BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044617
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NP2|A Chain A, Crystal Structure Of Thermostable Beta-Glycosidase From
Thermophilic Eubacterium Thermus Nonproteolyticus Hg102
pdb|1NP2|B Chain B, Crystal Structure Of Thermostable Beta-Glycosidase From
Thermophilic Eubacterium Thermus Nonproteolyticus Hg102
Length = 436
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 21 NWVVTQMGLTHLFNQLRSTLPWNSLMDR---MMKELHSQGKTVEDIANCLRQCPLDSHVA 77
W V GL HL +L +PW + +L + VED R L++HV
Sbjct: 311 GWEVYPEGLYHLLKRLGREVPWPLYITENGAAYPDLWTGEAVVEDPE---RVAYLEAHVE 367
Query: 78 AAIKSAHSLGCDLK 91
AA++ A G DL+
Sbjct: 368 AALR-AREEGVDLR 380
>pdb|1UG6|A Chain A, Structure Of Beta-Glucosidase At Atomic Resolution From
Thermus Thermophilus Hb8
Length = 431
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 21 NWVVTQMGLTHLFNQLRSTLPWNSLMDR---MMKELHSQGKTVEDIANCLRQCPLDSHVA 77
W V GL HL +L +PW + +L + VED R L++HV
Sbjct: 311 GWEVYPEGLYHLLKRLGREVPWPLYVTENGAAYPDLWTGEAVVEDPE---RVAYLEAHVE 367
Query: 78 AAIKSAHSLGCDLK 91
AA++ A G DL+
Sbjct: 368 AALR-AREEGVDLR 380
>pdb|3ZJK|A Chain A, Crystal Structure Of Ttb-gly F401s Mutant
pdb|3ZJK|B Chain B, Crystal Structure Of Ttb-gly F401s Mutant
pdb|3ZJK|C Chain C, Crystal Structure Of Ttb-gly F401s Mutant
Length = 431
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 21 NWVVTQMGLTHLFNQLRSTLPWNSLMDR---MMKELHSQGKTVEDIANCLRQCPLDSHVA 77
W V GL HL +L +PW + +L + VED R L++HV
Sbjct: 311 GWEVYPEGLHHLLKRLGREVPWPLYVTENGAAYPDLWTGEAVVEDPE---RVAYLEAHVE 367
Query: 78 AAIKSAHSLGCDLK 91
AA++ A G DL+
Sbjct: 368 AALR-AREEGVDLR 380
>pdb|1WUH|L Chain L, Three-Dimensional Structure Of The Ni-A State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
pdb|1WUI|L Chain L, Ultra-High Resolution Structure Of The Ni-A State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
Length = 534
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 45 LMDRMMKELHSQGKTVEDIANCLRQCPLDS-HVAAAIKSAHSLGCDLKIVSDANQFYIET 103
L D ++ H D+ L+ P + VA++I + DLK V D + ++ET
Sbjct: 103 LHDHIVHFYHLHALDFVDVTAALKADPAKAAKVASSISPRKTTAADLKAVQDKLKTFVET 162
Query: 104 IMEHHGLLGCFSEIY 118
G LG F+ Y
Sbjct: 163 -----GQLGPFTNAY 172
>pdb|1WUJ|L Chain L, Three-Dimensional Structure Of The Ni-B State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
pdb|1WUK|L Chain L, High Resolution Structure Of The Oxidized State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
pdb|1WUL|L Chain L, High Resolution Structure Of The Reduced State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
Length = 534
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 45 LMDRMMKELHSQGKTVEDIANCLRQCPLDS-HVAAAIKSAHSLGCDLKIVSDANQFYIET 103
L D ++ H D+ L+ P + VA++I + DLK V D + ++ET
Sbjct: 103 LHDHIVHFYHLHALDFVDVTAALKADPAKAAKVASSISPRKTTAADLKAVQDKLKTFVET 162
Query: 104 IMEHHGLLGCFSEIY 118
G LG F+ Y
Sbjct: 163 -----GQLGPFTNAY 172
