||+|+ ..+++.||||++... ....+.+.+|+.+++.++ |||||++++++..
T Consensus 32 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~ 107 (360)
T 3llt_A 32 LLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI----KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMY 107 (360)
T ss_dssp EETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC----HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEE
T ss_pred EecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc----hhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeE
Confidence 345689999999999999999999 468999999998642 233567888999999886 9999999999999
Q ss_pred CCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 533 ALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 533 ~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
.+..|+||||+ +|+|.+++..... ..+++.....|+
T Consensus 108 ~~~~~lv~e~~-~~~L~~~~~~~~~-~~~~~~~~~~i~ 143 (360)
T 3llt_A 108 YDHMCLIFEPL-GPSLYEIITRNNY-NGFHIEDIKLYC 143 (360)
T ss_dssp TTEEEEEECCC-CCBHHHHHHHTTT-CCCCHHHHHHHH
T ss_pred CCeeEEEEcCC-CCCHHHHHHhcCC-CCCCHHHHHHHH
Confidence 99999999999 8999999985432 246776665543
No 334
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=99.23 E-value=2.8e-12 Score=137.22 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=86.1
Q ss_pred cCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEe------CC
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSH------AL 534 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~------~~ 534 (571)
++|++.+.||+|+||.||+|.. .+|+.||||++.... .....+.+.+|++++++++||||+++++++.. .+
T Consensus 14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~--~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~ 91 (676)
T 3qa8_A 14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL--SPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPND 91 (676)
T ss_dssp ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC--CHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTS
T ss_pred CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC--CHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCC
Confidence 6799999999999999999984 579999999987542 33456789999999999999999999999765 66
Q ss_pred eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 535 HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
..|+||||+++|+|.+++........+++.....|+
T Consensus 92 ~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~ 127 (676)
T 3qa8_A 92 LPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLL 127 (676)
T ss_dssp SCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHH
Confidence 789999999999999999865544456666555543
No 335
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=99.23 E-value=8.1e-12 Score=121.82 Aligned_cols=106 Identities=25% Similarity=0.397 Sum_probs=76.8
Q ss_pred cCCCccCeeeccCcceEEEEEc--CCCC--EEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL--PTGE--IVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSF 537 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~--~~~~--~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 537 (571)
++|++.+.||+|+||.||+|.. .+++ .||||++...........+.+.+|++++++++||||+++++++.+.. .+
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~ 96 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK 96 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence 4689999999999999999984 2333 68999997654433445678999999999999999999999997765 88
Q ss_pred EEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 538 VVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+||||+++|+|.+++.... ..+++.....++
T Consensus 97 ~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~ 127 (291)
T 1u46_A 97 MVTELAPLGSLLDRLRKHQ--GHFLLGTLSRYA 127 (291)
T ss_dssp EEEECCTTCBHHHHHHHHG--GGSCHHHHHHHH
T ss_pred eeEecccCCCHHHHHHhcc--CCcCHHHHHHHH
Confidence 9999999999999997542 246676665553
No 336
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=99.23 E-value=4.3e-12 Score=125.95 Aligned_cols=103 Identities=21% Similarity=0.284 Sum_probs=81.5
Q ss_pred cCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
++|.+.+.||+|+||.||+|.. .+++.||||++...... .....+.+|++++++++||||+++++++.+.+..++||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 79 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEE--GAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVF 79 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC--------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEeccccc--ccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEe
Confidence 4688999999999999999994 58999999999754321 11224568999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
||++ |+|.+++...+. .+++.....|
T Consensus 80 e~~~-~~l~~~~~~~~~--~~~~~~~~~~ 105 (324)
T 3mtl_A 80 EYLD-KDLKQYLDDCGN--IINMHNVKLF 105 (324)
T ss_dssp ECCS-EEHHHHHHHTTT--CCCHHHHHHH
T ss_pred cccc-cCHHHHHHhcCC--CCCHHHHHHH
Confidence 9998 599999875433 4666655544
No 337
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.23 E-value=1e-11 Score=135.91 Aligned_cols=102 Identities=23% Similarity=0.368 Sum_probs=83.2
Q ss_pred cCCCccCeeeccCcceEEEEEcC--CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCe----
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLP--TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALH---- 535 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~---- 535 (571)
+.|++.+.||+|+||.||+|... +++.||||++.... .....+.|.+|++++++++|||||++++++...+.
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 157 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSG--DAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDP 157 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSC--CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccC--CHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCc
Confidence 57999999999999999999843 68999999986532 23445679999999999999999999999987665
Q ss_pred -eEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 536 -SFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 536 -~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
.|+||||++||+|.+++.. .++|.+++.|+
T Consensus 158 ~~~lv~E~~~g~~L~~~~~~-----~l~~~~~~~~~ 188 (681)
T 2pzi_A 158 VGYIVMEYVGGQSLKRSKGQ-----KLPVAEAIAYL 188 (681)
T ss_dssp EEEEEEECCCCEECC----C-----CCCHHHHHHHH
T ss_pred eeEEEEEeCCCCcHHHHHhC-----CCCHHHHHHHH
Confidence 6999999999999987753 57888887764
No 338
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=99.23 E-value=1.3e-11 Score=128.65 Aligned_cols=103 Identities=18% Similarity=0.283 Sum_probs=75.1
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC-----Ce
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA-----LH 535 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~-----~~ 535 (571)
++|++.+.||+|+||.||+|. ..+++.||||++.... ......+++.+|++++++++|||||++++++... ..
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVF-EDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhh-cCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 579999999999999999998 5589999999997543 3334567899999999999999999999999543 56
Q ss_pred eEEEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 536 SFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 536 ~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
.|+||||+. |+|.+++.... .+++.....|
T Consensus 132 ~~lv~e~~~-~~L~~~~~~~~---~l~~~~~~~~ 161 (458)
T 3rp9_A 132 LYVVLEIAD-SDFKKLFRTPV---YLTELHIKTL 161 (458)
T ss_dssp EEEEECCCS-EEHHHHHHSSC---CCCHHHHHHH
T ss_pred EEEEEeccc-cchhhhcccCC---CCCHHHHHHH
Confidence 899999985 69999997542 4666655544
No 339
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=99.23 E-value=2.4e-11 Score=117.87 Aligned_cols=105 Identities=18% Similarity=0.270 Sum_probs=83.6
Q ss_pred ccCCCccCeeeccCcceEEEEEcC----CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCee
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLP----TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS 536 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 536 (571)
.++|...+.||+|+||.||+|... ++..||+|.+.... .....+.|.+|++++++++||||+++++++.+ +..
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~ 87 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC--TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPT 87 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS--CHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSC
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc--CchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCC
Confidence 356889999999999999999842 23469999987643 23446789999999999999999999999865 456
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|+||||+++|+|.+++..... .+++.....++
T Consensus 88 ~~v~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~ 119 (281)
T 3cc6_A 88 WIIMELYPYGELGHYLERNKN--SLKVLTLVLYS 119 (281)
T ss_dssp EEEEECCTTCBHHHHHHHHTT--TCCHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHhccc--cCCHHHHHHHH
Confidence 899999999999999975432 46676666553
No 340
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=99.22 E-value=4.1e-12 Score=127.85 Aligned_cols=105 Identities=18% Similarity=0.243 Sum_probs=85.0
Q ss_pred cCCCccCeeeccCcceEEEEEc----CCCCEEEEEEccCCCCC-chHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCe
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL----PTGEIVDVKKFHSPLPD-EMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALH 535 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~~~-~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~ 535 (571)
++|++.+.||+|+||.||+|+. .+++.||||++...... .....+.+.+|++++.++ +||||+++++++...+.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 133 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 133 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence 5799999999999999999985 37899999998653211 112235577899999999 69999999999999999
Q ss_pred eEEEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 536 SFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 536 ~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
.|+||||+++|+|.+++.... .+++.....+
T Consensus 134 ~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~ 164 (355)
T 1vzo_A 134 LHLILDYINGGELFTHLSQRE---RFTEHEVQIY 164 (355)
T ss_dssp EEEEECCCCSCBHHHHHHHHS---CCCHHHHHHH
T ss_pred EEEEeecCCCCCHHHHHHHcC---CCCHHHHHHH
Confidence 999999999999999997542 4666665554
No 341
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=99.22 E-value=3.8e-11 Score=119.35 Aligned_cols=87 Identities=17% Similarity=0.283 Sum_probs=77.0
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcC-CCCcccEEEEEEe--CCeeE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR-HRNIVKFYGFCSH--ALHSF 537 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~--~~~~~ 537 (571)
++|++.+.||+|+||.||+|. ..+++.||||++.... .+.+.+|++++++++ ||||+++++++.+ ....+
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~ 109 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK------KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPA 109 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC------HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc------hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceE
Confidence 569999999999999999998 5689999999987432 467899999999997 9999999999988 56789
Q ss_pred EEEeccCCCChhhhhcc
Q 044615 538 VVYEYLEMGSLAMNLSN 554 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~ 554 (571)
+||||+++|+|.+++..
T Consensus 110 lv~e~~~~~~l~~~~~~ 126 (330)
T 3nsz_A 110 LVFEHVNNTDFKQLYQT 126 (330)
T ss_dssp EEEECCCCCCHHHHGGG
T ss_pred EEEeccCchhHHHHHHh
Confidence 99999999999998863
No 342
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=99.22 E-value=2.5e-11 Score=121.88 Aligned_cols=106 Identities=26% Similarity=0.411 Sum_probs=84.2
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEe-------
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSH------- 532 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~------- 532 (571)
.++|++.+.||+|+||.||+|+ ..+|+.||||++....... .....+.+|++++++++||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 94 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE-GFPITALREIKILQLLKHENVVNLIEICRTKASPYNR 94 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSS-SSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccc-cchHHHHHHHHHHHhccCCCcccHhheeecccccccc
Confidence 3569999999999999999999 4689999999996554322 224568899999999999999999999987
Q ss_pred -CCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 533 -ALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 533 -~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
.+..|+||||+++ +|.+.+..... .+++.....|+
T Consensus 95 ~~~~~~lv~e~~~~-~l~~~l~~~~~--~~~~~~~~~i~ 130 (351)
T 3mi9_A 95 CKGSIYLVFDFCEH-DLAGLLSNVLV--KFTLSEIKRVM 130 (351)
T ss_dssp --CEEEEEEECCSE-EHHHHHHCTTS--CCCHHHHHHHH
T ss_pred CCceEEEEEeccCC-CHHHHHhhccC--CCCHHHHHHHH
Confidence 3468999999985 78888765433 46777666554
No 343
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=99.22 E-value=1.8e-12 Score=131.70 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=82.5
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHH---HHHhhcCCCCcccEE-------EE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEV---NALTKIRHRNIVKFY-------GF 529 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei---~~l~~l~H~niv~l~-------~~ 529 (571)
.++|.+.+.||+|+||.||+|. ..+|+.||||++...........+.|.+|+ +.+++++|||||+++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 4568889999999999999999 467999999999755444444567899999 556677899999998 77
Q ss_pred EEeCCe-----------------eEEEEeccCCCChhhhhccCCC----ccCCCHHHHhhhc
Q 044615 530 CSHALH-----------------SFVVYEYLEMGSLAMNLSNDAA----AEQFCWTKRMNAI 570 (571)
Q Consensus 530 ~~~~~~-----------------~~lv~e~~~~G~L~~~l~~~~~----~~~l~w~~r~~ia 570 (571)
+.+.+. .|+||||+ +|+|.+++...+. ...++|..++.|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~ 212 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLT 212 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHH
Confidence 766542 78999999 6899999985321 1235566666554
No 344
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=3.2e-11 Score=120.89 Aligned_cols=104 Identities=22% Similarity=0.223 Sum_probs=78.0
Q ss_pred EEeCccC-cCcCCCChhhhCCCCCCEEEccc-CccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccC
Q 044615 222 QLTLNNN-ELSGQLSPELGSLIQLEYLDLSA-NTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSH 299 (571)
Q Consensus 222 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 299 (571)
.++++++ +++. +|. +..+++|+.|+|++ |.+++..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 7774 555 77788888888885 888777777788888888888888888877777777888888888888
Q ss_pred CcCCcccchhccCCCCCCEEEccCCcCcc
Q 044615 300 NIFREEIPSQICSMQSLEKLNLSHNNLSG 328 (571)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 328 (571)
|++++..+..+..++ |+.|+|.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888776655565555 7778888777763
No 345
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.21 E-value=6.1e-12 Score=137.02 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=87.4
Q ss_pred HccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCeeE
Q 044615 460 ATNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALHSF 537 (571)
Q Consensus 460 ~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~ 537 (571)
..++|++.+.||+|+||.||+|+ ..+++.||||++.+.........+.+.+|..++..+ +||+|+++++++.+.+.+|
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 45689999999999999999999 457899999998753221222346688999999987 7999999999999999999
Q ss_pred EEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 538 VVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+||||+++|+|.++++..+ .+++.....|+
T Consensus 419 lV~E~~~gg~L~~~l~~~~---~~~~~~~~~~~ 448 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQVG---RFKEPHAVFYA 448 (674)
T ss_dssp EEEECCCSCBHHHHHHHHS---SCCHHHHHHHH
T ss_pred EEEeCcCCCcHHHHHHhcC---CCCHHHHHHHH
Confidence 9999999999999998543 46666665543
No 346
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=99.21 E-value=7.9e-12 Score=121.09 Aligned_cols=103 Identities=25% Similarity=0.341 Sum_probs=82.2
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC-CeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA-LHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~-~~~~lv 539 (571)
.++|+..+.||+|+||.||+|.. .|+.||||.+.... ..+.+.+|++++++++||||+++++++.+. +..|+|
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv 93 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV 93 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC-------HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEE
T ss_pred hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh-----HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEE
Confidence 35689999999999999999987 48899999987532 246789999999999999999999997654 478999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+++|+|.+++.... ...+++.....++
T Consensus 94 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~ 123 (278)
T 1byg_A 94 TEYMAKGSLVDYLRSRG-RSVLGGDCLLKFS 123 (278)
T ss_dssp ECCCTTEEHHHHHHHHH-HHHCCHHHHHHHH
T ss_pred EecCCCCCHHHHHHhcc-cccCCHHHHHHHH
Confidence 99999999999997532 1235666555543
No 347
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=99.21 E-value=2e-11 Score=118.89 Aligned_cols=108 Identities=16% Similarity=0.233 Sum_probs=82.2
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|++.+.||+|+||.||+|. ..+++.||||++...... ....+.+.+|...++.++||||+++++++.+.+..|+|
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 84 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNS-QEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 84 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CH-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCc-HHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEE
Confidence 3568999999999999999999 568999999999754322 22233445555568889999999999999999999999
Q ss_pred EeccCCCChhhhhccC-CCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSND-AAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~-~~~~~l~w~~r~~ia 570 (571)
|||++ |+|.+++... .....++|.....|+
T Consensus 85 ~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~ 115 (290)
T 3fme_A 85 MELMD-TSLDKFYKQVIDKGQTIPEDILGKIA 115 (290)
T ss_dssp EECCS-EEHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred Eehhc-cchHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99998 5888887642 122357787776654
No 348
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=99.21 E-value=2e-11 Score=131.96 Aligned_cols=98 Identities=23% Similarity=0.371 Sum_probs=79.8
Q ss_pred CeeeccCcceEEEEEc---CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEEeccC
Q 044615 468 HCIGNGGQGSVYKAKL---PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVYEYLE 544 (571)
Q Consensus 468 ~~lg~G~~g~V~~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 544 (571)
+.||+|+||.||+|.+ ..++.||||+++... ......++|.+|++++++++|||||++++++.. +..++|||||+
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~-~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~ 452 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA-NDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAE 452 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGG-GCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEecccc-CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccC
Confidence 4799999999999963 356789999997542 222346789999999999999999999999964 55789999999
Q ss_pred CCChhhhhccCCCccCCCHHHHhhhc
Q 044615 545 MGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 545 ~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+|+|.++++.. ..++|..+..|+
T Consensus 453 ~g~L~~~l~~~---~~l~~~~~~~i~ 475 (635)
T 4fl3_A 453 LGPLNKYLQQN---RHVKDKNIIELV 475 (635)
T ss_dssp TEEHHHHHHHC---TTCCHHHHHHHH
T ss_pred CCCHHHHHhhC---CCCCHHHHHHHH
Confidence 99999999743 247787777664
No 349
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=99.20 E-value=1.5e-11 Score=124.15 Aligned_cols=103 Identities=18% Similarity=0.285 Sum_probs=77.4
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCC-----
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHAL----- 534 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~----- 534 (571)
.+.|+..+.||+|+||.||+|. ..+|+.||||++..... .....+++.+|++++++++||||+++++++....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 102 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ-SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF 102 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTS-SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCcccc-CHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence 4569999999999999999999 46899999999965432 3344677999999999999999999999997653
Q ss_pred -eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 535 -HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 535 -~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
..|+||||+ +++|.++++.. .+++.....+
T Consensus 103 ~~~~lv~e~~-~~~L~~~~~~~----~l~~~~~~~~ 133 (367)
T 1cm8_A 103 TDFYLVMPFM-GTDLGKLMKHE----KLGEDRIQFL 133 (367)
T ss_dssp CCCEEEEECC-SEEHHHHHHHC----CCCHHHHHHH
T ss_pred ceEEEEEecC-CCCHHHHHhcC----CCCHHHHHHH
Confidence 469999999 78999999753 3555544443
No 350
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=99.20 E-value=5.1e-11 Score=116.56 Aligned_cols=101 Identities=21% Similarity=0.248 Sum_probs=85.8
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCeeEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv 539 (571)
++|++.+.||+|+||.||+|. ..+++.||||++..... .+.+.+|++++.++ +|||++++++++.+....++|
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv 84 (298)
T 1csn_A 10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD-----APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLV 84 (298)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT-----SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc-----cHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEE
Confidence 469999999999999999999 56899999999865432 23577899999999 899999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+ +|+|.+++...+. .+++..+..|+
T Consensus 85 ~e~~-~~~L~~~l~~~~~--~~~~~~~~~i~ 112 (298)
T 1csn_A 85 IDLL-GPSLEDLLDLCGR--KFSVKTVAMAA 112 (298)
T ss_dssp EECC-CCBHHHHHHHTTT--CCCHHHHHHHH
T ss_pred EEec-CCCHHHHHHHhcc--CCCHHHHHHHH
Confidence 9999 9999999985432 47787777664
No 351
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=99.20 E-value=9.6e-12 Score=123.50 Aligned_cols=104 Identities=23% Similarity=0.320 Sum_probs=80.2
Q ss_pred cCCCccCeeeccCcceEEEEEc-CCCCE----EEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCee
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-PTGEI----VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS 536 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~----vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 536 (571)
++|+..+.||+|+||.||+|.. .+++. ||+|.+...... ...+.+.+|+.++++++||||+++++++. .+..
