Query 044618
Match_columns 121
No_of_seqs 219 out of 1565
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 05:04:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158 Cytochrome P450 CYP3/C 100.0 1.7E-32 3.8E-37 201.1 10.3 110 1-115 387-499 (499)
2 PLN02971 tryptophan N-hydroxyl 100.0 8.4E-32 1.8E-36 201.1 10.7 120 1-121 420-540 (543)
3 PLN02394 trans-cinnamate 4-mon 100.0 2.7E-31 5.8E-36 196.6 11.5 115 1-115 386-502 (503)
4 PLN00110 flavonoid 3',5'-hydro 100.0 2E-31 4.4E-36 197.6 10.9 120 1-120 382-502 (504)
5 PLN02169 fatty acid (omega-1)- 100.0 5.2E-31 1.1E-35 195.3 11.2 111 1-114 388-499 (500)
6 PLN02738 carotene beta-ring hy 100.0 1.1E-30 2.3E-35 197.9 12.4 118 1-119 482-599 (633)
7 PTZ00404 cytochrome P450; Prov 100.0 9.7E-31 2.1E-35 192.8 10.8 106 1-114 377-482 (482)
8 PLN00168 Cytochrome P450; Prov 100.0 1.1E-30 2.3E-35 194.2 11.1 116 1-116 400-518 (519)
9 KOG0157 Cytochrome P450 CYP4/C 100.0 1.1E-30 2.3E-35 193.6 10.2 111 1-115 385-496 (497)
10 PLN03234 cytochrome P450 83B1; 100.0 1.5E-30 3.3E-35 192.5 10.6 114 1-114 381-498 (499)
11 PLN03112 cytochrome P450 famil 100.0 5.8E-30 1.3E-34 190.0 11.6 121 1-121 389-514 (514)
12 PLN03195 fatty acid omega-hydr 100.0 3.9E-30 8.6E-35 191.0 10.6 111 1-115 405-516 (516)
13 PF00067 p450: Cytochrome P450 100.0 2.4E-30 5.3E-35 186.5 8.7 108 1-111 355-463 (463)
14 PLN02183 ferulate 5-hydroxylas 100.0 5.3E-30 1.1E-34 190.5 10.7 114 1-115 396-512 (516)
15 KOG0156 Cytochrome P450 CYP2 s 100.0 4.5E-30 9.8E-35 189.2 10.0 110 1-115 379-488 (489)
16 PLN02687 flavonoid 3'-monooxyg 100.0 5.9E-30 1.3E-34 190.2 10.7 121 1-121 390-515 (517)
17 PLN02426 cytochrome P450, fami 100.0 9.6E-30 2.1E-34 188.7 11.3 113 1-115 387-500 (502)
18 PLN02290 cytokinin trans-hydro 100.0 1E-29 2.2E-34 188.8 10.5 109 1-116 407-516 (516)
19 PLN02936 epsilon-ring hydroxyl 100.0 2.7E-29 5.8E-34 185.7 11.4 115 1-117 370-484 (489)
20 PLN03018 homomethionine N-hydr 100.0 3.5E-29 7.5E-34 186.9 12.0 119 1-120 407-529 (534)
21 PLN02655 ent-kaurene oxidase 100.0 3.4E-29 7.5E-34 184.1 10.8 112 1-116 354-465 (466)
22 PLN03141 3-epi-6-deoxocathaste 100.0 2.2E-29 4.8E-34 184.5 9.5 105 1-116 347-451 (452)
23 PLN02500 cytochrome P450 90B1 100.0 2.8E-29 6.1E-34 185.5 9.8 109 1-113 376-488 (490)
24 PLN02966 cytochrome P450 83A1 100.0 6.7E-29 1.5E-33 184.0 10.3 111 1-115 384-498 (502)
25 KOG0159 Cytochrome P450 CYP11/ 100.0 4.6E-29 1E-33 181.5 9.0 110 1-115 409-518 (519)
26 PLN02302 ent-kaurenoic acid ox 100.0 1.2E-28 2.6E-33 181.7 10.2 107 1-116 383-489 (490)
27 PLN02774 brassinosteroid-6-oxi 100.0 1.3E-28 2.8E-33 181.0 10.1 104 1-113 359-462 (463)
28 PLN02196 abscisic acid 8'-hydr 100.0 9.8E-29 2.1E-33 181.6 9.1 104 1-114 359-462 (463)
29 PLN02987 Cytochrome P450, fami 100.0 2.6E-28 5.6E-33 179.9 10.7 110 1-117 362-471 (472)
30 KOG0684 Cytochrome P450 [Secon 99.9 1.3E-27 2.8E-32 171.3 8.9 114 1-115 370-485 (486)
31 COG2124 CypX Cytochrome P450 [ 99.9 2.9E-24 6.2E-29 156.2 8.1 99 1-114 312-410 (411)
32 PLN02648 allene oxide synthase 99.9 3E-23 6.5E-28 153.3 7.8 83 1-88 370-462 (480)
33 PF08492 SRP72: SRP72 RNA-bind 82.4 1.1 2.4E-05 24.0 1.7 10 29-38 43-52 (59)
34 PF09201 SRX: SRX; InterPro: 74.7 3.5 7.6E-05 26.0 2.4 23 58-80 18-40 (148)
35 PF12444 Sox_N: Sox developmen 57.4 7.1 0.00015 22.5 1.3 19 69-87 61-79 (84)
36 PRK14759 potassium-transportin 51.9 6.2 0.00013 17.9 0.4 6 29-34 24-29 (29)
37 PF09604 Potass_KdpF: F subuni 51.4 6.4 0.00014 17.2 0.3 6 29-34 20-25 (25)
38 KOG3506 40S ribosomal protein 48.9 7.6 0.00016 20.4 0.5 10 52-61 13-22 (56)
39 KOG2376 Signal recognition par 48.5 12 0.00026 29.4 1.6 21 18-38 570-590 (652)
40 cd04516 TBP_eukaryotes eukaryo 43.8 18 0.00038 23.8 1.7 57 27-85 29-87 (174)
41 PHA03162 hypothetical protein; 40.0 21 0.00046 22.3 1.5 24 54-77 2-25 (135)
42 PLN00062 TATA-box-binding prot 39.1 31 0.00068 22.8 2.3 55 27-83 29-85 (179)
43 PF02663 FmdE: FmdE, Molybdenu 39.1 27 0.00058 21.5 1.9 23 57-79 4-26 (131)
44 TIGR02115 potass_kdpF K+-trans 38.1 9.1 0.0002 16.9 -0.2 7 29-35 19-25 (26)
45 COG2101 SPT15 TATA-box binding 38.0 13 0.00028 24.5 0.4 36 27-64 35-70 (185)
46 PF07886 BA14K: BA14K-like pro 35.8 37 0.0008 15.6 1.6 16 46-61 16-31 (31)
47 KOG3302 TATA-box binding prote 35.5 16 0.00035 24.5 0.5 35 27-63 50-84 (200)
48 cd00652 TBP_TLF TATA box bindi 35.0 38 0.00083 22.2 2.2 56 27-85 29-87 (174)
49 cd04518 TBP_archaea archaeal T 32.9 14 0.00029 24.3 -0.1 56 27-85 29-87 (174)
50 PRK00394 transcription factor; 29.7 61 0.0013 21.4 2.5 34 27-62 28-61 (179)
51 KOG3262 H/ACA small nucleolar 25.9 26 0.00057 23.4 0.3 20 19-38 122-142 (215)
52 PTZ00218 40S ribosomal protein 25.4 30 0.00065 18.2 0.4 13 52-64 11-25 (54)
53 PF00352 TBP: Transcription fa 23.8 52 0.0011 18.6 1.2 34 28-63 32-65 (86)
54 PF14510 ABC_trans_N: ABC-tran 23.1 25 0.00054 19.9 -0.2 19 18-36 23-41 (85)
No 1
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=1.7e-32 Score=201.08 Aligned_cols=110 Identities=27% Similarity=0.549 Sum_probs=96.1
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHHh
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
|.||||+.|.++.+++||||++||||++|+||||.+++.+ ...+..|+|||.|+|.|+|++||++|+|+.|++||++
T Consensus 387 ~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~---~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~ 463 (499)
T KOG0158|consen 387 FVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEENNK---SRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRN 463 (499)
T ss_pred eEeCCCCEEEeecccccCCcccCCCcccCCCccCCCCccc---ccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhh
Confidence 5799999999999999999999999999999999987632 2368899999999999999999999999999999999
Q ss_pred ceeeCCCCCCCCCcccc---ceeeccCCCeEEEEEeCC
Q 044618 81 FDFTTPSDEPVDMGEAM---GLAIAKATPLEVILSPRL 115 (121)
Q Consensus 81 f~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~r~ 115 (121)
|+++..+. .+.. ... +.++.|+.++++.+++|.
