Query 044619
Match_columns 281
No_of_seqs 292 out of 1841
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:04:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 2.5E-18 5.4E-23 160.0 9.0 78 122-200 205-283 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 4.3E-15 9.4E-20 99.1 1.8 44 147-191 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.3 1.1E-12 2.5E-17 117.2 4.7 77 121-197 147-229 (238)
4 PF12678 zf-rbx1: RING-H2 zinc 99.3 2.1E-12 4.5E-17 95.6 3.1 46 146-191 19-73 (73)
5 COG5243 HRD1 HRD ubiquitin lig 99.2 1.6E-11 3.4E-16 114.1 4.9 53 145-198 286-348 (491)
6 COG5540 RING-finger-containing 99.2 9.9E-12 2.1E-16 112.7 3.2 50 145-195 322-372 (374)
7 PF12861 zf-Apc11: Anaphase-pr 99.0 2.8E-10 6.1E-15 85.8 3.7 52 145-196 20-83 (85)
8 cd00162 RING RING-finger (Real 98.9 7.6E-10 1.6E-14 72.3 3.5 44 148-194 1-45 (45)
9 PF13920 zf-C3HC4_3: Zinc fing 98.9 6.5E-10 1.4E-14 76.0 2.5 47 146-196 2-49 (50)
10 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.2E-09 2.6E-14 70.9 2.4 39 149-190 1-39 (39)
11 COG5194 APC11 Component of SCF 98.8 1.5E-09 3.3E-14 80.1 2.3 51 146-196 20-82 (88)
12 PHA02926 zinc finger-like prot 98.8 1.6E-09 3.5E-14 94.9 2.5 55 145-199 169-234 (242)
13 KOG0317 Predicted E3 ubiquitin 98.8 2.9E-09 6.3E-14 96.4 3.9 47 146-196 239-285 (293)
14 KOG0802 E3 ubiquitin ligase [P 98.8 1.3E-09 2.9E-14 108.8 1.8 51 145-196 290-342 (543)
15 PLN03208 E3 ubiquitin-protein 98.8 3.5E-09 7.6E-14 91.5 4.0 48 145-196 17-80 (193)
16 KOG0320 Predicted E3 ubiquitin 98.7 5.2E-09 1.1E-13 88.7 2.4 50 146-197 131-180 (187)
17 KOG0823 Predicted E3 ubiquitin 98.7 1.1E-08 2.3E-13 90.2 3.4 51 145-199 46-99 (230)
18 PF14634 zf-RING_5: zinc-RING 98.6 1.9E-08 4.1E-13 67.0 2.9 44 148-192 1-44 (44)
19 PF00097 zf-C3HC4: Zinc finger 98.6 1.5E-08 3.2E-13 66.1 2.0 39 149-190 1-41 (41)
20 smart00184 RING Ring finger. E 98.6 2.8E-08 6.1E-13 62.5 3.1 38 149-190 1-39 (39)
21 PF15227 zf-C3HC4_4: zinc fing 98.6 2.2E-08 4.8E-13 66.1 1.9 38 149-190 1-42 (42)
22 KOG1493 Anaphase-promoting com 98.6 1E-08 2.3E-13 75.1 0.2 51 146-196 20-82 (84)
23 smart00504 Ubox Modified RING 98.5 9.8E-08 2.1E-12 67.7 4.1 45 147-195 2-46 (63)
24 KOG2930 SCF ubiquitin ligase, 98.5 3.2E-08 6.9E-13 76.6 0.9 52 144-195 44-108 (114)
25 TIGR00599 rad18 DNA repair pro 98.4 1.5E-07 3.2E-12 90.2 3.5 50 143-196 23-72 (397)
26 KOG0828 Predicted E3 ubiquitin 98.4 5.1E-07 1.1E-11 87.0 6.2 50 145-195 570-634 (636)
27 COG5219 Uncharacterized conser 98.3 8.7E-08 1.9E-12 97.9 -0.3 68 129-196 1452-1524(1525)
28 smart00744 RINGv The RING-vari 98.2 9.6E-07 2.1E-11 60.3 3.1 42 148-191 1-49 (49)
29 KOG1734 Predicted RING-contain 98.1 5.8E-07 1.3E-11 80.8 0.9 51 144-195 222-281 (328)
30 KOG0287 Postreplication repair 98.1 6.5E-07 1.4E-11 82.8 0.3 48 145-196 22-69 (442)
31 KOG0804 Cytoplasmic Zn-finger 98.1 1.2E-06 2.7E-11 83.6 2.1 52 142-195 171-222 (493)
32 COG5574 PEX10 RING-finger-cont 98.1 1.8E-06 3.9E-11 77.6 2.8 48 146-197 215-264 (271)
33 PF11793 FANCL_C: FANCL C-term 98.1 7.2E-07 1.6E-11 65.4 -0.2 51 146-196 2-67 (70)
34 PF13445 zf-RING_UBOX: RING-ty 98.0 4.9E-06 1.1E-10 55.2 2.4 34 149-184 1-35 (43)
35 COG5432 RAD18 RING-finger-cont 97.9 3.9E-06 8.5E-11 76.3 1.6 47 145-195 24-70 (391)
36 TIGR00570 cdk7 CDK-activating 97.9 9.1E-06 2E-10 75.3 3.4 52 146-198 3-57 (309)
37 PF04564 U-box: U-box domain; 97.8 8.4E-06 1.8E-10 60.1 1.9 47 146-196 4-51 (73)
38 KOG2164 Predicted E3 ubiquitin 97.8 8.4E-06 1.8E-10 79.3 2.4 47 146-196 186-237 (513)
39 KOG2177 Predicted E3 ubiquitin 97.8 9.4E-06 2E-10 72.5 1.5 44 144-191 11-54 (386)
40 KOG1039 Predicted E3 ubiquitin 97.7 2.8E-05 6.1E-10 73.3 3.9 56 146-201 161-227 (344)
41 KOG0827 Predicted E3 ubiquitin 97.6 3.3E-05 7.2E-10 72.8 2.4 45 147-191 5-52 (465)
42 PF14835 zf-RING_6: zf-RING of 97.6 1.2E-05 2.7E-10 57.4 -0.6 46 145-195 6-51 (65)
43 KOG4445 Uncharacterized conser 97.5 6.8E-05 1.5E-09 68.6 3.2 56 145-201 114-192 (368)
44 KOG0311 Predicted E3 ubiquitin 97.5 1.1E-05 2.4E-10 75.2 -2.6 59 145-206 42-101 (381)
45 KOG0825 PHD Zn-finger protein 97.4 3.7E-05 8E-10 77.9 0.3 55 147-202 124-178 (1134)
46 KOG4265 Predicted E3 ubiquitin 97.4 0.00011 2.4E-09 68.8 3.4 48 145-196 289-337 (349)
47 KOG1645 RING-finger-containing 97.3 0.00018 4E-09 68.3 2.9 50 146-195 4-56 (463)
48 KOG4172 Predicted E3 ubiquitin 97.2 0.00013 2.7E-09 50.5 0.7 47 146-196 7-55 (62)
49 KOG0978 E3 ubiquitin ligase in 97.1 0.00019 4.2E-09 72.9 1.5 49 145-197 642-691 (698)
50 KOG1941 Acetylcholine receptor 97.0 0.00054 1.2E-08 64.9 3.3 49 146-195 365-416 (518)
51 KOG0824 Predicted E3 ubiquitin 97.0 0.00044 9.6E-09 63.5 2.3 48 146-197 7-55 (324)
52 KOG1785 Tyrosine kinase negati 96.9 0.00031 6.6E-09 66.7 0.8 46 148-197 371-418 (563)
53 KOG4159 Predicted E3 ubiquitin 96.8 0.00067 1.4E-08 65.3 2.5 50 143-196 81-130 (398)
54 KOG0297 TNF receptor-associate 96.5 0.0016 3.4E-08 62.9 2.4 54 144-200 19-72 (391)
55 PF05883 Baculo_RING: Baculovi 96.5 0.001 2.2E-08 54.6 0.8 38 146-184 26-69 (134)
56 KOG0801 Predicted E3 ubiquitin 96.3 0.0016 3.4E-08 54.9 1.0 29 145-174 176-204 (205)
57 PF11789 zf-Nse: Zinc-finger o 96.2 0.0015 3.3E-08 45.9 0.6 41 146-189 11-53 (57)
58 KOG2660 Locus-specific chromos 96.1 0.0014 3.1E-08 60.9 0.1 49 144-195 13-61 (331)
59 KOG3970 Predicted E3 ubiquitin 96.1 0.0052 1.1E-07 54.4 3.5 51 145-197 49-107 (299)
60 KOG1428 Inhibitor of type V ad 96.1 0.0042 9.2E-08 67.0 3.3 65 132-197 3471-3546(3738)
61 KOG1814 Predicted E3 ubiquitin 95.7 0.0067 1.4E-07 58.0 2.4 47 145-192 183-237 (445)
62 KOG1952 Transcription factor N 95.6 0.008 1.7E-07 62.0 3.0 51 145-195 190-247 (950)
63 PF12906 RINGv: RING-variant d 95.6 0.006 1.3E-07 41.1 1.4 40 149-190 1-47 (47)
64 PHA03096 p28-like protein; Pro 95.3 0.0086 1.9E-07 55.4 1.8 48 147-194 179-236 (284)
65 COG5152 Uncharacterized conser 95.3 0.009 2E-07 52.0 1.7 45 146-194 196-240 (259)
66 PF10367 Vps39_2: Vacuolar sor 95.3 0.007 1.5E-07 46.9 0.9 32 145-178 77-108 (109)
67 KOG0826 Predicted E3 ubiquitin 95.1 0.035 7.6E-07 51.8 4.9 47 145-194 299-345 (357)
68 COG5222 Uncharacterized conser 94.8 0.034 7.4E-07 51.3 4.1 46 147-195 275-322 (427)
69 KOG3039 Uncharacterized conser 94.7 0.026 5.7E-07 50.7 3.0 54 147-200 222-275 (303)
70 PHA02862 5L protein; Provision 94.7 0.03 6.5E-07 46.5 3.0 47 146-197 2-55 (156)
71 KOG4739 Uncharacterized protei 94.5 0.018 4E-07 51.5 1.5 50 148-201 5-54 (233)
72 KOG2879 Predicted E3 ubiquitin 94.5 0.037 8E-07 50.5 3.5 48 145-195 238-287 (298)
73 PHA02825 LAP/PHD finger-like p 94.2 0.055 1.2E-06 45.7 3.7 51 144-198 6-62 (162)
74 KOG0827 Predicted E3 ubiquitin 94.0 0.0045 9.8E-08 58.7 -3.4 50 146-196 196-246 (465)
75 KOG4692 Predicted E3 ubiquitin 93.9 0.067 1.4E-06 50.5 4.0 49 144-196 420-468 (489)
76 KOG1571 Predicted E3 ubiquitin 93.9 0.045 9.8E-07 51.7 2.8 45 145-196 304-348 (355)
77 KOG3268 Predicted E3 ubiquitin 93.8 0.049 1.1E-06 46.8 2.7 32 167-198 189-231 (234)
78 KOG1002 Nucleotide excision re 93.8 0.031 6.6E-07 55.2 1.6 50 144-197 534-588 (791)
79 KOG2114 Vacuolar assembly/sort 93.7 0.03 6.5E-07 58.0 1.4 44 144-193 838-881 (933)
80 PF14570 zf-RING_4: RING/Ubox 93.6 0.041 8.9E-07 37.3 1.6 45 149-194 1-47 (48)
81 KOG1813 Predicted E3 ubiquitin 93.4 0.031 6.6E-07 51.5 0.9 45 147-195 242-286 (313)
82 PF08746 zf-RING-like: RING-li 93.2 0.038 8.1E-07 36.5 0.9 41 149-190 1-43 (43)
83 PF10272 Tmpp129: Putative tra 92.7 0.089 1.9E-06 50.2 2.9 52 143-195 268-351 (358)
84 PF14447 Prok-RING_4: Prokaryo 92.7 0.068 1.5E-06 37.1 1.6 43 148-196 9-51 (55)
85 KOG4185 Predicted E3 ubiquitin 92.3 0.1 2.2E-06 48.2 2.6 48 146-194 3-54 (296)
86 PF04641 Rtf2: Rtf2 RING-finge 92.1 0.15 3.2E-06 46.5 3.6 54 145-199 112-165 (260)
87 PF14446 Prok-RING_1: Prokaryo 91.9 0.18 3.9E-06 35.0 2.9 35 145-179 4-38 (54)
88 KOG4275 Predicted E3 ubiquitin 90.2 0.062 1.3E-06 49.5 -0.9 43 146-196 300-343 (350)
89 PF01708 Gemini_mov: Geminivir 90.0 0.35 7.6E-06 36.9 3.2 41 50-90 28-68 (91)
90 KOG0309 Conserved WD40 repeat- 89.4 0.23 5E-06 51.1 2.3 23 167-189 1047-1069(1081)
91 KOG1001 Helicase-like transcri 88.7 0.18 4E-06 52.0 1.1 48 147-199 455-504 (674)
92 KOG2034 Vacuolar sorting prote 88.6 0.19 4E-06 52.6 1.1 35 145-181 816-850 (911)
93 KOG0298 DEAD box-containing he 88.6 0.14 2.9E-06 55.5 0.1 52 146-200 1153-1204(1394)
94 COG5236 Uncharacterized conser 88.1 0.5 1.1E-05 44.7 3.4 52 142-197 57-110 (493)
95 KOG1940 Zn-finger protein [Gen 87.4 0.33 7.1E-06 44.7 1.7 45 147-192 159-204 (276)
96 KOG2932 E3 ubiquitin ligase in 87.3 0.24 5.1E-06 46.1 0.8 46 147-197 91-136 (389)
97 PF01102 Glycophorin_A: Glycop 87.1 1.1 2.3E-05 36.5 4.4 24 58-81 65-88 (122)
98 KOG3653 Transforming growth fa 84.9 2.1 4.5E-05 42.4 5.9 13 173-185 291-303 (534)
99 PF07800 DUF1644: Protein of u 84.5 1.3 2.9E-05 37.4 3.8 37 146-182 2-47 (162)
100 KOG3053 Uncharacterized conser 84.3 0.6 1.3E-05 42.4 1.8 53 145-198 19-85 (293)
101 PF03854 zf-P11: P-11 zinc fin 83.8 0.53 1.2E-05 31.7 1.0 30 167-196 17-47 (50)
102 PF15102 TMEM154: TMEM154 prot 83.6 0.47 1E-05 39.6 0.8 9 175-183 128-136 (146)
103 KOG3899 Uncharacterized conser 82.1 0.74 1.6E-05 42.6 1.5 29 168-196 325-366 (381)
104 COG5175 MOT2 Transcriptional r 81.6 1.2 2.6E-05 42.1 2.7 53 145-198 13-67 (480)
105 KOG2817 Predicted E3 ubiquitin 81.3 4.6 9.9E-05 38.9 6.6 45 145-190 333-380 (394)
106 KOG0802 E3 ubiquitin ligase [P 81.2 0.89 1.9E-05 45.8 1.9 45 145-197 478-522 (543)
107 KOG1812 Predicted E3 ubiquitin 80.2 0.77 1.7E-05 44.3 1.0 39 145-184 145-184 (384)
108 PF02439 Adeno_E3_CR2: Adenovi 80.1 4.4 9.4E-05 26.0 4.1 25 62-87 8-32 (38)
109 KOG1100 Predicted E3 ubiquitin 79.7 0.94 2E-05 40.0 1.4 40 149-196 161-201 (207)
110 KOG1609 Protein involved in mR 79.6 1.3 2.7E-05 40.8 2.2 51 146-197 78-136 (323)
111 KOG3002 Zn finger protein [Gen 78.4 1.5 3.3E-05 40.9 2.4 47 144-196 46-92 (299)
112 PF05290 Baculo_IE-1: Baculovi 77.1 2 4.4E-05 35.3 2.4 53 146-198 80-135 (140)
113 PF13908 Shisa: Wnt and FGF in 76.2 1.7 3.7E-05 37.2 1.9 6 16-21 17-22 (179)
114 PF02009 Rifin_STEVOR: Rifin/s 75.9 3.3 7.2E-05 38.7 3.8 27 58-85 257-283 (299)
115 KOG0269 WD40 repeat-containing 74.2 3 6.6E-05 43.2 3.4 41 147-189 780-820 (839)
116 PF15471 TMEM171: Transmembran 73.8 2.1 4.5E-05 39.3 1.9 13 32-44 214-226 (319)
117 PF10577 UPF0560: Uncharacteri 72.8 8.3 0.00018 40.4 6.1 31 62-92 274-305 (807)
118 PF07010 Endomucin: Endomucin; 72.2 5.2 0.00011 35.8 3.9 29 55-87 189-217 (259)
119 TIGR01477 RIFIN variant surfac 71.6 5.3 0.00011 38.1 4.1 29 57-86 310-338 (353)
120 PTZ00046 rifin; Provisional 70.0 6 0.00013 37.8 4.1 29 57-86 315-343 (358)
121 PF13901 DUF4206: Domain of un 69.0 3.5 7.7E-05 36.1 2.2 40 146-191 152-196 (202)
122 COG5183 SSM4 Protein involved 68.6 6 0.00013 41.6 4.0 60 145-206 11-77 (1175)
123 KOG1829 Uncharacterized conser 64.5 2.4 5.1E-05 43.0 0.2 41 146-190 511-556 (580)
124 KOG4367 Predicted Zn-finger pr 64.3 3.7 7.9E-05 40.1 1.5 32 145-180 3-34 (699)
125 KOG3161 Predicted E3 ubiquitin 63.6 2.5 5.4E-05 43.1 0.2 45 145-192 10-54 (861)
126 PLN02189 cellulose synthase 62.7 11 0.00023 40.9 4.7 54 145-198 33-90 (1040)
127 KOG0825 PHD Zn-finger protein 62.5 4.9 0.00011 42.0 2.1 55 146-200 96-159 (1134)
128 KOG4718 Non-SMC (structural ma 62.4 3.8 8.3E-05 36.3 1.1 45 146-193 181-225 (235)
129 KOG4362 Transcriptional regula 62.0 2.3 5E-05 43.8 -0.4 48 146-197 21-71 (684)
130 PF05568 ASFV_J13L: African sw 61.6 12 0.00026 31.3 3.9 9 36-44 18-26 (189)
131 PF15050 SCIMP: SCIMP protein 61.1 21 0.00045 28.9 5.0 9 55-63 7-15 (133)
132 PF14569 zf-UDP: Zinc-binding 60.3 9.3 0.0002 28.5 2.6 52 145-196 8-63 (80)
133 PF02439 Adeno_E3_CR2: Adenovi 59.8 22 0.00048 22.8 4.0 29 58-86 7-35 (38)
134 smart00249 PHD PHD zinc finger 59.4 6 0.00013 24.9 1.4 31 148-179 1-31 (47)
135 PF06305 DUF1049: Protein of u 59.1 5.1 0.00011 28.3 1.2 26 57-82 18-43 (68)
136 KOG2066 Vacuolar assembly/sort 59.0 3.4 7.4E-05 43.1 0.3 44 145-190 783-830 (846)
137 KOG3800 Predicted E3 ubiquitin 58.8 8.6 0.00019 35.6 2.8 52 148-200 2-56 (300)
138 COG5220 TFB3 Cdk activating ki 58.6 4.1 8.9E-05 36.8 0.7 50 145-194 9-63 (314)
139 PLN02436 cellulose synthase A 58.3 14 0.00031 40.1 4.7 53 146-198 36-92 (1094)
140 PF08114 PMP1_2: ATPase proteo 56.6 6.5 0.00014 25.7 1.2 8 79-86 29-36 (43)
141 PF06024 DUF912: Nucleopolyhed 55.4 7.7 0.00017 30.2 1.7 17 63-79 65-81 (101)
142 TIGR01478 STEVOR variant surfa 55.1 17 0.00036 33.8 4.0 27 55-81 257-283 (295)