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~ 89 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGR--QSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSL 89 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSC--SCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccH--HHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCcc
Confidence 4688999999999999999984 45554 788887543211 12345778999999999999999999986 5568
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
++||||+++|+|.+++..... .++|..+..|+
T Consensus 90 ~~v~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~ 121 (325)
T 3kex_A 90 QLVTQYLPLGSLLDHVRQHRG--ALGPQLLLNWG 121 (325)
T ss_dssp EEEEECCTTCBSHHHHHSSGG--GSCTTHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHccc--cCCHHHHHHHH
Confidence 899999999999999985432 45666555543
No 352
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=99.19 E-value=2.5e-11 Score=123.39 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=78.4
Q ss_pred HHccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC----
Q 044615 459 RATNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA---- 533 (571)
Q Consensus 459 ~~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~---- 533 (571)
...++|+..+.||+|+||.||+|. ..+|+.||||++...... ..+|+++++.++|||||++++++...
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~-------~~~E~~il~~l~hpnIv~l~~~~~~~~~~~ 76 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRY-------KNRELDIMKVLDHVNIIKLVDYFYTTGDEE 76 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTS-------CCHHHHHHTTCCCTTBCCEEEEEEEC----
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcch-------HHHHHHHHHHcCCCCccchhheeeecCccc
Confidence 345689999999999999999998 568999999998654322 23799999999999999999998543
Q ss_pred ----------------------------------CeeEEEEeccCCCChhhhhccC-CCccCCCHHHHhhhc
Q 044615 534 ----------------------------------LHSFVVYEYLEMGSLAMNLSND-AAAEQFCWTKRMNAI 570 (571)
Q Consensus 534 ----------------------------------~~~~lv~e~~~~G~L~~~l~~~-~~~~~l~w~~r~~ia 570 (571)
...++||||++ |+|.+.+... .....+++.....|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~ 147 (383)
T 3eb0_A 77 PKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYI 147 (383)
T ss_dssp ---------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 34889999999 5888777631 122356666655543
No 353
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=99.19 E-value=2.7e-11 Score=121.06 Aligned_cols=99 Identities=26% Similarity=0.356 Sum_probs=83.5
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhh--cCCCCcccEEEEEEeCC----
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTK--IRHRNIVKFYGFCSHAL---- 534 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~--l~H~niv~l~~~~~~~~---- 534 (571)
.++|.+.+.||+|+||.||+|+. +++.||||++... ..+.+.+|++++.. ++||||+++++++....
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~------~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~ 113 (342)
T 1b6c_B 41 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR------EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWT 113 (342)
T ss_dssp HHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG------GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCC
T ss_pred cccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch------hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccc
Confidence 45699999999999999999987 5889999998632 24567889998887 79999999999998876
Q ss_pred eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 535 HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
..|+||||+++|+|.+++.+. .++|..+..|+
T Consensus 114 ~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~ 145 (342)
T 1b6c_B 114 QLWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLA 145 (342)
T ss_dssp CEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHH
T ss_pred eeEEEEeecCCCcHHHHHhcc----CccHHHHHHHH
Confidence 789999999999999999743 47777776654
No 354
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=99.19 E-value=3.6e-11 Score=122.51 Aligned_cols=104 Identities=23% Similarity=0.375 Sum_probs=76.4
Q ss_pred HccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcC-CCCcccEEEEEEeCC--e
Q 044615 460 ATNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR-HRNIVKFYGFCSHAL--H 535 (571)
Q Consensus 460 ~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~--~ 535 (571)
..++|++.+.||+|+||.||+|. ..+|+.||||++.... ......+.+.+|+.++.++. |||||++++++...+ .
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~-~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~ 85 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAF-QNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD 85 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC---CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccc-cChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence 35679999999999999999998 5689999999997543 23345677889999999997 999999999998654 6
Q ss_pred eEEEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 536 SFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 536 ~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
.|+|||||+ |+|.++++.. .+++..+..+
T Consensus 86 ~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~i 114 (388)
T 3oz6_A 86 VYLVFDYME-TDLHAVIRAN----ILEPVHKQYV 114 (388)
T ss_dssp EEEEEECCS-EEHHHHHHHT----CCCHHHHHHH
T ss_pred EEEEecccC-cCHHHHHHcC----CCCHHHHHHH
Confidence 899999998 5999998753 3555555443
No 355
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=99.19 E-value=4e-11 Score=119.79 Aligned_cols=107 Identities=18% Similarity=0.283 Sum_probs=84.9
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHH-HhhcCCCCcccEEEEEEeCCeeEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNA-LTKIRHRNIVKFYGFCSHALHSFV 538 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~-l~~l~H~niv~l~~~~~~~~~~~l 538 (571)
.++|+..+.||+|+||.||+|. ..+|+.||||++...... ....++..|+.+ ++.++||||+++++++.+.+..|+
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~l 127 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNS--QEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWI 127 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCC--HHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEE
T ss_pred hhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCc--HHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEE
Confidence 4578899999999999999999 568999999999765332 234556666665 788999999999999999999999
Q ss_pred EEeccCCCChhhhhccC-CCccCCCHHHHhhhc
Q 044615 539 VYEYLEMGSLAMNLSND-AAAEQFCWTKRMNAI 570 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~-~~~~~l~w~~r~~ia 570 (571)
||||+++ +|.+++... .....++|.....|+
T Consensus 128 v~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~ 159 (340)
T 3an0_A 128 CMELMDT-SLDKFYKQVIDKGQTIPEDILGKIA 159 (340)
T ss_dssp EECCCSE-EHHHHHHHHHHTSCCCCHHHHHHHH
T ss_pred EHHHhhC-cHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9999985 999888642 122357887776654
No 356
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.19 E-value=3.9e-11 Score=118.07 Aligned_cols=108 Identities=22% Similarity=0.356 Sum_probs=82.0
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCC--chHhHHHHHHHHHHHhhc---CCCCcccEEEEEEeCC
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPD--EMACQQEFLNEVNALTKI---RHRNIVKFYGFCSHAL 534 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~--~~~~~~~~~~Ei~~l~~l---~H~niv~l~~~~~~~~ 534 (571)
.++|++.+.||+|+||.||+|+ ..+++.||||++...... .......+.+|+++++++ +||||+++++++....
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~ 87 (308)
T 3g33_A 8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSR 87 (308)
T ss_dssp --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECC
T ss_pred ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccC
Confidence 5679999999999999999999 468999999998643211 111134567788777666 4999999999998765
Q ss_pred -----eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 535 -----HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 535 -----~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
..++||||++ |+|.+++..... ..+++.....|+
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~~~~~~~-~~~~~~~~~~i~ 126 (308)
T 3g33_A 88 TDREIKVTLVFEHVD-QDLRTYLDKAPP-PGLPAETIKDLM 126 (308)
T ss_dssp SSSEEEEEEEEECCC-CBHHHHHHTCCT-TCSCHHHHHHHH
T ss_pred CCCceeEEEEehhhh-cCHHHHHhhccC-CCCCHHHHHHHH
Confidence 5799999998 599999986433 347887776654
No 357
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=99.19 E-value=2.7e-11 Score=119.77 Aligned_cols=100 Identities=24% Similarity=0.332 Sum_probs=76.8
Q ss_pred cCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEE---------
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCS--------- 531 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~--------- 531 (571)
+.|...+.||+|+||.||+|.. .+++.||||++... .....+.+.+|++++++++||||+++++++.
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 87 (320)
T 2i6l_A 11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT---DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDD 87 (320)
T ss_dssp TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC---SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC-
T ss_pred CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC---ChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccc
Confidence 5689999999999999999994 46999999998754 2344678999999999999999999999883
Q ss_pred -----eCCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 532 -----HALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 532 -----~~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
+....|+||||++ |+|.+++.+. .+++.....+
T Consensus 88 ~~~~~~~~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~ 125 (320)
T 2i6l_A 88 VGSLTELNSVYIVQEYME-TDLANVLEQG----PLLEEHARLF 125 (320)
T ss_dssp ---CCSCSEEEEEEECCS-EEHHHHHTTC----CCCHHHHHHH
T ss_pred cccccccCceeEEeeccC-CCHHHHhhcC----CccHHHHHHH
Confidence 3467899999998 6999999643 3556555544
No 358
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.19 E-value=4.9e-11 Score=129.49 Aligned_cols=105 Identities=20% Similarity=0.302 Sum_probs=85.0
Q ss_pred ccCCCccCeeeccCcceEEEEEcC----CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCee
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLP----TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS 536 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 536 (571)
.++|++.+.||+|+||.||+|... .+..||||.+.... .....+.|.+|+.++++++|||||++++++. .+..
T Consensus 389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~ 465 (656)
T 2j0j_A 389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCT--SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV 465 (656)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTT--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSC
T ss_pred cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCce
Confidence 356888899999999999999853 24579999986532 2344578999999999999999999999984 5668
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|+||||+++|+|.++++... ..++|..++.|+
T Consensus 466 ~lv~E~~~~g~L~~~l~~~~--~~l~~~~~~~i~ 497 (656)
T 2j0j_A 466 WIIMELCTLGELRSFLQVRK--FSLDLASLILYA 497 (656)
T ss_dssp EEEEECCTTCBHHHHHHHTT--TTCCHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHhcc--CCCCHHHHHHHH
Confidence 99999999999999997543 247787776654
No 359
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.19 E-value=1.9e-11 Score=121.89 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=79.3
Q ss_pred cCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCC-----chHhHHHHHHHHHHHhhcC---------CCCcccEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPD-----EMACQQEFLNEVNALTKIR---------HRNIVKFY 527 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~-----~~~~~~~~~~Ei~~l~~l~---------H~niv~l~ 527 (571)
++|++.+.||+|+||+||+|+. +|+.||||++...... .....+.+.+|++++++++ |||||++.
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~ 98 (336)
T 2vuw_A 20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN 98 (336)
T ss_dssp HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred ccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence 4588999999999999999987 6899999999765321 1223477889999998885 88888888
Q ss_pred EEEE------------------------------eCCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 528 GFCS------------------------------HALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 528 ~~~~------------------------------~~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
+.+. +.+..|+|||||++|++.+.+.+. .+++.....|
T Consensus 99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~----~~~~~~~~~i 166 (336)
T 2vuw_A 99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTK----LSSLATAKSI 166 (336)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTT----CCCHHHHHHH
T ss_pred ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhc----CCCHHHHHHH
Confidence 8753 267899999999999887777532 3555555444
No 360
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=99.18 E-value=5.1e-11 Score=120.56 Aligned_cols=102 Identities=18% Similarity=0.285 Sum_probs=82.7
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCC-----
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHAL----- 534 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~----- 534 (571)
.++|+..+.||+|+||.||+|. ..+++.||||++..... .....+.+.+|+.+++.++||||+++++++....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 102 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF 102 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTS-SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccC-ChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccc
Confidence 3579999999999999999998 55789999999975432 3344677899999999999999999999997664
Q ss_pred -eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 535 -HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 535 -~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
..|+||||+++ +|.+++.. .+++.....|
T Consensus 103 ~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~i 132 (371)
T 2xrw_A 103 QDVYIVMELMDA-NLCQVIQM-----ELDHERMSYL 132 (371)
T ss_dssp CEEEEEEECCSE-EHHHHHHS-----CCCHHHHHHH
T ss_pred cceEEEEEcCCC-CHHHHHhh-----ccCHHHHHHH
Confidence 78999999985 78888863 2555555443
No 361
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=122.92 Aligned_cols=105 Identities=21% Similarity=0.292 Sum_probs=84.9
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcC-CCCcccEEEEEEe-------
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR-HRNIVKFYGFCSH------- 532 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~------- 532 (571)
.+|++.+.||+|+||.||+|+ ..+++.||||++... .....+.+.+|+.++.++. ||||+++++++..
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~ 104 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN---EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDT 104 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES---SHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTT
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC---chHHHHHHHHHHHHHHHhccCCChhhcccccccccccccc
Confidence 468999999999999999999 558999999998543 2344567899999999996 9999999999953
Q ss_pred -CCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 533 -ALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 533 -~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
....++||||++ |+|.+++........++|.....|+
T Consensus 105 ~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~ 142 (337)
T 3ll6_A 105 GQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIF 142 (337)
T ss_dssp SSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHH
T ss_pred CCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHH
Confidence 345799999996 7999999753333468888877764
No 362
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=99.18 E-value=3.5e-11 Score=119.96 Aligned_cols=99 Identities=24% Similarity=0.353 Sum_probs=79.7
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhh--cCCCCcccEEEEEEeC----C
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTK--IRHRNIVKFYGFCSHA----L 534 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~--l~H~niv~l~~~~~~~----~ 534 (571)
.++|++.+.||+|+||.||+|+.. ++.||||++... ....+.+|.+++.. ++||||+++++++... .
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 108 (337)
T 3mdy_A 36 AKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT------EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWT 108 (337)
T ss_dssp HHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG------GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGC
T ss_pred ccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc------ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCC
Confidence 357999999999999999999874 889999998532 12445566666554 4999999999999887 7
Q ss_pred eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 535 HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
..|+||||+++|+|.++++.. .++|.....|+
T Consensus 109 ~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~ 140 (337)
T 3mdy_A 109 QLYLITDYHENGSLYDYLKST----TLDAKSMLKLA 140 (337)
T ss_dssp EEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHH
T ss_pred ceEEEEeccCCCcHHHHhhcc----CCCHHHHHHHH
Confidence 899999999999999999743 46777666654
No 363
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=99.18 E-value=2.6e-11 Score=126.31 Aligned_cols=102 Identities=18% Similarity=0.296 Sum_probs=81.1
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC------
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA------ 533 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------ 533 (571)
.++|+..+.||+|+||.||+|. ..+++.||||++.... ......+++.+|+++++.++|||||++++++...
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 139 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPF-QNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF 139 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGG-GSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccc-cChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence 4679999999999999999998 5679999999997542 2234467789999999999999999999999655
Q ss_pred CeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 534 LHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 534 ~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
...|+|||||++ ++.+.+.. .+++.+...|
T Consensus 140 ~~~~lv~E~~~~-~l~~~~~~-----~l~~~~~~~~ 169 (464)
T 3ttj_A 140 QDVYLVMELMDA-NLCQVIQM-----ELDHERMSYL 169 (464)
T ss_dssp CEEEEEEECCSE-EHHHHHTS-----CCCHHHHHHH
T ss_pred CeEEEEEeCCCC-CHHHHHhh-----cCCHHHHHHH
Confidence 357999999986 46666653 2556555443
No 364
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=99.17 E-value=5.4e-11 Score=117.34 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=87.9
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcC--CCCcccEEEEEEeCCeeEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR--HRNIVKFYGFCSHALHSFV 538 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~--H~niv~l~~~~~~~~~~~l 538 (571)
.++|++.+.||+|+||.||+|...+++.||||++...... ....+.+.+|++++.+++ ||||+++++++.+.+..|+
T Consensus 27 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 105 (313)
T 3cek_A 27 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEAD-NQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 105 (313)
T ss_dssp TEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCC-HHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEE
T ss_pred cceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEecccccc-ccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEE
Confidence 4569999999999999999999778999999999765433 345678999999999997 5999999999999999999
Q ss_pred EEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 539 VYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||| +.+|+|.+++.... .+++..+..|+
T Consensus 106 v~e-~~~~~L~~~l~~~~---~~~~~~~~~i~ 133 (313)
T 3cek_A 106 VME-CGNIDLNSWLKKKK---SIDPWERKSYW 133 (313)
T ss_dssp EEC-CCSEEHHHHHHHCS---SCCHHHHHHHH
T ss_pred EEe-cCCCcHHHHHHhcC---CCCHHHHHHHH
Confidence 999 66889999998543 46777666554
No 365
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=99.17 E-value=5e-11 Score=118.42 Aligned_cols=104 Identities=19% Similarity=0.398 Sum_probs=82.6
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCE----EEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCee
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEI----VDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS 536 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~----vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 536 (571)
++|++.+.||+|+||.||+|. ..+++. ||+|.+..... ....+.+.+|+.++++++||||+++++++.+.. .