T Consensus 464 f~~~~~~~-t~~~-~~~~~~~~~l~pk~gi~Lkl~~r~ 499 (499)
T KOG0158|consen 464 FSFEVCPT-TIIP-LEGDPKGFTLSPKGGIWLKLEPRD 499 (499)
T ss_pred CEEecCCc-ccCc-ccCCccceeeecCCceEEEEEeCC
Confidence 99999873 3222 233 677888899999999984
No 2
>PLN02971 tryptophan N-hydroxylase
Probab=99.97 E-value=8.4e-32 Score=201.14 Aligned_cols=120 Identities=31% Similarity=0.680 Sum_probs=99.6
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHHh
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
|.|||||.|+++.|++||||++|+||++|+||||+++..+......+..++|||.|+|.|+|++||++|+++++|+||++
T Consensus 420 ~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~ 499 (543)
T PLN02971 420 YHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQG 499 (543)
T ss_pred EEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999754221111245689999999999999999999999999999999
Q ss_pred ceeeCCCCC-CCCCccccceeeccCCCeEEEEEeCCCCCCCC
Q 044618 81 FDFTTPSDE-PVDMGEAMGLAIAKATPLEVILSPRLSASLYG 121 (121)
Q Consensus 81 f~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~r~~~~~~~ 121 (121)
|++++.++. .++.....+ ++....++.+.+++|..+++|+
T Consensus 500 f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 540 (543)
T PLN02971 500 FKWKLAGSETRVELMESSH-DMFLSKPLVMVGELRLSEDLYP 540 (543)
T ss_pred CEEEeCCCCCCcchhhhcC-cccccccceeeeeecCCccccc
Confidence 999987653 455555555 5534568999999998777774
No 3
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.97 E-value=2.7e-31 Score=196.64 Aligned_cols=115 Identities=35% Similarity=0.832 Sum_probs=95.0
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHHh
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
|.||+||.|.++.|++||||++|+||++|+||||++++...........++|||.|+|.|+|++||++|+++++|.|+++
T Consensus 386 ~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~ 465 (503)
T PLN02394 386 YDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQN 465 (503)
T ss_pred EEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999754221112245689999999999999999999999999999999
Q ss_pred ceeeCCCCC-CCCCccccc-eeeccCCCeEEEEEeCC
Q 044618 81 FDFTTPSDE-PVDMGEAMG-LAIAKATPLEVILSPRL 115 (121)
Q Consensus 81 f~~~~~~~~-~~~~~~~~~-~~~~~~~~~~v~~~~r~ 115 (121)
|++++.++. ..+.....+ +.+....++.+++.+|+
T Consensus 466 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 502 (503)
T PLN02394 466 FELLPPPGQSKIDVSEKGGQFSLHIAKHSTVVFKPRS 502 (503)
T ss_pred ceeEeCCCCCcCccccccCceeeccCCCceEEeecCC
Confidence 999987764 344444443 45545569999999996
No 4
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.97 E-value=2e-31 Score=197.64 Aligned_cols=120 Identities=49% Similarity=0.971 Sum_probs=99.8
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCc-cccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHH
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDI-DVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVH 79 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~-~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~ 79 (121)
|.|||||.|.++.+++|+||++|+||++|+||||+++.... ........++|||.|+|.|+|++||++|+++++|.|++
T Consensus 382 ~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~ 461 (504)
T PLN00110 382 YYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVH 461 (504)
T ss_pred EEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999653211 11112357999999999999999999999999999999
Q ss_pred hceeeCCCCCCCCCccccceeeccCCCeEEEEEeCCCCCCC
Q 044618 80 AFDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPRLSASLY 120 (121)
Q Consensus 80 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~~~~ 120 (121)
+|++++.++.........+.++.+..++.+.+++|...+.|
T Consensus 462 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 502 (504)
T PLN00110 462 SFDWKLPDGVELNMDEAFGLALQKAVPLSAMVTPRLHQSAY 502 (504)
T ss_pred hceeecCCCCccCcccccccccccCCCceEeeccCCCchhc
Confidence 99999977644333334566777888999999999877766
No 5
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.97 E-value=5.2e-31 Score=195.29 Aligned_cols=111 Identities=20% Similarity=0.466 Sum_probs=93.9
Q ss_pred CccCCCCEEeechhhhccCCCCC-CCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHH
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVW-EEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVH 79 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~ 79 (121)
|.|||||.|.+++|++||||++| +||++|+||||++++.... ...+..|+|||+|+|.|+|++||++|++++++.|++
T Consensus 388 ~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~-~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~ 466 (500)
T PLN02169 388 HKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLR-HEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIK 466 (500)
T ss_pred EEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCcc-CCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999 8999999999997542211 113678999999999999999999999999999999
Q ss_pred hceeeCCCCCCCCCccccceeeccCCCeEEEEEeC
Q 044618 80 AFDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPR 114 (121)
Q Consensus 80 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 114 (121)
+|++++.++..+ ....+.++.+..++.+++++|
T Consensus 467 ~f~~~~~~~~~~--~~~~~~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 467 NYDFKVIEGHKI--EAIPSILLRMKHGLKVTVTKK 499 (500)
T ss_pred HCEEEEcCCCCc--ccccceEEecCCCEEEEEEeC
Confidence 999998765433 233456777888999999887
No 6
>PLN02738 carotene beta-ring hydroxylase
Probab=99.97 E-value=1.1e-30 Score=197.86 Aligned_cols=118 Identities=26% Similarity=0.560 Sum_probs=96.5
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHHh
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
|.|||||.|.++.|.+||||++|+||++|+||||+..............++|||.|+|.|+|++||++|++++||.|+++
T Consensus 482 y~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~LA~Llr~ 561 (633)
T PLN02738 482 YPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAMLVRR 561 (633)
T ss_pred EEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999999999998542111112246689999999999999999999999999999999
Q ss_pred ceeeCCCCCCCCCccccceeeccCCCeEEEEEeCCCCCC
Q 044618 81 FDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPRLSASL 119 (121)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~~~ 119 (121)
|++++..+.. +.....+.++.+..++.+++++|....+
T Consensus 562 F~~el~~~~~-~~~~~~~~~~~p~~~l~v~l~~R~~~~~ 599 (633)
T PLN02738 562 FDFQLAPGAP-PVKMTTGATIHTTEGLKMTVTRRTKPPV 599 (633)
T ss_pred CeeEeCCCCC-CcccccceEEeeCCCcEEEEEECCCCCC
Confidence 9999976532 2222335566778899999999976443
No 7
>PTZ00404 cytochrome P450; Provisional
Probab=99.97 E-value=9.7e-31 Score=192.82 Aligned_cols=106 Identities=25% Similarity=0.541 Sum_probs=90.9
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHHh
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
|.|||||.|.++.+++||||++|+||++|+||||++.. ....++|||.|+|.|+|++||++|++++++.|+++
T Consensus 377 ~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~-------~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~ 449 (482)
T PTZ00404 377 HFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD-------SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILN 449 (482)
T ss_pred eEECCCCEEEeeHHHhhCCccccCCccccCccccCCCC-------CCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999743 35689999999999999999999999999999999
Q ss_pred ceeeCCCCCCCCCccccceeeccCCCeEEEEEeC
Q 044618 81 FDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPR 114 (121)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 114 (121)
|++++.++++.......++++. ..++.+.+++|
T Consensus 450 f~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~R 482 (482)
T PTZ00404 450 FKLKSIDGKKIDETEEYGLTLK-PNKFKVLLEKR 482 (482)
T ss_pred cEEecCCCCCCCcccccceeec-CCCceeeeecC
Confidence 9999876554333334456565 45789988876
No 8
>PLN00168 Cytochrome P450; Provisional
Probab=99.97 E-value=1.1e-30 Score=194.25 Aligned_cols=116 Identities=29% Similarity=0.613 Sum_probs=94.8
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCc--c-ccCCccceeeccCCCCCCCchHHHHHHHHHHHHHH
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDI--D-VRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASL 77 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~--~-~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~l 77 (121)
|.|||||.|.++.+++||||++|+||++|+||||+++.... . .......++|||.|+|.|+|++||++|++++++.|
T Consensus 400 ~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~l 479 (519)
T PLN00168 400 YLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANM 479 (519)
T ss_pred EEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999743211 1 11134689999999999999999999999999999
Q ss_pred HHhceeeCCCCCCCCCccccceeeccCCCeEEEEEeCCC
Q 044618 78 VHAFDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPRLS 116 (121)
Q Consensus 78 l~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 116 (121)
+++|++++.++...+.....+++..+..++.+.+++|+.