143 PF10571 UPF0547: Uncharacteri 54.7 6.9 0.00015 22.9 1.0 23 148-172 2-24 (26)
144 PF07213 DAP10: DAP10 membrane 53.8 22 0.00047 26.6 3.7 27 63-89 36-62 (79)
145 PTZ00370 STEVOR; Provisional 53.7 16 0.00036 33.8 3.7 27 55-81 253-279 (296)
146 KOG1815 Predicted E3 ubiquitin 52.7 7.8 0.00017 38.1 1.6 36 145-183 69-104 (444)
147 KOG3005 GIY-YIG type nuclease 52.2 7.7 0.00017 35.6 1.3 48 147-194 183-242 (276)
148 PF06679 DUF1180: Protein of u 52.0 27 0.00058 29.8 4.5 18 63-80 97-114 (163)
149 PF00628 PHD: PHD-finger; Int 51.7 6.6 0.00014 26.0 0.7 43 148-191 1-49 (51)
150 PF01102 Glycophorin_A: Glycop 51.2 29 0.00063 28.1 4.4 30 52-81 62-91 (122)
151 PF07010 Endomucin: Endomucin; 51.1 25 0.00054 31.6 4.3 20 70-89 197-216 (259)
152 COG5109 Uncharacterized conser 51.0 39 0.00085 31.9 5.7 45 145-190 335-382 (396)
153 TIGR00622 ssl1 transcription f 51.0 19 0.00041 28.8 3.3 46 146-191 55-110 (112)
154 PF08374 Protocadherin: Protoc 50.0 17 0.00036 32.4 3.0 32 55-87 35-66 (221)
155 PTZ00087 thrombosponding-relat 49.9 22 0.00047 32.8 3.8 25 55-79 295-319 (340)
156 PLN02400 cellulose synthase 49.8 19 0.00041 39.2 4.0 53 145-197 35-91 (1085)
157 PF14654 Epiglycanin_C: Mucin, 49.3 35 0.00075 26.6 4.3 29 55-83 17-45 (106)
158 PHA02650 hypothetical protein; 49.2 29 0.00063 25.9 3.7 9 74-82 63-71 (81)
159 PF05283 MGC-24: Multi-glycosy 49.0 24 0.00053 30.7 3.9 6 80-85 180-185 (186)
160 PF06844 DUF1244: Protein of u 48.8 11 0.00023 27.3 1.4 11 172-182 12-22 (68)
161 PLN02638 cellulose synthase A 48.8 26 0.00057 38.2 4.8 53 145-197 16-72 (1079)
162 PF00558 Vpu: Vpu protein; In 48.8 24 0.00051 26.6 3.3 18 63-80 9-26 (81)
163 PF11980 DUF3481: Domain of un 48.2 21 0.00045 27.1 2.9 36 55-90 11-46 (87)
164 KOG1025 Epidermal growth facto 48.0 29 0.00063 37.2 4.9 10 25-34 596-605 (1177)
165 KOG3039 Uncharacterized conser 47.2 17 0.00036 33.1 2.7 39 143-185 40-78 (303)
166 KOG3457 Sec61 protein transloc 45.4 23 0.0005 26.9 2.7 37 47-85 49-85 (88)
167 PF15065 NCU-G1: Lysosomal tra 45.3 22 0.00049 34.0 3.4 27 55-81 314-340 (350)
168 PF14914 LRRC37AB_C: LRRC37A/B 45.0 38 0.00082 28.4 4.2 28 60-87 121-148 (154)
169 PF03229 Alpha_GJ: Alphavirus 44.4 28 0.00061 28.0 3.2 27 61-87 87-114 (126)
170 TIGR00917 2A060601 Niemann-Pic 44.2 33 0.00071 38.2 4.9 13 170-182 397-409 (1204)
171 PF05393 Hum_adeno_E3A: Human 44.2 25 0.00055 26.8 2.8 6 82-87 53-58 (94)
172 PF02891 zf-MIZ: MIZ/SP-RING z 44.2 27 0.00059 23.5 2.8 43 147-193 3-50 (50)
173 PF13719 zinc_ribbon_5: zinc-r 43.9 13 0.00029 23.4 1.1 26 148-173 4-36 (37)
174 TIGR03024 arch_pef_cterm PEF-C 43.9 31 0.00067 20.3 2.6 7 55-61 3-9 (26)
175 PF04639 Baculo_E56: Baculovir 43.8 15 0.00034 34.0 2.0 12 72-83 289-300 (305)
176 PHA02650 hypothetical protein; 43.4 58 0.0013 24.4 4.5 25 57-81 50-74 (81)
177 PRK14710 hypothetical protein; 42.8 19 0.0004 26.4 1.8 26 53-78 5-30 (86)
178 PF07975 C1_4: TFIIH C1-like d 42.7 13 0.00029 25.4 1.0 41 149-190 2-49 (51)
179 PF03911 Sec61_beta: Sec61beta 42.4 29 0.00062 22.6 2.6 27 47-73 9-35 (41)
180 PF13260 DUF4051: Protein of u 42.4 32 0.0007 23.2 2.8 20 70-89 12-31 (54)
181 PF06024 DUF912: Nucleopolyhed 42.1 7.9 0.00017 30.2 -0.1 26 55-80 60-85 (101)
182 PF05454 DAG1: Dystroglycan (D 42.0 8.5 0.00018 35.8 0.0 11 64-74 151-161 (290)
183 smart00132 LIM Zinc-binding do 41.9 23 0.00051 21.2 2.1 37 148-194 1-37 (39)
184 KOG3113 Uncharacterized conser 41.3 21 0.00046 32.6 2.4 49 147-197 112-160 (293)
185 KOG2807 RNA polymerase II tran 41.0 25 0.00054 33.3 2.9 67 125-192 307-375 (378)
186 KOG3579 Predicted E3 ubiquitin 40.5 13 0.00029 34.4 1.0 41 145-185 267-307 (352)
187 PF01363 FYVE: FYVE zinc finge 39.2 13 0.00027 26.3 0.6 36 145-180 8-43 (69)
188 PF04277 OAD_gamma: Oxaloaceta 39.2 53 0.0011 23.8 3.9 19 59-77 5-23 (79)
189 PF12606 RELT: Tumour necrosis 38.5 41 0.00088 23.0 2.9 8 73-80 17-24 (50)
190 PF13717 zinc_ribbon_4: zinc-r 37.9 21 0.00045 22.4 1.3 26 148-173 4-36 (36)
191 PF03954 Lectin_N: Hepatic lec 37.7 24 0.00051 29.2 1.9 20 60-79 34-53 (138)
192 KOG3637 Vitronectin receptor, 37.0 24 0.00052 38.5 2.5 29 55-83 974-1002(1030)
193 TIGR01478 STEVOR variant surfa 35.1 44 0.00095 31.1 3.4 24 64-87 263-286 (295)
194 PF15145 DUF4577: Domain of un 35.0 65 0.0014 25.8 3.9 24 57-80 61-84 (128)
195 KOG1812 Predicted E3 ubiquitin 34.7 20 0.00042 34.7 1.2 44 146-190 306-351 (384)
196 cd00065 FYVE FYVE domain; Zinc 34.5 32 0.00069 23.1 2.0 35 147-181 3-37 (57)
197 PF02038 ATP1G1_PLM_MAT8: ATP1 34.2 16 0.00034 25.0 0.4 20 67-86 21-40 (50)
198 PF01034 Syndecan: Syndecan do 34.1 14 0.0003 26.6 0.1 18 63-80 15-32 (64)
199 PF15018 InaF-motif: TRP-inter 34.0 52 0.0011 21.2 2.7 24 57-80 8-31 (38)
200 PHA03164 hypothetical protein; 33.8 37 0.0008 25.3 2.2 13 56-68 58-70 (88)
201 KOG0956 PHD finger protein AF1 33.5 15 0.00033 38.0 0.2 68 121-197 100-184 (900)
202 PHA02844 putative transmembran 33.2 1.1E+02 0.0023 22.7 4.6 17 61-77 53-69 (75)
203 PF10497 zf-4CXXC_R1: Zinc-fin 33.2 51 0.0011 25.9 3.1 24 169-192 37-69 (105)
204 KOG2052 Activin A type IB rece 33.2 73 0.0016 31.7 4.8 13 32-44 106-119 (513)
205 PHA03163 hypothetical protein; 32.9 85 0.0018 24.0 4.1 29 55-83 56-85 (92)
206 PLN02915 cellulose synthase A 32.4 66 0.0014 35.1 4.7 52 145-196 14-69 (1044)
207 KOG0824 Predicted E3 ubiquitin 32.3 17 0.00036 34.0 0.3 49 145-196 104-152 (324)
208 PF06667 PspB: Phage shock pro 32.3 88 0.0019 23.2 4.1 7 81-87 24-30 (75)
209 PF15330 SIT: SHP2-interacting 32.1 56 0.0012 25.8 3.2 20 62-81 2-21 (107)
210 PF06906 DUF1272: Protein of u 31.9 80 0.0017 22.1 3.5 45 147-196 6-53 (57)
211 PRK01844 hypothetical protein; 31.7 88 0.0019 23.0 3.9 8 77-84 22-29 (72)
212 PF00412 LIM: LIM domain; Int 31.6 28 0.00062 23.2 1.3 38 149-196 1-38 (58)
213 PTZ00370 STEVOR; Provisional 31.5 50 0.0011 30.7 3.2 24 64-87 259-282 (296)
214 PF07172 GRP: Glycine rich pro 31.4 47 0.001 25.7 2.6 9 64-72 9-17 (95)
215 PF06143 Baculo_11_kDa: Baculo 30.7 96 0.0021 23.5 4.1 22 58-79 35-56 (84)
216 PHA02975 hypothetical protein; 30.5 85 0.0018 22.8 3.6 19 59-77 47-65 (69)
217 PF11174 DUF2970: Protein of u 30.4 74 0.0016 22.1 3.2 25 56-80 28-52 (56)
218 PF05545 FixQ: Cbb3-type cytoc 30.0 1.3E+02 0.0029 19.8 4.4 15 67-81 13-27 (49)
219 PF14311 DUF4379: Domain of un 29.8 38 0.00082 23.0 1.7 25 165-190 31-55 (55)
220 PF15176 LRR19-TM: Leucine-ric 29.5 1.8E+02 0.0039 22.8 5.5 27 57-83 14-40 (102)
221 cd00350 rubredoxin_like Rubred 29.1 30 0.00065 21.1 1.0 20 167-192 6-25 (33)
222 PHA02819 hypothetical protein; 28.8 1.6E+02 0.0035 21.6 4.8 20 58-77 48-67 (71)
223 PHA03054 IMV membrane protein; 28.6 1.1E+02 0.0023 22.5 3.8 19 58-76 50-68 (72)
224 PF01299 Lamp: Lysosome-associ 28.6 53 0.0011 30.5 3.0 17 59-75 272-288 (306)
225 smart00064 FYVE Protein presen 27.8 53 0.0012 23.0 2.3 36 146-181 10-45 (68)
226 PF13131 DUF3951: Protein of u 27.8 1.1E+02 0.0025 20.9 3.6 26 62-87 4-30 (53)
227 PF15145 DUF4577: Domain of un 27.6 59 0.0013 26.0 2.6 27 53-79 61-87 (128)
228 PF12877 DUF3827: Domain of un 27.5 74 0.0016 32.9 3.9 8 81-88 291-298 (684)
229 PRK04778 septation ring format 27.5 61 0.0013 32.9 3.4 20 61-80 4-23 (569)
230 smart00647 IBR In Between Ring 27.1 19 0.00042 24.5 -0.2 19 162-180 40-58 (64)
231 PF15298 AJAP1_PANP_C: AJAP1/P 26.9 23 0.0005 31.1 0.2 16 77-92 117-132 (205)
232 PF04423 Rad50_zn_hook: Rad50 26.4 23 0.0005 24.0 0.1 10 186-195 22-31 (54)
233 PF05434 Tmemb_9: TMEM9; Inte 26.4 57 0.0012 27.4 2.4 28 57-84 55-82 (149)
234 TIGR02976 phageshock_pspB phag 25.8 1.3E+02 0.0028 22.2 4.0 10 78-87 21-30 (75)
235 PF13832 zf-HC5HC2H_2: PHD-zin 25.5 62 0.0014 24.9 2.5 32 146-179 55-87 (110)
236 PF07649 C1_3: C1-like domain; 25.3 40 0.00087 19.9 1.0 29 148-177 2-30 (30)
237 PF15183 MRAP: Melanocortin-2 25.2 83 0.0018 23.9 2.9 17 59-75 38-54 (90)
238 PF03554 Herpes_UL73: UL73 vir 25.0 1.4E+02 0.003 22.5 4.1 9 55-63 47-55 (82)
239 PF05279 Asp-B-Hydro_N: Aspart 25.0 45 0.00098 30.3 1.8 30 51-80 9-38 (243)
240 PF07406 NICE-3: NICE-3 protei 25.0 48 0.001 28.8 1.8 17 172-188 124-142 (186)
241 CHL00186 psaI photosystem I su 24.9 1.5E+02 0.0032 18.8 3.5 26 55-80 5-30 (36)
242 PF02124 Marek_A: Marek's dise 24.9 74 0.0016 28.3 3.0 46 32-78 154-203 (211)
243 PF04710 Pellino: Pellino; In 24.8 24 0.00053 34.2 0.0 28 164-195 306-339 (416)
244 PRK11877 psaI photosystem I re 24.7 1.3E+02 0.0028 19.4 3.3 27 54-80 8-34 (38)
245 KOG2041 WD40 repeat protein [G 24.4 48 0.001 34.9 1.9 46 146-195 1131-1185(1189)
246 PRK01253 preprotein translocas 24.3 41 0.0009 23.3 1.1 30 46-75 19-48 (54)
247 PF15102 TMEM154: TMEM154 prot 24.3 30 0.00066 28.9 0.5 6 51-56 52-57 (146)
248 PF05808 Podoplanin: Podoplani 24.3 25 0.00055 29.8 0.0 27 57-83 129-155 (162)
249 PF05151 PsbM: Photosystem II 24.2 1.7E+02 0.0037 17.9 3.6 19 58-76 7-25 (31)
250 PRK08388 putative monovalent c 24.1 2E+02 0.0042 23.0 5.1 28 59-86 78-105 (119)
251 COG3492 Uncharacterized protei 23.9 41 0.00089 25.9 1.1 12 172-183 43-54 (104)
252 KOG3054 Uncharacterized conser 23.9 90 0.002 28.5 3.4 19 63-81 4-22 (299)
253 PHA03265 envelope glycoprotein 23.8 26 0.00057 33.4 0.0 36 56-94 346-381 (402)
254 PF07438 DUF1514: Protein of u 23.6 82 0.0018 22.7 2.5 16 62-77 3-18 (66)
255 PF15050 SCIMP: SCIMP protein 23.6 61 0.0013 26.3 2.0 7 59-65 8-14 (133)
256 PF01299 Lamp: Lysosome-associ 23.2 76 0.0016 29.4 3.0 23 54-76 270-292 (306)
257 PHA03156 hypothetical protein; 23.1 1.6E+02 0.0035 22.5 4.1 28 55-82 55-83 (90)
258 KOG2068 MOT2 transcription fac 22.8 73 0.0016 30.2 2.7 48 147-195 250-298 (327)
259 PF12877 DUF3827: Domain of un 22.6 44 0.00095 34.5 1.3 33 53-85 266-298 (684)
260 TIGR03052 PS_I_psaI photosyste 22.4 99 0.0022 19.0 2.3 24 56-79 3-26 (31)
261 PF05399 EVI2A: Ectropic viral 22.3 73 0.0016 28.4 2.4 18 61-78 134-151 (227)
262 PF15069 FAM163: FAM163 family 22.3 4.2E+02 0.0091 22.1 6.8 7 184-190 91-97 (143)
263 PF08374 Protocadherin: Protoc 22.0 39 0.00085 30.1 0.7 36 54-90 31-66 (221)
264 PF04639 Baculo_E56: Baculovir 22.0 46 0.001 30.9 1.2 25 54-78 275-299 (305)
265 PRK08389 putative monovalent c 22.0 2.7E+02 0.0058 22.0 5.5 29 58-86 72-100 (114)
266 KOG2113 Predicted RNA binding 21.9 70 0.0015 30.3 2.3 48 142-195 339-387 (394)
267 PF04277 OAD_gamma: Oxaloaceta 21.7 1.8E+02 0.0039 20.9 4.2 30 56-85 5-34 (79)
268 PF04906 Tweety: Tweety; Inte 21.6 1.5E+02 0.0033 28.8 4.8 11 80-90 42-52 (406)
269 PF05776 Papilloma_E5A: Papill 21.5 1.7E+02 0.0036 22.0 3.8 27 50-76 11-37 (91)
270 PF14169 YdjO: Cold-inducible 21.3 43 0.00093 23.7 0.7 13 184-196 39-51 (59)
271 KOG1729 FYVE finger containing 20.9 16 0.00036 33.9 -1.9 37 148-185 216-252 (288)
272 PRK09702 PTS system arbutin-sp 20.9 1.5E+02 0.0032 25.2 4.0 23 58-80 9-31 (161)
273 PF06937 EURL: EURL protein; 20.9 1E+02 0.0022 28.4 3.2 44 145-188 29-74 (285)
274 COG5416 Uncharacterized integr 20.9 1E+02 0.0022 24.0 2.7 24 57-80 59-82 (98)
275 PF07282 OrfB_Zn_ribbon: Putat 20.9 1.1E+02 0.0023 21.5 2.7 35 145-179 27-63 (69)
276 PF06679 DUF1180: Protein of u 20.8 1.5E+02 0.0032 25.3 4.0 23 60-82 98-120 (163)
277 PRK11827 hypothetical protein; 20.6 33 0.00071 24.3 -0.0 20 178-197 2-21 (60)
278 PF08091 Toxin_21: Spider inse 20.6 64 0.0014 20.6 1.3 21 13-36 7-28 (39)
279 TIGR01195 oadG_fam sodium pump 20.5 1.5E+02 0.0034 22.0 3.6 16 60-75 9-24 (82)
280 PTZ00208 65 kDa invariant surf 20.4 84 0.0018 30.7 2.6 17 61-77 387-403 (436)
281 KOG1245 Chromatin remodeling c 20.4 49 0.0011 37.4 1.2 50 145-195 1107-1160(1404)
282 PF15179 Myc_target_1: Myc tar 20.4 2.2E+02 0.0048 24.8 4.9 21 62-82 25-45 (197)
283 PHA03291 envelope glycoprotein 20.3 63 0.0014 31.0 1.7 23 67-89 297-319 (401)
284 PF02977 CarbpepA_inh: Carboxy 20.3 69 0.0015 21.4 1.4 19 13-36 11-30 (46)
285 PF15048 OSTbeta: Organic solu 20.1 1.3E+02 0.0029 24.4 3.4 13 55-67 36-48 (125)
286 PHA02831 EEV host range protei 20.1 1.8E+02 0.004 26.7 4.7 14 60-73 233-246 (268)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.5e-18 Score=159.98 Aligned_cols=78 Identities=37% Similarity=0.848 Sum_probs=68.3
Q ss_pred CCCCHHHHhhcceeeeecCCCCcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCC-CCcccccccccCCCC
Q 044619 122 RGLDEVLIKSITVCKYKKGDGLIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS-NCPLCRANLFLISAS 200 (281)
Q Consensus 122 ~~l~~~~i~~lp~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l~~~~~~ 200 (281)
+.+.+..++++|...|++++.......|+||||+|+.++++++|| |+|.||..||++||..+. .||+|++++......