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~ 91 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS--PKANKEILDEAYVMASVDNPHVCRLLGICLTST-V 91 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSS--CCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-E
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccC--HHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-c
Confidence 569999999999999999998 445554 57777754322 233578999999999999999999999998765 7
Q ss_pred EEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 537 FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
++||||+++|+|.+++..... .+++.....|+
T Consensus 92 ~~v~~~~~~g~L~~~l~~~~~--~~~~~~~~~i~ 123 (327)
T 3lzb_A 92 QLITQLMPFGCLLDYVREHKD--NIGSQYLLNWC 123 (327)
T ss_dssp EEEECCCSSCBHHHHHHHTTT--CCCHHHHHHHH
T ss_pred eEEEEecCCCcHHHHHHhcCC--CCCHHHHHHHH
Confidence 899999999999999986433 46676666553
No 366
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.16 E-value=4.2e-09 Score=107.32 Aligned_cols=286 Identities=10% Similarity=0.061 Sum_probs=160.7
Q ss_pred CCCEEEccCCc--cc---cCCCCccceeecccccccCCCCCCCccc-cccccCCCCCCEEecccCcCcccccccccCCCC
Q 044615 49 QARDTSISFDE--LH---EKLLTFEATAHFSVLAFTGQDWPLYSSI-PDEIGNMKSLSDLQLSENILNGSIPLALGNLTN 122 (571)
Q Consensus 49 ~l~~l~l~~n~--l~---~~~l~~l~~l~l~~n~l~~~~~~~~~~~-p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 122 (571)
.|+...+..+- +. |.++.+|+.+.+..+.-+. +..+ ..+|.++.+|+.+.+..+ ++.....+|..+.+
T Consensus 65 ~L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~-----l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~ 138 (394)
T 4gt6_A 65 VLTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSC-----VKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEE 138 (394)
T ss_dssp CCCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCC-----CCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTT
T ss_pred cCEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCe-----eeEechhhchhcccceeeccCCc-cceehhhhhhhhcc
Confidence 46666665431 11 6666677776666543221 1122 234556666666666543 34344556666667
Q ss_pred CCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCChhhhhccCCCcEEEcc
Q 044615 123 LVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLS 202 (571)
Q Consensus 123 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~ 202 (571)
|+.+.+..+ +..+....|..+..|+.+.+..+ +......+|.. .+|+.+.+..+-.. .....|..... +......
T Consensus 139 L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~-l~~~~~~ 213 (394)
T 4gt6_A 139 LDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFA-LSTITSD 213 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTT-CCEEEEC
T ss_pred cccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccc-cceeccc
Confidence 777776543 23344555666666666666543 23233334432 45666666443221 22233333332 4444443
Q ss_pred CCcccccCCc-------------cccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCCCC
Q 044615 203 SNHIVGEIPL-------------GHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVKLH 269 (571)
Q Consensus 203 ~n~~~~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 269 (571)
.+........ .+.....+..+.+.. .+.......|.++..|+.+.+..+.. .....+|.++++|+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~ 291 (394)
T 4gt6_A 214 SESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQ 291 (394)
T ss_dssp CSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCC
T ss_pred ccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc-eecCcccccccccc
Confidence 3322110000 001112233333322 22223345677788888888866543 34556778888888
Q ss_pred EEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCc
Q 044615 270 YLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNA 349 (571)
Q Consensus 270 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~ 349 (571)
.+.+. +.++......|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+++.+|.
T Consensus 292 ~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 292 DIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred cccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 88886 4455555667888888888888754 55556677888888888888644 666667788888888888888765
Q ss_pred C
Q 044615 350 L 350 (571)
Q Consensus 350 l 350 (571)
.
T Consensus 369 ~ 369 (394)
T 4gt6_A 369 S 369 (394)
T ss_dssp H
T ss_pred e
Confidence 4
No 367
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=99.16 E-value=1.7e-11 Score=120.97 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=79.8
Q ss_pred HHccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCch---HhHHHHHHHHHHHhhc----CCCCcccEEEEE
Q 044615 459 RATNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEM---ACQQEFLNEVNALTKI----RHRNIVKFYGFC 530 (571)
Q Consensus 459 ~~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~---~~~~~~~~Ei~~l~~l----~H~niv~l~~~~ 530 (571)
...++|++.+.||+|+||.||+|. ..+++.||||++........ .....+.+|+.++.++ +||||+++++++
T Consensus 28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~ 107 (312)
T 2iwi_A 28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF 107 (312)
T ss_dssp -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence 345679999999999999999998 46889999999976543221 1233467899999988 899999999999
Q ss_pred EeCCeeEEEEec-cCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 531 SHALHSFVVYEY-LEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 531 ~~~~~~~lv~e~-~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
.+.+..++|||| +++|+|.+++...+ .++|..+..|+
T Consensus 108 ~~~~~~~~v~e~~~~~~~L~~~l~~~~---~~~~~~~~~~~ 145 (312)
T 2iwi_A 108 ETQEGFMLVLERPLPAQDLFDYITEKG---PLGEGPSRCFF 145 (312)
T ss_dssp -----CEEEEECCSSEEEHHHHHHHHC---SCCHHHHHHHH
T ss_pred ecCCeEEEEEEecCCCCCHHHHHHhcC---CCCHHHHHHHH
Confidence 999999999999 89999999998543 47777776654
No 368
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=99.16 E-value=3.1e-11 Score=121.81 Aligned_cols=104 Identities=20% Similarity=0.289 Sum_probs=76.9
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC------
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA------ 533 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------ 533 (571)
.+.|+..+.||+|+||.||+|. ..+|+.||||++.... ......+.+.+|++++++++||||+++++++...
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 106 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF-QSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF 106 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccc-cCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence 3679999999999999999998 5689999999997543 2334567889999999999999999999999754
Q ss_pred CeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 534 LHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 534 ~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
...|+||||+ +++|.++++.. .+++.....++
T Consensus 107 ~~~~lv~e~~-~~~L~~~~~~~----~l~~~~~~~i~ 138 (367)
T 2fst_X 107 NDVYLVTHLM-GADLNNIVKCQ----KLTDDHVQFLI 138 (367)
T ss_dssp CCCEEEEECC-CEECC-----C----CCCHHHHHHHH
T ss_pred CeEEEEeccc-CCCHHHHHhcC----CCCHHHHHHHH
Confidence 5679999999 68999988742 46666655543
No 369
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=99.15 E-value=5.4e-11 Score=120.39 Aligned_cols=103 Identities=20% Similarity=0.339 Sum_probs=83.8
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCee---
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHS--- 536 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~--- 536 (571)
.+.|...+.||+|+||.||+|. ..+|+.||||++..... .....+.+.+|+.++++++||||+++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 119 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ-SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 119 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEeccccc-chhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence 3579999999999999999998 55899999999976433 234467899999999999999999999999877654
Q ss_pred ---EEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 537 ---FVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 537 ---~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|+||||++ |+|.+++.. .+++.....|+
T Consensus 120 ~~~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~ 150 (371)
T 4exu_A 120 YDFYLVMPFMQ-TDLQKIMGM-----EFSEEKIQYLV 150 (371)
T ss_dssp CCCEEEEECCC-EEHHHHTTS-----CCCHHHHHHHH
T ss_pred eeEEEEEcccc-ccHHHHhhc-----CCCHHHHHHHH
Confidence 99999998 689888742 26666665543
No 370
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=99.15 E-value=7e-11 Score=118.65 Aligned_cols=103 Identities=23% Similarity=0.349 Sum_probs=84.0
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC-----C
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA-----L 534 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~-----~ 534 (571)
.++|++.+.||+|+||.||+|. ..+|+.||||++.... .......+.+|++++++++||||+++++++... .
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 87 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFD--KPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFN 87 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCS--SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCC
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccc--cchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccc
Confidence 4579999999999999999999 4579999999996432 334456788999999999999999999998764 6
Q ss_pred eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 535 HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
..|+||||++ |+|.+++... .+++.....++
T Consensus 88 ~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~~ 118 (353)
T 2b9h_A 88 EVYIIQELMQ-TDLHRVISTQ----MLSDDHIQYFI 118 (353)
T ss_dssp CEEEEECCCS-EEHHHHHHHC----CCCHHHHHHHH
T ss_pred eEEEEEeccC-ccHHHHHhhc----CCCHHHHHHHH
Confidence 7899999998 5999998753 46666665543
No 371
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=99.14 E-value=9.2e-12 Score=123.19 Aligned_cols=105 Identities=22% Similarity=0.290 Sum_probs=85.2
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 540 (571)
.++|++.+.||+|+||.||+|.... .+|+|.+....... ...+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 32 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~ 108 (319)
T 2y4i_B 32 FEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNE-DQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIIT 108 (319)
T ss_dssp CSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCC-CCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEEC
T ss_pred HHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCH-HHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEe
Confidence 4679999999999999999998643 49999997543222 22355789999999999999999999999999999999
Q ss_pred eccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 541 EYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||+++|+|.+++...+ ..+++..+..|+
T Consensus 109 e~~~~~~L~~~l~~~~--~~~~~~~~~~i~ 136 (319)
T 2y4i_B 109 SLCKGRTLYSVVRDAK--IVLDVNKTRQIA 136 (319)
T ss_dssp BCCCSEEHHHHTTSSC--CCCCSHHHHHHH
T ss_pred ecccCCcHHHHHHhcC--CCCCHHHHHHHH
Confidence 9999999999997643 246666665553
No 372
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=99.14 E-value=3e-11 Score=120.99 Aligned_cols=105 Identities=20% Similarity=0.146 Sum_probs=78.8
Q ss_pred cCCCccCeeeccCcceEEEEEcC----CCCEEEEEEccCCCCCchH--------hHHHHHHHHHHHhhcCCCCcccEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLP----TGEIVDVKKFHSPLPDEMA--------CQQEFLNEVNALTKIRHRNIVKFYGF 529 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~~~~--------~~~~~~~Ei~~l~~l~H~niv~l~~~ 529 (571)
++|.+.+.||+|+||.||+|... ++..+|||.+......... ..+.+.+|+..++.++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 56999999999999999999953 6788999999765322111 12347788999999999999999999
Q ss_pred EEe----CCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 530 CSH----ALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 530 ~~~----~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+.. ....|+||||+ +|+|.+++...+ .++|..+..|+
T Consensus 117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~---~~~~~~~~~i~ 157 (345)
T 2v62_A 117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNG---TFKKSTVLQLG 157 (345)
T ss_dssp EEEESSSCEEEEEEEECE-EEEHHHHCBGGG---BCCHHHHHHHH
T ss_pred cccccCCCcEEEEEEecc-CCCHHHHHHhcC---CCCHHHHHHHH
Confidence 988 67899999999 999999998543 57888777664
No 373
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=99.14 E-value=7.5e-11 Score=118.75 Aligned_cols=109 Identities=22% Similarity=0.143 Sum_probs=70.5
Q ss_pred HHHHHHccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC
Q 044615 455 EEIIRATNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA 533 (571)
Q Consensus 455 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~ 533 (571)
++.....++|++.+.||+|+||.||+|.. .+++.||||++...... ...+.+|++.++.++|||||++++++...
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~~~~~l~~l~h~niv~~~~~~~~~ 91 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRF----RNRELQIMQDLAVLHHPNIVQLQSYFYTL 91 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTC----CCHHHHHHHHHHHHCCTTBCCEEEEEEEE
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccc----cHHHHHHHHHHHhcCCCCcccHHHhhhcc
Confidence 44566778899999999999999999994 57999999998654322 23566788889999999999999999764
Q ss_pred Ce-------eEEEEeccCCCChhhhhcc-CCCccCCCHHHHhh
Q 044615 534 LH-------SFVVYEYLEMGSLAMNLSN-DAAAEQFCWTKRMN 568 (571)
Q Consensus 534 ~~-------~~lv~e~~~~G~L~~~l~~-~~~~~~l~w~~r~~ 568 (571)
.. .++||||+++ +|.+.+.. ......+++.....
T Consensus 92 ~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~ 133 (360)
T 3e3p_A 92 GERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKV 133 (360)
T ss_dssp CSSCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHH
T ss_pred ccccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHH
Confidence 43 7899999996 55544432 11222455554443
No 374
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.14 E-value=4.6e-09 Score=107.02 Aligned_cols=271 Identities=11% Similarity=0.084 Sum_probs=168.6
Q ss_pred ccccCCCCCCEEecccCc---CcccccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccC
Q 044615 91 DEIGNMKSLSDLQLSENI---LNGSIPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGN 167 (571)
Q Consensus 91 ~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 167 (571)
.+|.++.+|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++.+....|..+.+|+.+.+..+ +.......|..
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~ 158 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSY 158 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceec
Confidence 456677777777776653 54445566777777777666544 34455556777777777777543 33344456677
Q ss_pred CCCCCEEEccCCCCCccCChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChh----------
Q 044615 168 MNSLSILDLSSNKLNGSIPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPE---------- 237 (571)
Q Consensus 168 l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------- 237 (571)
+.+|+.+.+..+ +. .+....+.... |+.+.+..+.. ......+..+.++.......+.........
T Consensus 159 c~~L~~i~~~~~-~~-~I~~~aF~~~~-l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (394)
T 4gt6_A 159 CYSLHTVTLPDS-VT-AIEERAFTGTA-LTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYA 234 (394)
T ss_dssp CTTCCEEECCTT-CC-EECTTTTTTCC-CSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEE
T ss_pred ccccccccccce-ee-Eeccccccccc-eeEEEECCccc-ccccchhhhccccceecccccccccccceeeccccccccc
Confidence 777777777554 33 22332223333 77777654432 234455666666666655444332111000
Q ss_pred ---hhCCCCCCEEEcccCccccccchhhccCCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCC
Q 044615 238 ---LGSLIQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQ 314 (571)
Q Consensus 238 ---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 314 (571)
+.....+..+.+.. .+......+|.++.+|+.+.+.++... .....|.+++.|+.+.+. +.+.......|.++.
T Consensus 235 ~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~ 311 (394)
T 4gt6_A 235 LIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCI 311 (394)
T ss_dssp EEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCT
T ss_pred ccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCC
Confidence 01112233333322 233344567889999999999876543 556788899999999996 456666777899999
Q ss_pred CCCEEEccCCcCccccccccccCCCCCEEECcCCcCcccCCC-CCccCCCCcccccCCc
Q 044615 315 SLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQGLIPN-STAFRDAPMLALQGNK 372 (571)
Q Consensus 315 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~~~~~~l~l~~n~ 372 (571)
+|+.++|..+ ++.+...+|.++.+|+.+.+..+ ++..... .....++..+.+.++.
T Consensus 312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 9999999764 77677889999999999999754 4433222 1233556777777664
No 375
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=99.14 E-value=7.7e-11 Score=118.93 Aligned_cols=103 Identities=20% Similarity=0.237 Sum_probs=84.0
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC-----C
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA-----L 534 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~-----~ 534 (571)
.+.|+..+.||+|+||.||+|. ..+++.||||++.... .....+.+.+|++++++++||||+++++++... .
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 103 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFE--HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK 103 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTT--CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEecccc--CcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccc
Confidence 4579999999999999999998 5578899999997532 234457799999999999999999999999765 3
Q ss_pred eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 535 HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
..|+||||++ |+|.+++... .+++.....|+
T Consensus 104 ~~~iv~e~~~-~~L~~~l~~~----~~~~~~~~~i~ 134 (364)
T 3qyz_A 104 DVYIVQDLME-TDLYKLLKTQ----HLSNDHICYFL 134 (364)
T ss_dssp CEEEEEECCS-EEHHHHHHHC----CCCHHHHHHHH
T ss_pred eEEEEEcccC-cCHHHHHHhC----CCCHHHHHHHH
Confidence 6899999998 5999998743 36666665543
No 376
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=99.14 E-value=1.5e-10 Score=114.96 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=82.3
Q ss_pred ccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHH-HHhhcCCCCcccEEEEEEeCCeeEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVN-ALTKIRHRNIVKFYGFCSHALHSFV 538 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~-~l~~l~H~niv~l~~~~~~~~~~~l 538 (571)
.++|+..+.||+|+||.||+|.. .+|+.||||++..... .....++.+|+. +++.++||||+++++++.+.+..|+
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~l 98 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVD--EKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWI 98 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCC--HHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccC--chHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEE
Confidence 35789999999999999999994 5899999999975432 233455667766 6788899999999999999999999
Q ss_pred EEeccCCCChhhhhccC--CCccCCCHHHHhhhc
Q 044615 539 VYEYLEMGSLAMNLSND--AAAEQFCWTKRMNAI 570 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~--~~~~~l~w~~r~~ia 570 (571)
||||+++ +|.+++... .....+++.....|+
T Consensus 99 v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~ 131 (327)
T 3aln_A 99 CMELMST-SFDKFYKYVYSVLDDVIPEEILGKIT 131 (327)
T ss_dssp EECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred EEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHH
Confidence 9999985 888777631 112356776665553
No 377
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=99.13 E-value=7.1e-11 Score=118.65 Aligned_cols=102 Identities=21% Similarity=0.337 Sum_probs=82.5
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCe-----
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALH----- 535 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~----- 535 (571)
++|...+.||+|+||.||+|. ..+|+.||||++..... .....+.+.+|+.++++++||||+++++++.....
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ-SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEeccccc-chHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 568999999999999999999 45799999999976432 33446778999999999999999999999987654
Q ss_pred -eEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 536 -SFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 536 -~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
.|+||||++ |+|.+++.. .+++.....|+
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~ 132 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL-----KFSEEKIQYLV 132 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS-----CCCHHHHHHHH
T ss_pred eEEEEecccc-CCHHHHhcC-----CCCHHHHHHHH
Confidence 499999998 589887752 26666655543
No 378
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=99.13 E-value=5e-11 Score=120.28 Aligned_cols=107 Identities=19% Similarity=0.236 Sum_probs=80.8
Q ss_pred ccCCCccCeeeccCcceEEEEEcCC------CCEEEEEEccCCCCCchHh--------HHHHHHHHHHHhhcCCCCcccE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPT------GEIVDVKKFHSPLPDEMAC--------QQEFLNEVNALTKIRHRNIVKF 526 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~~~~~~~--------~~~~~~Ei~~l~~l~H~niv~l 526 (571)
.++|++.+.||+|+||.||+|.... ++.||||++.......... ...+.+|+..+..++||||+++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 4579999999999999999998543 4789999987543211100 1224556667788899999999
Q ss_pred EEEEEeC----CeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 527 YGFCSHA----LHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 527 ~~~~~~~----~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
++++... ...|+||||+ +|+|.+++.... ..++|..++.|+
T Consensus 114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~--~~l~~~~~~~i~ 158 (364)
T 3op5_A 114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANA--KRFSRKTVLQLS 158 (364)
T ss_dssp EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTT--SCCCHHHHHHHH
T ss_pred EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhcc--CCCCHHHHHHHH
Confidence 9999775 4589999999 999999997543 358888887765
No 379
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=99.12 E-value=1.4e-10 Score=115.65 Aligned_cols=101 Identities=17% Similarity=0.224 Sum_probs=77.3
Q ss_pred ccCCCccC-eeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHH-HHHhhcCCCCcccEEEEEEe----C
Q 044615 461 TNNFDDGH-CIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEV-NALTKIRHRNIVKFYGFCSH----A 533 (571)
Q Consensus 461 ~~~~~~~~-~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei-~~l~~l~H~niv~l~~~~~~----~ 533 (571)
.++|.+.+ .||+|+||.||+|.. .+++.||||++... . ...+|+ ..+..++||||+++++++.. .