T Consensus 480 l~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ 518 (519)
T PLN00168 480 VREFEWKEVPGDEVDFAEKREFTTVMAKPLRARLVPRRT 518 (519)
T ss_pred HHHccceeCCCCcCChhhhceeEEeecCCcEEEEEeccC
Confidence 999999997654434333334556667789999999874
No 9
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=193.58 Aligned_cols=111 Identities=30% Similarity=0.623 Sum_probs=97.9
Q ss_pred CccCCCCEEeechhhhccCCCCCC-CCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHH
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWE-EPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVH 79 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~-~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~ 79 (121)
|.||||+.|.++++++|||+.+|+ ||++|+||||+++.... ..+++.|+|||+|+|.|+|++||++||+++++.|++
T Consensus 385 ~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~--~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~ 462 (497)
T KOG0157|consen 385 YTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKA--KRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLR 462 (497)
T ss_pred cEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcC--CCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999996 99999999999764322 235789999999999999999999999999999999
Q ss_pred hceeeCCCCCCCCCccccceeeccCCCeEEEEEeCC
Q 044618 80 AFDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPRL 115 (121)
Q Consensus 80 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 115 (121)
+|++++..+.. .......++.+..++.|++++|.
T Consensus 463 ~f~~~~~~~~~--~~~~~~~~l~~~~gl~v~~~~r~ 496 (497)
T KOG0157|consen 463 RFRIEPVGGDK--PKPVPELTLRPKNGLKVKLRPRG 496 (497)
T ss_pred heEEEecCCCC--ceeeeEEEEEecCCeEEEEEeCC
Confidence 99999887643 44556788899999999999986
No 10
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.97 E-value=1.5e-30 Score=192.48 Aligned_cols=114 Identities=43% Similarity=0.867 Sum_probs=93.4
Q ss_pred CccCCCCEEeechhhhccCCCCC-CCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHH
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVW-EEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVH 79 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~ 79 (121)
|.|||||.|.++.+.+||||++| +||++|+||||+++.+..........++|||.|+|.|+|+++|++|+++++|.|++
T Consensus 381 ~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~ 460 (499)
T PLN03234 381 YDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLY 460 (499)
T ss_pred EEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999 89999999999976432222234678999999999999999999999999999999
Q ss_pred hceeeCCCCC---CCCCccccceeeccCCCeEEEEEeC
Q 044618 80 AFDFTTPSDE---PVDMGEAMGLAIAKATPLEVILSPR 114 (121)
Q Consensus 80 ~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~r 114 (121)
+|++++.++. .+......++...++..+.+.+++|
T Consensus 461 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 461 KFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH 498 (499)
T ss_pred heeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence 9999998752 2333345566666777777776665
No 11
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.97 E-value=5.8e-30 Score=190.00 Aligned_cols=121 Identities=36% Similarity=0.806 Sum_probs=98.7
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCc-c-ccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHH
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDI-D-VRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLV 78 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~-~-~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll 78 (121)
|.|||||.|.++.+++||||++|+||++|+||||+.+.... . .......++|||.|+|.|+|++||++|++++++.||
T Consensus 389 ~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll 468 (514)
T PLN03112 389 YYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLF 468 (514)
T ss_pred EEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999987543111 1 112356899999999999999999999999999999
Q ss_pred HhceeeCCCCC---CCCCccccceeeccCCCeEEEEEeCCCCCCCC
Q 044618 79 HAFDFTTPSDE---PVDMGEAMGLAIAKATPLEVILSPRLSASLYG 121 (121)
Q Consensus 79 ~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~r~~~~~~~ 121 (121)
++|++++.++. .+......++.+.+..++.+.+++|.....||
T Consensus 469 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 514 (514)
T PLN03112 469 HCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVATPRLAPHLYG 514 (514)
T ss_pred HheeeecCCCCCcccCCCccccCcccccCCCeEEEeecCCcccccC
Confidence 99999987553 22333334566666779999999999888786
No 12
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.97 E-value=3.9e-30 Score=191.02 Aligned_cols=111 Identities=24% Similarity=0.380 Sum_probs=92.2
Q ss_pred CccCCCCEEeechhhhccCCCCC-CCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHH
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVW-EEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVH 79 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~ 79 (121)
|.|||||.|.++.+++||||++| +||++|+||||++++.. ....+..++|||.|+|.|+|++||++|++++++.|++
T Consensus 405 ~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~--~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~ 482 (516)
T PLN03195 405 TKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVF--QNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCR 482 (516)
T ss_pred cEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCc--CCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999 99999999999964311 1124567999999999999999999999999999999
Q ss_pred hceeeCCCCCCCCCccccceeeccCCCeEEEEEeCC
Q 044618 80 AFDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPRL 115 (121)
Q Consensus 80 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 115 (121)
+|++++.++.+. ......++.+..++.|++++|+
T Consensus 483 ~f~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~r~ 516 (516)
T PLN03195 483 FFKFQLVPGHPV--KYRMMTILSMANGLKVTVSRRS 516 (516)
T ss_pred hceeEecCCCcc--eeeeeeEEecCCCEEEEEEeCC
Confidence 999998764432 2233345667889999999884
No 13
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.97 E-value=2.4e-30 Score=186.50 Aligned_cols=108 Identities=33% Similarity=0.689 Sum_probs=85.6
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHHh
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
|.|||||.|.++.+++|+||++|+||++|+||||++.+. ........++|||.|+|.|+|++||++|+++++|.||++
T Consensus 355 ~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~--~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 432 (463)
T PF00067_consen 355 YFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERG--ISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRR 432 (463)
T ss_dssp EEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTS--TBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccchHHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999998763 112367889999999999999999999999999999999
Q ss_pred ceeeCCCCCCCCCcccc-ceeeccCCCeEEEE
Q 044618 81 FDFTTPSDEPVDMGEAM-GLAIAKATPLEVIL 111 (121)
Q Consensus 81 f~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~ 111 (121)
|++++.++......... ++++ ++.++.|.|
T Consensus 433 f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 463 (463)
T PF00067_consen 433 FDFELVPGSEPEPQEQQNGFLL-PPKPLKVKF 463 (463)
T ss_dssp EEEEESTTSSGGEEECSCSSSE-EESSSEEEE
T ss_pred CEEEECCCCCCCCccccCceEe-eCCCcEEeC
Confidence 99999765443322222 3343 445677654
No 14
>PLN02183 ferulate 5-hydroxylase
Probab=99.97 E-value=5.3e-30 Score=190.45 Aligned_cols=114 Identities=41% Similarity=0.834 Sum_probs=92.0
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHHh
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
|.|||||.|.++.+++||||++|+||++|+||||++++... .......++|||.|+|.|+|++||++|+++++|.|+++
T Consensus 396 ~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~-~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~ 474 (516)
T PLN02183 396 YFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPD-FKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHC 474 (516)
T ss_pred EEECCCCEEEEehhhhcCCccccCCccccCchhhCCCCCcc-ccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHhe
Confidence 57999999999999999999999999999999999754211 11245689999999999999999999999999999999
Q ss_pred ceeeCCCCCC---CCCccccceeeccCCCeEEEEEeCC
Q 044618 81 FDFTTPSDEP---VDMGEAMGLAIAKATPLEVILSPRL 115 (121)
Q Consensus 81 f~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~r~ 115 (121)
|++++.++.. .+....++.+..+..++.+.+++|.