>pdb|1UBH|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBJ|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBK|L Chain L, Three-dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBL|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBM|L Chain L, Three-dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBO|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBR|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBT|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBU|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
Length = 534
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 45 LMDRMMKELHSQGKTVEDIANCLRQCPLDS-HVAAAIKSAHSLGCDLKIVSDANQFYIET 103
L D ++ H D+ L+ P + VA++I + DLK V D + ++ET
Sbjct: 103 LHDHIVHFYHLHALDFVDVTAALKADPAKAAKVASSISPRKTTAADLKAVQDKLKTFVET 162
Query: 104 IMEHHGLLGCFSEIY 118
G LG F+ Y
Sbjct: 163 -----GQLGPFTNAY 172
>pdb|1H2A|L Chain L, Single Crystals Of Hydrogenase From Desulfovibrio Vulgaris
Length = 567
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 45 LMDRMMKELHSQGKTVEDIANCLRQCPLDS-HVAAAIKSAHSLGCDLKIVSDANQFYIET 103
L D ++ H D+ L+ P + VA++I + DLK V D + ++ET
Sbjct: 121 LHDHIVHFYHLHALDFVDVTAALKADPAKAAKVASSISPRKTTAADLKAVQDKLKTFVET 180
Query: 104 IMEHHGLLGCFSEIY 118
G LG F+ Y
Sbjct: 181 -----GQLGPFTNAY 190
>pdb|1H2R|L Chain L, Three-Dimensional Structure Of Ni-Fe Hydrogenase From
Desulfivibrio Vulgaris Miyazaki F In The Reduced Form At
1.4 A Resolution
Length = 534
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 45 LMDRMMKELHSQGKTVEDIANCLRQCPLDS-HVAAAIKSAHSLGCDLKIVSDANQFYIET 103
L D ++ H D+ L+ P + VA++I + DLK V D + ++ET
Sbjct: 103 LHDHIVHFYHLHALDFVDVTAALKADPAKAAKVASSISPRKTTAADLKAVQDKLKTFVET 162
Query: 104 IMEHHGLLGCFSEIY 118
G LG F+ Y
Sbjct: 163 -----GQLGPFTNAY 172
>pdb|3T5V|A Chain A, Sac3:thp1:sem1 Complex
pdb|3T5V|D Chain D, Sac3:thp1:sem1 Complex
Length = 316
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 211 MLIKAKVHEWSSAEELKKILLHLIGAISIKEDVDSTVSSQPNSSECRSQTM 261
+++K+ V E+S +EL+++ LI I +DV S+ + PN +E R+ +
Sbjct: 74 IMVKSNV-EFSLQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRAYAL 123
>pdb|1LQS|L Chain L, Crystal Structure Of Human Cytomegalovirus Il-10 Bound To
Soluble Human Il-10r1
pdb|1LQS|M Chain M, Crystal Structure Of Human Cytomegalovirus Il-10 Bound To
Soluble Human Il-10r1
Length = 157
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 49 MMKELHSQGKTVEDIANCLRQCPL 72
+ ELHS T+E I +RQCPL
Sbjct: 88 LKTELHSMRSTLESIYKDMRQCPL 111
>pdb|3QQZ|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Yjik
Protein From Escherichia Coli Cft073
Length = 255
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 33 FNQLRSTLPWNSLMDRMMKELHSQGKTVEDIANCLRQCPLDSHVAAAIKSAHSLGCDLKI 92
FNQ ++TL S R ++E+ G+ + + + L ++ A A ++ I
Sbjct: 180 FNQQKNTLLVLSHESRALQEVTLVGEVIGEXSLTKGSRGLSHNIKQAEGVAXDASGNIYI 239
Query: 93 VSDANQFYIETIMEHH 108
VS+ N+FY T H
Sbjct: 240 VSEPNRFYRFTPQSSH 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,425,318
Number of Sequences: 62578
Number of extensions: 346569
Number of successful extensions: 738
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 736
Number of HSP's gapped (non-prelim): 15
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)