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~----~----~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~ 98 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS----P----KARQEVDHHWQASGGPHIVCILDVYENMHHGK 98 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS----H----HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc----H----HHHHHHHHHHHhcCCCChHHHHHHHhhccCCC
Confidence 45688854 699999999999994 57999999998642 1 122333 34567799999999999976 4
Q ss_pred CeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 534 LHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 534 ~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
...|+||||+++|+|.+++..... ..+++.+...|+
T Consensus 99 ~~~~lv~e~~~gg~L~~~l~~~~~-~~l~~~~~~~i~ 134 (336)
T 3fhr_A 99 RCLLIIMECMEGGELFSRIQERGD-QAFTEREAAEIM 134 (336)
T ss_dssp EEEEEEEECCTTEEHHHHHHTC-C-CCCBHHHHHHHH
T ss_pred ceEEEEEeccCCCCHHHHHHhcCC-CCCCHHHHHHHH
Confidence 558999999999999999986432 357777776654
No 380
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=99.11 E-value=2.8e-11 Score=121.54 Aligned_cols=99 Identities=18% Similarity=0.166 Sum_probs=80.8
Q ss_pred cCCCccCeeeccCcceEEEEEcC---------CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCccc-------
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLP---------TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVK------- 525 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~---------~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~------- 525 (571)
++|++.+.||+|+||.||+|+.. .++.||||.+... +.+.+|++++++++|||||+
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~--------~~~~~E~~~l~~l~h~niv~~~~~~~~ 113 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD--------GRLFNEQNFFQRAAKPLQVNKWKKLYS 113 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT--------STHHHHHHHHHHHCCHHHHHHHHHHTT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc--------chHHHHHHHHHHhcccchhhhhhhhcc
Confidence 57999999999999999999854 3789999998743 35779999999999999998
Q ss_pred --------EEEEEEe-CCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 526 --------FYGFCSH-ALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 526 --------l~~~~~~-~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+++++.. ....|+||||+ +|+|.+++.... ...++|..+..|+
T Consensus 114 ~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~l~~~~~~~i~ 165 (352)
T 2jii_A 114 TPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSP-KHVLSERSVLQVA 165 (352)
T ss_dssp CTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSG-GGCCCHHHHHHHH
T ss_pred CCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCC-cCCCCHHHHHHHH
Confidence 6778776 78899999999 999999998542 2468888887765
No 381
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=99.11 E-value=6.1e-11 Score=117.63 Aligned_cols=109 Identities=22% Similarity=0.376 Sum_probs=82.5
Q ss_pred HHccCCCccCeeeccCcceEEEEEc--CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc---CCCCcccEEEEEE--
Q 044615 459 RATNNFDDGHCIGNGGQGSVYKAKL--PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI---RHRNIVKFYGFCS-- 531 (571)
Q Consensus 459 ~~~~~~~~~~~lg~G~~g~V~~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l---~H~niv~l~~~~~-- 531 (571)
...++|++.+.||+|+||.||+|.. .+++.||+|++....... .....+.+|+.+++.+ +||||+++++++.
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~ 86 (326)
T 1blx_A 8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE-GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS 86 (326)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTT-SCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEE
T ss_pred CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccc-cCCchhhHHHHHHHhhhccCCCCeEeeeeeeeec
Confidence 3456899999999999999999985 468899999986432211 1123466787777665 8999999999997
Q ss_pred ---eCCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 532 ---HALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 532 ---~~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
.....++||||++ |+|.+++..... ..+++.....|+
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~~~ 126 (326)
T 1blx_A 87 RTDRETKLTLVFEHVD-QDLTTYLDKVPE-PGVPTETIKDMM 126 (326)
T ss_dssp ECSSEEEEEEEEECCS-CBHHHHHHHSCT-TCSCHHHHHHHH
T ss_pred ccCCCceEEEEEecCC-CCHHHHHHhccc-CCCCHHHHHHHH
Confidence 4567899999998 699999975432 247777766554
No 382
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=99.10 E-value=2.8e-10 Score=117.40 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=84.4
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc------CCCCcccEEEEEEeCC
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI------RHRNIVKFYGFCSHAL 534 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l------~H~niv~l~~~~~~~~ 534 (571)
..|++.+.||+|+||.||+|. ..+++.||||++... ....+.+.+|++++..+ +|+||+++++++....
T Consensus 97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~ 172 (429)
T 3kvw_A 97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE----KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRN 172 (429)
T ss_dssp TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC----HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETT
T ss_pred CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc----cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCC
Confidence 469999999999999999998 557899999999743 23346688888888776 6779999999999999
Q ss_pred eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 535 HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
..++||||+. |+|.+++..... ..++|.....|+
T Consensus 173 ~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~i~ 206 (429)
T 3kvw_A 173 HICMTFELLS-MNLYELIKKNKF-QGFSLPLVRKFA 206 (429)
T ss_dssp EEEEEECCCC-CBHHHHHHHTTT-CCCCHHHHHHHH
T ss_pred eEEEEEeccC-CCHHHHHHhccC-CCCCHHHHHHHH
Confidence 9999999997 699999975432 347887776654
No 383
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=99.09 E-value=1.9e-10 Score=114.58 Aligned_cols=99 Identities=31% Similarity=0.402 Sum_probs=75.7
Q ss_pred ccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHH--HhhcCCCCcccEEEEEEe-----C
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNA--LTKIRHRNIVKFYGFCSH-----A 533 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~--l~~l~H~niv~l~~~~~~-----~ 533 (571)
.++|++.+.||+|+||.||+|+. +++.||||++.... ...+..|.++ +..++||||+++++++.. .
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~------~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 84 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN------RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGR 84 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSC
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc------hhhHHHHHHHHHHHhccCcchhhheecccccccCCC
Confidence 35799999999999999999976 68899999986321 2344455544 556899999999987653 2
Q ss_pred CeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 534 LHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 534 ~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
...|+||||+++|+|.+++.... .+|..+.+|+
T Consensus 85 ~~~~lv~e~~~~g~L~~~l~~~~----~~~~~~~~i~ 117 (336)
T 3g2f_A 85 MEYLLVMEYYPNGSLXKYLSLHT----SDWVSSCRLA 117 (336)
T ss_dssp EEEEEEECCCTTCBHHHHHHHCC----BCHHHHHHHH
T ss_pred ceEEEEEecCCCCcHHHHHhhcc----cchhHHHHHH
Confidence 35789999999999999997543 3666665553
No 384
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=99.08 E-value=1.7e-10 Score=117.67 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=81.9
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcC--------CCCcccEEEEEE-
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR--------HRNIVKFYGFCS- 531 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~--------H~niv~l~~~~~- 531 (571)
++|++.+.||+|+||.||+|+ ..+++.||||++... ....+.+.+|++++++++ ||||+++++++.
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~ 112 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA----EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKI 112 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC----HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEE
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC----CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceee
Confidence 579999999999999999998 567899999999643 234567899999999885 788999999997
Q ss_pred ---eCCeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 532 ---HALHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 532 ---~~~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
.....|+||||+ +|++.+++..... ..+++.....|+
T Consensus 113 ~~~~~~~~~lv~e~~-~~~l~~~~~~~~~-~~~~~~~~~~i~ 152 (397)
T 1wak_A 113 SGVNGTHICMVFEVL-GHHLLKWIIKSNY-QGLPLPCVKKII 152 (397)
T ss_dssp EETTEEEEEEEECCC-CCBHHHHHHHTTT-SCCCHHHHHHHH
T ss_pred cCCCCceEEEEEecc-CccHHHHHHhccc-CCCCHHHHHHHH
Confidence 456789999999 5677777754322 357777766654
No 385
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=99.07 E-value=3.3e-10 Score=110.56 Aligned_cols=102 Identities=19% Similarity=0.214 Sum_probs=82.4
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEE-EeCCeeEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFC-SHALHSFV 538 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~-~~~~~~~l 538 (571)
.++|++.+.||+|+||.||+|+ ..+++.||||++...... +++.+|+++++.++|++++..++++ ......++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-----~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~l 82 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH-----PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM 82 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSC-----CHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcch-----hHHHHHHHHHHHhhcCCCCCccccccCCCCceEE
Confidence 4679999999999999999999 468999999998754322 3588999999999998877666665 56778899
Q ss_pred EEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 539 VYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||||+ +|+|.+++..... .+++..+..|+
T Consensus 83 v~e~~-~~~L~~~~~~~~~--~~~~~~~~~i~ 111 (296)
T 3uzp_A 83 VMELL-GPSLEDLFNFCSR--KFSLKTVLLLA 111 (296)
T ss_dssp EEECC-CCBHHHHHHHTTT--CCCHHHHHHHH
T ss_pred EEEec-CCCHHHHHHhhcc--CCCHHHHHHHH
Confidence 99999 8999999974332 47777776654
No 386
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.07 E-value=1.4e-10 Score=118.92 Aligned_cols=101 Identities=19% Similarity=0.263 Sum_probs=72.6
Q ss_pred CCc-cCeeeccCcceEEEEEcC---CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEe--CCeeE
Q 044615 464 FDD-GHCIGNGGQGSVYKAKLP---TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSH--ALHSF 537 (571)
Q Consensus 464 ~~~-~~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~--~~~~~ 537 (571)
|+. +++||+|+||.||+|+.+ +++.||||++..... .+.+.+|++++++++|||||++++++.. ....|
T Consensus 22 y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~-----~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 96 (405)
T 3rgf_A 22 FEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI-----SMSACREIALLRELKHPNVISLQKVFLSHADRKVW 96 (405)
T ss_dssp EECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC-----CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEE
T ss_pred hhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC-----CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEE
Confidence 555 568999999999999843 678999999975432 2467899999999999999999999965 67899
Q ss_pred EEEeccCCCChhhhhccCC------CccCCCHHHHhhhc
Q 044615 538 VVYEYLEMGSLAMNLSNDA------AAEQFCWTKRMNAI 570 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~------~~~~l~w~~r~~ia 570 (571)
+||||+++ +|.+++.... ....+++.....|+
T Consensus 97 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 134 (405)
T 3rgf_A 97 LLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLL 134 (405)
T ss_dssp EEEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHH
T ss_pred EEEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHH
Confidence 99999984 8888886321 12247777666554
No 387
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=99.06 E-value=2.6e-10 Score=112.63 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=72.9
Q ss_pred ccCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.++|+..+.||+|+||.||+|.. .+|+.||||++...... ....+.+..+..+++.++||||+++++++.+.+..|+|
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv 102 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNK-EENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIA 102 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCH-HHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccc-hHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEE
Confidence 35688899999999999999994 58999999999765322 22233444555678889999999999999999999999
Q ss_pred EeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 540 YEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
|||+ ++.+..+..... ..+++.....|+
T Consensus 103 ~e~~-~~~~~~l~~~~~--~~~~~~~~~~~~ 130 (318)
T 2dyl_A 103 MELM-GTCAEKLKKRMQ--GPIPERILGKMT 130 (318)
T ss_dssp ECCC-SEEHHHHHHHHT--SCCCHHHHHHHH
T ss_pred Eecc-CCcHHHHHHHhc--cCCCHHHHHHHH
Confidence 9999 445555444322 246666655543
No 388
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=99.06 E-value=3.7e-10 Score=110.24 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=79.3
Q ss_pred HccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEE-EeCCeeE
Q 044615 460 ATNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFC-SHALHSF 537 (571)
Q Consensus 460 ~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~-~~~~~~~ 537 (571)
..++|+..+.||+|+||.||+|. ..+++.||||++...... +.+.+|+++++.++|++++..++++ ...+..+
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-----~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~ 81 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH-----PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNV 81 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---C-----CCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccc-----hHHHHHHHHHHHhcCCCCCCeeeeecCCCCceE
Confidence 34679999999999999999999 468999999987644322 3478899999999998877777666 5677889
Q ss_pred EEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 538 VVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 538 lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+||||+ +|+|.+++..... .+++..+..|+
T Consensus 82 lv~e~~-~~~L~~~~~~~~~--~~~~~~~~~i~ 111 (296)
T 4hgt_A 82 MVMELL-GPSLEDLFNFCSR--KFSLKTVLLLA 111 (296)
T ss_dssp EEEECC-CCBHHHHHHHTTS--CCCHHHHHHHH
T ss_pred EEEEcc-CCCHHHHHHHhcC--CCCHHHHHHHH
Confidence 999999 9999999974332 47777776664
No 389
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=99.05 E-value=3.1e-10 Score=113.05 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=84.1
Q ss_pred cCCCccCeeeccCcceEEEEEc--CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCC------cccEEEEEEeC
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL--PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRN------IVKFYGFCSHA 533 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~n------iv~l~~~~~~~ 533 (571)
++|++.+.||+|+||.||+|.. .+++.||||++... ....+.+.+|+++++.++|++ ++++++++.+.
T Consensus 14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~----~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~ 89 (339)
T 1z57_A 14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV----DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHH 89 (339)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS----HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEET
T ss_pred CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC----CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccC
Confidence 4699999999999999999984 36889999998643 234567889999998887665 99999999999
Q ss_pred CeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 534 LHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 534 ~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+..|+||||+ +|+|.+++...+. ..+++.....|+
T Consensus 90 ~~~~lv~e~~-~~~l~~~l~~~~~-~~~~~~~~~~~~ 124 (339)
T 1z57_A 90 GHICIVFELL-GLSTYDFIKENGF-LPFRLDHIRKMA 124 (339)
T ss_dssp TEEEEEEECC-CCBHHHHHHHTTT-CCCCHHHHHHHH
T ss_pred CcEEEEEcCC-CCCHHHHHHhcCC-CCCcHHHHHHHH
Confidence 9999999999 8899999975432 356776666553
No 390
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=99.05 E-value=1.4e-10 Score=117.37 Aligned_cols=94 Identities=9% Similarity=0.032 Sum_probs=65.7
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc--CCCCcccEE-------EEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI--RHRNIVKFY-------GFC 530 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l--~H~niv~l~-------~~~ 530 (571)
..+|...+.||+|+||.||+|. ..+++.||||++...........+.+.+|+.+++.+ +||||++++ +++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 3458899999999999999999 458999999999876654555567788885544433 799988765 455
Q ss_pred EeC-----------------CeeEEEEeccCCCChhhhhccC
Q 044615 531 SHA-----------------LHSFVVYEYLEMGSLAMNLSND 555 (571)
Q Consensus 531 ~~~-----------------~~~~lv~e~~~~G~L~~~l~~~ 555 (571)
... ...|+|||||+ |+|.+++...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~ 181 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL 181 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh
Confidence 433 33799999999 8999999854
No 391
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=99.04 E-value=1.8e-10 Score=117.38 Aligned_cols=101 Identities=20% Similarity=0.196 Sum_probs=73.2
Q ss_pred cCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCe------
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHALH------ 535 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~------ 535 (571)
..|...+.||+|+||.||+|+...+..||+|++...... ..+|+++++.++|||||++++++.....
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~-------~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~ 112 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRF-------KNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVF 112 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTS-------CCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcch-------HHHHHHHHHhCCCCCcceEEEEEEecCCCCCceE
Confidence 459999999999999999999766666999988644322 2379999999999999999999976443
Q ss_pred eEEEEeccCCCChhhhhccCCCccCCCHHHHhhh
Q 044615 536 SFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNA 569 (571)
Q Consensus 536 ~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~i 569 (571)
.|+||||++++.+............+++.....+
T Consensus 113 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 146 (394)
T 4e7w_A 113 LNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLY 146 (394)
T ss_dssp EEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred EEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHH
Confidence 7899999997544333321112234556554433
No 392
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=99.03 E-value=2.3e-10 Score=117.68 Aligned_cols=100 Identities=26% Similarity=0.302 Sum_probs=75.3
Q ss_pred cCCCccCeeeccCcceEEEEEc-CCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEeC------C
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-PTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSHA------L 534 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------~ 534 (571)
..|+..+.||+|+||.||+|+. .+|+.||||++..... .+.+|++++++++|||||+++++|... .
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~-------~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~ 126 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEV 126 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT-------SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch-------hHHHHHHHHHHcCCCCccceeeEEeccCCCCcce
Confidence 3588899999999999999995 5799999999865432 133799999999999999999998652 2
Q ss_pred eeEEEEeccCCCChhhhhccC-CCccCCCHHHHhhh
Q 044615 535 HSFVVYEYLEMGSLAMNLSND-AAAEQFCWTKRMNA 569 (571)
Q Consensus 535 ~~~lv~e~~~~G~L~~~l~~~-~~~~~l~w~~r~~i 569 (571)
..++||||+++ ++.+.+... .....++|.....+
T Consensus 127 ~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~ 161 (420)
T 1j1b_A 127 YLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLY 161 (420)
T ss_dssp EEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred eEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHH
Confidence 36799999986 676666431 12235666655544
No 393
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=99.03 E-value=2.2e-10 Score=118.11 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=73.9
Q ss_pred cCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCeeEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~ 540 (571)
.+|...+.||+|+||+||.....+++.||||++..... ..+.+|+++++++ +|||||++++++.+....|+||
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~------~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~ 97 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF------SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAI 97 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE------EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEE
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH------HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEE
Confidence 35888899999999997655555899999999975432 2256899999999 8999999999999999999999
Q ss_pred eccCCCChhhhhccCC
Q 044615 541 EYLEMGSLAMNLSNDA 556 (571)
Q Consensus 541 e~~~~G~L~~~l~~~~ 556 (571)
|||+ |+|.+++....