T Consensus 475 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 512 (516)
T PLN02183 475 FTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYRL 512 (516)
T ss_pred eEEEcCCCCCCCCCChhhccccccccCCCcEEEeecCC
Confidence 9999877532 2222233444445557888888884
No 15
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=4.5e-30 Score=189.23 Aligned_cols=110 Identities=51% Similarity=0.983 Sum_probs=95.1
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHHh
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
|.|||||.|+++.|++|+||++|+||++|+||||++++ +.......++|||.|+|.|||..+|.+++.++++.|+++
T Consensus 379 y~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~---d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~ 455 (489)
T KOG0156|consen 379 YDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSN---DGKGLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQR 455 (489)
T ss_pred EEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCc---cccCCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHhe
Confidence 78999999999999999999999999999999999974 112257899999999999999999999999999999999
Q ss_pred ceeeCCCCCCCCCccccceeeccCCCeEEEEEeCC
Q 044618 81 FDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPRL 115 (121)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 115 (121)
|+|++..+ .++.... +.++....++.+...+|.
T Consensus 456 F~w~~~~~-~~d~~e~-~~~~~~~~pl~~~~~~r~ 488 (489)
T KOG0156|consen 456 FDWKLPGG-KVDMEEA-GLTLKKKKPLKAVPVPRL 488 (489)
T ss_pred eeeecCCC-CCCCccc-ccceecCCcceeeeecCC
Confidence 99999987 5566555 455666678887777664
No 16
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.96 E-value=5.9e-30 Score=190.23 Aligned_cols=121 Identities=49% Similarity=0.958 Sum_probs=96.7
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCcc--ccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHH
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDID--VRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLV 78 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll 78 (121)
|.||+||.|.++.+++|+||++|+||++|+||||++++.... ....+..++|||.|+|.|+|++||++|+++++|.||
T Consensus 390 ~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll 469 (517)
T PLN02687 390 YHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLV 469 (517)
T ss_pred EEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999997542111 112356899999999999999999999999999999
Q ss_pred HhceeeCCCCCC---CCCccccceeeccCCCeEEEEEeCCCCCCCC
Q 044618 79 HAFDFTTPSDEP---VDMGEAMGLAIAKATPLEVILSPRLSASLYG 121 (121)
Q Consensus 79 ~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~r~~~~~~~ 121 (121)
++|++++.++.. ++.....+....+..++.+++++|.-.+.||
T Consensus 470 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~ 515 (517)
T PLN02687 470 HAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPRPRLLPSAYG 515 (517)
T ss_pred HhcceecCCCCCcccCCcccccceeeecCCCeEEeeccCCChhhcc
Confidence 999999986532 2222233455556668999999996346665
No 17
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.96 E-value=9.6e-30 Score=188.68 Aligned_cols=113 Identities=23% Similarity=0.348 Sum_probs=93.8
Q ss_pred CccCCCCEEeechhhhccCCCCC-CCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHH
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVW-EEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVH 79 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~ 79 (121)
|.|||||.|.++.+++||||++| +||++|+||||+++.. .....+..++|||.|+|.|+|+++|++|++++++.|++
T Consensus 387 ~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~--~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~ 464 (502)
T PLN02426 387 TFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGV--FVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVR 464 (502)
T ss_pred cEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCC--cCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999 9999999999997431 11124567999999999999999999999999999999
Q ss_pred hceeeCCCCCCCCCccccceeeccCCCeEEEEEeCC
Q 044618 80 AFDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPRL 115 (121)
Q Consensus 80 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 115 (121)
+|++++.++.........+.++.+..++.|++++|.
T Consensus 465 ~f~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~r~ 500 (502)
T PLN02426 465 RFDIEVVGRSNRAPRFAPGLTATVRGGLPVRVRERV 500 (502)
T ss_pred HceEEEecCCCCCCcccceeEEecCCCEEEEEEEcc
Confidence 999998653321222334567788889999999885
No 18
>PLN02290 cytokinin trans-hydroxylase
Probab=99.96 E-value=1e-29 Score=188.81 Aligned_cols=109 Identities=25% Similarity=0.507 Sum_probs=93.0
Q ss_pred CccCCCCEEeechhhhccCCCCC-CCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHH
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVW-EEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVH 79 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~ 79 (121)
|.|||||.|.++.+++||||++| +||++|+||||++... .....++|||.|+|.|+|++||++|++++++.|++
T Consensus 407 ~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~-----~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~ 481 (516)
T PLN02290 407 LHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPF-----APGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLIS 481 (516)
T ss_pred EEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCCC-----CCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999 8999999999995321 13457999999999999999999999999999999
Q ss_pred hceeeCCCCCCCCCccccceeeccCCCeEEEEEeCCC
Q 044618 80 AFDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPRLS 116 (121)
Q Consensus 80 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 116 (121)
+|++++.++.. ......+++.|..++.+++++|++
T Consensus 482 ~f~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~ 516 (516)
T PLN02290 482 KFSFTISDNYR--HAPVVVLTIKPKYGVQVCLKPLNP 516 (516)
T ss_pred hceEeeCCCcc--cCccceeeecCCCCCeEEEEeCCC
Confidence 99999876532 122235677888899999999874
No 19
>PLN02936 epsilon-ring hydroxylase
Probab=99.96 E-value=2.7e-29 Score=185.69 Aligned_cols=115 Identities=30% Similarity=0.520 Sum_probs=94.8
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHHh
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
|+||+|+.|.++.+++||||++|+||++|+||||+.++........+..++|||.|+|.|+|++||++|++++++.|+++
T Consensus 370 ~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~ 449 (489)
T PLN02936 370 YKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQR 449 (489)
T ss_pred eEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999654211111234589999999999999999999999999999999
Q ss_pred ceeeCCCCCCCCCccccceeeccCCCeEEEEEeCCCC
Q 044618 81 FDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPRLSA 117 (121)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~ 117 (121)
|++++++++++.. ..+++..+..++.|++++|...