T Consensus 205 ~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~ 283 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGS 283 (348)
T ss_pred hhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCCC
Confidence 467889999999999999887655579999999999999999999 999999999999998775 599999988655443
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.51 E-value=4.3e-15 Score=99.11 Aligned_cols=44 Identities=48% Similarity=1.288 Sum_probs=40.4
Q ss_pred CcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccc
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCR 191 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR 191 (281)
++|+||++.|..++.+..++ |+|.||.+||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999988999998 999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.32 E-value=1.1e-12 Score=117.23 Aligned_cols=77 Identities=23% Similarity=0.640 Sum_probs=59.9
Q ss_pred CCCCCHHHHhhcceeeeecCC--CCcCCCcceeeccccccCcc----eeecCCCCCccchHHHHHHHhcCCCCccccccc
Q 044619 121 TRGLDEVLIKSITVCKYKKGD--GLIEGTDCSVCLSEFEEDES----LRLLPKCNHAFHVACVDRWLKSHSNCPLCRANL 194 (281)
Q Consensus 121 ~~~l~~~~i~~lp~~~~~~~~--~~~~~~~C~ICl~~~~~~~~----~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l 194 (281)
.++..+.+++.+|.+..+... ......+|+||++.+..++. +.+++.|+|.||..||.+|++.+.+||+||..+
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 356688999999988655432 22346789999999876531 335556999999999999999999999999998
Q ss_pred ccC
Q 044619 195 FLI 197 (281)
Q Consensus 195 ~~~ 197 (281)
..+
T Consensus 227 ~~v 229 (238)
T PHA02929 227 ISV 229 (238)
T ss_pred eEE
Confidence 654
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.27 E-value=2.1e-12 Score=95.58 Aligned_cols=46 Identities=37% Similarity=1.028 Sum_probs=35.6
Q ss_pred CCcceeeccccccC---------cceeecCCCCCccchHHHHHHHhcCCCCcccc
Q 044619 146 GTDCSVCLSEFEED---------ESLRLLPKCNHAFHVACVDRWLKSHSNCPLCR 191 (281)
Q Consensus 146 ~~~C~ICl~~~~~~---------~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR 191 (281)
.+.|+||++.|.+. +....+..|||.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45699999999432 22233334999999999999999999999998
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.6e-11 Score=114.07 Aligned_cols=53 Identities=32% Similarity=0.971 Sum_probs=44.2
Q ss_pred CCCcceeeccc-cccC---------cceeecCCCCCccchHHHHHHHhcCCCCcccccccccCC
Q 044619 145 EGTDCSVCLSE-FEED---------ESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLIS 198 (281)
Q Consensus 145 ~~~~C~ICl~~-~~~~---------~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~ 198 (281)
++..|+||+++ |..+ .+.+.|| |||+||.+|++.|++++.+||+||.++....
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ifd~ 348 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIFDQ 348 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCcccccc
Confidence 46789999999 4433 2457788 9999999999999999999999999965443
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=9.9e-12 Score=112.71 Aligned_cols=50 Identities=46% Similarity=1.256 Sum_probs=45.5
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc-CCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS-HSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~ 195 (281)
.+-+|+|||+.|-+++.+++|| |+|.||..|+++|+.. +..||+||..+.
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCC
Confidence 3578999999999999999999 9999999999999984 557999999885
No 7
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.00 E-value=2.8e-10 Score=85.82 Aligned_cols=52 Identities=31% Similarity=0.876 Sum_probs=41.0
Q ss_pred CCCcceeecccccc---------CcceeecCCCCCccchHHHHHHHhc---CCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEE---------DESLRLLPKCNHAFHVACVDRWLKS---HSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~---------~~~~~~lp~C~H~Fh~~Ci~~Wl~~---~~~CP~CR~~l~~ 196 (281)
+++.|.||+..|.. .+...++..|+|.||..||.+||.. +..||+||+++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 36789999999983 1223345579999999999999975 4589999998753
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.94 E-value=7.6e-10 Score=72.34 Aligned_cols=44 Identities=52% Similarity=1.331 Sum_probs=36.5
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHhc-CCCCccccccc
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS-HSNCPLCRANL 194 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l 194 (281)
.|+||++.+. +.+.+++ |+|.||..|+..|++. +..||+||..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999983 3455555 9999999999999987 77899998764
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.91 E-value=6.5e-10 Score=76.03 Aligned_cols=47 Identities=34% Similarity=0.908 Sum_probs=39.2
Q ss_pred CCcceeeccccccCcceeecCCCCCc-cchHHHHHHHhcCCCCccccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHA-FHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
...|.||++.... +.++| |||. |+..|+..|++.+..||+||+++..
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 4689999998654 56777 9999 9999999999999999999999853
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.86 E-value=1.2e-09 Score=70.87 Aligned_cols=39 Identities=33% Similarity=1.154 Sum_probs=32.7
Q ss_pred ceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccc
Q 044619 149 CSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLC 190 (281)
Q Consensus 149 C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~C 190 (281)
|+||++.+.+ .+.+++ |||.|+..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 7899999887 445676 99999999999999999999998
No 11
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.83 E-value=1.5e-09 Score=80.11 Aligned_cols=51 Identities=37% Similarity=0.757 Sum_probs=39.5
Q ss_pred CCcceeecccccc------------CcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 146 GTDCSVCLSEFEE------------DESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 146 ~~~C~ICl~~~~~------------~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
.+.|+||...|.. ++....-..|+|.||..||.+||..+..||++|+.+..
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 3567777766642 23344445699999999999999999999999998753
No 12
>PHA02926 zinc finger-like protein; Provisional
Probab=98.82 E-value=1.6e-09 Score=94.92 Aligned_cols=55 Identities=29% Similarity=0.838 Sum_probs=42.4
Q ss_pred CCCcceeeccccccC-----cceeecCCCCCccchHHHHHHHhcC------CCCcccccccccCCC
Q 044619 145 EGTDCSVCLSEFEED-----ESLRLLPKCNHAFHVACVDRWLKSH------SNCPLCRANLFLISA 199 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~-----~~~~~lp~C~H~Fh~~Ci~~Wl~~~------~~CP~CR~~l~~~~~ 199 (281)
...+|+|||+..-+. ..-.+|+.|+|.||..||..|.+.+ .+||+||..+.....
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 467899999986432 1235677799999999999999753 359999998875543
No 13
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.9e-09 Score=96.40 Aligned_cols=47 Identities=32% Similarity=0.840 Sum_probs=41.4
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
...|.+||+..+.+ ..+| |||+||..||..|...+..||+||..+..
T Consensus 239 ~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 239 TRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCCC
Confidence 46799999998776 5566 99999999999999999999999998854
No 14
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.3e-09 Score=108.77 Aligned_cols=51 Identities=33% Similarity=0.913 Sum_probs=44.8
Q ss_pred CCCcceeeccccccCcc--eeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEEDES--LRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~--~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
....|+||+|.+..+.. .++++ |+|+||..|+..|++++++||+||..+..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 46789999999998655 67888 99999999999999999999999995543
No 15
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.81 E-value=3.5e-09 Score=91.55 Aligned_cols=48 Identities=25% Similarity=0.820 Sum_probs=39.4
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc----------------CCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----------------HSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----------------~~~CP~CR~~l~~ 196 (281)
+..+|+||++.+.+. .+++ |||.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 356899999998765 4565 9999999999999853 2479999999965
No 16
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=5.2e-09 Score=88.73 Aligned_cols=50 Identities=30% Similarity=0.741 Sum_probs=42.3
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccC
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
...|+|||+.+.+. +.+..+|||+||..||+.-++....||+||+.|...
T Consensus 131 ~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 131 TYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccCCCceecchhhc--cccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 46799999999874 334447999999999999999999999999977543
No 17
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.1e-08 Score=90.20 Aligned_cols=51 Identities=27% Similarity=0.755 Sum_probs=40.5
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCC---CCcccccccccCCC
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS---NCPLCRANLFLISA 199 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~---~CP~CR~~l~~~~~ 199 (281)
...+|.|||+.-+++ .++. |||+||..||.+||..+. .||+|+..+.....
T Consensus 46 ~~FdCNICLd~akdP---VvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDP---VVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CceeeeeeccccCCC---EEee-cccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 356899999986664 3444 999999999999997654 58999999865543
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.65 E-value=1.9e-08 Score=67.00 Aligned_cols=44 Identities=30% Similarity=0.898 Sum_probs=37.7
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccc
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRA 192 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~ 192 (281)
.|.||++.|.......+++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4899999996555677776 9999999999999866778999985
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.63 E-value=1.5e-08 Score=66.15 Aligned_cols=39 Identities=46% Similarity=1.248 Sum_probs=33.0
Q ss_pred ceeeccccccCcceeecCCCCCccchHHHHHHHh--cCCCCccc
Q 044619 149 CSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLK--SHSNCPLC 190 (281)
Q Consensus 149 C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~--~~~~CP~C 190 (281)
|+||++.+.... .+++ |||.|+..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 789999988753 4676 999999999999998 45579988
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.62 E-value=2.8e-08 Score=62.52 Aligned_cols=38 Identities=42% Similarity=1.272 Sum_probs=31.8
Q ss_pred ceeeccccccCcceeecCCCCCccchHHHHHHHh-cCCCCccc
Q 044619 149 CSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLK-SHSNCPLC 190 (281)
Q Consensus 149 C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~-~~~~CP~C 190 (281)
|+||++.. ....+++ |+|.||..|++.|++ .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999883 3456776 999999999999998 66679987
No 21
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.59 E-value=2.2e-08 Score=66.12 Aligned_cols=38 Identities=39% Similarity=1.027 Sum_probs=28.8
Q ss_pred ceeeccccccCcceeecCCCCCccchHHHHHHHhcC----CCCccc
Q 044619 149 CSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSH----SNCPLC 190 (281)
Q Consensus 149 C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~----~~CP~C 190 (281)
|+||++.|.++ ..|+ |||.|+..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999987 4565 99999999999999654 369987
No 22
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1e-08 Score=75.09 Aligned_cols=51 Identities=31% Similarity=0.861 Sum_probs=39.8
Q ss_pred CCcceeecccccc---------CcceeecCCCCCccchHHHHHHHhcC---CCCccccccccc
Q 044619 146 GTDCSVCLSEFEE---------DESLRLLPKCNHAFHVACVDRWLKSH---SNCPLCRANLFL 196 (281)
Q Consensus 146 ~~~C~ICl~~~~~---------~~~~~~lp~C~H~Fh~~Ci~~Wl~~~---~~CP~CR~~l~~ 196 (281)
.+.|.||.-.|.. ++...++..|.|.||..||.+|+... ..||+||+.+..
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 4589999999874 33344555799999999999999654 469999998753
No 23
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.53 E-value=9.8e-08 Score=67.73 Aligned_cols=45 Identities=22% Similarity=0.543 Sum_probs=39.7
Q ss_pred CcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
..|+||++.+.++ .+++ |||+|+..||..|++.+.+||+|+..+.
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 4699999999885 4566 9999999999999999999999998874
No 24
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3.2e-08 Score=76.63 Aligned_cols=52 Identities=35% Similarity=0.785 Sum_probs=40.5
Q ss_pred cCCCcceeeccccc-------------cCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 144 IEGTDCSVCLSEFE-------------EDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 144 ~~~~~C~ICl~~~~-------------~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
...+.|+||..-+- .++.+..-..|+|.||..||.+||+.+..||+|-+...
T Consensus 44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 35678999986553 23344444569999999999999999999999987664
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.42 E-value=1.5e-07 Score=90.16 Aligned_cols=50 Identities=34% Similarity=0.724 Sum_probs=42.7
Q ss_pred CcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 143 LIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
+.....|+||++.|... .+++ |+|.||..||..|+..+..||+||..+..
T Consensus 23 Le~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 34467999999999775 3566 99999999999999998899999998864
No 26
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=5.1e-07 Score=87.01 Aligned_cols=50 Identities=32% Similarity=0.898 Sum_probs=39.0
Q ss_pred CCCcceeeccccccCc--------------ceeecCCCCCccchHHHHHHHhc-CCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDE--------------SLRLLPKCNHAFHVACVDRWLKS-HSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~--------------~~~~lp~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~ 195 (281)
...+|+|||..+.--. ...++| |.|+||..|+.+|+.. +-.||+||+++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 3568999999875311 123457 9999999999999995 558999999985
No 27
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.34 E-value=8.7e-08 Score=97.93 Aligned_cols=68 Identities=25% Similarity=0.688 Sum_probs=47.9
Q ss_pred HhhcceeeeecCCCCcCCCcceeeccccccCc---ceeecCCCCCccchHHHHHHHhc--CCCCccccccccc
Q 044619 129 IKSITVCKYKKGDGLIEGTDCSVCLSEFEEDE---SLRLLPKCNHAFHVACVDRWLKS--HSNCPLCRANLFL 196 (281)
Q Consensus 129 i~~lp~~~~~~~~~~~~~~~C~ICl~~~~~~~---~~~~lp~C~H~Fh~~Ci~~Wl~~--~~~CP~CR~~l~~ 196 (281)
.+.|-.++.+-...+....+|+||+..+..-+ .-...++|.|.||..|+.+|+++ +++||+||..++.
T Consensus 1452 ~D~l~l~kkNi~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1452 MDLLGLWKKNIDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred HHHHHHHHhhhhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 34444444444455667789999999887211 11334579999999999999976 4579999987753
No 28
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.23 E-value=9.6e-07 Score=60.25 Aligned_cols=42 Identities=24% Similarity=0.839 Sum_probs=32.7
Q ss_pred cceeeccccccCcceeecCCCC-----CccchHHHHHHHhcC--CCCcccc
Q 044619 148 DCSVCLSEFEEDESLRLLPKCN-----HAFHVACVDRWLKSH--SNCPLCR 191 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~-----H~Fh~~Ci~~Wl~~~--~~CP~CR 191 (281)
.|-||++ ...++...+.| |. |.+|..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 34444555788 86 899999999999654 4899995
No 29
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=5.8e-07 Score=80.84 Aligned_cols=51 Identities=27% Similarity=0.752 Sum_probs=41.9
Q ss_pred cCCCcceeeccccccCc-------ceeecCCCCCccchHHHHHHH--hcCCCCcccccccc
Q 044619 144 IEGTDCSVCLSEFEEDE-------SLRLLPKCNHAFHVACVDRWL--KSHSNCPLCRANLF 195 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~-------~~~~lp~C~H~Fh~~Ci~~Wl--~~~~~CP~CR~~l~ 195 (281)
.++..|+||-..+.... ++-.|. |+|+||..||+.|. -.+.+||.|+..+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 45678999998887655 566786 99999999999996 45669999987774
No 30
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.11 E-value=6.5e-07 Score=82.82 Aligned_cols=48 Identities=25% Similarity=0.737 Sum_probs=42.7
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
....|.||.+.|..+ .++| |+|.||.-||...|..+..||.|+.++..
T Consensus 22 ~lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccch
Confidence 356899999999886 5667 99999999999999999999999998853
No 31
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.10 E-value=1.2e-06 Score=83.63 Aligned_cols=52 Identities=38% Similarity=0.839 Sum_probs=42.0
Q ss_pred CCcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 142 GLIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 142 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
+..+..+|+|||+.+.....-.+..-|.|.||..|+..| ...+||+||....
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence 456778999999999876533333349999999999999 5779999998775
No 32
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.8e-06 Score=77.60 Aligned_cols=48 Identities=38% Similarity=0.856 Sum_probs=39.7
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHH-HHhcCCC-CcccccccccC
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDR-WLKSHSN-CPLCRANLFLI 197 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~-Wl~~~~~-CP~CR~~l~~~ 197 (281)
+..|+||++..... ..++ |||+||..||.. |=+.+.- ||+||+.+...
T Consensus 215 d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 215 DYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 56799999987665 4566 999999999999 9777765 99999988644
No 33
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.06 E-value=7.2e-07 Score=65.40 Aligned_cols=51 Identities=27% Similarity=0.753 Sum_probs=24.4
Q ss_pred CCcceeeccccc-cCcc-eeec--CCCCCccchHHHHHHHhc----C-------CCCccccccccc
Q 044619 146 GTDCSVCLSEFE-EDES-LRLL--PKCNHAFHVACVDRWLKS----H-------SNCPLCRANLFL 196 (281)
Q Consensus 146 ~~~C~ICl~~~~-~~~~-~~~l--p~C~H~Fh~~Ci~~Wl~~----~-------~~CP~CR~~l~~ 196 (281)
..+|.||+..+. .++. ..+. +.|++.||..||.+||+. + ..||.|+++|..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 358999999876 3322 2333 369999999999999963 1 149999998853
No 34
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.96 E-value=4.9e-06 Score=55.18 Aligned_cols=34 Identities=32% Similarity=0.850 Sum_probs=21.5
Q ss_pred ceeeccccccCc-ceeecCCCCCccchHHHHHHHhcC
Q 044619 149 CSVCLSEFEEDE-SLRLLPKCNHAFHVACVDRWLKSH 184 (281)
Q Consensus 149 C~ICl~~~~~~~-~~~~lp~C~H~Fh~~Ci~~Wl~~~ 184 (281)
|+||++ |...+ ...+|+ |||+|+.+||.++++.+
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 76544 447798 99999999999999854
No 35
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.91 E-value=3.9e-06 Score=76.30 Aligned_cols=47 Identities=26% Similarity=0.627 Sum_probs=40.5
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
....|-||-+.|..+ ..+ .|||-||.-||...|..+..||+||.+.-
T Consensus 24 s~lrC~IC~~~i~ip---~~T-tCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRISIP---CET-TCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheeecc---eec-ccccchhHHHHHHHhcCCCCCccccccHH
Confidence 457899999998875 334 49999999999999999999999998763
No 36
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.88 E-value=9.1e-06 Score=75.28 Aligned_cols=52 Identities=23% Similarity=0.517 Sum_probs=38.7
Q ss_pred CCcceeeccc--cccCcceeecCCCCCccchHHHHHHH-hcCCCCcccccccccCC
Q 044619 146 GTDCSVCLSE--FEEDESLRLLPKCNHAFHVACVDRWL-KSHSNCPLCRANLFLIS 198 (281)
Q Consensus 146 ~~~C~ICl~~--~~~~~~~~~lp~C~H~Fh~~Ci~~Wl-~~~~~CP~CR~~l~~~~ 198 (281)
...|++|... +.....+.+.+ |||.||..||+..+ .....||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4589999995 33333444444 99999999999965 44558999999886654
No 37
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.83 E-value=8.4e-06 Score=60.09 Aligned_cols=47 Identities=21% Similarity=0.473 Sum_probs=36.5
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhc-CCCCccccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS-HSNCPLCRANLFL 196 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~ 196 (281)
...|+|+.+.|.++ .+++ +||.|...||..||+. +.+||+|+.++..