T Consensus 98 E~~~-g~L~~~l~~~~ 112 (432)
T 3p23_A 98 ELCA-ATLQEYVEQKD 112 (432)
T ss_dssp ECCS-EEHHHHHHSSS
T ss_pred ECCC-CCHHHHHHhcC
Confidence 9997 59999998654
No 394
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=99.03 E-value=8.2e-11 Score=116.48 Aligned_cols=108 Identities=16% Similarity=0.196 Sum_probs=85.7
Q ss_pred HccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCch---HhHHHHHHHHHHHhhcC--CCCcccEEEEEEeC
Q 044615 460 ATNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEM---ACQQEFLNEVNALTKIR--HRNIVKFYGFCSHA 533 (571)
Q Consensus 460 ~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~---~~~~~~~~Ei~~l~~l~--H~niv~l~~~~~~~ 533 (571)
..++|++.+.||+|+||.||+|. ..+++.||||++........ ...+.+.+|+.++++++ ||||+++++++...
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~ 120 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP 120 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence 34679999999999999999998 56889999999975432211 11245778999999996 59999999999999
Q ss_pred CeeEEEEeccCC-CChhhhhccCCCccCCCHHHHhhhc
Q 044615 534 LHSFVVYEYLEM-GSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 534 ~~~~lv~e~~~~-G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+..++||||+.+ |+|.+++...+ .+++.....|+
T Consensus 121 ~~~~lv~e~~~~~~~L~~~l~~~~---~l~~~~~~~i~ 155 (320)
T 3a99_A 121 DSFVLILERPEPVQDLFDFITERG---ALQEELARSFF 155 (320)
T ss_dssp SEEEEEEECCSSEEEHHHHHHHHC---SCCHHHHHHHH
T ss_pred CcEEEEEEcCCCCccHHHHHhccC---CCCHHHHHHHH
Confidence 999999999986 89999997532 46666655543
No 395
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=99.02 E-value=3.3e-10 Score=117.05 Aligned_cols=86 Identities=20% Similarity=0.234 Sum_probs=72.5
Q ss_pred CCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCeeEEEEec
Q 044615 464 FDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALHSFVVYEY 542 (571)
Q Consensus 464 ~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e~ 542 (571)
|...+.||+|+||+||.+...+|+.||||++... ..+.+.+|++++.++ +|||||++++++.+.+..|+||||
T Consensus 17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~------~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~ 90 (434)
T 2rio_A 17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID------FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALEL 90 (434)
T ss_dssp EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG------GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECC
T ss_pred eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH------HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEec
Confidence 4556889999999998766668999999998642 135678999999876 899999999999999999999999
Q ss_pred cCCCChhhhhccCC
Q 044615 543 LEMGSLAMNLSNDA 556 (571)
Q Consensus 543 ~~~G~L~~~l~~~~ 556 (571)
|+ |+|.+++....
T Consensus 91 ~~-gsL~~~l~~~~ 103 (434)
T 2rio_A 91 CN-LNLQDLVESKN 103 (434)
T ss_dssp CS-EEHHHHHHTC-
T ss_pred CC-CCHHHHHhccC
Confidence 96 69999998643
No 396
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=99.02 E-value=9.1e-10 Score=114.82 Aligned_cols=102 Identities=20% Similarity=0.200 Sum_probs=82.5
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCC-CCcccEEEEEEeCCeeEE
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH-RNIVKFYGFCSHALHSFV 538 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H-~niv~l~~~~~~~~~~~l 538 (571)
.++|++.+.||+|+||.||+|. ..+++.||||++...... +++.+|++++..++| ++++.+..++...+..++
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~-----~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~l 80 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH-----PQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVL 80 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS-----CCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc-----HHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEE
Confidence 3579999999999999999999 568999999998754322 347899999999987 556666677777889999
Q ss_pred EEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 539 VYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 539 v~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
||||+ +|+|.+++..... .++|..++.|+
T Consensus 81 vme~~-g~sL~~ll~~~~~--~l~~~~~~~i~ 109 (483)
T 3sv0_A 81 VMDLL-GPSLEDLFNFCSR--KLSLKTVLMLA 109 (483)
T ss_dssp EEECC-CCBHHHHHHHTTT--CCCHHHHHHHH
T ss_pred EEECC-CCCHHHHHHhhcC--CCCHHHHHHHH
Confidence 99999 9999999974332 57888777765
No 397
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=4.2e-10 Score=112.48 Aligned_cols=83 Identities=16% Similarity=0.316 Sum_probs=41.4
Q ss_pred CCCCCEEEcccCccccccchhhc---cCCCCCEEEcCCccCccCc----chhhhcccCCCEEEccCCcCCcccchhccC-
Q 044615 241 LIQLEYLDLSANTFHKSIPESLS---NLVKLHYLNLSNNQFSQKI----PNKIEKLIHLSELDLSHNIFREEIPSQICS- 312 (571)
Q Consensus 241 l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~- 312 (571)
+++|+.|+|.+|.+.+..+..+. .+++|+.|+|+.|.+++.. +..+..+++|+.|+|++|.++......+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 45555555555555433222222 3456666666666655432 222334566666666666655443333332
Q ss_pred CCCCCEEEccCCc
Q 044615 313 MQSLEKLNLSHNN 325 (571)
Q Consensus 313 l~~L~~L~Ls~n~ 325 (571)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3446666655
No 398
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=98.99 E-value=4e-10 Score=113.99 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=83.4
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcC-----------CCCcccEEEE
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR-----------HRNIVKFYGF 529 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~-----------H~niv~l~~~ 529 (571)
++|.+.+.||+|+||.||+|+ ..+++.||||++... ....+.+.+|++++.+++ ||||++++++
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~ 94 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD----KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDH 94 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC----HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC----ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHH
Confidence 569999999999999999999 568999999999743 233567889999998876 8999999999
Q ss_pred EEeCC----eeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 530 CSHAL----HSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 530 ~~~~~----~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+...+ ..++||||+ +|+|.+++..... ..+++.....|+
T Consensus 95 ~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~-~~~~~~~~~~i~ 137 (373)
T 1q8y_A 95 FNHKGPNGVHVVMVFEVL-GENLLALIKKYEH-RGIPLIYVKQIS 137 (373)
T ss_dssp EEEEETTEEEEEEEECCC-CEEHHHHHHHTTT-SCCCHHHHHHHH
T ss_pred hhccCCCCceEEEEEecC-CCCHHHHHHHhhc-cCCcHHHHHHHH
Confidence 98654 789999999 8999999975432 246776666554
No 399
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=7e-10 Score=110.86 Aligned_cols=149 Identities=17% Similarity=0.240 Sum_probs=87.3
Q ss_pred CcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhh--CCCCCCEEEccc--Cccccc-----cchhh--cc
Q 044615 196 LKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELG--SLIQLEYLDLSA--NTFHKS-----IPESL--SN 264 (571)
Q Consensus 196 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~-----~~~~l--~~ 264 (571)
|+.|++++|.-. .++. +. +++|+.|++..+.+.......+. .+|+|+.|+|+. |...+. +...+ ..
T Consensus 174 L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~ 250 (362)
T 2ra8_A 174 LNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250 (362)
T ss_dssp CCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTT
T ss_pred CcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCC
Confidence 666666655211 1121 22 56777777776666543333333 577888887753 221111 11122 24
Q ss_pred CCCCCEEEcCCccCccCcchhhh---cccCCCEEEccCCcCCccc----chhccCCCCCCEEEccCCcCcccccccccc-
Q 044615 265 LVKLHYLNLSNNQFSQKIPNKIE---KLIHLSELDLSHNIFREEI----PSQICSMQSLEKLNLSHNNLSGSIPRCFEE- 336 (571)
Q Consensus 265 l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~- 336 (571)
+++|+.|+|.+|.+....+..+. .+++|+.|+|+.|.+.+.. +..+..+++|+.|+|++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 68888888888887654433332 4678888888888877642 233345688888888888877554444443
Q ss_pred CCCCCEEECcCCc
Q 044615 337 MHWLSCIDISYNA 349 (571)
Q Consensus 337 l~~L~~L~ls~N~ 349 (571)
+ ...++++.|+
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3557777665
No 400
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=98.99 E-value=1e-09 Score=111.49 Aligned_cols=104 Identities=23% Similarity=0.196 Sum_probs=83.9
Q ss_pred ccCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcC-CC-----CcccEEEEEEeC
Q 044615 461 TNNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR-HR-----NIVKFYGFCSHA 533 (571)
Q Consensus 461 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~-H~-----niv~l~~~~~~~ 533 (571)
.++|++.+.||+|+||.||+|. ..+++.||||++... ....+++.+|++++..++ |+ +|+++++++...
T Consensus 53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~ 128 (382)
T 2vx3_A 53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK----KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFR 128 (382)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS----HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEET
T ss_pred eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc----HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccC
Confidence 4679999999999999999998 457889999999743 233567788999888875 45 499999999999
Q ss_pred CeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 534 LHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 534 ~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+..|+||||++ |+|.+++..... ..++|..+..|+
T Consensus 129 ~~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~i~ 163 (382)
T 2vx3_A 129 NHLCLVFEMLS-YNLYDLLRNTNF-RGVSLNLTRKFA 163 (382)
T ss_dssp TEEEEEEECCC-CBHHHHHHHTTT-SCCCHHHHHHHH
T ss_pred CceEEEEecCC-CCHHHHHhhcCc-CCCCHHHHHHHH
Confidence 99999999996 599999985432 247777776654
No 401
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=98.96 E-value=1.3e-09 Score=109.30 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=82.8
Q ss_pred cCCCccCeeeccCcceEEEEEc-CCC-CEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCC------cccEEEEEEeC
Q 044615 462 NNFDDGHCIGNGGQGSVYKAKL-PTG-EIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRN------IVKFYGFCSHA 533 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~~-~~~-~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~n------iv~l~~~~~~~ 533 (571)
++|++.+.||+|+||.||+|.. .++ +.||+|++... ....+.+.+|+.++++++|++ ++.+++++...
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 94 (355)
T 2eu9_A 19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV----GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFH 94 (355)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC----HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEET
T ss_pred ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc----ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeC
Confidence 5799999999999999999984 444 68999999643 234567889999999988776 99999999999
Q ss_pred CeeEEEEeccCCCChhhhhccCCCccCCCHHHHhhhc
Q 044615 534 LHSFVVYEYLEMGSLAMNLSNDAAAEQFCWTKRMNAI 570 (571)
Q Consensus 534 ~~~~lv~e~~~~G~L~~~l~~~~~~~~l~w~~r~~ia 570 (571)
+..|+||||+ +|++.+++..... ..+++.....|+
T Consensus 95 ~~~~lv~e~~-~~~l~~~l~~~~~-~~~~~~~~~~i~ 129 (355)
T 2eu9_A 95 GHMCIAFELL-GKNTFEFLKENNF-QPYPLPHVRHMA 129 (355)
T ss_dssp TEEEEEEECC-CCBHHHHHHHTTT-CCCCHHHHHHHH
T ss_pred CeEEEEEecc-CCChHHHHHhccC-CCCCHHHHHHHH
Confidence 9999999999 6678787765432 357777776654
No 402
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=98.90 E-value=1.6e-09 Score=114.78 Aligned_cols=89 Identities=13% Similarity=0.071 Sum_probs=64.8
Q ss_pred CccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCch-----HhHHHHHHHHHHHhhcCCCCcccEEEEEEeCCeeEEE
Q 044615 465 DDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEM-----ACQQEFLNEVNALTKIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 465 ~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~-----~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 539 (571)
...+.||+|+||.||+|.. .++.+|+|+......... ...++|.+|++++++++||||+++..++...+..|+|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 3457899999999999954 578899998765333221 1245689999999999999999766666678888999
Q ss_pred EeccCCCChhhhhcc
Q 044615 540 YEYLEMGSLAMNLSN 554 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~ 554 (571)
|||+++|+|.++++.
T Consensus 418 mE~~~ggsL~~~l~~ 432 (540)
T 3en9_A 418 MSYINGKLAKDVIED 432 (540)
T ss_dssp EECCCSEEHHHHSTT
T ss_pred EECCCCCCHHHHHHH
Confidence 999999999999875
No 403
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=98.85 E-value=3.1e-09 Score=102.74 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=71.1
Q ss_pred HHHHHHHccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCch---------------HhHHHHHHHHHHHhhc
Q 044615 454 HEEIIRATNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEM---------------ACQQEFLNEVNALTKI 518 (571)
Q Consensus 454 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~---------------~~~~~~~~Ei~~l~~l 518 (571)
...+......|.+.+.||+|+||.||+|...+|+.||||.+........ .....+.+|+++++++
T Consensus 82 l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l 161 (282)
T 1zar_A 82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL 161 (282)
T ss_dssp HHHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc
Confidence 3445555667888899999999999999987799999999965322110 2356799999999999
Q ss_pred CCCCcccEEEEEEeCCeeEEEEeccCCCChhhhhc
Q 044615 519 RHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLS 553 (571)
Q Consensus 519 ~H~niv~l~~~~~~~~~~~lv~e~~~~G~L~~~l~ 553 (571)
+| +++.+++.. +..|+||||++||+|.+ +.
T Consensus 162 ~~---~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~ 191 (282)
T 1zar_A 162 QG---LAVPKVYAW-EGNAVLMELIDAKELYR-VR 191 (282)
T ss_dssp TT---SSSCCEEEE-ETTEEEEECCCCEEGGG-CC
T ss_pred cC---CCcCeEEec-cceEEEEEecCCCcHHH-cc
Confidence 84 555555533 45699999999999998 53
No 404
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.81 E-value=5.8e-07 Score=90.84 Aligned_cols=280 Identities=12% Similarity=0.043 Sum_probs=142.9
Q ss_pred CCCCCCEEEccCCccc------cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCcccccccccC
Q 044615 46 RAVQARDTSISFDELH------EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLALGN 119 (571)
Q Consensus 46 ~~~~l~~l~l~~n~l~------~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 119 (571)
...+++...+... ++ |.++.+|+.+.|..+ ++. .-..+|.++ +|+.+.+..+ +..+...+|..
T Consensus 44 ~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~-------Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~ 112 (379)
T 4h09_A 44 DRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTS-------IGDGAFADT-KLQSYTGMER-VKKFGDYVFQG 112 (379)
T ss_dssp GGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCE-------ECTTTTTTC-CCCEEEECTT-CCEECTTTTTT
T ss_pred cccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceE-------echhhhcCC-CCceEECCce-eeEeccceecc
Confidence 3445555555432 22 555666666665432 221 112234444 4555555433 33333444443
Q ss_pred CCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcccCCccccCCCCCCEEEccCCCCCccCC------------h
Q 044615 120 LTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKLNGSIP------------L 187 (571)
Q Consensus 120 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p------------~ 187 (571)
.+|+.+.+..+- .......|.+. +|+.+.+..+ +.......+..+.+++.+.+..+....... .
T Consensus 113 -~~L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (379)
T 4h09_A 113 -TDLDDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE 188 (379)
T ss_dssp -CCCSEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred -CCcccccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceec
Confidence 356666665442 22333334433 3444444332 233334455666666666655443221100 0
Q ss_pred hhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhccCCC
Q 044615 188 SLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSNLVK 267 (571)
Q Consensus 188 ~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 267 (571)
.+..... +..+.+.... .......+....+|+.+.+..+ +.......+.++..|+.+.+..+ ++.....+|.++.+
T Consensus 189 ~~~~~~~-~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 189 SYPAAKT-GTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp ECCTTCC-CSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred ccccccc-ccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence 0111111 2233222211 1122334455566666666543 33344455666777777777654 44444556677777
Q ss_pred CCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECc
Q 044615 268 LHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDIS 346 (571)
Q Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls 346 (571)
|+.+.+..+ +.......|.++.+|+.+.+.++.++.+....|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+.
T Consensus 265 l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 265 LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 777777544 44344456677777777777777666666667777777777777543 555556677777777766654
No 405
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.78 E-value=6.7e-09 Score=110.59 Aligned_cols=88 Identities=19% Similarity=0.103 Sum_probs=65.3
Q ss_pred eeeccCcceEEEEE-cCCCCEEEEEEccCCCCC-------chHhHHHHHHHHHHHhhc-CCCCcccEEEEEEeCCeeEEE
Q 044615 469 CIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPD-------EMACQQEFLNEVNALTKI-RHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 469 ~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~-------~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv 539 (571)
..+.|+.|.+..++ .-.|+.||||++.+.... .....++|.+|+++|+++ .|+||+++++++++.+..|||
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV 320 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV 320 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence 35667777666655 446899999999765321 123356799999999999 799999999999999999999
Q ss_pred EeccCCCChhhhhccCC
Q 044615 540 YEYLEMGSLAMNLSNDA 556 (571)
Q Consensus 540 ~e~~~~G~L~~~l~~~~ 556 (571)
|||++||+|.++|.+.+
T Consensus 321 MEyv~G~~L~d~i~~~~ 337 (569)
T 4azs_A 321 MEKLPGRLLSDMLAAGE 337 (569)
T ss_dssp EECCCSEEHHHHHHTTC
T ss_pred EecCCCCcHHHHHHhCC
Confidence 99999999999998654
No 406
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.76 E-value=1.3e-06 Score=88.25 Aligned_cols=277 Identities=10% Similarity=0.008 Sum_probs=187.2
Q ss_pred hhhcCCCCCCEEEccCCccc-----cCCCCccceeecccccccCCCCCCCccccccccCCCCCCEEecccCcCccccccc
Q 044615 42 KELVRAVQARDTSISFDELH-----EKLLTFEATAHFSVLAFTGQDWPLYSSIPDEIGNMKSLSDLQLSENILNGSIPLA 116 (571)
Q Consensus 42 ~~l~~~~~l~~l~l~~n~l~-----~~~l~~l~~l~l~~n~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~ 116 (571)
..+.++.+|+.+.|..+--. |..+ .|+.+.+..+ +. .+++......+|+.+.+..+ +.......