T Consensus 450 f~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~R~~~ 484 (489)
T PLN02936 450 LDLELVPDQDIVM--TTGATIHTTNGLYMTVSRRRVP 484 (489)
T ss_pred CeEEecCCCccce--ecceEEeeCCCeEEEEEeeeCC
Confidence 9999987654322 2345566778999999988654
No 20
>PLN03018 homomethionine N-hydroxylase
Probab=99.96 E-value=3.5e-29 Score=186.85 Aligned_cols=119 Identities=28% Similarity=0.602 Sum_probs=94.7
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCcc---ccCCccceeeccCCCCCCCchHHHHHHHHHHHHHH
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDID---VRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASL 77 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~---~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~l 77 (121)
|.|||||.|.++.+++|+||++|+||++|+||||++++.... ....+..++|||.|+|.|+|++||.+|++++++.|
T Consensus 407 ~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~l 486 (534)
T PLN03018 407 YFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARF 486 (534)
T ss_pred EEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999997542110 01245689999999999999999999999999999
Q ss_pred HHhceeeCCCCC-CCCCccccceeeccCCCeEEEEEeCCCCCCC
Q 044618 78 VHAFDFTTPSDE-PVDMGEAMGLAIAKATPLEVILSPRLSASLY 120 (121)
Q Consensus 78 l~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~r~~~~~~ 120 (121)
+++|++++.++. .++.....+.+.. ..++.+.+++|..+..+
T Consensus 487 l~~f~~~~~~~~~~~~~~~~~~~~~~-p~~~~v~~~~R~~~~~~ 529 (534)
T PLN03018 487 LQGFNWKLHQDFGPLSLEEDDASLLM-AKPLLLSVEPRLAPNLY 529 (534)
T ss_pred HHhceEEeCCCCCCCCccccccceec-CCCeEEEEEeccccccc
Confidence 999999987653 3333223344443 46999999999654444
No 21
>PLN02655 ent-kaurene oxidase
Probab=99.96 E-value=3.4e-29 Score=184.12 Aligned_cols=112 Identities=29% Similarity=0.621 Sum_probs=94.5
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHHh
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
|.|||||.|+++.+++||||++|+||++|+||||++++.. ......++|||.|+|.|+|++||..|++++++.||++
T Consensus 354 ~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~---~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~ 430 (466)
T PLN02655 354 YDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYE---SADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQE 430 (466)
T ss_pred EEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCcc---cCCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999975421 1134689999999999999999999999999999999
Q ss_pred ceeeCCCCCCCCCccccceeeccCCCeEEEEEeCCC
Q 044618 81 FDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPRLS 116 (121)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 116 (121)
|++++.++.. ......++++.+..++.+.+++|..
T Consensus 431 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~ 465 (466)
T PLN02655 431 FEWRLREGDE-EKEDTVQLTTQKLHPLHAHLKPRGS 465 (466)
T ss_pred eEEEeCCCCc-cccchhheeEeecCCcEEEEeecCC
Confidence 9999976532 2223446667777899999998864
No 22
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.96 E-value=2.2e-29 Score=184.48 Aligned_cols=105 Identities=24% Similarity=0.424 Sum_probs=91.3
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHHh
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
|.||||+.|.++.+++|+|+++|+||++|+||||++++. .+..|+|||.|+|.|+|++||.+|+++++|.|+++
T Consensus 347 ~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~------~~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~ 420 (452)
T PLN03141 347 YLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDM------NNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTR 420 (452)
T ss_pred EEECCCCEEEEehHhccCCchhcCCccccCcccccCCCC------CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999997531 35689999999999999999999999999999999
Q ss_pred ceeeCCCCCCCCCccccceeeccCCCeEEEEEeCCC
Q 044618 81 FDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPRLS 116 (121)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 116 (121)
|++++.++... ...++.|..++.|++++|..
T Consensus 421 f~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 451 (452)
T PLN03141 421 FRWVAEEDTIV-----NFPTVRMKRKLPIWVTRIDD 451 (452)
T ss_pred CeeecCCCCee-----ecccccCCCCceEEEEeCCC
Confidence 99998765321 12356777899999999953
No 23
>PLN02500 cytochrome P450 90B1
Probab=99.96 E-value=2.8e-29 Score=185.51 Aligned_cols=109 Identities=18% Similarity=0.386 Sum_probs=87.2
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccc----cCCccceeeccCCCCCCCchHHHHHHHHHHHHH
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDV----RGQNFELIPFGSGRRMCPAVSLGLQVVQLTLAS 76 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~----~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ 76 (121)
|.|||||.|.++.+++||||++|+||++|+||||++++..... ...+..++|||.|+|.|+|+++|++|+++++|.
T Consensus 376 ~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ 455 (490)
T PLN02500 376 YDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHH 455 (490)
T ss_pred EEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999975421110 014568999999999999999999999999999
Q ss_pred HHHhceeeCCCCCCCCCccccceeeccCCCeEEEEEe
Q 044618 77 LVHAFDFTTPSDEPVDMGEAMGLAIAKATPLEVILSP 113 (121)
Q Consensus 77 ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (121)
|+++|++++.++... .. ..... +..++.|++++
T Consensus 456 ll~~f~~~~~~~~~~-~~--~~~~~-~~~~l~~~~~~ 488 (490)
T PLN02500 456 LVLNFNWELAEADQA-FA--FPFVD-FPKGLPIRVRR 488 (490)
T ss_pred HHhccEEEEcCCCcc-ee--ccccc-CCCCceEEEEe
Confidence 999999998765431 11 12222 34588888765
No 24
>PLN02966 cytochrome P450 83A1
Probab=99.96 E-value=6.7e-29 Score=183.99 Aligned_cols=111 Identities=43% Similarity=0.877 Sum_probs=88.0
Q ss_pred CccCCCCEEeechhhhccCCCCC-CCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHH
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVW-EEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVH 79 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~ 79 (121)
|.|||||.|.++.+++||||++| +||++|+||||++++.+ .......|+|||.|+|.|+|++||++|+++++|.||+
T Consensus 384 ~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~--~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~ 461 (502)
T PLN02966 384 YDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVD--FKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLL 461 (502)
T ss_pred EEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCC--cCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999 99999999999975421 1124568999999999999999999999999999999
Q ss_pred hceeeCCCCCC---CCCccccceeeccCCCeEEEEEeCC
Q 044618 80 AFDFTTPSDEP---VDMGEAMGLAIAKATPLEVILSPRL 115 (121)
Q Consensus 80 ~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~r~ 115 (121)
+|++++.++.. ++.+...++...+...+ +++.|+
T Consensus 462 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 498 (502)
T PLN02966 462 NFNFKLPNGMKPDDINMDVMTGLAMHKSQHL--KLVPEK 498 (502)
T ss_pred hceeeCCCCCCcccCCcccccCeeeccCCCe--EEEEEe
Confidence 99999987642 22233445555343344 455554
No 25
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=4.6e-29 Score=181.47 Aligned_cols=110 Identities=30% Similarity=0.540 Sum_probs=98.9
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHHh
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
|.|||||.|.++.+.+.+||++|++|++|+|||||+++. ...+++.++|||.|+|+|+|+++|.+||.+.||+|+++
T Consensus 409 Y~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~---~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~ 485 (519)
T KOG0159|consen 409 YHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPST---KTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRN 485 (519)
T ss_pred ceecCCCeEEEeehhhccChhhCCCccccChhhhccccc---CCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999998762 33478999999999999999999999999999999999
Q ss_pred ceeeCCCCCCCCCccccceeeccCCCeEEEEEeCC
Q 044618 81 FDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPRL 115 (121)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 115 (121)
|+++..... +......+++.|..++.+.|++|.