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 46899999999986 4566 9999999999999998 8899999988854
No 38
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=8.4e-06 Score=79.28 Aligned_cols=47 Identities=26% Similarity=0.739 Sum_probs=37.7
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcC-----CCCccccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSH-----SNCPLCRANLFL 196 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~-----~~CP~CR~~l~~ 196 (281)
...|+|||+..... ++..|||+||..||-..+... ..||+||..+..
T Consensus 186 ~~~CPICL~~~~~p----~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP----VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc----cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 56899999986554 233499999999999988554 379999999876
No 39
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=9.4e-06 Score=72.45 Aligned_cols=44 Identities=43% Similarity=0.951 Sum_probs=38.9
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccc
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCR 191 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR 191 (281)
.+...|.||++.|... .+++ |+|.||..||..++.....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 3567899999999998 6787 999999999999988556899999
No 40
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=2.8e-05 Score=73.33 Aligned_cols=56 Identities=29% Similarity=0.914 Sum_probs=43.9
Q ss_pred CCcceeeccccccCc----ceeecCCCCCccchHHHHHHH--hc-----CCCCcccccccccCCCCC
Q 044619 146 GTDCSVCLSEFEEDE----SLRLLPKCNHAFHVACVDRWL--KS-----HSNCPLCRANLFLISASP 201 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~----~~~~lp~C~H~Fh~~Ci~~Wl--~~-----~~~CP~CR~~l~~~~~~~ 201 (281)
...|.||++...+.. ...+||+|.|.||..||..|- .. .+.||.||.....+....
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~ 227 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSS 227 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccc
Confidence 568999999877643 145678899999999999998 33 468999999887665543
No 41
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=3.3e-05 Score=72.83 Aligned_cols=45 Identities=29% Similarity=0.999 Sum_probs=35.4
Q ss_pred CcceeeccccccCcceeecCCCCCccchHHHHHHHhcC---CCCcccc
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSH---SNCPLCR 191 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~---~~CP~CR 191 (281)
..|.||-+-+.....+.-...|||+||..|+..|+..- .+||.||
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 57999955555555565555699999999999999753 4799999
No 42
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.56 E-value=1.2e-05 Score=57.41 Aligned_cols=46 Identities=30% Similarity=0.768 Sum_probs=24.1
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
+...|++|.+.+.++. .+.+|.|+|+..||..-+. .-||+|+.+..
T Consensus 6 ~lLrCs~C~~~l~~pv---~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 6 ELLRCSICFDILKEPV---CLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp HTTS-SSS-S--SS-B------SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred HhcCCcHHHHHhcCCc---eeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 3568999999998862 3346999999999988544 45999987764
No 43
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.51 E-value=6.8e-05 Score=68.63 Aligned_cols=56 Identities=29% Similarity=0.748 Sum_probs=46.0
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHh-----------------------cCCCCcccccccccCCCCC
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLK-----------------------SHSNCPLCRANLFLISASP 201 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~-----------------------~~~~CP~CR~~l~~~~~~~ 201 (281)
....|.|||.-|..++...+++ |.|.||..|+.++|. .+..||+||..|.......
T Consensus 114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~sl 192 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENSL 192 (368)
T ss_pred CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccccce
Confidence 4578999999999999888897 999999999988762 1236999999997665543
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=1.1e-05 Score=75.15 Aligned_cols=59 Identities=27% Similarity=0.548 Sum_probs=46.5
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc-CCCCcccccccccCCCCCCCCCC
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS-HSNCPLCRANLFLISASPQLPPI 206 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~~~~~~~~~~~ 206 (281)
....|.|||+.++.. +.++.|.|-||.+||.+-++. ++.||.||+.+.........+..
T Consensus 42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~f 101 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNF 101 (381)
T ss_pred hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccH
Confidence 356899999998875 334479999999999988865 66899999999877666554443
No 45
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.42 E-value=3.7e-05 Score=77.92 Aligned_cols=55 Identities=20% Similarity=0.450 Sum_probs=44.9
Q ss_pred CcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccCCCCCC
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLISASPQ 202 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~ 202 (281)
..|.+|+..+.++......+ |+|.||..||..|-+.-.+||+||..+..+.....
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~eS 178 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLES 178 (1134)
T ss_pred hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhheeeeecc
Confidence 46999999888766555554 99999999999999999999999998866544433
No 46
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00011 Score=68.79 Aligned_cols=48 Identities=33% Similarity=0.819 Sum_probs=40.3
Q ss_pred CCCcceeeccccccCcceeecCCCCC-ccchHHHHHHHhcCCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNH-AFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H-~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
++.+|.|||.+-.+ +.+|| |.| ..|..|-+.-.-.++.||+||+++..
T Consensus 289 ~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 289 SGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 35689999998554 47899 999 57999999887788999999999854
No 47
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00018 Score=68.33 Aligned_cols=50 Identities=30% Similarity=0.858 Sum_probs=37.3
Q ss_pred CCcceeeccccccCc-ceeecCCCCCccchHHHHHHHhc--CCCCcccccccc
Q 044619 146 GTDCSVCLSEFEEDE-SLRLLPKCNHAFHVACVDRWLKS--HSNCPLCRANLF 195 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~-~~~~lp~C~H~Fh~~Ci~~Wl~~--~~~CP~CR~~l~ 195 (281)
+..|+|||+.+...- .-.+.+.|||.|-.+||++||.. ...||.|...-.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 578999999987533 33334469999999999999952 235999965443
No 48
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00013 Score=50.47 Aligned_cols=47 Identities=30% Similarity=0.645 Sum_probs=34.5
Q ss_pred CCcceeeccccccCcceeecCCCCCc-cchHHHHH-HHhcCCCCccccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHA-FHVACVDR-WLKSHSNCPLCRANLFL 196 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~-Wl~~~~~CP~CR~~l~~ 196 (281)
.++|.||++.-.+. +|-.|||. .+..|-.+ |-..+..||+||+++..
T Consensus 7 ~dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 47999999875542 33359995 67788554 44478899999999854
No 49
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00019 Score=72.88 Aligned_cols=49 Identities=31% Similarity=0.703 Sum_probs=39.1
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHh-cCCCCcccccccccC
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLK-SHSNCPLCRANLFLI 197 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~-~~~~CP~CR~~l~~~ 197 (281)
+...|++|-..+++- ++++|+|+||..||.+-+. ++..||.|-+.|...
T Consensus 642 ~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred hceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 456899999877662 3446999999999999985 566899998888544
No 50
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.00 E-value=0.00054 Score=64.93 Aligned_cols=49 Identities=33% Similarity=0.764 Sum_probs=39.9
Q ss_pred CCcceeecccccc-CcceeecCCCCCccchHHHHHHHhcCC--CCcccccccc
Q 044619 146 GTDCSVCLSEFEE-DESLRLLPKCNHAFHVACVDRWLKSHS--NCPLCRANLF 195 (281)
Q Consensus 146 ~~~C~ICl~~~~~-~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~--~CP~CR~~l~ 195 (281)
+..|..|-+.+.. ++.+.-|| |.|+||..|+.+.|.++. +||.||+-..
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 4579999988864 45677898 999999999999997765 7999995443
No 51
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00044 Score=63.47 Aligned_cols=48 Identities=23% Similarity=0.490 Sum_probs=37.8
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhc-CCCCcccccccccC
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS-HSNCPLCRANLFLI 197 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~~ 197 (281)
..+|+||+....-+ ..|+ |+|.||.-||+.=... ..+|++||.++...
T Consensus 7 ~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 46899999886554 4565 9999999999976554 45699999999653
No 52
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.90 E-value=0.00031 Score=66.70 Aligned_cols=46 Identities=28% Similarity=0.864 Sum_probs=37.8
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHhc--CCCCcccccccccC
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS--HSNCPLCRANLFLI 197 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~--~~~CP~CR~~l~~~ 197 (281)
.|-||-+. +..|++-| |||..|..|+..|-.. ..+||.||..+.-.
T Consensus 371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 49999875 45678888 9999999999999743 56899999998543
No 53
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00067 Score=65.33 Aligned_cols=50 Identities=34% Similarity=0.822 Sum_probs=42.5
Q ss_pred CcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 143 LIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
......|.||+..+... ..+| |||.|+..||++-+....-||.||..+..
T Consensus 81 ~~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 34567899999998876 4557 99999999999988878889999999975
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.48 E-value=0.0016 Score=62.92 Aligned_cols=54 Identities=28% Similarity=0.630 Sum_probs=44.2
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccCCCC
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLISAS 200 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 200 (281)
.+...|++|...+.++... + .|||.||..|+..|+..+..||.|+..+......
T Consensus 19 ~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 3467899999999886332 3 4999999999999999999999999888654433
No 55
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.46 E-value=0.001 Score=54.57 Aligned_cols=38 Identities=16% Similarity=0.652 Sum_probs=30.6
Q ss_pred CCcceeeccccccCcceeecCCCC------CccchHHHHHHHhcC
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCN------HAFHVACVDRWLKSH 184 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~------H~Fh~~Ci~~Wl~~~ 184 (281)
..+|.||++.+...+.+..++ |+ |+||.+|+.+|-+.+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhc
Confidence 568999999999855666665 66 999999999995433
No 56
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0016 Score=54.93 Aligned_cols=29 Identities=28% Similarity=0.833 Sum_probs=26.6
Q ss_pred CCCcceeeccccccCcceeecCCCCCccch
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHV 174 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~ 174 (281)
...+|.||||++..++.+..|| |-.+||+
T Consensus 176 dkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 4568999999999999999999 9999996
No 57
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.23 E-value=0.0015 Score=45.86 Aligned_cols=41 Identities=24% Similarity=0.731 Sum_probs=27.5
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcC--CCCcc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSH--SNCPL 189 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~--~~CP~ 189 (281)
...|+|.+..|+++ ++-. +|+|+|-+..|..||+++ ..||+
T Consensus 11 ~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 56899999999875 3333 599999999999999443 36998
No 58
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.14 E-value=0.0014 Score=60.88 Aligned_cols=49 Identities=20% Similarity=0.611 Sum_probs=41.6
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
.....|.+|-..|-+...+ . .|-|.||..||.+.|.....||+|...+.
T Consensus 13 n~~itC~LC~GYliDATTI--~-eCLHTFCkSCivk~l~~~~~CP~C~i~ih 61 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTI--T-ECLHTFCKSCIVKYLEESKYCPTCDIVIH 61 (331)
T ss_pred ccceehhhccceeecchhH--H-HHHHHHHHHHHHHHHHHhccCCccceecc
Confidence 3467899999999886444 3 49999999999999999999999987774
No 59
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0052 Score=54.44 Aligned_cols=51 Identities=25% Similarity=0.711 Sum_probs=43.3
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc--------CCCCcccccccccC
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS--------HSNCPLCRANLFLI 197 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~--------~~~CP~CR~~l~~~ 197 (281)
....|..|--.+..++.+++. |-|+||..|+..|-.. .-.||.|-.+++..
T Consensus 49 Y~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 356899999999999999875 9999999999999753 23699999998754
No 60
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.11 E-value=0.0042 Score=66.98 Aligned_cols=65 Identities=25% Similarity=0.558 Sum_probs=45.5
Q ss_pred cceeeeecCCCC-cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCC----------CCcccccccccC
Q 044619 132 ITVCKYKKGDGL-IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS----------NCPLCRANLFLI 197 (281)
Q Consensus 132 lp~~~~~~~~~~-~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~----------~CP~CR~~l~~~ 197 (281)
||-..-++.... ..++.|.||+-+--.....+.|. |+|+||..|...-|+++. +||+|+.++...
T Consensus 3471 LPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3471 LPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 444443333322 23567999998766555667785 999999999987776543 699999888543
No 61
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.0067 Score=58.03 Aligned_cols=47 Identities=26% Similarity=0.718 Sum_probs=38.4
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcC--------CCCccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSH--------SNCPLCRA 192 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~--------~~CP~CR~ 192 (281)
....|.||+++.........+| |+|+||..|+..++..+ -.||-+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3568999999988878899998 99999999999998532 25776644
No 62
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.64 E-value=0.008 Score=62.02 Aligned_cols=51 Identities=24% Similarity=0.716 Sum_probs=39.9
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc-------CCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS-------HSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~-------~~~CP~CR~~l~ 195 (281)
+..+|.||++.+...+.+.-...|-|+||..||.+|-++ ...||.|.....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 345799999999887776555568899999999999864 225999985544
No 63
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.61 E-value=0.006 Score=41.09 Aligned_cols=40 Identities=38% Similarity=1.064 Sum_probs=26.3
Q ss_pred ceeeccccccCcceeecCCCC-----CccchHHHHHHHhc--CCCCccc
Q 044619 149 CSVCLSEFEEDESLRLLPKCN-----HAFHVACVDRWLKS--HSNCPLC 190 (281)
Q Consensus 149 C~ICl~~~~~~~~~~~lp~C~-----H~Fh~~Ci~~Wl~~--~~~CP~C 190 (281)
|-||++.-.... ..+.| |+ ...|..|+.+|+.. +..|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 568888876655 33455 55 37899999999974 4568887
No 64
>PHA03096 p28-like protein; Provisional
Probab=95.33 E-value=0.0086 Score=55.37 Aligned_cols=48 Identities=17% Similarity=0.497 Sum_probs=34.8
Q ss_pred CcceeeccccccCc----ceeecCCCCCccchHHHHHHHhcCC---C---Cccccccc
Q 044619 147 TDCSVCLSEFEEDE----SLRLLPKCNHAFHVACVDRWLKSHS---N---CPLCRANL 194 (281)
Q Consensus 147 ~~C~ICl~~~~~~~----~~~~lp~C~H~Fh~~Ci~~Wl~~~~---~---CP~CR~~l 194 (281)
-.|.||++...... .-.+|+.|.|.|+..||..|..... + ||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 57999999877532 3356888999999999999985432 3 55554444
No 65
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.29 E-value=0.009 Score=52.00 Aligned_cols=45 Identities=22% Similarity=0.598 Sum_probs=38.1
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANL 194 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l 194 (281)
...|.||-.+|..+ .++ .|||.||..|..+-++....|-+|.+..
T Consensus 196 PF~C~iCKkdy~sp---vvt-~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESP---VVT-ECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccch---hhh-hcchhHHHHHHHHHhccCCcceecchhh
Confidence 34799999999886 344 5999999999999999999999997654
No 66
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.26 E-value=0.007 Score=46.94 Aligned_cols=32 Identities=34% Similarity=0.864 Sum_probs=26.4
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHH
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVD 178 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~ 178 (281)
+...|++|-..+..+ ...+-| |||+||..|+.
T Consensus 77 ~~~~C~vC~k~l~~~-~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNS-VFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCc-eEEEeC-CCeEEeccccc
Confidence 356899999999884 556677 99999999975
No 67
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.035 Score=51.80 Aligned_cols=47 Identities=19% Similarity=0.454 Sum_probs=37.3
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANL 194 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l 194 (281)
....|+||+..-+++..+. .-|.+||..||-..+.+++.||+=..+.
T Consensus 299 ~~~~CpvClk~r~Nptvl~---vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLE---VSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCceEE---ecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 3568999999888763332 3799999999999999999999754443
No 68
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.80 E-value=0.034 Score=51.29 Aligned_cols=46 Identities=28% Similarity=0.700 Sum_probs=35.6
Q ss_pred CcceeeccccccCcceeecCCCCCccchHHHHHHHh-cCCCCccc-ccccc
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLK-SHSNCPLC-RANLF 195 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~-~~~~CP~C-R~~l~ 195 (281)
..|..|-..+....+ ++.|+|.||..||..-|. ....||.| |+.+.
T Consensus 275 LkCplc~~Llrnp~k---T~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl 322 (427)
T COG5222 275 LKCPLCHCLLRNPMK---TPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL 322 (427)
T ss_pred ccCcchhhhhhCccc---CccccchHHHHHHhhhhhhccccCCCcccccch
Confidence 679999888777633 357999999999997765 55689999 44553
No 69
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=0.026 Score=50.70 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=47.2
Q ss_pred CcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccCCCC
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLISAS 200 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 200 (281)
..|+||.+.+.+.....+|..|||+|...|.++.++....||+|-.++......
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 359999999999887777777999999999999999999999999888665443
No 70
>PHA02862 5L protein; Provisional
Probab=94.66 E-value=0.03 Score=46.46 Aligned_cols=47 Identities=21% Similarity=0.631 Sum_probs=34.9
Q ss_pred CCcceeeccccccCcceeecCCCC-----CccchHHHHHHHhc--CCCCcccccccccC
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCN-----HAFHVACVDRWLKS--HSNCPLCRANLFLI 197 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~-----H~Fh~~Ci~~Wl~~--~~~CP~CR~~l~~~ 197 (281)
.+.|=||++.-.+. .-| |. ..-|..|+.+|+.. +..|++|+.+....
T Consensus 2 ~diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 46899999984332 244 54 67899999999964 44799999988543
No 71
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.48 E-value=0.018 Score=51.51 Aligned_cols=50 Identities=26% Similarity=0.648 Sum_probs=35.1
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccCCCCC
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLISASP 201 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~ 201 (281)
.|..|.---. ++...++. |+|+||..|...= ....||+||+++.......
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~--~~~~C~lCkk~ir~i~l~~ 54 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKAS--SPDVCPLCKKSIRIIQLNR 54 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccC--Cccccccccceeeeeeccc
Confidence 4776665433 66777775 9999999997762 2228999999976554443
No 72
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.037 Score=50.47 Aligned_cols=48 Identities=27% Similarity=0.514 Sum_probs=36.3
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc--CCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS--HSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~--~~~CP~CR~~l~ 195 (281)
...+|++|-+.-..+. .+. +|+|+||..||.+=+.. .-+||.|-.++.