T Consensus 63 ~aF~~C~~L~~I~lp~~v~~Ig~~aF~~c-~l~~i~~~~~-l~--------~I~~~aF~~~~L~~i~lp~~-~~~i~~~~ 131 (379)
T 4h09_A 63 ANFNSCYNMTKVTVASTVTSIGDGAFADT-KLQSYTGMER-VK--------KFGDYVFQGTDLDDFEFPGA-TTEIGNYI 131 (379)
T ss_dssp TTTTTCTTCCEEEECTTCCEECTTTTTTC-CCCEEEECTT-CC--------EECTTTTTTCCCSEEECCTT-CCEECTTT
T ss_pred HHhhCCCCCCEEEeCCcceEechhhhcCC-CCceEECCce-ee--------EeccceeccCCcccccCCCc-cccccccc
Confidence 45778899999999755222 4444 4555544321 22 33333223358999999865 33344555
Q ss_pred ccCCCCCCEEEcccCcCcccccccccCCCCCCeeecccCcCcc------------cCCccccCCCCCCEEEccCCCCCcc
Q 044615 117 LGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLYENSLCD------------SIPKEIGNMNSLSILDLSSNKLNGS 184 (571)
Q Consensus 117 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~l~~l~~L~~L~L~~n~l~~~ 184 (571)
|.+. +|+.+.+..+ ++.+....|....+++.+.+..+.... .....+.....+..+.+...... .
T Consensus 132 F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i 208 (379)
T 4h09_A 132 FYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-V 208 (379)
T ss_dssp TTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-E
T ss_pred cccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE-E
Confidence 6554 6777776554 444666778888888888776544321 11223445556666666443322 3
Q ss_pred CChhhhhccCCCcEEEccCCcccccCCccccCCCCCcEEeCccCcCcCCCChhhhCCCCCCEEEcccCccccccchhhcc
Q 044615 185 IPLSLANLTNSLKVLYLSSNHIVGEIPLGHGMLSSLIQLTLNNNELSGQLSPELGSLIQLEYLDLSANTFHKSIPESLSN 264 (571)
Q Consensus 185 ~p~~~~~l~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 264 (571)
....+.... +|+.+.+..+ +.......+..+..|+.+.+..+ ++......|.++.+|+.+.+..+ +......+|.+
T Consensus 209 ~~~~f~~~~-~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~ 284 (379)
T 4h09_A 209 TAYGFSYGK-NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSG 284 (379)
T ss_dssp CTTTTTTCS-SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTT
T ss_pred eeccccccc-ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccc
Confidence 333444444 4888888654 34355667788889999998775 55566678888999999999754 55455678899
Q ss_pred CCCCCEEEcCCccCccCcchhhhcccCCCEEEccCCcCCcccchhccCCCCCCEEEccCCcCccccccccccCC
Q 044615 265 LVKLHYLNLSNNQFSQKIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMH 338 (571)
Q Consensus 265 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 338 (571)
+++|+.+.+.++.++......|.++.+|+.+.|..+ ++.+...+|.++++|+.+.+..+ ++.+-..+|.++.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 999999999999888777789999999999999755 66666778999999999998654 6656666777664
No 407
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=4.1e-08 Score=88.42 Aligned_cols=115 Identities=14% Similarity=0.153 Sum_probs=66.2
Q ss_pred hhhCCCCCCEEEcccC-ccccc----cchhhccCCCCCEEEcCCccCccCc----chhhhcccCCCEEEccCCcCCcc--
Q 044615 237 ELGSLIQLEYLDLSAN-TFHKS----IPESLSNLVKLHYLNLSNNQFSQKI----PNKIEKLIHLSELDLSHNIFREE-- 305 (571)
Q Consensus 237 ~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~-- 305 (571)
.+...++|+.|+|++| .+... +...+...++|++|+|++|.+.... ...+...+.|+.|+|++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444555666666665 55432 2333445566666666666665322 23334445677777777766543
Q ss_pred --cchhccCCCCCCEEEc--cCCcCccc----cccccccCCCCCEEECcCCcCc
Q 044615 306 --IPSQICSMQSLEKLNL--SHNNLSGS----IPRCFEEMHWLSCIDISYNALQ 351 (571)
Q Consensus 306 --~~~~~~~l~~L~~L~L--s~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~ 351 (571)
+...+...++|++|+| ++|.++.. +.+.+...+.|+.|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3344555667777777 66777643 2334445577788888777664
No 408
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.48 E-value=4.5e-08 Score=88.17 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=53.8
Q ss_pred cccCCCCCCEEecccC-cCccc----ccccccCCCCCCEEEcccCcCccc----ccccccCCCCCCeeecccCcCccc--
Q 044615 92 EIGNMKSLSDLQLSEN-ILNGS----IPLALGNLTNLVVLDLSTNKLSGS----IPLSFANLTSLSILYLYENSLCDS-- 160 (571)
Q Consensus 92 ~~~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~-- 160 (571)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.|... +...+...++|++|+|++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455667777777777 66532 234445556677777777776532 223344456677777777776542
Q ss_pred --CCccccCCCCCCEEEc--cCCCCCc
Q 044615 161 --IPKEIGNMNSLSILDL--SSNKLNG 183 (571)
Q Consensus 161 --~~~~l~~l~~L~~L~L--~~n~l~~ 183 (571)
+...+...++|++|+| ++|.+..
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 2334555566666766 5666653
No 409
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.48 E-value=4.6e-08 Score=92.66 Aligned_cols=80 Identities=30% Similarity=0.385 Sum_probs=52.9
Q ss_pred ccCCCCCEEEcCCccCcc--CcchhhhcccCCCEEEccCCcCCcccchhccCCC--CCCEEEccCCcCccccc-------
Q 044615 263 SNLVKLHYLNLSNNQFSQ--KIPNKIEKLIHLSELDLSHNIFREEIPSQICSMQ--SLEKLNLSHNNLSGSIP------- 331 (571)
Q Consensus 263 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~p------- 331 (571)
.++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++.+. ..+..+. +|++|+|++|++.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456777777777777766 3345566777777777777777654 2233333 78888888888876554
Q ss_pred cccccCCCCCEEE
Q 044615 332 RCFEEMHWLSCID 344 (571)
Q Consensus 332 ~~~~~l~~L~~L~ 344 (571)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2356677777775
No 410
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.39 E-value=6.5e-08 Score=91.64 Aligned_cols=65 Identities=29% Similarity=0.402 Sum_probs=33.0
Q ss_pred CCCCCCEEEcccCcCcc--cccccccCCCCCCeeecccCcCcccCCccccCCC--CCCEEEccCCCCCccC
Q 044615 119 NLTNLVVLDLSTNKLSG--SIPLSFANLTSLSILYLYENSLCDSIPKEIGNMN--SLSILDLSSNKLNGSI 185 (571)
Q Consensus 119 ~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~ 185 (571)
++++|++|+|++|+|++ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|.+.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 45556666666666554 2234445555666666666655543 1222222 5555555555555433
No 411
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=98.35 E-value=2.7e-07 Score=94.51 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=70.7
Q ss_pred cCCCccCeeeccCcceEEEEE-cCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCC-CCcc---------------
Q 044615 462 NNFDDGHCIGNGGQGSVYKAK-LPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH-RNIV--------------- 524 (571)
Q Consensus 462 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H-~niv--------------- 524 (571)
..|...+.||+|+||.||+|. ..+|+.||||++...........+.|.+|+.+++.++| +|..
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV 157 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence 457778899999999999999 66899999999985444433446779999999999987 2211
Q ss_pred ------cEEEEEEe-----CCeeEEEEeccCCCChhhhhcc----CCCccCCCHHHHhhhc
Q 044615 525 ------KFYGFCSH-----ALHSFVVYEYLEMGSLAMNLSN----DAAAEQFCWTKRMNAI 570 (571)
Q Consensus 525 ------~l~~~~~~-----~~~~~lv~e~~~~G~L~~~l~~----~~~~~~l~w~~r~~ia 570 (571)
.+..++.. ....+++|+++ +|+|.+++.. ......++|..++.|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~ 217 (413)
T 3dzo_A 158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLT 217 (413)
T ss_dssp ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHH
T ss_pred ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHH
Confidence 11111111 12356777755 5799998851 1223457788877763
No 412
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=98.34 E-value=2.7e-07 Score=87.83 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=61.6
Q ss_pred CCCccCeeeccCcceEEEEEc-CCCCE--EEEEEccCCCCCc---------------------hHhHHHHHHHHHHHhhc
Q 044615 463 NFDDGHCIGNGGQGSVYKAKL-PTGEI--VDVKKFHSPLPDE---------------------MACQQEFLNEVNALTKI 518 (571)
Q Consensus 463 ~~~~~~~lg~G~~g~V~~~~~-~~~~~--vavK~~~~~~~~~---------------------~~~~~~~~~Ei~~l~~l 518 (571)
-|++.+.||+|+||.||+|.. .+|+. ||||+++...... ......+.+|++++.++
T Consensus 48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l 127 (258)
T 1zth_A 48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA 127 (258)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence 367788999999999999996 78989 9999976432110 01124688999999999
Q ss_pred CCCCc--ccEEEEEEeCCeeEEEEeccCC-C----Chhhhhc
Q 044615 519 RHRNI--VKFYGFCSHALHSFVVYEYLEM-G----SLAMNLS 553 (571)
Q Consensus 519 ~H~ni--v~l~~~~~~~~~~~lv~e~~~~-G----~L~~~l~ 553 (571)
.|+++ +..+++ ...++||||+.+ | +|.++..
T Consensus 128 ~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~ 165 (258)
T 1zth_A 128 KEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGR 165 (258)
T ss_dssp HHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGG
T ss_pred HhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhh
Confidence 88864 344432 356899999942 4 6666544
No 413
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=3.9e-07 Score=79.97 Aligned_cols=93 Identities=11% Similarity=0.073 Sum_probs=67.8
Q ss_pred cccccccCCCCCCEEecccCcCcccccccccCCCCCCEEEcccCc-CcccccccccCC----CCCCeeecccCc-CcccC
Q 044615 88 SIPDEIGNMKSLSDLQLSENILNGSIPLALGNLTNLVVLDLSTNK-LSGSIPLSFANL----TSLSILYLYENS-LCDSI 161 (571)
Q Consensus 88 ~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~ 161 (571)
.+|.....-..|+.||++++.++...-..+.++++|++|+|++|. |+..--..++.+ ++|++|+|++|. +++..
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 345433223568899999988887766777888999999999985 665444455554 368999998875 76654
Q ss_pred CccccCCCCCCEEEccCCC
Q 044615 162 PKEIGNMNSLSILDLSSNK 180 (571)
Q Consensus 162 ~~~l~~l~~L~~L~L~~n~ 180 (571)
-..+..+++|++|++++|.
T Consensus 132 l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCTTCCEEEEESCT
T ss_pred HHHHhcCCCCCEEECCCCC
Confidence 5567788889999998886
No 414
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=98.11 E-value=4e-06 Score=83.50 Aligned_cols=97 Identities=9% Similarity=0.038 Sum_probs=62.9
Q ss_pred HHHHHHccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCC-----c------hHhHH--------HHHHHHHHH
Q 044615 455 EEIIRATNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPD-----E------MACQQ--------EFLNEVNAL 515 (571)
Q Consensus 455 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~-----~------~~~~~--------~~~~Ei~~l 515 (571)
..+.....-|.+.+.||+|+||.||+|..++|+.||||+++..... . ..... ...+|...|
T Consensus 88 ~~L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL 167 (397)
T 4gyi_A 88 HTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFM 167 (397)
T ss_dssp HHHHHTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 3444444458999999999999999999888999999987642110 0 00001 124567777
Q ss_pred hhcCCCCcccEEEEEEeCCeeEEEEeccCCCChhhhhc
Q 044615 516 TKIRHRNIVKFYGFCSHALHSFVVYEYLEMGSLAMNLS 553 (571)
Q Consensus 516 ~~l~H~niv~l~~~~~~~~~~~lv~e~~~~G~L~~~l~ 553 (571)
.++.++++.-..-+... ..+|||||++|+.|.++..
T Consensus 168 ~rL~~~gv~vp~p~~~~--~~~LVME~i~G~~L~~l~~ 203 (397)
T 4gyi_A 168 KALYEEGFPVPEPIAQS--RHTIVMSLVDALPMRQVSS 203 (397)
T ss_dssp HHHHHTTCSCCCEEEEE--TTEEEEECCSCEEGGGCCC
T ss_pred HHHHhcCCCCCeeeecc--CceEEEEecCCccHhhhcc
Confidence 77765554322222222 2379999999999876553
No 415
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=3.6e-06 Score=73.85 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=50.2
Q ss_pred CCCCEEEcccCccccccchhhccCCCCCEEEcCCcc-CccCcchhhhcc----cCCCEEEccCCc-CCcccchhccCCCC
Q 044615 242 IQLEYLDLSANTFHKSIPESLSNLVKLHYLNLSNNQ-FSQKIPNKIEKL----IHLSELDLSHNI-FREEIPSQICSMQS 315 (571)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 315 (571)
.+|+.||++++.++..-...+.++++|+.|+|++|. ++...-..+..+ ++|+.|+|++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666655544555666677777777664 544333334432 357777777663 65554455666677
Q ss_pred CCEEEccCCc
Q 044615 316 LEKLNLSHNN 325 (571)
Q Consensus 316 L~~L~Ls~n~ 325 (571)
|+.|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777664
No 416
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=97.55 E-value=0.00015 Score=68.83 Aligned_cols=91 Identities=12% Similarity=0.007 Sum_probs=71.5
Q ss_pred HHHccCCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcC-CCCcccEEEEEEeCCee
Q 044615 458 IRATNNFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR-HRNIVKFYGFCSHALHS 536 (571)
Q Consensus 458 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~ 536 (571)
.....+|......+.|+.+.||++... ++.+++|......... ...+.+|+++++.+. |..+.++++++...+..
T Consensus 10 ~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~---~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~ 85 (263)
T 3tm0_A 10 KKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGT---TYDVEREKDMMLWLEGKLPVPKVLHFERHDGWS 85 (263)
T ss_dssp HHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTS---TTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEE
T ss_pred HHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCC---HHHHHHHHHHHHHHhcCCCCCeEEEEEecCCce
Confidence 344567888888888889999999854 6889999986421111 235789999998884 67788999999998999
Q ss_pred EEEEeccCCCChhhhh
Q 044615 537 FVVYEYLEMGSLAMNL 552 (571)
Q Consensus 537 ~lv~e~~~~G~L~~~l 552 (571)
|+||||++|.++.+.+
T Consensus 86 ~lv~e~i~G~~l~~~~ 101 (263)
T 3tm0_A 86 NLLMSEADGVLCSEEY 101 (263)
T ss_dssp EEEEECCSSEEHHHHC
T ss_pred EEEEEecCCeehhhcc
Confidence 9999999999998753
No 417
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=0.00027 Score=63.16 Aligned_cols=111 Identities=19% Similarity=0.246 Sum_probs=60.9
Q ss_pred CCCCCCEEEcccC-ccccc----cchhhccCCCCCEEEcCCccCccC----cchhhhcccCCCEEEccCCcCCcc----c
Q 044615 240 SLIQLEYLDLSAN-TFHKS----IPESLSNLVKLHYLNLSNNQFSQK----IPNKIEKLIHLSELDLSHNIFREE----I 306 (571)
Q Consensus 240 ~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~ 306 (571)
.-+.|+.|+|++| .+... +...+..-+.|+.|+|++|.+... +...+..-..|+.|+|++|.|... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3445666666553 44321 334445556666677777666532 223344456677777777776543 2
Q ss_pred chhccCCCCCCEEEccCC---cCccc----cccccccCCCCCEEECcCCcC
Q 044615 307 PSQICSMQSLEKLNLSHN---NLSGS----IPRCFEEMHWLSCIDISYNAL 350 (571)
Q Consensus 307 ~~~~~~l~~L~~L~Ls~n---~l~~~----~p~~~~~l~~L~~L~ls~N~l 350 (571)
-..+..-+.|++|+|++| .+... +.+.+..-+.|+.|+++.|.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 234455566777777754 33321 233445556777777766543
No 418
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=97.18 E-value=0.00075 Score=64.86 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=60.1
Q ss_pred CccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCC---CcccEEEEEEeCCeeEEEEe
Q 044615 465 DDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHR---NIVKFYGFCSHALHSFVVYE 541 (571)
Q Consensus 465 ~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~---niv~l~~~~~~~~~~~lv~e 541 (571)
...+.+|.|.++.||++...+|+.++||+....... ....|.+|++.|+.+.|. .+++++++. ..++|||
T Consensus 18 ~~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~---~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme 90 (288)
T 3d1u_A 18 AAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPA---LDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAME 90 (288)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCC---CTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEE
T ss_pred cceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcc---hhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEE
Confidence 345679999999999999878999999997543221 135688999999999775 577877763 3689999
Q ss_pred ccCCCCh
Q 044615 542 YLEMGSL 548 (571)
Q Consensus 542 ~~~~G~L 548 (571)
|++++.+
T Consensus 91 ~l~g~~~ 97 (288)
T 3d1u_A 91 WVDERPP 97 (288)
T ss_dssp CCCCCCC
T ss_pred ecccCCC
Confidence 9999875
No 419
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.13 E-value=0.00033 Score=62.58 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=48.5
Q ss_pred hhCCCCCCEEEcccCccccc----cchhhccCCCCCEEEcCCccCccCc----chhhhcccCCCEEEccCC---cCCc--
Q 044615 238 LGSLIQLEYLDLSANTFHKS----IPESLSNLVKLHYLNLSNNQFSQKI----PNKIEKLIHLSELDLSHN---IFRE-- 304 (571)
Q Consensus 238 ~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n---~l~~-- 304 (571)
+..-+.|+.|+|++|.+.+. +...+..-+.|+.|+|+.|.|+... ...+..-..|+.|+|++| .+..