T Consensus 486 f~V~~~~~~--pv~~~~~~il~P~~~l~f~f~~r~ 518 (519)
T KOG0159|consen 486 FKVEFLHEE--PVEYVYRFILVPNRPLRFKFRPRN 518 (519)
T ss_pred cceeecCCC--CccceeEEEEcCCCCcceeeeeCC
Confidence 999998754 344556778889999999999985
No 26
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.96 E-value=1.2e-28 Score=181.68 Aligned_cols=107 Identities=19% Similarity=0.345 Sum_probs=91.0
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHHh
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
|.||||+.|.++.+++||||++|+||++|+||||++.. ..+..++|||.|+|.|+|++||.+|++++++.|+++
T Consensus 383 ~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~------~~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~ 456 (490)
T PLN02302 383 YTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT------PKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLG 456 (490)
T ss_pred EEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCC------CCCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999643 145689999999999999999999999999999999
Q ss_pred ceeeCCCCCCCCCccccceeeccCCCeEEEEEeCCC
Q 044618 81 FDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPRLS 116 (121)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 116 (121)
|++++.++. .... ......|..++.+++++|.+
T Consensus 457 f~~~~~~~~-~~~~--~~~~~~p~~~~~~~~~~~~~ 489 (490)
T PLN02302 457 YRLERLNPG-CKVM--YLPHPRPKDNCLARITKVAS 489 (490)
T ss_pred CeeEEcCCC-Ccce--eCCCCCCCCCceEEEEeccC
Confidence 999987642 1222 22235677899999998864
No 27
>PLN02774 brassinosteroid-6-oxidase
Probab=99.96 E-value=1.3e-28 Score=180.99 Aligned_cols=104 Identities=24% Similarity=0.538 Sum_probs=86.1
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHHh
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
|.||||+.|+++.+.+|+||++|+||++|+||||++++.. ....++|||+|+|.|+|+++|.+|++++++.|+++
T Consensus 359 ~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~-----~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~ 433 (463)
T PLN02774 359 YVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLE-----SHNYFFLFGGGTRLCPGKELGIVEISTFLHYFVTR 433 (463)
T ss_pred EEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcC-----CCccccCcCCCCCcCCcHHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999999999999999999975411 12359999999999999999999999999999999
Q ss_pred ceeeCCCCCCCCCccccceeeccCCCeEEEEEe
Q 044618 81 FDFTTPSDEPVDMGEAMGLAIAKATPLEVILSP 113 (121)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (121)
|++++.++.... . .. .+.|..++.+++++
T Consensus 434 f~~~~~~~~~~~--~-~~-~~~p~~g~~~~~~~ 462 (463)
T PLN02774 434 YRWEEVGGDKLM--K-FP-RVEAPNGLHIRVSP 462 (463)
T ss_pred ceEEECCCCccc--c-CC-CCCCCCCceEEeee
Confidence 999997654321 1 11 23366788888873
No 28
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.96 E-value=9.8e-29 Score=181.65 Aligned_cols=104 Identities=20% Similarity=0.442 Sum_probs=88.7
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHHh
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
|.|||||.|.++.+++|+||++|+||++|+||||++.. .+..++|||.|+|.|+|+++|++|++++++.|+++
T Consensus 359 ~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~-------~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~ll~~ 431 (463)
T PLN02196 359 YLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP-------KPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTK 431 (463)
T ss_pred EEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC-------CCCcccCcCCCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999632 35689999999999999999999999999999999
Q ss_pred ceeeCCCCCCCCCccccceeeccCCCeEEEEEeC
Q 044618 81 FDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPR 114 (121)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 114 (121)
|++++.+++. +. ....+..|+.++.|+++.+
T Consensus 432 f~~~~~~~~~-~~--~~~~~~~p~~~~~~~~~~~ 462 (463)
T PLN02196 432 YRWSIVGTSN-GI--QYGPFALPQNGLPIALSRK 462 (463)
T ss_pred cEEEEcCCCC-ce--EEcccccCCCCceEEEecC
Confidence 9999876432 22 2233445788888888754
No 29
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.95 E-value=2.6e-28 Score=179.93 Aligned_cols=110 Identities=20% Similarity=0.374 Sum_probs=93.1
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHHh
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
|.||||+.|.++.+.+|+||++|+||++|+||||+++... ......++|||.|+|.|+|++||.+|++++++.|+++
T Consensus 362 ~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~---~~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~ 438 (472)
T PLN02987 362 YTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGT---TVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTR 438 (472)
T ss_pred EEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCC---CCCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999975321 1134679999999999999999999999999999999
Q ss_pred ceeeCCCCCCCCCccccceeeccCCCeEEEEEeCCCC
Q 044618 81 FDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPRLSA 117 (121)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~ 117 (121)
|++++.++..+.. ..++.|..++.+++++|..+
T Consensus 439 f~~~~~~~~~~~~----~~~~~p~~~~~~~~~~r~~~ 471 (472)
T PLN02987 439 FSWVPAEQDKLVF----FPTTRTQKRYPINVKRRDVA 471 (472)
T ss_pred eEEEECCCCceee----cccccCCCCceEEEEecccC
Confidence 9999876543211 33667878899999999654
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=1.3e-27 Score=171.27 Aligned_cols=114 Identities=22% Similarity=0.513 Sum_probs=95.8
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccC--CccceeeccCCCCCCCchHHHHHHHHHHHHHHH
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRG--QNFELIPFGSGRRMCPAVSLGLQVVQLTLASLV 78 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~--~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll 78 (121)
|.||+|..|.+++..+|+||++|+||+.|+|+||++++++....+ -.+.++|||+|.+.|||+.||.+|++.++..+|
T Consensus 370 Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L 449 (486)
T KOG0684|consen 370 YVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLL 449 (486)
T ss_pred eecCCCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCCCchHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999998775442222 344569999999999999999999999999999
Q ss_pred HhceeeCCCCCCCCCccccceeeccCCCeEEEEEeCC
Q 044618 79 HAFDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPRL 115 (121)
Q Consensus 79 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 115 (121)
+.||+++.+++-...+ ...+++.|..+++++.+.|.
T Consensus 450 ~~fdleLid~~~P~~d-~s~~v~~P~g~v~irYK~R~ 485 (486)
T KOG0684|consen 450 RHFDLELIDGPFPEVD-YSRMVMQPEGDVRIRYKRRP 485 (486)
T ss_pred HHcceeecCCCCCCCC-HHHhhcCCCCCceEEEeecC
Confidence 9999999986322222 23446778889999998885
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=2.9e-24 Score=156.20 Aligned_cols=99 Identities=27% Similarity=0.502 Sum_probs=82.1
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchHHHHHHHHHHHHHHHHh
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
|.||||+.|.+++++.||||+.|++|++|+|+||. ..++|||+|+|.|+|..||++|++++++.|+++
T Consensus 312 ~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~------------~~~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r 379 (411)
T COG2124 312 YRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN------------NAHLPFGGGPHRCLGAALARLELKVALAELLRR 379 (411)
T ss_pred EEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC------------CCCcCCCCCCccccCHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999987 468999999999999999999999999999999
Q ss_pred ceeeCCCCCCCCCccccceeeccCCCeEEEEEeC
Q 044618 81 FDFTTPSDEPVDMGEAMGLAIAKATPLEVILSPR 114 (121)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 114 (121)
|++....+ . . ......+..+..+..+.++.+
T Consensus 380 ~~~~~~~~-~-~-~~~~~~~~~~~g~~~l~v~~~ 410 (411)
T COG2124 380 FPLLLLAE-P-P-PLVRRPTLVPRGGERLPVRRR 410 (411)
T ss_pred CchhhcCC-C-C-CccccccccCCCcceeeeecC
Confidence 99888765 2 1 122233344555666666544
No 32
>PLN02648 allene oxide synthase
Probab=99.89 E-value=3e-23 Score=153.32 Aligned_cols=83 Identities=25% Similarity=0.495 Sum_probs=70.9
Q ss_pred CccCCCCEEeechhhhccCCCCCCCCCCCCCCCcCCCCCCccccCCccceee---------ccCCCCCCCchHHHHHHHH
Q 044618 1 YHVPAGTQLFVNAWKIQRDPSVWEEPCQFQPERFLTRYKDIDVRGQNFELIP---------FGSGRRMCPAVSLGLQVVQ 71 (121)
Q Consensus 1 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~~~---------Fg~G~r~C~G~~~A~~~~~ 71 (121)
|.||||+.|+++.+.+|+||++|+||++|+|+||++++.+ ....+++ ||+|+|.|+|++||++|++
T Consensus 370 ~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~-----~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~ 444 (480)
T PLN02648 370 FEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGE-----KLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVAR 444 (480)
T ss_pred EEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCcc-----ccccccccCCCcccCCCCCCCccCccHHHHHHHHH
Confidence 5799999999999999999999999999999999875321 1123333 3677899999999999999
Q ss_pred HHHHHHHHhce-eeCCCC
Q 044618 72 LTLASLVHAFD-FTTPSD 88 (121)
Q Consensus 72 ~~la~ll~~f~-~~~~~~ 88 (121)
++++.|+++|+ +++.++
T Consensus 445 ~~la~Ll~~f~~~~l~~~ 462 (480)
T PLN02648 445 LFVAELFLRYDSFEIEVD 462 (480)
T ss_pred HHHHHHHHHhCEEeecCC
Confidence 99999999998 998765
No 33
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=82.45 E-value=1.1 Score=24.01 Aligned_cols=10 Identities=40% Similarity=0.720 Sum_probs=7.5
Q ss_pred CCCCCcCCCC
Q 044618 29 FQPERFLTRY 38 (121)
Q Consensus 29 f~P~R~l~~~ 38 (121)
-||||||...