T Consensus 238 ~~~~C~~Cg~~PtiP~--~~~-~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPH--VIG-KCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCe--eec-cccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4678999998755542 233 49999999999987653 458999977765
No 73
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.23 E-value=0.055 Score=45.65 Aligned_cols=51 Identities=18% Similarity=0.636 Sum_probs=36.4
Q ss_pred cCCCcceeeccccccCcceeecC-CCCC---ccchHHHHHHHhcC--CCCcccccccccCC
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLP-KCNH---AFHVACVDRWLKSH--SNCPLCRANLFLIS 198 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp-~C~H---~Fh~~Ci~~Wl~~~--~~CP~CR~~l~~~~ 198 (281)
..+..|=||.++-.. . ..| .|.. .-|.+|+.+|+..+ ..|++|+.+.....
T Consensus 6 ~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 6 LMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK 62 (162)
T ss_pred CCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence 356789999988432 2 234 2444 66999999999654 47999998886553
No 74
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.0045 Score=58.74 Aligned_cols=50 Identities=22% Similarity=0.628 Sum_probs=43.3
Q ss_pred CCcceeeccccccC-cceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 146 GTDCSVCLSEFEED-ESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 146 ~~~C~ICl~~~~~~-~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
...|+||.+.++.. +++..+. |||.+|.+||.+||.....||.||+.|..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 35799999999876 5666675 99999999999999999999999999854
No 75
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.067 Score=50.49 Aligned_cols=49 Identities=20% Similarity=0.563 Sum_probs=40.7
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
.++..|+||+-. +-.....| |+|.=|..||.+.|.+.+.|=.|+..+.+
T Consensus 420 sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 467789999764 33345677 99999999999999999999999988854
No 76
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.045 Score=51.65 Aligned_cols=45 Identities=31% Similarity=0.674 Sum_probs=32.7
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
..+.|.||+++..+ ...+| |||+-+ |..--. ....||+||..+..
T Consensus 304 ~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs~-~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCSK-HLPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCccc---eeeec-CCcEEE--chHHHh-hCCCCchhHHHHHH
Confidence 35789999999776 45677 999966 655432 23359999998754
No 77
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.049 Score=46.75 Aligned_cols=32 Identities=34% Similarity=0.976 Sum_probs=25.9
Q ss_pred CCCCccchHHHHHHHhc-----CC------CCcccccccccCC
Q 044619 167 KCNHAFHVACVDRWLKS-----HS------NCPLCRANLFLIS 198 (281)
Q Consensus 167 ~C~H~Fh~~Ci~~Wl~~-----~~------~CP~CR~~l~~~~ 198 (281)
.||..||.-|+..||+. ++ .||.|-.++....
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 49999999999999964 21 5999998886543
No 78
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=93.77 E-value=0.031 Score=55.21 Aligned_cols=50 Identities=24% Similarity=0.636 Sum_probs=38.3
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc-----CCCCcccccccccC
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS-----HSNCPLCRANLFLI 197 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~-----~~~CP~CR~~l~~~ 197 (281)
.+...|.+|-+.-++. ... .|.|.||.-||.+++.. +.+||.|...|...
T Consensus 534 k~~~~C~lc~d~aed~---i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDY---IES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhhh---Hhh-hhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 4556899999875543 344 49999999999998843 45899998888654
No 79
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.67 E-value=0.03 Score=57.98 Aligned_cols=44 Identities=23% Similarity=0.746 Sum_probs=34.4
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccc
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRAN 193 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~ 193 (281)
.....|..|-..++-+ .|.. .|||.||.+|+. .....||-|+..
T Consensus 838 ~q~skCs~C~~~LdlP-~VhF--~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 838 FQVSKCSACEGTLDLP-FVHF--LCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeeeeecccCCccccc-eeee--ecccHHHHHhhc---cCcccCCccchh
Confidence 3457899999988876 3333 499999999999 456689999863
No 80
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.62 E-value=0.041 Score=37.26 Aligned_cols=45 Identities=24% Similarity=0.614 Sum_probs=22.0
Q ss_pred ceeeccccccCc-ceeecCCCCCccchHHHHHHHh-cCCCCccccccc
Q 044619 149 CSVCLSEFEEDE-SLRLLPKCNHAFHVACVDRWLK-SHSNCPLCRANL 194 (281)
Q Consensus 149 C~ICl~~~~~~~-~~~~lp~C~H~Fh~~Ci~~Wl~-~~~~CP~CR~~l 194 (281)
|++|.+++...+ .+.--+ |++.++..|...-+. .+..||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 678999984433 333344 889999999888775 477899999763
No 81
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.031 Score=51.47 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=38.4
Q ss_pred CcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
..|-||...|..+ .++ +|+|.||..|-..-++....|.+|-+...
T Consensus 242 f~c~icr~~f~~p---Vvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVT-KCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccc---hhh-cCCceeehhhhccccccCCcceecccccc
Confidence 4599999999986 334 59999999999999999999999976653
No 82
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.21 E-value=0.038 Score=36.53 Aligned_cols=41 Identities=24% Similarity=0.713 Sum_probs=23.0
Q ss_pred ceeeccccccCcceeecCCCCCccchHHHHHHHhcCC--CCccc
Q 044619 149 CSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS--NCPLC 190 (281)
Q Consensus 149 C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~--~CP~C 190 (281)
|.+|.+....++.-.-. .|+=.+|..|+..+++.+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 56777776666433222 4888999999999998766 79987
No 83
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.68 E-value=0.089 Score=50.16 Aligned_cols=52 Identities=27% Similarity=0.621 Sum_probs=33.1
Q ss_pred CcCCCcceeeccccccCcceee--------------cC-----CCCCccchHHHHHHHhc-------------CCCCccc
Q 044619 143 LIEGTDCSVCLSEFEEDESLRL--------------LP-----KCNHAFHVACVDRWLKS-------------HSNCPLC 190 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~~~~~~--------------lp-----~C~H~Fh~~Ci~~Wl~~-------------~~~CP~C 190 (281)
..+.+.|.-|+..-.+- ++.+ ++ .|.-.+|.+|+.+|+.+ +..||+|
T Consensus 268 ~~e~e~CigC~~~~~~v-kl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtC 346 (358)
T PF10272_consen 268 GQELEPCIGCMQAQPNV-KLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTC 346 (358)
T ss_pred ccccCCccccccCCCCc-EEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCC
Confidence 34567899999864331 1111 11 14456788999999853 3369999
Q ss_pred ccccc
Q 044619 191 RANLF 195 (281)
Q Consensus 191 R~~l~ 195 (281)
|+.+=
T Consensus 347 Ra~FC 351 (358)
T PF10272_consen 347 RAKFC 351 (358)
T ss_pred cccce
Confidence 99863
No 84
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.68 E-value=0.068 Score=37.15 Aligned_cols=43 Identities=23% Similarity=0.546 Sum_probs=31.2
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
.|..|... +.+-.++| |+|+.+..|...+ +-+-||.|-+++..
T Consensus 9 ~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 9 PCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred eEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccC
Confidence 45555443 22335777 9999999998875 66789999988854
No 85
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=0.1 Score=48.17 Aligned_cols=48 Identities=25% Similarity=0.749 Sum_probs=38.7
Q ss_pred CCcceeeccccccCc---ceeecCCCCCccchHHHHHHHhcCC-CCccccccc
Q 044619 146 GTDCSVCLSEFEEDE---SLRLLPKCNHAFHVACVDRWLKSHS-NCPLCRANL 194 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~---~~~~lp~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l 194 (281)
...|-||-++|...+ ..++|. |||.|+..|+.+-+.... .||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 357999999998764 346664 999999999998776544 699999885
No 86
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.11 E-value=0.15 Score=46.51 Aligned_cols=54 Identities=20% Similarity=0.388 Sum_probs=41.9
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccCCC
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLISA 199 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 199 (281)
....|+|...+|........+..|||+|-..+|..- .....||+|-.++.....
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDI 165 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCE
Confidence 345799999999766666556559999999999997 235679999998875433
No 87
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=91.89 E-value=0.18 Score=34.97 Aligned_cols=35 Identities=29% Similarity=0.881 Sum_probs=30.6
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHH
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDR 179 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~ 179 (281)
....|.+|-+.|..++.+.+.|.|+-.+|+.|.+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 45689999999998888888999999999999654
No 88
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.19 E-value=0.062 Score=49.46 Aligned_cols=43 Identities=26% Similarity=0.705 Sum_probs=30.6
Q ss_pred CCcceeeccccccCcceeecCCCCCc-cchHHHHHHHhcCCCCccccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHA-FHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
...|+||++.-.+ ...|+ |||. -|..|-.. -+.||+||+.+..
T Consensus 300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKR----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc---eEEee-cCcEEeehhhccc----cccCchHHHHHHH
Confidence 3469999998443 45777 9994 46677443 3389999998754
No 89
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=90.03 E-value=0.35 Score=36.90 Aligned_cols=41 Identities=24% Similarity=0.031 Sum_probs=32.1
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 044619 50 DNSSPSFSPLVIAIIGILASAFLLVSYYTILSKYCGNTNSA 90 (281)
Q Consensus 50 ~~s~~~f~~lviiii~il~~~~llv~~~~i~~~~c~~~~~~ 90 (281)
++|+..|+-++.++|++++++.++.+.|+++.|=|..-.+.
T Consensus 28 ~ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLkDlIlv~KA 68 (91)
T PF01708_consen 28 SSSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLKDLILVLKA 68 (91)
T ss_pred CCCCCcceeEeeeeehHHHHHHHHHHHHHHHHHHHhheeee
Confidence 56677889999889999999988888888888766554443
No 90
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.40 E-value=0.23 Score=51.11 Aligned_cols=23 Identities=30% Similarity=0.938 Sum_probs=21.6
Q ss_pred CCCCccchHHHHHHHhcCCCCcc
Q 044619 167 KCNHAFHVACVDRWLKSHSNCPL 189 (281)
Q Consensus 167 ~C~H~Fh~~Ci~~Wl~~~~~CP~ 189 (281)
.|+|+-|.+|++.|++....||.
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 49999999999999999999985
No 91
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=88.68 E-value=0.18 Score=51.99 Aligned_cols=48 Identities=29% Similarity=0.658 Sum_probs=36.8
Q ss_pred CcceeeccccccCcceeecCCCCCccchHHHHHHHhcCC--CCcccccccccCCC
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS--NCPLCRANLFLISA 199 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~--~CP~CR~~l~~~~~ 199 (281)
..|.||++ .+...+.+ |+|.|+..|+..-+.... .||+||..+.....
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 68999999 33455665 999999999998875433 59999998865433
No 92
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.62 E-value=0.19 Score=52.58 Aligned_cols=35 Identities=26% Similarity=0.655 Sum_probs=28.1
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHH
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWL 181 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl 181 (281)
.++.|.+|...+... .-.+-| |||.||++||.+-.
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 356899999888764 445666 99999999998765
No 93
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.57 E-value=0.14 Score=55.49 Aligned_cols=52 Identities=23% Similarity=0.590 Sum_probs=41.1
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccCCCC
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLISAS 200 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 200 (281)
...|.||++.+.....+ . .|||.++..|+..|+..+..||+|.....+-+..
T Consensus 1153 ~~~c~ic~dil~~~~~I--~-~cgh~~c~~c~~~~l~~~s~~~~~ksi~~dfg~k 1204 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGI--A-GCGHEPCCRCDELWLYASSRCPICKSIKGDFGTK 1204 (1394)
T ss_pred ccchHHHHHHHHhcCCe--e-eechhHhhhHHHHHHHHhccCcchhhhhhhhccC
Confidence 44799999999854333 2 4999999999999999999999998665544443
No 94
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.14 E-value=0.5 Score=44.67 Aligned_cols=52 Identities=29% Similarity=0.586 Sum_probs=39.0
Q ss_pred CCcCCCcceeeccccccCcceeecCCCCCccchHHHHHH--HhcCCCCcccccccccC
Q 044619 142 GLIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRW--LKSHSNCPLCRANLFLI 197 (281)
Q Consensus 142 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~W--l~~~~~CP~CR~~l~~~ 197 (281)
...+...|.||-+.+.- ..++| |+|..|--|--+. |..++.||+||.....+
T Consensus 57 tDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 57 TDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred cccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 33456789999877543 46788 9999999996543 56788999999877544
No 95
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=87.37 E-value=0.33 Score=44.72 Aligned_cols=45 Identities=22% Similarity=0.614 Sum_probs=37.9
Q ss_pred CcceeeccccccCc-ceeecCCCCCccchHHHHHHHhcCCCCccccc
Q 044619 147 TDCSVCLSEFEEDE-SLRLLPKCNHAFHVACVDRWLKSHSNCPLCRA 192 (281)
Q Consensus 147 ~~C~ICl~~~~~~~-~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~ 192 (281)
..|+||.+.+-... .+..++ |||.-|..|+..-...+-+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 45999999887765 445665 9999999999999888899999987
No 96
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=87.30 E-value=0.24 Score=46.11 Aligned_cols=46 Identities=30% Similarity=0.638 Sum_probs=31.6
Q ss_pred CcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccC
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
-.|.-|--. ...--|+.| |+|+||.+|-.. ..-+.||.|--.|..+
T Consensus 91 HfCd~Cd~P--I~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 91 HFCDRCDFP--IAIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQRI 136 (389)
T ss_pred EeecccCCc--ceeeecccc-cchhhhhhhhhc--CccccCcCcccHHHHH
Confidence 357667433 322447788 999999999654 3466899997776543
No 97
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=87.14 E-value=1.1 Score=36.46 Aligned_cols=24 Identities=13% Similarity=0.258 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 044619 58 PLVIAIIGILASAFLLVSYYTILS 81 (281)
Q Consensus 58 ~lviiii~il~~~~llv~~~~i~~ 81 (281)
.+..+++|++++++++++++.+++
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHH
Confidence 345566777777766665544444
No 98
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=84.89 E-value=2.1 Score=42.36 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=9.8
Q ss_pred chHHHHHHHhcCC
Q 044619 173 HVACVDRWLKSHS 185 (281)
Q Consensus 173 h~~Ci~~Wl~~~~ 185 (281)
+..++..||+.+.
T Consensus 291 ~kGsL~dyL~~nt 303 (534)
T KOG3653|consen 291 PKGSLCDYLKANT 303 (534)
T ss_pred cCCcHHHHHHhcc
Confidence 3578889988765
No 99
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=84.52 E-value=1.3 Score=37.39 Aligned_cols=37 Identities=22% Similarity=0.520 Sum_probs=22.7
Q ss_pred CCcceeeccccccCcceeecC---C-----CCC-ccchHHHHHHHh
Q 044619 146 GTDCSVCLSEFEEDESLRLLP---K-----CNH-AFHVACVDRWLK 182 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp---~-----C~H-~Fh~~Ci~~Wl~ 182 (281)
+..|+||||--.+...+.... + |+- .-|..|+++.-+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 468999999866542222110 1 332 358899999864
No 100
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.32 E-value=0.6 Score=42.40 Aligned_cols=53 Identities=23% Similarity=0.719 Sum_probs=37.0
Q ss_pred CCCcceeeccccccCcce-eecCCCC-----CccchHHHHHHHhcCC--------CCcccccccccCC
Q 044619 145 EGTDCSVCLSEFEEDESL-RLLPKCN-----HAFHVACVDRWLKSHS--------NCPLCRANLFLIS 198 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~-~~lp~C~-----H~Fh~~Ci~~Wl~~~~--------~CP~CR~~l~~~~ 198 (281)
.+..|=||+..=++.-.. -+-| |. |-.|..|+..|+..+. +||.|+......-
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~ 85 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVF 85 (293)
T ss_pred cceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeec
Confidence 355799999875544322 3455 64 8999999999994322 5999998765443
No 101
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=83.78 E-value=0.53 Score=31.75 Aligned_cols=30 Identities=30% Similarity=0.735 Sum_probs=22.4
Q ss_pred CCC-CccchHHHHHHHhcCCCCccccccccc
Q 044619 167 KCN-HAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 167 ~C~-H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
+|+ |..+..|+..-|.+...||+|..++..
T Consensus 17 ~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 17 KCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp E-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred eecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 376 999999999999999999999998864
No 102
>PF15102 TMEM154: TMEM154 protein family
Probab=83.60 E-value=0.47 Score=39.56 Aligned_cols=9 Identities=33% Similarity=0.970 Sum_probs=5.0
Q ss_pred HHHHHHHhc
Q 044619 175 ACVDRWLKS 183 (281)
Q Consensus 175 ~Ci~~Wl~~ 183 (281)
.=|++|+.+
T Consensus 128 eeldkwm~s 136 (146)
T PF15102_consen 128 EELDKWMNS 136 (146)
T ss_pred HHHHhHHHh
Confidence 346677643
No 103
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.12 E-value=0.74 Score=42.59 Aligned_cols=29 Identities=24% Similarity=0.769 Sum_probs=22.6
Q ss_pred CCCccchHHHHHHHh-------------cCCCCccccccccc
Q 044619 168 CNHAFHVACVDRWLK-------------SHSNCPLCRANLFL 196 (281)
Q Consensus 168 C~H~Fh~~Ci~~Wl~-------------~~~~CP~CR~~l~~ 196 (281)
|.-.+|.+|+.+|+. .+-+||+||+.+-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 567889999999874 34479999998743
No 104
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=81.63 E-value=1.2 Score=42.11 Aligned_cols=53 Identities=19% Similarity=0.437 Sum_probs=38.0
Q ss_pred CCCcceeeccccccCcce-eecCCCCCccchHHHHHHHh-cCCCCcccccccccCC
Q 044619 145 EGTDCSVCLSEFEEDESL-RLLPKCNHAFHVACVDRWLK-SHSNCPLCRANLFLIS 198 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~-~~lp~C~H~Fh~~Ci~~Wl~-~~~~CP~CR~~l~~~~ 198 (281)
+.+.|+.|++.+...++- .-.| ||.-.|.-|...--+ -+..||-||+......
T Consensus 13 eed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 456699999999887654 3455 998888888654332 3557999998775543
No 105
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.28 E-value=4.6 Score=38.89 Aligned_cols=45 Identities=24% Similarity=0.511 Sum_probs=36.8
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCC---CCccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS---NCPLC 190 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~---~CP~C 190 (281)
....|+|=.+.-.+......|. |||+...+-|.+--++.. .||.|
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence 3567999887777777777887 999999999999876655 59999
No 106
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.18 E-value=0.89 Score=45.79 Aligned_cols=45 Identities=33% Similarity=0.881 Sum_probs=37.5
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccC
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
..+.|.+|+.++ ..+..+ |. |..|+.+|+..+..||+|+..+...