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 34445566666666666532 2233444566777777777665432 223344456777777654 2322
Q ss_pred --ccchhccCCCCCCEEEccCCcC
Q 044615 305 --EIPSQICSMQSLEKLNLSHNNL 326 (571)
Q Consensus 305 --~~~~~~~~l~~L~~L~Ls~n~l 326 (571)
.+...+..-+.|+.|+++.|.+
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhCCCcCeEeccCCCc
Confidence 1233455566777777776654
No 420
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=97.09 E-value=0.00068 Score=63.95 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=59.8
Q ss_pred CCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCC--cccEEEEEEeCCeeEEEE
Q 044615 463 NFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRN--IVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 463 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~n--iv~l~~~~~~~~~~~lv~ 540 (571)
+|......+.|..+.||++...+|..+++|...... ...+.+|+++++.+.+.+ +.+++++...++..|+||
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~------~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~ 94 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGA------LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLL 94 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCT------TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEE
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCccc------chhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEE
Confidence 444433334556699999987778889999976431 134678999998886544 456888888877889999
Q ss_pred eccCCCChh
Q 044615 541 EYLEMGSLA 549 (571)
Q Consensus 541 e~~~~G~L~ 549 (571)
||++|.++.
T Consensus 95 e~i~G~~l~ 103 (264)
T 1nd4_A 95 GEVPGQDLL 103 (264)
T ss_dssp ECCSSEETT
T ss_pred EecCCcccC
Confidence 999998884
No 421
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.58 E-value=0.0042 Score=51.60 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=31.7
Q ss_pred EEEccCCcCC-cccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcCCcCcc
Q 044615 294 ELDLSHNIFR-EEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISYNALQG 352 (571)
Q Consensus 294 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 352 (571)
.++.+++.++ ..+|..+ -++|+.|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4555555554 1233222 1246666666666665555666666666666666666543
No 422
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.47 E-value=0.0043 Score=51.55 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=15.1
Q ss_pred CCeeecccCcCcccCCccccCCCCCCEEEccCCCC
Q 044615 147 LSILYLYENSLCDSIPKEIGNMNSLSILDLSSNKL 181 (571)
Q Consensus 147 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 181 (571)
|++|+|++|.|+...+..|..+++|++|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444433333344444444444444443
No 423
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=95.60 E-value=0.015 Score=57.67 Aligned_cols=81 Identities=14% Similarity=0.233 Sum_probs=57.2
Q ss_pred ccCeeeccCcceEEEEEcCCCCEEEEEEcc--CCCCCchHhHHHHHHHHHHHhhcC--CCCcccEEEEEEeC---CeeEE
Q 044615 466 DGHCIGNGGQGSVYKAKLPTGEIVDVKKFH--SPLPDEMACQQEFLNEVNALTKIR--HRNIVKFYGFCSHA---LHSFV 538 (571)
Q Consensus 466 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~--~~~~~~~~~~~~~~~Ei~~l~~l~--H~niv~l~~~~~~~---~~~~l 538 (571)
..+.++.|.++.||+.... +..+++|+.. ..... .....+.+|+++++.+. +..++++++++.+. +..|+
T Consensus 42 ~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~--~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~ 118 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLL--PSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFY 118 (359)
T ss_dssp EEEECCC-CCSCEEEEECS-SCEEEEECCCC------------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEE
T ss_pred eEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCC--CcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEE
Confidence 3567899999999999865 4678888875 32211 11346788999999886 45688899988766 45789
Q ss_pred EEeccCCCChh
Q 044615 539 VYEYLEMGSLA 549 (571)
Q Consensus 539 v~e~~~~G~L~ 549 (571)
||||++|..+.
T Consensus 119 vme~v~G~~l~ 129 (359)
T 3dxp_A 119 IMEFVSGRVLW 129 (359)
T ss_dssp EEECCCCBCCC
T ss_pred EEEecCCeecC
Confidence 99999998774
No 424
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=93.86 E-value=0.097 Score=49.88 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=54.9
Q ss_pred CCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCC---CCcccEEEEEEeCCeeEEEE
Q 044615 464 FDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH---RNIVKFYGFCSHALHSFVVY 540 (571)
Q Consensus 464 ~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H---~niv~l~~~~~~~~~~~lv~ 540 (571)
......+|.|..+.||+....+|+.|.+|+-....... ...|.+|.+.|+.+.- --+.+++++ . ..++||
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~---~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~--~~~lv~ 89 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPAL---DGLFRAEALGLDWLGRSFGSPVPQVAGW--D--DRTLAM 89 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCC---TTHHHHHHHHHHHHTCSTTCCSCCEEEE--E--TTEEEE
T ss_pred eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcch---hhHHHHHHHHHHHHHhhCCCCcceEEec--c--CceEEE
Confidence 44466789999999999998899999999865433221 2457889988887732 134455443 2 247899
Q ss_pred eccCCCCh
Q 044615 541 EYLEMGSL 548 (571)
Q Consensus 541 e~~~~G~L 548 (571)
||++++..
T Consensus 90 e~l~~~~~ 97 (288)
T 3f7w_A 90 EWVDERPP 97 (288)
T ss_dssp ECCCCCCC
T ss_pred EeecccCC
Confidence 99987654
No 425
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=93.67 E-value=0.19 Score=48.44 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=59.6
Q ss_pred cCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcC---CCCcccEEEEEEeCCeeEEEEecc
Q 044615 467 GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR---HRNIVKFYGFCSHALHSFVVYEYL 543 (571)
Q Consensus 467 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~---H~niv~l~~~~~~~~~~~lv~e~~ 543 (571)
.+.++.|.+..+|+... ++..+++|.-... ....|.+|.+.|+.+. ...+.++++++...+..|+||||+
T Consensus 41 ~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~------~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l 113 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLIND-EVQTVFVKINERS------YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEAL 113 (312)
T ss_dssp EEEECCSSSSEEEEEES-SSCEEEEEEEEGG------GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECC
T ss_pred eEEeCCccceeeeEEEE-CCCeEEEEeCCcc------cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEec
Confidence 45789999999999886 4678889986532 2466889998888773 356888999888888899999999
Q ss_pred CCCCh
Q 044615 544 EMGSL 548 (571)
Q Consensus 544 ~~G~L 548 (571)
++..+
T Consensus 114 ~G~~~ 118 (312)
T 3jr1_A 114 NKSKN 118 (312)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98865
No 426
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=93.29 E-value=0.07 Score=53.56 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=49.8
Q ss_pred cCeeeccCcceEEEEEcC-CCCEEEEEEccCCCC--Cc--hHhHHHHHHHHHHHhhcCC--CCcc-cEEEEEEeCCeeEE
Q 044615 467 GHCIGNGGQGSVYKAKLP-TGEIVDVKKFHSPLP--DE--MACQQEFLNEVNALTKIRH--RNIV-KFYGFCSHALHSFV 538 (571)
Q Consensus 467 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~--~~~~~~~~~Ei~~l~~l~H--~niv-~l~~~~~~~~~~~l 538 (571)
.+.+|.|.++.||++... +++.++||...+... .. ....+++.+|.+++..+.+ |..+ +++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 457899999999999743 578899998754321 00 0113456788888887632 3344 55543 4455689
Q ss_pred EEeccCCCC
Q 044615 539 VYEYLEMGS 547 (571)
Q Consensus 539 v~e~~~~G~ 547 (571)
||||+++..
T Consensus 113 vmE~l~g~~ 121 (397)
T 2olc_A 113 VMEDLSHLK 121 (397)
T ss_dssp EECCCTTSE
T ss_pred EEEeCCCcc
Confidence 999998743
No 427
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=93.25 E-value=0.36 Score=45.21 Aligned_cols=78 Identities=10% Similarity=0.078 Sum_probs=57.3
Q ss_pred eeeccCcc-eEEEEEcC-CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcC-CCCcccEEEEEEeCCeeEEEEeccCC
Q 044615 469 CIGNGGQG-SVYKAKLP-TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR-HRNIVKFYGFCSHALHSFVVYEYLEM 545 (571)
Q Consensus 469 ~lg~G~~g-~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~~lv~e~~~~ 545 (571)
.+..|..| .||+.... .+..+.+|.-.. .....+.+|...|+.+. +--+.++++++.+.+..|+|||+++|
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~------~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G 104 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKG------SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPG 104 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEET------HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCS
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCC------CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCC
Confidence 45556655 58988744 567788998643 22456888999888773 22367888999999999999999999
Q ss_pred CChhhhh
Q 044615 546 GSLAMNL 552 (571)
Q Consensus 546 G~L~~~l 552 (571)
.++.+..
T Consensus 105 ~~~~~~~ 111 (272)
T 4gkh_A 105 KTAFQVL 111 (272)
T ss_dssp EEHHHHH
T ss_pred ccccccc
Confidence 8776544
No 428
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=92.61 E-value=0.26 Score=47.70 Aligned_cols=75 Identities=11% Similarity=0.127 Sum_probs=54.6
Q ss_pred CCCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCC----CCcccEEEEEEeCCeeEE
Q 044615 463 NFDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH----RNIVKFYGFCSHALHSFV 538 (571)
Q Consensus 463 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H----~niv~l~~~~~~~~~~~l 538 (571)
.....+.++.|....||+. +..+++|.... ......+.+|.+++..+.+ ..+.+++++ +..|+
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~-----~~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~l 104 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKR-----DSVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFN 104 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESS-----HHHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCc-----HHHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEE
Confidence 4556678999999999988 66788887632 1223568899999888866 223455444 56789
Q ss_pred EEeccCCCChhh
Q 044615 539 VYEYLEMGSLAM 550 (571)
Q Consensus 539 v~e~~~~G~L~~ 550 (571)
||||++|.++.+
T Consensus 105 vme~i~G~~l~~ 116 (320)
T 3r70_A 105 IMKYIKGERITY 116 (320)
T ss_dssp EEECCCCBCCCH
T ss_pred EEeecCCccccc
Confidence 999999988863
No 429
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=91.18 E-value=0.69 Score=45.56 Aligned_cols=77 Identities=8% Similarity=0.105 Sum_probs=57.4
Q ss_pred CCccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCC--cccEEEEEEeC-CeeEEEE
Q 044615 464 FDDGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRN--IVKFYGFCSHA-LHSFVVY 540 (571)
Q Consensus 464 ~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~n--iv~l~~~~~~~-~~~~lv~ 540 (571)
......++.|....+|+... ++..+++|..... ..+.+|+.++..+.... +.++++++... +..|+||
T Consensus 43 ~~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~--------~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~ 113 (362)
T 3ovc_A 43 VSDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA--------DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCIS 113 (362)
T ss_dssp CEEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC--------HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEE
T ss_pred CceEEECCCCCcceEEEEEE-CCcEEEEEeCCch--------hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEE
Confidence 33456789999999998875 5778899987432 24778998888886543 55777777654 5689999
Q ss_pred eccCCCChh
Q 044615 541 EYLEMGSLA 549 (571)
Q Consensus 541 e~~~~G~L~ 549 (571)
||++|..+.
T Consensus 114 e~l~G~~l~ 122 (362)
T 3ovc_A 114 RRAQGVTLQ 122 (362)
T ss_dssp ECCCSEETT
T ss_pred EecCCCCcc
Confidence 999986664
No 430
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=87.77 E-value=1.4 Score=42.21 Aligned_cols=75 Identities=16% Similarity=0.080 Sum_probs=54.7
Q ss_pred cCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCC---CcccEEEEEE-eCCeeEEEEec
Q 044615 467 GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHR---NIVKFYGFCS-HALHSFVVYEY 542 (571)
Q Consensus 467 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~---niv~l~~~~~-~~~~~~lv~e~ 542 (571)
...++.|....||+. |..+++|.-.. ......+.+|.+++..+.+. .+.+.+.++. ..+..|+||||
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~-----~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~ 94 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKS-----QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRK 94 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESS-----HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEEC
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCC-----chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEec
Confidence 456788888899987 56788888421 12346789999999998653 3566677664 34557899999
Q ss_pred cCCCChhh
Q 044615 543 LEMGSLAM 550 (571)
Q Consensus 543 ~~~G~L~~ 550 (571)
++|..+.+
T Consensus 95 i~G~~l~~ 102 (306)
T 3tdw_A 95 VQGQILGE 102 (306)
T ss_dssp CCSEECHH
T ss_pred cCCeECch
Confidence 99988765
No 431
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=87.36 E-value=0.066 Score=54.89 Aligned_cols=63 Identities=8% Similarity=-0.090 Sum_probs=18.1
Q ss_pred ccCeeeccCcceEEEEEcCC-CCEEEE------EEccCCCCCchHhHHHHHHHHHHHhhcCCCCcccEEEEEEe
Q 044615 466 DGHCIGNGGQGSVYKAKLPT-GEIVDV------KKFHSPLPDEMACQQEFLNEVNALTKIRHRNIVKFYGFCSH 532 (571)
Q Consensus 466 ~~~~lg~G~~g~V~~~~~~~-~~~vav------K~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 532 (571)
..+.+| ||.||+|.+.. ..+||| |........ ......|.+|..++...+|||+++.+++...
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~-~e~~~~~~rea~l~~~~~H~niv~~h~f~~~ 215 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVS-EKRLTSLVRRATLKENEQIPKYEKIHNFKVH 215 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC------------------------------------CBCCCEEEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCcccccccccc-ccccccccccccccccccccccCCCcceEEe
Confidence 345565 99999999643 467888 665432211 2234568899999999999999999887754
No 432
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=83.69 E-value=0.88 Score=43.44 Aligned_cols=75 Identities=19% Similarity=0.113 Sum_probs=51.3
Q ss_pred cCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcC-CCC--cccEEEEEEeCC---eeEEEE
Q 044615 467 GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR-HRN--IVKFYGFCSHAL---HSFVVY 540 (571)
Q Consensus 467 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~-H~n--iv~l~~~~~~~~---~~~lv~ 540 (571)
.+.++.|.+..||+.. ..+++|..... .....+.+|+++++.+. +.. +.+.++.....+ ..|+||
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~-----~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm 95 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS-----RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGF 95 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH-----HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEE
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc-----chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEE
Confidence 4568999999999753 56888985421 23467889999998873 333 344544433332 358999
Q ss_pred eccCCCChhh
Q 044615 541 EYLEMGSLAM 550 (571)
Q Consensus 541 e~~~~G~L~~ 550 (571)
||++|..+.+
T Consensus 96 ~~i~G~~l~~ 105 (304)
T 3sg8_A 96 TKIKGVPLTP 105 (304)
T ss_dssp ECCCCEECCH
T ss_pred cccCCeECCc
Confidence 9999988764
No 433
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=83.06 E-value=0.35 Score=47.45 Aligned_cols=83 Identities=5% Similarity=-0.032 Sum_probs=54.3
Q ss_pred Cee-eccCcceEEEEEcC-------CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCC---CCcccEEEEEEeC---
Q 044615 468 HCI-GNGGQGSVYKAKLP-------TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH---RNIVKFYGFCSHA--- 533 (571)
Q Consensus 468 ~~l-g~G~~g~V~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H---~niv~l~~~~~~~--- 533 (571)
+.+ +.|....+|+.... +++.+++|...............+.+|+++++.+.. -.+.++++++.+.