T Consensus 43 PDPERWLP~~ 52 (59)
T PF08492_consen 43 PDPERWLPKR 52 (59)
T ss_pred CCccccCchh
Confidence 3799999754
No 34
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=74.72 E-value=3.5 Score=26.04 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=16.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHh
Q 044618 58 RMCPAVSLGLQVVQLTLASLVHA 80 (121)
Q Consensus 58 r~C~G~~~A~~~~~~~la~ll~~ 80 (121)
-.|.|++||...+-.++..|+..
T Consensus 18 yN~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 18 YNCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp EETTS----HHHHHHHHHHHHHS
T ss_pred ecccchHHHHHHHHHHHHHHhcC
Confidence 36999999999999999999874
No 35
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=57.36 E-value=7.1 Score=22.49 Aligned_cols=19 Identities=11% Similarity=0.391 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhceeeCCC
Q 044618 69 VVQLTLASLVHAFDFTTPS 87 (121)
Q Consensus 69 ~~~~~la~ll~~f~~~~~~ 87 (121)
-|+-++.++|+-|||.|++
T Consensus 61 ~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 61 CIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred HHHHHHHHHhccCCceeee
Confidence 4788899999999999976
No 36
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=51.94 E-value=6.2 Score=17.92 Aligned_cols=6 Identities=67% Similarity=1.464 Sum_probs=3.8
Q ss_pred CCCCCc
Q 044618 29 FQPERF 34 (121)
Q Consensus 29 f~P~R~ 34 (121)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 457776
No 37
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=51.36 E-value=6.4 Score=17.24 Aligned_cols=6 Identities=67% Similarity=1.464 Sum_probs=3.5
Q ss_pred CCCCCc
Q 044618 29 FQPERF 34 (121)
Q Consensus 29 f~P~R~ 34 (121)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 356665
No 38
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=48.88 E-value=7.6 Score=20.41 Aligned_cols=10 Identities=50% Similarity=1.115 Sum_probs=8.7
Q ss_pred eccCCCCCCC
Q 044618 52 PFGSGRRMCP 61 (121)
Q Consensus 52 ~Fg~G~r~C~ 61 (121)
+||-|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6999999885
No 39
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.50 E-value=12 Score=29.42 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=11.9
Q ss_pred cCCCCCCCCCCCCCCCcCCCC
Q 044618 18 RDPSVWEEPCQFQPERFLTRY 38 (121)
Q Consensus 18 ~d~~~~~~p~~f~P~R~l~~~ 38 (121)
.+|..|...-.=||||||+..
T Consensus 570 k~pknyn~~~tPDPERWLP~r 590 (652)
T KOG2376|consen 570 KLPKNYNPKVTPDPERWLPRR 590 (652)
T ss_pred CCcccCCCCCCCChhhcccch
Confidence 355555332333588888765
No 40
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=43.82 E-value=18 Score=23.79 Aligned_cols=57 Identities=19% Similarity=0.419 Sum_probs=33.1
Q ss_pred CCCCCCCcCCCCCCccccCCccceeeccCCCCCCCc-hHHHHHH-HHHHHHHHHHhceeeC
Q 044618 27 CQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPA-VSLGLQV-VQLTLASLVHAFDFTT 85 (121)
Q Consensus 27 ~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G-~~~A~~~-~~~~la~ll~~f~~~~ 85 (121)
.+|+||+|=.-- .....+....+-|..|+=.|-| +...... ..--++.+|+++.+..
T Consensus 29 ~eYePe~fpgli--~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~i~~~L~~~g~~~ 87 (174)
T cd04516 29 AEYNPKRFAAVI--MRIREPKTTALIFSSGKMVCTGAKSEDDSKLAARKYARIIQKLGFPA 87 (174)
T ss_pred CEECCccCcEEE--EEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 578999874211 0111245678999999999998 3332221 2233456677665543
No 41
>PHA03162 hypothetical protein; Provisional
Probab=39.98 E-value=21 Score=22.35 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=18.0
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHH
Q 044618 54 GSGRRMCPAVSLGLQVVQLTLASL 77 (121)
Q Consensus 54 g~G~r~C~G~~~A~~~~~~~la~l 77 (121)
++|.+.||++...+-++..=|+.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 468999999888777766656554
No 42
>PLN00062 TATA-box-binding protein; Provisional
Probab=39.11 E-value=31 Score=22.75 Aligned_cols=55 Identities=20% Similarity=0.432 Sum_probs=32.9
Q ss_pred CCCCCCCcCCCCCCccccCCccceeeccCCCCCCCch-HHHHHH-HHHHHHHHHHhcee
Q 044618 27 CQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAV-SLGLQV-VQLTLASLVHAFDF 83 (121)
Q Consensus 27 ~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~-~~A~~~-~~~~la~ll~~f~~ 83 (121)
.+|+||+|=.-- .....+....+-|+.|+=.|-|- ...... ..--++.+|++..+
T Consensus 29 ~eYePe~fpgli--~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~~~~~L~~lg~ 85 (179)
T PLN00062 29 AEYNPKRFAAVI--MRIREPKTTALIFASGKMVCTGAKSEHDSKLAARKYARIIQKLGF 85 (179)
T ss_pred CEECCccCcEEE--EEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCC
Confidence 579999874211 01112456789999999999984 333222 22334566766655
No 43
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=39.07 E-value=27 Score=21.50 Aligned_cols=23 Identities=26% Similarity=0.631 Sum_probs=16.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHH
Q 044618 57 RRMCPAVSLGLQVVQLTLASLVH 79 (121)
Q Consensus 57 ~r~C~G~~~A~~~~~~~la~ll~ 79 (121)
.|.|||.-++....+.++..|-.
T Consensus 4 GH~Cpgl~~G~r~~~~a~~~l~~ 26 (131)
T PF02663_consen 4 GHLCPGLALGYRMAKYALEELGI 26 (131)
T ss_dssp SS--HHHHHHHHHHHHHHHHHTS
T ss_pred CCcCccHHHHHHHHHHHHHHcCC
Confidence 48899999999988888777643
No 44
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=38.06 E-value=9.1 Score=16.92 Aligned_cols=7 Identities=57% Similarity=1.236 Sum_probs=4.3
Q ss_pred CCCCCcC
Q 044618 29 FQPERFL 35 (121)
Q Consensus 29 f~P~R~l 35 (121)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 4577764
No 45
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=37.96 E-value=13 Score=24.54 Aligned_cols=36 Identities=19% Similarity=0.447 Sum_probs=24.8
Q ss_pred CCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchH
Q 044618 27 CQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVS 64 (121)
Q Consensus 27 ~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~ 64 (121)
.+|+|++|=.-- -....+....+-|..|+-.|-|-+
T Consensus 35 aeYnP~qFpGlv--~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLV--YRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeE--EEecCCcceEEEEecCcEEEeccC
Confidence 468999884211 011225678899999999999865
No 46
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=35.78 E-value=37 Score=15.61 Aligned_cols=16 Identities=25% Similarity=0.663 Sum_probs=12.6
Q ss_pred CccceeeccCCCCCCC
Q 044618 46 QNFELIPFGSGRRMCP 61 (121)
Q Consensus 46 ~~~~~~~Fg~G~r~C~ 61 (121)
....++++.+..|.|.