T Consensus 478 ~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKED 522 (543)
T ss_pred ccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcc
Confidence 357899999998 345565 88 9999999999999999999888544
No 107
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.16 E-value=0.77 Score=44.32 Aligned_cols=39 Identities=28% Similarity=0.711 Sum_probs=28.7
Q ss_pred CCCcceeeccccccC-cceeecCCCCCccchHHHHHHHhcC
Q 044619 145 EGTDCSVCLSEFEED-ESLRLLPKCNHAFHVACVDRWLKSH 184 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~-~~~~~lp~C~H~Fh~~Ci~~Wl~~~ 184 (281)
...+|.||+.+.... +...++ +|+|.|+.+|+.+.+..+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhhh
Confidence 356899999444443 444444 599999999999988644
No 108
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=80.08 E-value=4.4 Score=26.05 Aligned_cols=25 Identities=8% Similarity=0.268 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044619 62 AIIGILASAFLLVSYYTILSKYCGNT 87 (281)
Q Consensus 62 iii~il~~~~llv~~~~i~~~~c~~~ 87 (281)
++.++++++.++++..+++ -+|.++
T Consensus 8 IIv~V~vg~~iiii~~~~Y-aCcykk 32 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYY-ACCYKK 32 (38)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHcc
Confidence 3344444333333333333 344444
No 109
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.72 E-value=0.94 Score=40.04 Aligned_cols=40 Identities=30% Similarity=0.747 Sum_probs=29.3
Q ss_pred ceeeccccccCcceeecCCCCC-ccchHHHHHHHhcCCCCccccccccc
Q 044619 149 CSVCLSEFEEDESLRLLPKCNH-AFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 149 C~ICl~~~~~~~~~~~lp~C~H-~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
|-.|.+. +..|.++| |.| .+|..|=.. -..||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhc
Confidence 7777654 55788899 997 678888543 4569999877643
No 110
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=79.55 E-value=1.3 Score=40.78 Aligned_cols=51 Identities=27% Similarity=0.812 Sum_probs=37.4
Q ss_pred CCcceeeccccccCcc-eeecCCCC-----CccchHHHHHHHh--cCCCCcccccccccC
Q 044619 146 GTDCSVCLSEFEEDES-LRLLPKCN-----HAFHVACVDRWLK--SHSNCPLCRANLFLI 197 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~-~~~lp~C~-----H~Fh~~Ci~~Wl~--~~~~CP~CR~~l~~~ 197 (281)
...|=||.++...... ..+.| |. +..|..|+..|+. .+..|-.|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4689999997765331 23455 65 6789999999997 566799998776544
No 111
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=78.37 E-value=1.5 Score=40.91 Aligned_cols=47 Identities=23% Similarity=0.498 Sum_probs=35.7
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
.+..+|+||.+.+..+ +.+.. =||+-|..|=. +..+.||.||.++..
T Consensus 46 ~~lleCPvC~~~l~~P--i~QC~-nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP--IFQCD-NGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCccc--ceecC-CCcEehhhhhh---hhcccCCcccccccc
Confidence 3567999999999875 33322 36999999965 457789999999974
No 112
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=77.07 E-value=2 Score=35.31 Aligned_cols=53 Identities=23% Similarity=0.447 Sum_probs=37.7
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHh---cCCCCcccccccccCC
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLK---SHSNCPLCRANLFLIS 198 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~---~~~~CP~CR~~l~~~~ 198 (281)
.-+|.||.|.-.+..-+.--.-||...|.-|...-++ .+..||.|+.++....
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4689999998666433322225999999999765544 4668999999986543
No 113
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=76.15 E-value=1.7 Score=37.17 Aligned_cols=6 Identities=17% Similarity=0.573 Sum_probs=3.0
Q ss_pred CCCCCC
Q 044619 16 NSKDCS 21 (281)
Q Consensus 16 ~~~~~~ 21 (281)
...+|.
T Consensus 17 ~~F~C~ 22 (179)
T PF13908_consen 17 PGFNCP 22 (179)
T ss_pred cCCcCC
Confidence 344565
No 114
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=75.87 E-value=3.3 Score=38.67 Aligned_cols=27 Identities=33% Similarity=0.627 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044619 58 PLVIAIIGILASAFLLVSYYTILSKYCG 85 (281)
Q Consensus 58 ~lviiii~il~~~~llv~~~~i~~~~c~ 85 (281)
+++..+++|++.+++++++|+++ ||++
T Consensus 257 ~I~aSiiaIliIVLIMvIIYLIL-RYRR 283 (299)
T PF02009_consen 257 AIIASIIAILIIVLIMVIIYLIL-RYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 44555566666666666666665 4444
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.25 E-value=3 Score=43.22 Aligned_cols=41 Identities=22% Similarity=0.423 Sum_probs=31.8
Q ss_pred CcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcc
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPL 189 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~ 189 (281)
..|.+|-..+.. .....+.|+|.=|.+|+.+|+..++-||.
T Consensus 780 ~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 369999766543 23344569999999999999999998876
No 116
>PF15471 TMEM171: Transmembrane protein family 171
Probab=73.80 E-value=2.1 Score=39.25 Aligned_cols=13 Identities=62% Similarity=1.349 Sum_probs=9.8
Q ss_pred ceeeecCCCCCCc
Q 044619 32 WCYIIFPPPPPSF 44 (281)
Q Consensus 32 ~~~~~~ppppp~~ 44 (281)
.--||||||||++
T Consensus 214 DaViiFPPPPPPY 226 (319)
T PF15471_consen 214 DAVIIFPPPPPPY 226 (319)
T ss_pred CEEEEcCCccCCC
Confidence 3457899999874
No 117
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=72.78 E-value=8.3 Score=40.44 Aligned_cols=31 Identities=23% Similarity=0.474 Sum_probs=17.3
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhcCCCcccc
Q 044619 62 AIIGILA-SAFLLVSYYTILSKYCGNTNSASR 92 (281)
Q Consensus 62 iii~il~-~~~llv~~~~i~~~~c~~~~~~~r 92 (281)
++++||. .+++++++++++..||+++....|
T Consensus 274 fLl~ILG~~~livl~lL~vLl~yCrrkc~~~r 305 (807)
T PF10577_consen 274 FLLAILGGTALIVLILLCVLLCYCRRKCLKPR 305 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcc
Confidence 3444444 444455555666677887665543
No 118
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=72.16 E-value=5.2 Score=35.81 Aligned_cols=29 Identities=45% Similarity=0.678 Sum_probs=15.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044619 55 SFSPLVIAIIGILASAFLLVSYYTILSKYCGNT 87 (281)
Q Consensus 55 ~f~~lviiii~il~~~~llv~~~~i~~~~c~~~ 87 (281)
.+.+++|++|+|.+++|+|+++| |.|++.
T Consensus 189 vilpvvIaliVitl~vf~LvgLy----r~C~k~ 217 (259)
T PF07010_consen 189 VILPVVIALIVITLSVFTLVGLY----RMCWKT 217 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHhhcC
Confidence 44555555555555555555544 445543
No 119
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=71.63 E-value=5.3 Score=38.09 Aligned_cols=29 Identities=34% Similarity=0.694 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044619 57 SPLVIAIIGILASAFLLVSYYTILSKYCGN 86 (281)
Q Consensus 57 ~~lviiii~il~~~~llv~~~~i~~~~c~~ 86 (281)
.++++-+|+|++.+++++++|+++ ||++.
T Consensus 310 t~IiaSiIAIvvIVLIMvIIYLIL-RYRRK 338 (353)
T TIGR01477 310 TPIIASIIAILIIVLIMVIIYLIL-RYRRK 338 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhhhc
Confidence 455666677777777777777776 44443
No 120
>PTZ00046 rifin; Provisional
Probab=70.04 E-value=6 Score=37.80 Aligned_cols=29 Identities=24% Similarity=0.585 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044619 57 SPLVIAIIGILASAFLLVSYYTILSKYCGN 86 (281)
Q Consensus 57 ~~lviiii~il~~~~llv~~~~i~~~~c~~ 86 (281)
.+++.-+++|++.+++++++|+++ ||++.
T Consensus 315 taIiaSiiAIvVIVLIMvIIYLIL-RYRRK 343 (358)
T PTZ00046 315 TAIIASIVAIVVIVLIMVIIYLIL-RYRRK 343 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhhhc
Confidence 355566677777777777777776 44443
No 121
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=69.04 E-value=3.5 Score=36.14 Aligned_cols=40 Identities=35% Similarity=0.901 Sum_probs=29.4
Q ss_pred CCcceeeccc-----cccCcceeecCCCCCccchHHHHHHHhcCCCCcccc
Q 044619 146 GTDCSVCLSE-----FEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCR 191 (281)
Q Consensus 146 ~~~C~ICl~~-----~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR 191 (281)
+..|-+|-+. |+. +.+...++|+-+||..|.. +..||-|-
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 5689999753 333 2555666799999999976 26799993
No 122
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=68.57 E-value=6 Score=41.56 Aligned_cols=60 Identities=22% Similarity=0.600 Sum_probs=42.4
Q ss_pred CCCcceeeccccccCcceeecCCCC-----CccchHHHHHHHhcC--CCCcccccccccCCCCCCCCCC
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCN-----HAFHVACVDRWLKSH--SNCPLCRANLFLISASPQLPPI 206 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~-----H~Fh~~Ci~~Wl~~~--~~CP~CR~~l~~~~~~~~~~~~ 206 (281)
+...|-||..+=..++.+ .-| |+ ...|.+|+.+|+.-. ..|-+|+.++.....-.+..+.
T Consensus 11 d~~~CRICr~e~~~d~pL-fhP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP~ 77 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPL-FHP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMPQ 77 (1175)
T ss_pred cchhceeecCCCCCCCcC-ccc-ccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCCc
Confidence 346899999886666555 344 54 468999999999644 4699999998766555444443
No 123
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=64.48 E-value=2.4 Score=43.04 Aligned_cols=41 Identities=34% Similarity=0.798 Sum_probs=26.4
Q ss_pred CCcceeecc-----ccccCcceeecCCCCCccchHHHHHHHhcCCCCccc
Q 044619 146 GTDCSVCLS-----EFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLC 190 (281)
Q Consensus 146 ~~~C~ICl~-----~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~C 190 (281)
+..|.+|.. .|+.....+.. .|+++||..|+.. .+..||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~-~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCS-TCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccccccceeHH-HHHHHHHHHHHhc---cCCCCCch
Confidence 457888832 23322233444 4999999999665 45559999
No 124
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=64.30 E-value=3.7 Score=40.15 Aligned_cols=32 Identities=38% Similarity=0.756 Sum_probs=26.8
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHH
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRW 180 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~W 180 (281)
+...|+||-.-|.++ ++|| |+|..|.-|-..-
T Consensus 3 eelkc~vc~~f~~ep---iil~-c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP---IILP-CSHNLCQACARNI 34 (699)
T ss_pred ccccCceehhhccCc---eEee-cccHHHHHHHHhh
Confidence 467899999999876 7888 9999999997643
No 125
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.59 E-value=2.5 Score=43.12 Aligned_cols=45 Identities=22% Similarity=0.466 Sum_probs=33.9
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRA 192 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~ 192 (281)
+...|.||+..|......-+...|||..|..|+..- -+.+|| |.+
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~ 54 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR 54 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence 356899999999876644444469999999999874 466788 543
No 126
>PLN02189 cellulose synthase
Probab=62.71 E-value=11 Score=40.85 Aligned_cols=54 Identities=19% Similarity=0.495 Sum_probs=37.8
Q ss_pred CCCcceeecccccc---CcceeecCCCCCccchHHHHH-HHhcCCCCcccccccccCC
Q 044619 145 EGTDCSVCLSEFEE---DESLRLLPKCNHAFHVACVDR-WLKSHSNCPLCRANLFLIS 198 (281)
Q Consensus 145 ~~~~C~ICl~~~~~---~~~~~~lp~C~H~Fh~~Ci~~-Wl~~~~~CP~CR~~l~~~~ 198 (281)
....|.||-++... ++.-.....|+--.|..|.+- .-..++.||.|+.......
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 34589999999763 333333445888899999953 3345678999998886443
No 127
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=62.50 E-value=4.9 Score=42.01 Aligned_cols=55 Identities=15% Similarity=0.185 Sum_probs=37.5
Q ss_pred CCcceeeccccccCc---ceeecCCCCCccchHHHHHHHhc------CCCCcccccccccCCCC
Q 044619 146 GTDCSVCLSEFEEDE---SLRLLPKCNHAFHVACVDRWLKS------HSNCPLCRANLFLISAS 200 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~---~~~~lp~C~H~Fh~~Ci~~Wl~~------~~~CP~CR~~l~~~~~~ 200 (281)
...|.+|.-++..++ .+-.+..|+|.||..||..|+.. +-.|++|...|..-...
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~ 159 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC 159 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh
Confidence 456777777777622 22222359999999999999843 33689998888654433
No 128
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=62.43 E-value=3.8 Score=36.29 Aligned_cols=45 Identities=24% Similarity=0.686 Sum_probs=35.0
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRAN 193 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~ 193 (281)
...|.+|..-.-.+ ++ ...|+--+|..|+.+.+.+...||.|---
T Consensus 181 lk~Cn~Ch~LvIqg--~r-Cg~c~i~~h~~c~qty~q~~~~cphc~d~ 225 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IR-CGSCNIQYHRGCIQTYLQRRDICPHCGDL 225 (235)
T ss_pred HHHHhHhHHHhhee--ec-cCcccchhhhHHHHHHhcccCcCCchhcc
Confidence 45799998775554 22 23588899999999999999999999433
No 129
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=62.00 E-value=2.3 Score=43.79 Aligned_cols=48 Identities=31% Similarity=0.800 Sum_probs=37.3
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcC---CCCcccccccccC
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSH---SNCPLCRANLFLI 197 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~---~~CP~CR~~l~~~ 197 (281)
..+|.||+..+..+ ..+ +|.|.|+..|+..-+... ..||+|+..+...
T Consensus 21 ~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 56999999998886 233 699999999988766444 4699999777543
No 130
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=61.63 E-value=12 Score=31.28 Aligned_cols=9 Identities=56% Similarity=1.121 Sum_probs=4.9
Q ss_pred ecCCCCCCc
Q 044619 36 IFPPPPPSF 44 (281)
Q Consensus 36 ~~ppppp~~ 44 (281)
++|-+||.|
T Consensus 18 ls~~~~psf 26 (189)
T PF05568_consen 18 LSPVTPPSF 26 (189)
T ss_pred cCCCCCccH
Confidence 355566654
No 131
>PF15050 SCIMP: SCIMP protein
Probab=61.09 E-value=21 Score=28.91 Aligned_cols=9 Identities=11% Similarity=0.190 Sum_probs=3.8
Q ss_pred CchhHHHHH
Q 044619 55 SFSPLVIAI 63 (281)
Q Consensus 55 ~f~~lviii 63 (281)
+|..++.+.
T Consensus 7 nFWiiLAVa 15 (133)
T PF15050_consen 7 NFWIILAVA 15 (133)
T ss_pred chHHHHHHH
Confidence 344444433
No 132
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=60.25 E-value=9.3 Score=28.52 Aligned_cols=52 Identities=17% Similarity=0.428 Sum_probs=20.8
Q ss_pred CCCcceeecccccc---CcceeecCCCCCccchHHHHHHH-hcCCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEE---DESLRLLPKCNHAFHVACVDRWL-KSHSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~---~~~~~~lp~C~H~Fh~~Ci~~Wl-~~~~~CP~CR~~l~~ 196 (281)
....|-||-++... ++.....-.|+--.++.|++-=. ..++.||.|+.+...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 45689999988754 32222222477788999987444 457789999977754
No 133
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=59.82 E-value=22 Score=22.82 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044619 58 PLVIAIIGILASAFLLVSYYTILSKYCGN 86 (281)
Q Consensus 58 ~lviiii~il~~~~llv~~~~i~~~~c~~ 86 (281)
.++..+++.++.+++.+++|.+..|..++
T Consensus 7 aIIv~V~vg~~iiii~~~~YaCcykk~~~ 35 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFYYACCYKKHRR 35 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 34444444555555566666665555543
No 134
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.11 E-value=5.1 Score=28.29 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044619 57 SPLVIAIIGILASAFLLVSYYTILSK 82 (281)
Q Consensus 57 ~~lviiii~il~~~~llv~~~~i~~~ 82 (281)
.|+.+++++.++..+++..++.....
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~ 43 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSR 43 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555443
No 136
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.99 E-value=3.4 Score=43.06 Aligned_cols=44 Identities=20% Similarity=0.482 Sum_probs=32.1
Q ss_pred CCCcceeeccccccC----cceeecCCCCCccchHHHHHHHhcCCCCccc
Q 044619 145 EGTDCSVCLSEFEED----ESLRLLPKCNHAFHVACVDRWLKSHSNCPLC 190 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~C 190 (281)
....|.-|.+..-.. ..+.++- |+|+||..|+..-..+++ |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 345799999876532 3566775 999999999988776665 5444
No 137
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=58.84 E-value=8.6 Score=35.64 Aligned_cols=52 Identities=25% Similarity=0.509 Sum_probs=35.9
Q ss_pred cceeeccccc-cCc-ceeecCCCCCccchHHHHHHHhcCC-CCcccccccccCCCC
Q 044619 148 DCSVCLSEFE-EDE-SLRLLPKCNHAFHVACVDRWLKSHS-NCPLCRANLFLISAS 200 (281)
Q Consensus 148 ~C~ICl~~~~-~~~-~~~~lp~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l~~~~~~ 200 (281)
.|++|...-- .++ .+.+-+ |+|..|.+|++.-+..+. .||-|-..+...+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~-C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINE-CGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred CCcccccceecCccceeeecc-ccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 4777765432 233 334445 999999999999886554 799998777654443
No 138
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=58.60 E-value=4.1 Score=36.83 Aligned_cols=50 Identities=34% Similarity=0.686 Sum_probs=37.3
Q ss_pred CCCcceeeccccc--cCcceeecCCCCCccchHHHHHHHhcCC-CCc--cccccc
Q 044619 145 EGTDCSVCLSEFE--EDESLRLLPKCNHAFHVACVDRWLKSHS-NCP--LCRANL 194 (281)
Q Consensus 145 ~~~~C~ICl~~~~--~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~-~CP--~CR~~l 194 (281)
.+..|+||..+-- .+.++.+-|.|-|..|.+|+++-+.... .|| -|-+-|
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 3458999987643 3335556677999999999999987655 699 785554
No 139
>PLN02436 cellulose synthase A
Probab=58.30 E-value=14 Score=40.07 Aligned_cols=53 Identities=23% Similarity=0.576 Sum_probs=36.7
Q ss_pred CCcceeeccccc---cCcceeecCCCCCccchHHHHH-HHhcCCCCcccccccccCC
Q 044619 146 GTDCSVCLSEFE---EDESLRLLPKCNHAFHVACVDR-WLKSHSNCPLCRANLFLIS 198 (281)
Q Consensus 146 ~~~C~ICl~~~~---~~~~~~~lp~C~H~Fh~~Ci~~-Wl~~~~~CP~CR~~l~~~~ 198 (281)
...|-||-++.. +++.-.....|+--.|..|.+- .-..++.||.|+.......