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~ 105 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL 105 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence 456 78888999988753 266788888654220000001346688888877632 3567788877655
Q ss_pred CeeEEEEeccCCCChhh
Q 044615 534 LHSFVVYEYLEMGSLAM 550 (571)
Q Consensus 534 ~~~~lv~e~~~~G~L~~ 550 (571)
+..|+||||++|..+.+
T Consensus 106 g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 106 GTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp SSCEEEEECCCCBCCCB
T ss_pred CCceEEEEecCCCChhh
Confidence 35689999999877654
No 434
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=75.76 E-value=8.2 Score=36.86 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=48.3
Q ss_pred CeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCC--cccEEEE-----EEeCCeeEEEE
Q 044615 468 HCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRN--IVKFYGF-----CSHALHSFVVY 540 (571)
Q Consensus 468 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~n--iv~l~~~-----~~~~~~~~lv~ 540 (571)
..++ |....||+....+|+.+++|........ .+.+..|..++..+.... +++++.. ....+..++||
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~~----~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~ 106 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPERWT----ADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVF 106 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTTTSC----HHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEE
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCCCCC----HHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEE
Confidence 3466 7888999887767778999998643211 345667777776653212 3333332 22345668899
Q ss_pred eccCCCCh
Q 044615 541 EYLEMGSL 548 (571)
Q Consensus 541 e~~~~G~L 548 (571)
||++|..+
T Consensus 107 ~~i~G~~~ 114 (328)
T 1zyl_A 107 PSVGGRQF 114 (328)
T ss_dssp ECCCCEEC
T ss_pred EecCCCCC
Confidence 99998543
No 435
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=74.70 E-value=4.8 Score=38.66 Aligned_cols=73 Identities=25% Similarity=0.390 Sum_probs=41.1
Q ss_pred CeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhc-----CCCCcccEE-E--EEEeCCeeEEE
Q 044615 468 HCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKI-----RHRNIVKFY-G--FCSHALHSFVV 539 (571)
Q Consensus 468 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l-----~H~niv~l~-~--~~~~~~~~~lv 539 (571)
..++.|..+.||+....+| .+++|+.... . .+...|..++..+ ..|.++... | +....+..++|
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~---~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l 109 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP----E---KKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVV 109 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC----H---HHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEE
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC----H---HHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEE
Confidence 3455677889999987555 4889998642 1 2233444444433 234444311 0 12346678999
Q ss_pred EeccCCCCh
Q 044615 540 YEYLEMGSL 548 (571)
Q Consensus 540 ~e~~~~G~L 548 (571)
|||++|..+
T Consensus 110 ~~~i~G~~~ 118 (346)
T 2q83_A 110 YDWIEGRPF 118 (346)
T ss_dssp EECCCCBCC
T ss_pred EEeecCccC
Confidence 999998654
No 436
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=71.86 E-value=3.2 Score=26.41 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=9.6
Q ss_pred eehhhhhHHHHHHHH-hhhhhhcccc
Q 044615 402 VFPLLGTVALLISLI-GLFFNFRQRK 426 (571)
Q Consensus 402 ~~~i~~~~~~~~~~~-~~~~~~~r~~ 426 (571)
+..+++++++++++. .+++++|||+
T Consensus 14 A~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 14 ATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 333344343333333 3334444443
No 437
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=70.86 E-value=8.7 Score=38.35 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=46.5
Q ss_pred cCeeeccCcceEEEEEcCCCCEEEEEEccCCCC--Cc----hHhHHHHHHHHHHHh-hcCCCCcccEEEEEEeCCeeEEE
Q 044615 467 GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLP--DE----MACQQEFLNEVNALT-KIRHRNIVKFYGFCSHALHSFVV 539 (571)
Q Consensus 467 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~----~~~~~~~~~Ei~~l~-~l~H~niv~l~~~~~~~~~~~lv 539 (571)
.+.+|.|..+.||++.. +++.++||...+... .. ......+..|+..+. ...+..+.+++.+. .+..++|
T Consensus 39 i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~lv 115 (420)
T 2pyw_A 39 IKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALIG 115 (420)
T ss_dssp EEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEEE
T ss_pred EEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEEE
Confidence 45689999999999965 467899995432111 00 012334555553332 22334566666665 5667899
Q ss_pred Eecc-CC
Q 044615 540 YEYL-EM 545 (571)
Q Consensus 540 ~e~~-~~ 545 (571)
|||+ ++
T Consensus 116 ~e~l~~g 122 (420)
T 2pyw_A 116 MRYLEPP 122 (420)
T ss_dssp ECCCCTT
T ss_pred EeecCCc
Confidence 9999 76
No 438
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=66.84 E-value=4.9 Score=25.53 Aligned_cols=9 Identities=11% Similarity=0.279 Sum_probs=3.6
Q ss_pred hhhhhcccc
Q 044615 418 LFFNFRQRK 426 (571)
Q Consensus 418 ~~~~~~r~~ 426 (571)
+++++|||+
T Consensus 30 ~~~~~RRRr 38 (44)
T 2l2t_A 30 FAVYVRRKS 38 (44)
T ss_dssp HHHHHHTTC
T ss_pred HHHHhhhhh
Confidence 334444433
No 439
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=65.95 E-value=11 Score=35.68 Aligned_cols=91 Identities=10% Similarity=0.062 Sum_probs=50.4
Q ss_pred ccHHHHHHHccCCCc-----cCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCC--cc
Q 044615 452 IVHEEIIRATNNFDD-----GHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRN--IV 524 (571)
Q Consensus 452 ~~~~~~~~~~~~~~~-----~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~n--iv 524 (571)
++.+++......|.. .+.++.|....+|+....+| .+++|....... .+.+..|+.++..+.... +.
T Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~~-----~~~l~~e~~~l~~L~~~g~~vP 80 (322)
T 2ppq_A 7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRVE-----KNDLPFFLGLMQHLAAKGLSCP 80 (322)
T ss_dssp CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC--------CCHHHHHHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCCC-----HHHHHHHHHHHHHHHHCCCCCC
Confidence 445555555555654 23466788889999886555 578998865211 123456777666553212 22
Q ss_pred cEEEE------EEeCCeeEEEEeccCCCCh
Q 044615 525 KFYGF------CSHALHSFVVYEYLEMGSL 548 (571)
Q Consensus 525 ~l~~~------~~~~~~~~lv~e~~~~G~L 548 (571)
+++.. ....+..+++|||++|..+
T Consensus 81 ~~~~~~~g~~~~~~~g~~~~l~~~l~G~~~ 110 (322)
T 2ppq_A 81 LPLPRKDGELLGELSGRPAALISFLEGMWL 110 (322)
T ss_dssp CBCCBTTCCSCEEETTEEEEEEECCCCBCC
T ss_pred cccCCCCCCEEEEECCEEEEEEEeCCCcCC
Confidence 22211 1224567899999998654
No 440
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=54.30 E-value=4.8 Score=25.53 Aligned_cols=9 Identities=11% Similarity=0.231 Sum_probs=3.6
Q ss_pred hhhhhcccc
Q 044615 418 LFFNFRQRK 426 (571)
Q Consensus 418 ~~~~~~r~~ 426 (571)
++++.|||+
T Consensus 31 ~~~~~RRR~ 39 (44)
T 2jwa_A 31 FGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHC
T ss_pred HHhheehhh
Confidence 334444443
No 441
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=50.61 E-value=16 Score=36.57 Aligned_cols=72 Identities=21% Similarity=0.318 Sum_probs=47.9
Q ss_pred CeeeccCcceEEEEEcCC--------CCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCc-ccEEEEEEeCCeeEE
Q 044615 468 HCIGNGGQGSVYKAKLPT--------GEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNI-VKFYGFCSHALHSFV 538 (571)
Q Consensus 468 ~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~ni-v~l~~~~~~~~~~~l 538 (571)
..++.|....+|++...+ +..+.+|+..... . .+.+.+|..++..+...++ .++++.+. + .+
T Consensus 79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~--~---~~~li~E~~~l~~L~~~g~~P~l~~~~~--~--g~ 149 (429)
T 1nw1_A 79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE--T---ESHLVAESVIFTLLSERHLGPKLYGIFS--G--GR 149 (429)
T ss_dssp EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC--C---HHHHHHHHHHHHHHHHTTSSSCEEEEET--T--EE
T ss_pred EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCC--c---HHHHHHHHHHHHHHHhCCCCCcEEEEeC--C--CE
Confidence 457788888999998642 4788899874321 1 1345579888887743334 56666553 2 38
Q ss_pred EEeccCCCCh
Q 044615 539 VYEYLEMGSL 548 (571)
Q Consensus 539 v~e~~~~G~L 548 (571)
||||++|.++
T Consensus 150 v~e~l~G~~l 159 (429)
T 1nw1_A 150 LEEYIPSRPL 159 (429)
T ss_dssp EECCCCEEEC
T ss_pred EEEEeCCccc
Confidence 9999986444
No 442
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=48.08 E-value=19 Score=35.40 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=43.0
Q ss_pred CeeeccCcceEEEEEcC--------CCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCC-CCcccEEEEEEeCCeeEE
Q 044615 468 HCIGNGGQGSVYKAKLP--------TGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH-RNIVKFYGFCSHALHSFV 538 (571)
Q Consensus 468 ~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H-~niv~l~~~~~~~~~~~l 538 (571)
+.+..|....+|++... +++.+.+|+.... .. ......+|.++++.+.- .-..++++++.. .+
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~---~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~ 127 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQ---GVDSLVLESVMFAILAERSLGPQLYGVFPE----GR 127 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----C---CHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cc---hHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----cc
Confidence 44666777789988854 2467888885321 11 23456689988877632 223566666532 28
Q ss_pred EEeccCCCChh
Q 044615 539 VYEYLEMGSLA 549 (571)
Q Consensus 539 v~e~~~~G~L~ 549 (571)
||||++|..+.
T Consensus 128 v~e~i~G~~l~ 138 (379)
T 3feg_A 128 LEQYIPSRPLK 138 (379)
T ss_dssp EEECCSEEECC
T ss_pred EEEEecCccCC
Confidence 99999986553
No 443
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=46.42 E-value=37 Score=32.27 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=40.4
Q ss_pred CeeeccCcce-EEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCC--CCcccEEEEEEeCCeeEEEEeccC
Q 044615 468 HCIGNGGQGS-VYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRH--RNIVKFYGFCSHALHSFVVYEYLE 544 (571)
Q Consensus 468 ~~lg~G~~g~-V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H--~niv~l~~~~~~~~~~~lv~e~~~ 544 (571)
+.++.|+... +|+....++..+++|....... +.+..|+.++..+.. -.+.+++.+..+.+ +++||++.
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~------~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~ 95 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEEG------GDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLG 95 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTTT------CCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCC
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCCC------ccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCC
Confidence 3455554444 6676654467777776544321 123356666655532 23556666543333 78999998
Q ss_pred CCChhhhhc
Q 044615 545 MGSLAMNLS 553 (571)
Q Consensus 545 ~G~L~~~l~ 553 (571)
+..+.+++.
T Consensus 96 ~~~l~~~l~ 104 (333)
T 3csv_A 96 DALFTEVIN 104 (333)
T ss_dssp SCBHHHHHH
T ss_pred CcchHHHhc
Confidence 877766654
No 444
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.05 E-value=47 Score=25.29 Aligned_cols=40 Identities=18% Similarity=0.066 Sum_probs=17.1
Q ss_pred ccccccCCCCCCEEEcccCcCcccccccccCCCCCCeeecc
Q 044615 113 IPLALGNLTNLVVLDLSTNKLSGSIPLSFANLTSLSILYLY 153 (571)
Q Consensus 113 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 153 (571)
...+|.++++|+.+.+-.+ ++.+-..+|.++.+|+.+.+.
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3344444444444444432 222333344444444444443
No 445
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=38.49 E-value=49 Score=31.61 Aligned_cols=64 Identities=8% Similarity=0.004 Sum_probs=39.7
Q ss_pred cceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcC---CCCcccEEEE------EEeCCeeEEEEeccCC
Q 044615 475 QGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIR---HRNIVKFYGF------CSHALHSFVVYEYLEM 545 (571)
Q Consensus 475 ~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~---H~niv~l~~~------~~~~~~~~lv~e~~~~ 545 (571)
...||+....+| .+++|+...... .+|+.++..+. -|.+++.+.. ....+..++||||++|
T Consensus 36 ~N~vy~v~~~~g-~~vLK~~~~~~~---------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~G 105 (339)
T 3i1a_A 36 NAFAYQADSESK-SYFIKLKYGYHD---------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIHA 105 (339)
T ss_dssp SCEEEEEECSSC-EEEEEEEECSSC---------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCCC
T ss_pred ccceEEEEeCCC-CEEEEEecCccc---------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccCC
Confidence 578999987667 899998765431 23444444331 1223343321 2335678999999998
Q ss_pred CCh
Q 044615 546 GSL 548 (571)
Q Consensus 546 G~L 548 (571)
..+
T Consensus 106 ~~~ 108 (339)
T 3i1a_A 106 PNG 108 (339)
T ss_dssp CBT
T ss_pred CcC
Confidence 765
No 446
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=37.45 E-value=35 Score=26.00 Aligned_cols=45 Identities=9% Similarity=-0.010 Sum_probs=27.7
Q ss_pred CCcccchhccCCCCCCEEEccCCcCccccccccccCCCCCEEECcC
Q 044615 302 FREEIPSQICSMQSLEKLNLSHNNLSGSIPRCFEEMHWLSCIDISY 347 (571)
Q Consensus 302 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~ 347 (571)
++.+....|.++.+|+.+.+-.+ ++.+-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44444556666777777766543 4445556777777777766654
No 447
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=36.87 E-value=31 Score=32.31 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=43.2
Q ss_pred ccCeeeccCcceEEEEEcCCCCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCc-ccEEEEEEeCCeeEEEEecc-
Q 044615 466 DGHCIGNGGQGSVYKAKLPTGEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNI-VKFYGFCSHALHSFVVYEYL- 543 (571)
Q Consensus 466 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~ni-v~l~~~~~~~~~~~lv~e~~- 543 (571)
-.+.++.|....+|+. ..+++|+........ ....+|+.+++.+....+ .+++++ ..+.-++|+||+
T Consensus 22 ~i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~~----~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i~ 90 (301)
T 3dxq_A 22 GPLERLGGLTNLVFRA-----GDLCLRIPGKGTEEY----INRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYIA 90 (301)
T ss_dssp SCEEEESCSSEEEEEE-----TTEEEEEECC----C----CCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECCT
T ss_pred ceeEcCCcccccccee-----eeEEEECCCCCccce----eCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeecC
Confidence 3677889999999998 557888875431111 112357777666533233 355544 343457899999
Q ss_pred CCCCh
Q 044615 544 EMGSL 548 (571)
Q Consensus 544 ~~G~L 548 (571)
+|-++
T Consensus 91 ~g~~l 95 (301)
T 3dxq_A 91 GAQTM 95 (301)
T ss_dssp TCEEC
T ss_pred CCccC
Confidence 55444
No 448
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=29.35 E-value=64 Score=32.46 Aligned_cols=73 Identities=16% Similarity=0.106 Sum_probs=46.0
Q ss_pred CeeeccCcceEEEEEcCC-CCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCCc-ccEEEEEEeCCeeEEEEeccCC
Q 044615 468 HCIGNGGQGSVYKAKLPT-GEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRNI-VKFYGFCSHALHSFVVYEYLEM 545 (571)
Q Consensus 468 ~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~ni-v~l~~~~~~~~~~~lv~e~~~~ 545 (571)
..|+.|-...+|++...+ +..+.+|+........ .+ -.+|..++..+...++ .++++.+ .+ ..||||++|
T Consensus 114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~-id---R~~E~~vl~~L~~~gl~P~ll~~~--~~--G~v~e~I~G 185 (458)
T 2qg7_A 114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEI-IN---REREKKISCILYNKNIAKKIYVFF--TN--GRIEEFMDG 185 (458)
T ss_dssp EEECC--CEEEEEEEETTTTEEEEEEEECC-CCSC-SC---HHHHHHHHHHHTTSSSBCCEEEEE--TT--EEEEECCCS
T ss_pred EEcCCCeEeEEEEEEECCCCceEEEEECCCChhhh-cC---HHHHHHHHHHHHhcCCCCCEEEEe--CC--eEEEEeeCC
Confidence 467788888999998654 4778888874322111 11 1478888888865555 4667666 22 259999997
Q ss_pred CCh
Q 044615 546 GSL 548 (571)
Q Consensus 546 G~L 548 (571)
.++
T Consensus 186 ~~l 188 (458)
T 2qg7_A 186 YAL 188 (458)
T ss_dssp EEC
T ss_pred ccC
Confidence 554
No 449
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=25.76 E-value=41 Score=32.50 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=41.8
Q ss_pred CeeeccCcceEEEEEcCC---------CCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCC-cccEEEEEEeCCeeE
Q 044615 468 HCIGNGGQGSVYKAKLPT---------GEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRN-IVKFYGFCSHALHSF 537 (571)
Q Consensus 468 ~~lg~G~~g~V~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~n-iv~l~~~~~~~~~~~ 537 (571)
..++.|....+|+....+ ++.+++|+..... .. .....+|.+++..+...+ ..++++.. . -+
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~-~~---~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~ 110 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHV-DE---LYNTISEFEVYKTMSKYKIAPQLLNTF--N--GG 110 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTG-GG---TSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCc-cc---eecHHHHHHHHHHHHhcCCCCceEEec--C--Cc
Confidence 456778788899988543 2678888865321 11 112346777777664333 34666544 2 26
Q ss_pred EEEeccCCCCh
Q 044615 538 VVYEYLEMGSL 548 (571)
Q Consensus 538 lv~e~~~~G~L 548 (571)
+||||++|..+
T Consensus 111 ~v~e~i~G~~l 121 (369)
T 3c5i_A 111 RIEEWLYGDPL 121 (369)
T ss_dssp EEEECCCSEEC
T ss_pred EEEEEecCCcC
Confidence 89999997544
No 450
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=20.55 E-value=1.2e+02 Score=30.16 Aligned_cols=73 Identities=8% Similarity=0.072 Sum_probs=44.5
Q ss_pred CeeeccCcceEEEEEcCC--------CCEEEEEEccCCCCCchHhHHHHHHHHHHHhhcCCCC-cccEEEEEEeCCeeEE
Q 044615 468 HCIGNGGQGSVYKAKLPT--------GEIVDVKKFHSPLPDEMACQQEFLNEVNALTKIRHRN-IVKFYGFCSHALHSFV 538 (571)
Q Consensus 468 ~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~~Ei~~l~~l~H~n-iv~l~~~~~~~~~~~l 538 (571)
+.+..|....+|+..... ++.+.+|+..... .... ...+|.++++.+.-.+ ..++++.+ .+ +.
T Consensus 76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~~i---dR~~E~~~l~~L~~~gi~P~l~~~~--~~--~~ 147 (424)
T 3mes_A 76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GKFY---DSKVELDVFRYLSNINIAPNIIADF--PE--GR 147 (424)
T ss_dssp EEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCC---CHHHHHHHHHHHHHTTSSCCEEEEE--TT--EE
T ss_pred EEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-chhc---CHHHHHHHHHHHHhcCCCCCEEEEc--CC--CE
Confidence 456667778899888542 5788888864321 1111 1246777777663222 34555533 22 68
Q ss_pred EEeccCCCCh
Q 044615 539 VYEYLEMGSL 548 (571)
Q Consensus 539 v~e~~~~G~L 548 (571)
||||++|..+
T Consensus 148 I~efI~G~~l 157 (424)
T 3mes_A 148 IEEFIDGEPL 157 (424)
T ss_dssp EEECCCSEEC
T ss_pred EEEEeCCccC
Confidence 9999998654
No 451
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=20.40 E-value=20 Score=21.49 Aligned_cols=8 Identities=13% Similarity=0.189 Sum_probs=3.4
Q ss_pred hhhhhccc
Q 044615 418 LFFNFRQR 425 (571)
Q Consensus 418 ~~~~~~r~ 425 (571)
+.++.|||
T Consensus 27 ~~~~iRRr 34 (35)
T 1iij_A 27 VGILIKRR 34 (35)
T ss_dssp TTHHHHHC
T ss_pred hheEEeec
Confidence 33444443
Done!