T Consensus 16 ~~~Ty~~~~G~r~~C~ 31 (31)
T PF07886_consen 16 RDNTYQPYDGPRRFCR 31 (31)
T ss_pred CCCcEeCCCCccccCc
Confidence 4568999998888884
No 47
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=35.52 E-value=16 Score=24.51 Aligned_cols=35 Identities=23% Similarity=0.598 Sum_probs=22.8
Q ss_pred CCCCCCCcCCCCCCccccCCccceeeccCCCCCCCch
Q 044618 27 CQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAV 63 (121)
Q Consensus 27 ~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 63 (121)
.+|+|.||-.-- .....+...-.-|.+|+-.|-|-
T Consensus 50 ~ey~Pk~~~aVi--mrir~P~~ta~I~ssGKi~ctgA 84 (200)
T KOG3302|consen 50 AEYNPKRFAAVI--MRIRSPRTTALIFSSGKIVCTGA 84 (200)
T ss_pred cccCcccccEEE--EEEcCCceEEEEecCCcEEEecc
Confidence 568999985311 01112455677899999999973
No 48
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=34.97 E-value=38 Score=22.15 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=33.0
Q ss_pred CCCCCCCcCCCCCCccccCCccceeeccCCCCCCCc-hHHH--HHHHHHHHHHHHHhceeeC
Q 044618 27 CQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPA-VSLG--LQVVQLTLASLVHAFDFTT 85 (121)
Q Consensus 27 ~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G-~~~A--~~~~~~~la~ll~~f~~~~ 85 (121)
.+|+||||-.-- .....+.-..+-|+.|+=.|-| +... ...+ --++.+|+++.+..
T Consensus 29 ~~YePe~fpgli--~R~~~P~~t~lIf~sGKivitGaks~~~~~~a~-~~~~~~L~~~g~~~ 87 (174)
T cd00652 29 AEYNPKRFPGVI--MRLREPKTTALIFSSGKMVITGAKSEEDAKLAA-RKYARILQKLGFPV 87 (174)
T ss_pred cEECCCccceEE--EEcCCCcEEEEEECCCEEEEEecCCHHHHHHHH-HHHHHHHHHcCCCc
Confidence 478898874311 0111246678999999999998 3333 2223 23445566665544
No 49
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=32.86 E-value=14 Score=24.32 Aligned_cols=56 Identities=13% Similarity=0.370 Sum_probs=32.1
Q ss_pred CCCCCCCcCCCCCCccccCCccceeeccCCCCCCCchH-H--HHHHHHHHHHHHHHhceeeC
Q 044618 27 CQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAVS-L--GLQVVQLTLASLVHAFDFTT 85 (121)
Q Consensus 27 ~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~-~--A~~~~~~~la~ll~~f~~~~ 85 (121)
.+|+|+||-.-- .....+....+-|..|+=.|.|-+ . |...++ -++.+|++..+..
T Consensus 29 ~eY~P~~fpgli--~Rl~~Pk~t~lIF~SGKiv~tGaks~~~a~~a~~-~~~~~L~~~g~~~ 87 (174)
T cd04518 29 AEYNPDQFPGLV--YRLEDPKIAALIFRSGKMVCTGAKSVEDLHRAVK-EIIKKLKDYGIKV 87 (174)
T ss_pred cEECCCcCcEEE--EEccCCcEEEEEECCCeEEEEccCCHHHHHHHHH-HHHHHHHhcCCCc
Confidence 478999874311 011124667899999999999752 2 222222 2344556555443
No 50
>PRK00394 transcription factor; Reviewed
Probab=29.68 E-value=61 Score=21.35 Aligned_cols=34 Identities=21% Similarity=0.512 Sum_probs=23.5
Q ss_pred CCCCCCCcCCCCCCccccCCccceeeccCCCCCCCc
Q 044618 27 CQFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPA 62 (121)
Q Consensus 27 ~~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G 62 (121)
.+|+|+||-.-- .....+....+-|..|+=.|.|
T Consensus 28 ~eYePe~fpgli--~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLV--YRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEE--EEecCCceEEEEEcCCcEEEEc
Confidence 478999874321 0112246678999999999998
No 51
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=25.95 E-value=26 Score=23.40 Aligned_cols=20 Identities=25% Similarity=0.595 Sum_probs=16.1
Q ss_pred CCCCCCCCCCCCC-CCcCCCC
Q 044618 19 DPSVWEEPCQFQP-ERFLTRY 38 (121)
Q Consensus 19 d~~~~~~p~~f~P-~R~l~~~ 38 (121)
..++|-+|+++.| +|||...
T Consensus 122 g~k~fi~p~KllPl~RFLP~p 142 (215)
T KOG3262|consen 122 GDKLFIDPDKLLPLDRFLPQP 142 (215)
T ss_pred CCeEEecccccCcHhhcCCCC
Confidence 3567789999999 7999765
No 52
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=25.40 E-value=30 Score=18.17 Aligned_cols=13 Identities=31% Similarity=0.802 Sum_probs=10.1
Q ss_pred eccCCCCCCC--chH
Q 044618 52 PFGSGRRMCP--AVS 64 (121)
Q Consensus 52 ~Fg~G~r~C~--G~~ 64 (121)
-||-|.|.|. |+.
T Consensus 11 ~yGkGsr~C~vCg~~ 25 (54)
T PTZ00218 11 TYGKGSRQCRVCSNR 25 (54)
T ss_pred cCCCCCCeeecCCCc
Confidence 5899999997 553
No 53
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=23.75 E-value=52 Score=18.62 Aligned_cols=34 Identities=24% Similarity=0.480 Sum_probs=22.2
Q ss_pred CCCCCCcCCCCCCccccCCccceeeccCCCCCCCch
Q 044618 28 QFQPERFLTRYKDIDVRGQNFELIPFGSGRRMCPAV 63 (121)
Q Consensus 28 ~f~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 63 (121)
+|+||+|-.-- ..........+-|..|+=.|.|-
T Consensus 32 ~YePe~fpgl~--~r~~~p~~t~~IF~sGki~itGa 65 (86)
T PF00352_consen 32 EYEPERFPGLI--YRLRNPKATVLIFSSGKIVITGA 65 (86)
T ss_dssp EEETTTESSEE--EEETTTTEEEEEETTSEEEEEEE
T ss_pred EEeeccCCeEE--EeecCCcEEEEEEcCCEEEEEec
Confidence 67888763210 01112466788999999999985
No 54
>PF14510 ABC_trans_N: ABC-transporter extracellular N-terminal
Probab=23.06 E-value=25 Score=19.89 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=15.0
Q ss_pred cCCCCCCCCCCCCCCCcCC
Q 044618 18 RDPSVWEEPCQFQPERFLT 36 (121)
Q Consensus 18 ~d~~~~~~p~~f~P~R~l~ 36 (121)
.|+..-|+.++|+.++|+.
T Consensus 23 ~d~~ldp~s~~Fdl~~~lr 41 (85)
T PF14510_consen 23 SDSSLDPDSDDFDLRRWLR 41 (85)
T ss_pred CCCCCCCCCccccHHHHHH
Confidence 4566667778899999996
Done!