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 458999999964 3443333335777799999953 2245668999998886443
No 140
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=56.58 E-value=6.5 Score=25.65 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=3.2
Q ss_pred HHHHHhcC
Q 044619 79 ILSKYCGN 86 (281)
Q Consensus 79 i~~~~c~~ 86 (281)
++.|+..|
T Consensus 29 iYRKw~aR 36 (43)
T PF08114_consen 29 IYRKWQAR 36 (43)
T ss_pred HHHHHHHH
Confidence 33344433
No 141
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=55.41 E-value=7.7 Score=30.24 Aligned_cols=17 Identities=35% Similarity=0.636 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044619 63 IIGILASAFLLVSYYTI 79 (281)
Q Consensus 63 ii~il~~~~llv~~~~i 79 (281)
++++++.+.+++++|++
T Consensus 65 li~lls~v~IlVily~I 81 (101)
T PF06024_consen 65 LISLLSFVCILVILYAI 81 (101)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 33333333333333333
No 142
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=55.06 E-value=17 Score=33.75 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=16.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044619 55 SFSPLVIAIIGILASAFLLVSYYTILS 81 (281)
Q Consensus 55 ~f~~lviiii~il~~~~llv~~~~i~~ 81 (281)
.|.|.-|+.+++|+.+++|+++|+.+.
T Consensus 257 aF~Pcgiaalvllil~vvliiLYiWly 283 (295)
T TIGR01478 257 TFLPYGIAALVLIILTVVLIILYIWLY 283 (295)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 366766666666666666655555543
No 143
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=54.71 E-value=6.9 Score=22.93 Aligned_cols=23 Identities=35% Similarity=0.779 Sum_probs=11.6
Q ss_pred cceeeccccccCcceeecCCCCCcc
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAF 172 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~F 172 (281)
.|+-|...... ..+.-|.|||.|
T Consensus 2 ~CP~C~~~V~~--~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPE--SAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchh--hcCcCCCCCCCC
Confidence 35555555432 233445566666
No 144
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=53.82 E-value=22 Score=26.64 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 044619 63 IIGILASAFLLVSYYTILSKYCGNTNS 89 (281)
Q Consensus 63 ii~il~~~~llv~~~~i~~~~c~~~~~ 89 (281)
+.|++++=+++..++...+.+|.+.++
T Consensus 36 LaGiV~~D~vlTLLIv~~vy~car~r~ 62 (79)
T PF07213_consen 36 LAGIVAADAVLTLLIVLVVYYCARPRR 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 455666555666666666667777543
No 145
>PTZ00370 STEVOR; Provisional
Probab=53.66 E-value=16 Score=33.83 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=16.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044619 55 SFSPLVIAIIGILASAFLLVSYYTILS 81 (281)
Q Consensus 55 ~f~~lviiii~il~~~~llv~~~~i~~ 81 (281)
.|.|.-|+.+++|+.+++|+++|+.+.
T Consensus 253 aF~Pygiaalvllil~vvliilYiwly 279 (296)
T PTZ00370 253 AFYPYGIAALVLLILAVVLIILYIWLY 279 (296)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666666665555555543
No 146
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.66 E-value=7.8 Score=38.07 Aligned_cols=36 Identities=22% Similarity=0.679 Sum_probs=29.0
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS 183 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~ 183 (281)
....|-||.+.+.. .+..+. |+|.|+..|....+..
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 35689999999876 344554 9999999999999854
No 147
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=52.22 E-value=7.7 Score=35.58 Aligned_cols=48 Identities=29% Similarity=0.647 Sum_probs=35.2
Q ss_pred CcceeeccccccCcceee---cCCCCCccchHHHHHHHhc---------CCCCccccccc
Q 044619 147 TDCSVCLSEFEEDESLRL---LPKCNHAFHVACVDRWLKS---------HSNCPLCRANL 194 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~---lp~C~H~Fh~~Ci~~Wl~~---------~~~CP~CR~~l 194 (281)
..|-+|..++.+.+..+. -+.|+-.+|..|+..-+.. ...||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 589999999955444433 2468899999999985432 33699998855
No 148
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=51.97 E-value=27 Score=29.76 Aligned_cols=18 Identities=17% Similarity=0.264 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044619 63 IIGILASAFLLVSYYTIL 80 (281)
Q Consensus 63 ii~il~~~~llv~~~~i~ 80 (281)
.+.+++++..++++|+++
T Consensus 97 ~~~Vl~g~s~l~i~yfvi 114 (163)
T PF06679_consen 97 ALYVLVGLSALAILYFVI 114 (163)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 149
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=51.70 E-value=6.6 Score=25.98 Aligned_cols=43 Identities=30% Similarity=0.628 Sum_probs=28.7
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHh------cCCCCcccc
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLK------SHSNCPLCR 191 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~------~~~~CP~CR 191 (281)
.|.||...-..+..+.-- .|+-.||..|+..=.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~-~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCD-SCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBS-TTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcC-CCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 378888855555444444 5999999999865432 234688875
No 150
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=51.25 E-value=29 Score=28.13 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=12.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044619 52 SSPSFSPLVIAIIGILASAFLLVSYYTILS 81 (281)
Q Consensus 52 s~~~f~~lviiii~il~~~~llv~~~~i~~ 81 (281)
+.+....+++.+++-++++++|++|++...
T Consensus 62 s~~~i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp S-TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333333444444444433
No 151
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=51.11 E-value=25 Score=31.60 Aligned_cols=20 Identities=5% Similarity=-0.152 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhcCCCc
Q 044619 70 AFLLVSYYTILSKYCGNTNS 89 (281)
Q Consensus 70 ~~llv~~~~i~~~~c~~~~~ 89 (281)
++++.+..+.++-+++..+.
T Consensus 197 liVitl~vf~LvgLyr~C~k 216 (259)
T PF07010_consen 197 LIVITLSVFTLVGLYRMCWK 216 (259)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 33344444445566665543
No 152
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=50.99 E-value=39 Score=31.88 Aligned_cols=45 Identities=18% Similarity=0.395 Sum_probs=32.8
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCC---CCccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS---NCPLC 190 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~---~CP~C 190 (281)
....|++=-+.-.+......+. |||+.-..-++..-++.. .||.|
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred ceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 4567888666655555556675 999999999988655443 49999
No 153
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.99 E-value=19 Score=28.77 Aligned_cols=46 Identities=24% Similarity=0.405 Sum_probs=33.6
Q ss_pred CCcceeeccccccCc----------ceeecCCCCCccchHHHHHHHhcCCCCcccc
Q 044619 146 GTDCSVCLSEFEEDE----------SLRLLPKCNHAFHVACVDRWLKSHSNCPLCR 191 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~----------~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR 191 (281)
...|.-|+..|.... ..-.-++|++.|+.+|=.=+-..-.+||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 356999999987531 1233567999999999666666666899985
No 154
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=49.99 E-value=17 Score=32.39 Aligned_cols=32 Identities=19% Similarity=0.541 Sum_probs=17.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044619 55 SFSPLVIAIIGILASAFLLVSYYTILSKYCGNT 87 (281)
Q Consensus 55 ~f~~lviiii~il~~~~llv~~~~i~~~~c~~~ 87 (281)
....++|++|+-.++++|++++..+ +|||+..
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~-vR~CRq~ 66 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVL-VRYCRQS 66 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHH-HHHHhhc
Confidence 3445555555555555555544444 4767643
No 155
>PTZ00087 thrombosponding-related protein; Provisional
Probab=49.90 E-value=22 Score=32.83 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=10.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 044619 55 SFSPLVIAIIGILASAFLLVSYYTI 79 (281)
Q Consensus 55 ~f~~lviiii~il~~~~llv~~~~i 79 (281)
.|..++|++-++++..++.++|-++
T Consensus 295 t~~i~~i~~piv~vi~v~~ily~if 319 (340)
T PTZ00087 295 TFKILIILLPIVLIICVMGILYHIF 319 (340)
T ss_pred cceEeeeehhHHHHHHHHHHHHHHh
Confidence 4555555444444433333333333
No 156
>PLN02400 cellulose synthase
Probab=49.82 E-value=19 Score=39.25 Aligned_cols=53 Identities=15% Similarity=0.428 Sum_probs=36.5
Q ss_pred CCCcceeecccccc---CcceeecCCCCCccchHHHH-HHHhcCCCCcccccccccC
Q 044619 145 EGTDCSVCLSEFEE---DESLRLLPKCNHAFHVACVD-RWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 145 ~~~~C~ICl~~~~~---~~~~~~lp~C~H~Fh~~Ci~-~Wl~~~~~CP~CR~~l~~~ 197 (281)
....|-||-++... ++.-...-.|+---|+.|.+ +.-..++.||.|+.....-
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccc
Confidence 35689999999764 33222233477779999985 3345577899999888644
No 157
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=49.29 E-value=35 Score=26.63 Aligned_cols=29 Identities=7% Similarity=0.257 Sum_probs=20.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044619 55 SFSPLVIAIIGILASAFLLVSYYTILSKY 83 (281)
Q Consensus 55 ~f~~lviiii~il~~~~llv~~~~i~~~~ 83 (281)
.+.+++|.+.++++++=|++.+++++.++
T Consensus 17 PWeIfLItLasVvvavGl~aGLfFcvR~~ 45 (106)
T PF14654_consen 17 PWEIFLITLASVVVAVGLFAGLFFCVRNS 45 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45667777777777777777777766443
No 158
>PHA02650 hypothetical protein; Provisional
Probab=49.21 E-value=29 Score=25.94 Aligned_cols=9 Identities=11% Similarity=0.084 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 044619 74 VSYYTILSK 82 (281)
Q Consensus 74 v~~~~i~~~ 82 (281)
+++.+++.|
T Consensus 63 ~l~~flYLK 71 (81)
T PHA02650 63 ALFSFFVFK 71 (81)
T ss_pred HHHHHHHHH
Confidence 333333333
No 159
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=49.05 E-value=24 Score=30.70 Aligned_cols=6 Identities=50% Similarity=1.154 Sum_probs=2.9
Q ss_pred HHHHhc
Q 044619 80 LSKYCG 85 (281)
Q Consensus 80 ~~~~c~ 85 (281)
++|||+
T Consensus 180 ~~KF~k 185 (186)
T PF05283_consen 180 LYKFCK 185 (186)
T ss_pred Hhhhcc
Confidence 345554
No 160
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=48.82 E-value=11 Score=27.26 Aligned_cols=11 Identities=27% Similarity=1.114 Sum_probs=8.2
Q ss_pred cchHHHHHHHh
Q 044619 172 FHVACVDRWLK 182 (281)
Q Consensus 172 Fh~~Ci~~Wl~ 182 (281)
||+.|+.+|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999974
No 161
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=48.79 E-value=26 Score=38.16 Aligned_cols=53 Identities=17% Similarity=0.458 Sum_probs=36.8
Q ss_pred CCCcceeecccccc---CcceeecCCCCCccchHHHH-HHHhcCCCCcccccccccC
Q 044619 145 EGTDCSVCLSEFEE---DESLRLLPKCNHAFHVACVD-RWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 145 ~~~~C~ICl~~~~~---~~~~~~lp~C~H~Fh~~Ci~-~Wl~~~~~CP~CR~~l~~~ 197 (281)
....|-||-++... ++.-...-.|+--.|+.|.+ +.-..++.||.|+.....-
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~ 72 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRH 72 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhh
Confidence 34589999998754 33323333477779999995 3445677899999888643
No 162
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=48.77 E-value=24 Score=26.59 Aligned_cols=18 Identities=22% Similarity=0.558 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044619 63 IIGILASAFLLVSYYTIL 80 (281)
Q Consensus 63 ii~il~~~~llv~~~~i~ 80 (281)
++++++++++.+.+++++
T Consensus 9 iialiv~~iiaIvvW~iv 26 (81)
T PF00558_consen 9 IIALIVALIIAIVVWTIV 26 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333344444443
No 163
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=48.20 E-value=21 Score=27.06 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=25.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 044619 55 SFSPLVIAIIGILASAFLLVSYYTILSKYCGNTNSA 90 (281)
Q Consensus 55 ~f~~lviiii~il~~~~llv~~~~i~~~~c~~~~~~ 90 (281)
.+.++++.||+..+++++|+.+...++-||.+.+..
T Consensus 11 plp~~~yyiiA~gga~llL~~v~l~vvL~C~r~~~a 46 (87)
T PF11980_consen 11 PLPPYWYYIIAMGGALLLLVAVCLGVVLYCHRFHWA 46 (87)
T ss_pred CCCceeeHHHhhccHHHHHHHHHHHHHHhhhhhccc
Confidence 366777778877777777777776666777776554
No 164
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=47.99 E-value=29 Score=37.16 Aligned_cols=10 Identities=30% Similarity=0.929 Sum_probs=6.2
Q ss_pred ccccCCCcee
Q 044619 25 CSLYCPQWCY 34 (281)
Q Consensus 25 ~~~~~~~~~~ 34 (281)
|++.|-+-|-
T Consensus 596 Ch~nCth~c~ 605 (1177)
T KOG1025|consen 596 CHPNCTHGCL 605 (1177)
T ss_pred CCCccccccc
Confidence 6666666665
No 165
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.17 E-value=17 Score=33.12 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=30.8
Q ss_pred CcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCC
Q 044619 143 LIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS 185 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~ 185 (281)
...-+.|+.||..+.++ .+.| =||+|+..||.+.+..++
T Consensus 40 iK~FdcCsLtLqPc~dP---vit~-~GylfdrEaILe~ilaqK 78 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDP---VITP-DGYLFDREAILEYILAQK 78 (303)
T ss_pred cCCcceeeeecccccCC---ccCC-CCeeeeHHHHHHHHHHHH
Confidence 34567899999999886 4555 799999999999875443
No 166
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.37 E-value=23 Score=26.87 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=22.6
Q ss_pred cCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044619 47 FLHDNSSPSFSPLVIAIIGILASAFLLVSYYTILSKYCG 85 (281)
Q Consensus 47 ~~~~~s~~~f~~lviiii~il~~~~llv~~~~i~~~~c~ 85 (281)
|.|+...-...|++++++++.+. +.++.+.++-|+.+
T Consensus 49 YTDda~GlKV~PvvVLvmSvgFI--asV~~LHi~gK~~~ 85 (88)
T KOG3457|consen 49 YTDDAPGLKVDPVVVLVMSVGFI--ASVFALHIWGKLTR 85 (88)
T ss_pred eecCCCCceeCCeeehhhhHHHH--HHHHHHHHHHHHhh
Confidence 46677777778887777665543 33444566655543
No 167
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=45.25 E-value=22 Score=33.95 Aligned_cols=27 Identities=41% Similarity=0.426 Sum_probs=20.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044619 55 SFSPLVIAIIGILASAFLLVSYYTILS 81 (281)
Q Consensus 55 ~f~~lviiii~il~~~~llv~~~~i~~ 81 (281)
.|+++||+++++.+++-++++++.-+.
T Consensus 314 ~~S~lvi~i~~vgLG~P~l~li~Ggl~ 340 (350)
T PF15065_consen 314 SFSPLVIMIMAVGLGVPLLLLILGGLY 340 (350)
T ss_pred chhHHHHHHHHHHhhHHHHHHHHhhhe
Confidence 489999999888888777766665554
No 168
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=44.97 E-value=38 Score=28.40 Aligned_cols=28 Identities=11% Similarity=0.297 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044619 60 VIAIIGILASAFLLVSYYTILSKYCGNT 87 (281)
Q Consensus 60 viiii~il~~~~llv~~~~i~~~~c~~~ 87 (281)
+|+.+++.+++.+++++++++-.+++|+
T Consensus 121 lilaisvtvv~~iliii~CLiei~shr~ 148 (154)
T PF14914_consen 121 LILAISVTVVVMILIIIFCLIEICSHRR 148 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444444444445555555554555554
No 169
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=44.41 E-value=28 Score=27.99 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcCC
Q 044619 61 IAIIGILASAFL-LVSYYTILSKYCGNT 87 (281)
Q Consensus 61 iiii~il~~~~l-lv~~~~i~~~~c~~~ 87 (281)
-++||-|..+.+ .+....++.|+|+++
T Consensus 87 p~VIGGLcaL~LaamGA~~LLrR~cRr~ 114 (126)
T PF03229_consen 87 PLVIGGLCALTLAAMGAGALLRRCCRRA 114 (126)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333 334444555555554
No 170
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=44.24 E-value=33 Score=38.17 Aligned_cols=13 Identities=0% Similarity=-0.041 Sum_probs=9.2
Q ss_pred CccchHHHHHHHh
Q 044619 170 HAFHVACVDRWLK 182 (281)
Q Consensus 170 H~Fh~~Ci~~Wl~ 182 (281)
-+|..+=+..|++
T Consensus 397 ~Vl~~e~L~~v~~ 409 (1204)
T TIGR00917 397 PVLDDDNLKLLFD 409 (1204)
T ss_pred ccCCHHHHHHHHH
Confidence 4777777777764
No 171
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=44.24 E-value=25 Score=26.84 Aligned_cols=6 Identities=17% Similarity=0.490 Sum_probs=2.6
Q ss_pred HHhcCC
Q 044619 82 KYCGNT 87 (281)
Q Consensus 82 ~~c~~~ 87 (281)
.+|..|
T Consensus 53 vCC~kR 58 (94)
T PF05393_consen 53 VCCKKR 58 (94)
T ss_pred HHHHHh
Confidence 344444
No 172
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=44.21 E-value=27 Score=23.53 Aligned_cols=43 Identities=21% Similarity=0.575 Sum_probs=18.5
Q ss_pred CcceeeccccccCcceeecCCCCCccchHHHHHHHhcC-----CCCcccccc
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSH-----SNCPLCRAN 193 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~-----~~CP~CR~~ 193 (281)
..|+|....+.. .++-. .|.|.-+.+ +..||..+ -.||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~-~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGK-NCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEET-T--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCC-cCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 357777766655 34545 498874322 44566432 269999764
No 173
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=43.94 E-value=13 Score=23.38 Aligned_cols=26 Identities=31% Similarity=0.745 Sum_probs=14.8
Q ss_pred cceeeccccccCcc-------eeecCCCCCccc
Q 044619 148 DCSVCLSEFEEDES-------LRLLPKCNHAFH 173 (281)
Q Consensus 148 ~C~ICl~~~~~~~~-------~~~lp~C~H~Fh 173 (281)
.|+-|-..|..++. ....++|+|+|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 56667766665432 123346777775
No 174
>TIGR03024 arch_pef_cterm PEF-C-terminal archaeal protein sorting domain. This domain, distantly related to the PEP-Cterm domain described in model TIGR02595, is found in Methanosarcina mazei in four different proteins, as well as in other archaea such as Methanococcoides burtonii. Several proteins with this domain have their genes only a short distance from a distant homology of EpsH, a proposed integral membrane transpeptidase.
Probab=43.90 E-value=31 Score=20.31 Aligned_cols=7 Identities=29% Similarity=0.724 Sum_probs=2.8
Q ss_pred CchhHHH
Q 044619 55 SFSPLVI 61 (281)
Q Consensus 55 ~f~~lvi 61 (281)
.|+.+.+
T Consensus 3 EF~~i~l 9 (26)
T TIGR03024 3 EFSTIAL 9 (26)
T ss_pred CCcchHH
Confidence 3453333
No 175
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=43.83 E-value=15 Score=33.95 Aligned_cols=12 Identities=25% Similarity=0.091 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 044619 72 LLVSYYTILSKY 83 (281)
Q Consensus 72 llv~~~~i~~~~ 83 (281)
+++++.+++.|+
T Consensus 289 ~i~~Ig~~ifK~ 300 (305)
T PF04639_consen 289 LIVFIGYFIFKR 300 (305)
T ss_pred HHHHhhheeeEe
Confidence 333333333343
No 176
>PHA02650 hypothetical protein; Provisional
Probab=43.39 E-value=58 Score=24.36 Aligned_cols=25 Identities=8% Similarity=0.216 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 044619 57 SPLVIAIIGILASAFLLVSYYTILS 81 (281)
Q Consensus 57 ~~lviiii~il~~~~llv~~~~i~~ 81 (281)
..++++++.+++.+++++.|+-.+.
T Consensus 50 ~~~ii~i~~v~i~~l~~flYLK~~~ 74 (81)
T PHA02650 50 QNFIFLIFSLIIVALFSFFVFKGYT 74 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444445555555555555443
No 177
>PRK14710 hypothetical protein; Provisional
Probab=42.79 E-value=19 Score=26.44 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=17.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHH
Q 044619 53 SPSFSPLVIAIIGILASAFLLVSYYT 78 (281)
Q Consensus 53 ~~~f~~lviiii~il~~~~llv~~~~ 78 (281)
+++++-++|.++++++.+++.+.-|.
T Consensus 5 ssn~skm~ififaiii~v~lcv~tyl 30 (86)
T PRK14710 5 SSNLSKMIIFIFAIIIIVVLCVITYL 30 (86)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhhe
Confidence 34677788877777776665555444
No 178
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=42.69 E-value=13 Score=25.43 Aligned_cols=41 Identities=34% Similarity=0.824 Sum_probs=20.4
Q ss_pred ceeeccccccCc------ceeecCCCCCccchHHHHHHH-hcCCCCccc
Q 044619 149 CSVCLSEFEEDE------SLRLLPKCNHAFHVACVDRWL-KSHSNCPLC 190 (281)
Q Consensus 149 C~ICl~~~~~~~------~~~~lp~C~H~Fh~~Ci~~Wl-~~~~~CP~C 190 (281)
|.-|+..|.... ....-|+|++.|+.+| +..+ +.--+||-|
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC 49 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGC 49 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCC
Confidence 445666666542 3455678999999999 3332 223368887
No 179
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=42.43 E-value=29 Score=22.55 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=14.4
Q ss_pred cCCCCCCCCchhHHHHHHHHHHHHHHH
Q 044619 47 FLHDNSSPSFSPLVIAIIGILASAFLL 73 (281)
Q Consensus 47 ~~~~~s~~~f~~lviiii~il~~~~ll 73 (281)
|.++...-.+.|..++++++.+.++++
T Consensus 9 y~ed~~giki~P~~Vl~~si~fi~~V~ 35 (41)
T PF03911_consen 9 YEEDAPGIKIDPKTVLIISIAFIAIVI 35 (41)
T ss_dssp ----S-SS-BSCCHHHHHHHHHHHHHH
T ss_pred eeccCCcceeCCeehHHHHHHHHHHHH
Confidence 445666677888887777766655544
No 180
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=42.38 E-value=32 Score=23.25 Aligned_cols=20 Identities=20% Similarity=0.693 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhcCCCc
Q 044619 70 AFLLVSYYTILSKYCGNTNS 89 (281)
Q Consensus 70 ~~llv~~~~i~~~~c~~~~~ 89 (281)
+++++.|++-+.+||+..+.
T Consensus 12 ~lv~~gy~~hmkrycrafrq 31 (54)
T PF13260_consen 12 VLVVVGYFCHMKRYCRAFRQ 31 (54)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44567788888899987643
No 181
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=42.12 E-value=7.9 Score=30.16 Aligned_cols=26 Identities=12% Similarity=0.321 Sum_probs=15.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH
Q 044619 55 SFSPLVIAIIGILASAFLLVSYYTIL 80 (281)
Q Consensus 55 ~f~~lviiii~il~~~~llv~~~~i~ 80 (281)
....++++++++++.+++|..+|.|+
T Consensus 60 ~~~iili~lls~v~IlVily~IyYFV 85 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYAIYYFV 85 (101)
T ss_pred cccchHHHHHHHHHHHHHHhhheEEE
Confidence 35566776666666666665555554
No 182
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=41.96 E-value=8.5 Score=35.82 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 044619 64 IGILASAFLLV 74 (281)
Q Consensus 64 i~il~~~~llv 74 (281)
++++++++||+
T Consensus 151 paVVI~~iLLI 161 (290)
T PF05454_consen 151 PAVVIAAILLI 161 (290)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 183
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=41.86 E-value=23 Score=21.23 Aligned_cols=37 Identities=24% Similarity=0.590 Sum_probs=23.5
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccc
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANL 194 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l 194 (281)
.|..|-..+...+.. +.. =+..||..|+ .|..|..+|
T Consensus 1 ~C~~C~~~i~~~~~~-~~~-~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELV-LRA-LGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEE-EEe-CCccccccCC--------CCcccCCcC
Confidence 377788877765232 222 4678888874 467776665
No 184
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.33 E-value=21 Score=32.56 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=37.8
Q ss_pred CcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccC
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
..|+|---+|........+..|||+|-..-+.+- ..++|++|.+.+...
T Consensus 112 fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 112 FICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQED 160 (293)
T ss_pred eecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccccc
Confidence 4599988888776655556569999999998874 477899998877543
No 185
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=41.03 E-value=25 Score=33.26 Aligned_cols=67 Identities=18% Similarity=0.285 Sum_probs=40.9
Q ss_pred CHHHHhhcceeeeecCCCC--cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccc
Q 044619 125 DEVLIKSITVCKYKKGDGL--IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRA 192 (281)
Q Consensus 125 ~~~~i~~lp~~~~~~~~~~--~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~ 192 (281)
..+.-.-+|...+...... .....|-.|.++.......+.- .|.|.||.+|=.---..-..||-|-.
T Consensus 307 ARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~-~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 307 ARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCE-SCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred HHHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEch-hccceeeccchHHHHhhhhcCCCcCC
Confidence 3333334454444443322 2345699998887776666544 59999999993332234457999963
No 186
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.46 E-value=13 Score=34.40 Aligned_cols=41 Identities=17% Similarity=0.388 Sum_probs=31.0
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCC
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS 185 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~ 185 (281)
....|.+|.|.+++..-|..-..=.|.||..|-++-++.+.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhc
Confidence 34689999999998755543223469999999999887654
No 187
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=39.25 E-value=13 Score=26.34 Aligned_cols=36 Identities=17% Similarity=0.434 Sum_probs=18.2
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHH
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRW 180 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~W 180 (281)
+...|.+|...|..-..-.--..||++|+..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 467899999999654333333469999999997543
No 188
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=39.17 E-value=53 Score=23.81 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044619 59 LVIAIIGILASAFLLVSYY 77 (281)
Q Consensus 59 lviiii~il~~~~llv~~~ 77 (281)
+.+.++|+.+.+++|++++
T Consensus 5 l~i~i~Gm~iVF~~L~lL~ 23 (79)
T PF04277_consen 5 LQIMIIGMGIVFLVLILLI 23 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555554444444433
No 189
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=38.49 E-value=41 Score=22.95 Aligned_cols=8 Identities=38% Similarity=0.181 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 044619 73 LVSYYTIL 80 (281)
Q Consensus 73 lv~~~~i~ 80 (281)
.++++++.
T Consensus 17 g~~I~~~~ 24 (50)
T PF12606_consen 17 GLSICTTL 24 (50)
T ss_pred HHHHHHHh
Confidence 33334444
No 190
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=37.93 E-value=21 Score=22.40 Aligned_cols=26 Identities=31% Similarity=0.721 Sum_probs=14.5
Q ss_pred cceeeccccccCcc-------eeecCCCCCccc
Q 044619 148 DCSVCLSEFEEDES-------LRLLPKCNHAFH 173 (281)
Q Consensus 148 ~C~ICl~~~~~~~~-------~~~lp~C~H~Fh 173 (281)
.|.=|.-.|..++. ....++|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 46666666665432 112345778774
No 191
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=37.68 E-value=24 Score=29.24 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044619 60 VIAIIGILASAFLLVSYYTI 79 (281)
Q Consensus 60 viiii~il~~~~llv~~~~i 79 (281)
-+.+++..++++++|.+.++
T Consensus 34 ~l~LlsLgl~~LLLV~IcVi 53 (138)
T PF03954_consen 34 RLLLLSLGLSLLLLVVICVI 53 (138)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555554444
No 192
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=37.03 E-value=24 Score=38.53 Aligned_cols=29 Identities=31% Similarity=0.380 Sum_probs=23.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044619 55 SFSPLVIAIIGILASAFLLVSYYTILSKY 83 (281)
Q Consensus 55 ~f~~lviiii~il~~~~llv~~~~i~~~~ 83 (281)
.-.|++|+|+++|+++++|.++.+++.|+
T Consensus 974 ~~vp~wiIi~svl~GLLlL~llv~~LwK~ 1002 (1030)
T KOG3637|consen 974 RPVPLWIIILSVLGGLLLLALLVLLLWKC 1002 (1030)
T ss_pred CccceeeehHHHHHHHHHHHHHHHHHHhc
Confidence 34688999999999998888888887664
No 193
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=35.08 E-value=44 Score=31.06 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 044619 64 IGILASAFLLVSYYTILSKYCGNT 87 (281)
Q Consensus 64 i~il~~~~llv~~~~i~~~~c~~~ 87 (281)
|+.|+.+++.|.+++++++..+||
T Consensus 263 iaalvllil~vvliiLYiWlyrrR 286 (295)
T TIGR01478 263 IAALVLIILTVVLIILYIWLYRRR 286 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444455554444443
No 194
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=35.01 E-value=65 Score=25.79 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 044619 57 SPLVIAIIGILASAFLLVSYYTIL 80 (281)
Q Consensus 57 ~~lviiii~il~~~~llv~~~~i~ 80 (281)
+.+++.+|.+|+..+.|++|.+++
T Consensus 61 ~lffvglii~LivSLaLVsFvIFL 84 (128)
T PF15145_consen 61 SLFFVGLIIVLIVSLALVSFVIFL 84 (128)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333344444444443
No 195
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.75 E-value=20 Score=34.72 Aligned_cols=44 Identities=25% Similarity=0.548 Sum_probs=32.2
Q ss_pred CCcceeeccccccCc--ceeecCCCCCccchHHHHHHHhcCCCCccc
Q 044619 146 GTDCSVCLSEFEEDE--SLRLLPKCNHAFHVACVDRWLKSHSNCPLC 190 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~--~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~C 190 (281)
...|+.|.-.++... .-.... |||-|+..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 567888877655433 233444 99999999999998888877655
No 196
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=34.54 E-value=32 Score=23.11 Aligned_cols=35 Identities=17% Similarity=0.413 Sum_probs=23.9
Q ss_pred CcceeeccccccCcceeecCCCCCccchHHHHHHH
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWL 181 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl 181 (281)
..|.+|-..|..-..-.....||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 57888888777643222333699999999976543
No 197
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=34.24 E-value=16 Score=24.96 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 044619 67 LASAFLLVSYYTILSKYCGN 86 (281)
Q Consensus 67 l~~~~llv~~~~i~~~~c~~ 86 (281)
++++++++.+++++.+.|+-
T Consensus 21 ~A~vlfi~Gi~iils~kckC 40 (50)
T PF02038_consen 21 FAGVLFILGILIILSGKCKC 40 (50)
T ss_dssp HHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHHcCcccc
Confidence 33444455555566555543
No 198
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=34.13 E-value=14 Score=26.55 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044619 63 IIGILASAFLLVSYYTIL 80 (281)
Q Consensus 63 ii~il~~~~llv~~~~i~ 80 (281)
|.|+++++++.+++++++
T Consensus 15 IaG~Vvgll~ailLIlf~ 32 (64)
T PF01034_consen 15 IAGGVVGLLFAILLILFL 32 (64)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 199
>PF15018 InaF-motif: TRP-interacting helix
Probab=34.04 E-value=52 Score=21.17 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 044619 57 SPLVIAIIGILASAFLLVSYYTIL 80 (281)
Q Consensus 57 ~~lviiii~il~~~~llv~~~~i~ 80 (281)
..++.-++++-+++++|..||.++
T Consensus 8 ~tV~~Yl~~VSl~Ai~LsiYY~f~ 31 (38)
T PF15018_consen 8 LTVVAYLFSVSLAAIVLSIYYIFF 31 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhee
Confidence 445556677777777777777765
No 200
>PHA03164 hypothetical protein; Provisional
Probab=33.78 E-value=37 Score=25.26 Aligned_cols=13 Identities=31% Similarity=0.421 Sum_probs=5.0
Q ss_pred chhHHHHHHHHHH
Q 044619 56 FSPLVIAIIGILA 68 (281)
Q Consensus 56 f~~lviiii~il~ 68 (281)
|..+++.-++|..
T Consensus 58 ftFlvLtgLaIam 70 (88)
T PHA03164 58 FTFLVLTGLAIAM 70 (88)
T ss_pred eehHHHHHHHHHH
Confidence 3334443343333
No 201
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=33.52 E-value=15 Score=38.02 Aligned_cols=68 Identities=19% Similarity=0.531 Sum_probs=41.5
Q ss_pred CCCCCHHHHhhcceeeeecCCCCcCCCcceeeccccccCcc-------eeecCCCCCccchHHHHHH----------Hhc
Q 044619 121 TRGLDEVLIKSITVCKYKKGDGLIEGTDCSVCLSEFEEDES-------LRLLPKCNHAFHVACVDRW----------LKS 183 (281)
Q Consensus 121 ~~~l~~~~i~~lp~~~~~~~~~~~~~~~C~ICl~~~~~~~~-------~~~lp~C~H~Fh~~Ci~~W----------l~~ 183 (281)
..-+..-+++.+|.-+|++ .|-||-|+=.+.+. .-.- .|...||..|-..- +.+
T Consensus 100 V~TMEPIiLq~VP~dRfnK--------tCYIC~E~GrpnkA~~GACMtCNKs-~CkqaFHVTCAQ~~GLLCEE~gn~~dN 170 (900)
T KOG0956|consen 100 VHTMEPIILQDVPHDRFNK--------TCYICNEEGRPNKAAKGACMTCNKS-GCKQAFHVTCAQRAGLLCEEEGNISDN 170 (900)
T ss_pred cccccceeeccCchhhhcc--------eeeeecccCCccccccccceecccc-cchhhhhhhHhhhhccceecccccccc
Confidence 3344444555555444444 89999987443221 1123 48899999997643 234
Q ss_pred CCCCcccccccccC
Q 044619 184 HSNCPLCRANLFLI 197 (281)
Q Consensus 184 ~~~CP~CR~~l~~~ 197 (281)
-+.|.+|+.-+...
T Consensus 171 VKYCGYCk~HfsKl 184 (900)
T KOG0956|consen 171 VKYCGYCKYHFSKL 184 (900)
T ss_pred ceechhHHHHHHHh
Confidence 55799998877543
No 202
>PHA02844 putative transmembrane protein; Provisional
Probab=33.22 E-value=1.1e+02 Score=22.66 Aligned_cols=17 Identities=29% Similarity=0.510 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044619 61 IAIIGILASAFLLVSYY 77 (281)
Q Consensus 61 iiii~il~~~~llv~~~ 77 (281)
++++.+++.+++++.|+
T Consensus 53 i~i~~v~~~~~~~flYL 69 (75)
T PHA02844 53 LTIIFVVFATFLTFLYL 69 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 203
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=33.18 E-value=51 Score=25.87 Aligned_cols=24 Identities=25% Similarity=0.620 Sum_probs=18.6
Q ss_pred CCccchHHHHHHHhc---------CCCCccccc
Q 044619 169 NHAFHVACVDRWLKS---------HSNCPLCRA 192 (281)
Q Consensus 169 ~H~Fh~~Ci~~Wl~~---------~~~CP~CR~ 192 (281)
.=.|+..||..++.. +..||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 677999999988732 336999986
No 204
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.16 E-value=73 Score=31.68 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=6.9
Q ss_pred ceee-ecCCCCCCc
Q 044619 32 WCYI-IFPPPPPSF 44 (281)
Q Consensus 32 ~~~~-~~ppppp~~ 44 (281)
+|-- ..|+++|.+
T Consensus 106 ~CN~~~i~~~~~~~ 119 (513)
T KOG2052|consen 106 YCNNILIPLLLPHP 119 (513)
T ss_pred ccccccCCCCCCCC
Confidence 4553 356666544
No 205
>PHA03163 hypothetical protein; Provisional
Probab=32.94 E-value=85 Score=24.01 Aligned_cols=29 Identities=24% Similarity=0.443 Sum_probs=14.5
Q ss_pred CchhHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 044619 55 SFSPLVIAI-IGILASAFLLVSYYTILSKY 83 (281)
Q Consensus 55 ~f~~lviii-i~il~~~~llv~~~~i~~~~ 83 (281)
.|+.+++++ +.+++.+++++..|..+.|+
T Consensus 56 SFSSIWaliNv~Ivl~A~~iyL~y~CF~kF 85 (92)
T PHA03163 56 SFSSIWAILNVLIMLIACIIYCIYMCFNKF 85 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666555 33444444445545555443
No 206
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=32.36 E-value=66 Score=35.09 Aligned_cols=52 Identities=17% Similarity=0.426 Sum_probs=36.0
Q ss_pred CCCcceeecccccc---CcceeecCCCCCccchHHHHH-HHhcCCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEE---DESLRLLPKCNHAFHVACVDR-WLKSHSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~---~~~~~~lp~C~H~Fh~~Ci~~-Wl~~~~~CP~CR~~l~~ 196 (281)
....|.||-++... ++.-...-.|+--.|..|.+- .-..++.||.|+.....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 45689999998754 333333334777799999953 23456789999988764
No 207
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.35 E-value=17 Score=34.05 Aligned_cols=49 Identities=20% Similarity=0.541 Sum_probs=40.1
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
..+.|-||...+...... . +|.|-|+..|...|......||-||.-...
T Consensus 104 ~~~~~~~~~g~l~vpt~~--q-g~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRI--Q-GCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CccceeeeeeeEEecccc--c-CceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 457899999988775433 2 599999999999999999999999876643
No 208
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=32.34 E-value=88 Score=23.15 Aligned_cols=7 Identities=14% Similarity=0.088 Sum_probs=3.0
Q ss_pred HHHhcCC
Q 044619 81 SKYCGNT 87 (281)
Q Consensus 81 ~~~c~~~ 87 (281)
..|..++
T Consensus 24 lHY~sk~ 30 (75)
T PF06667_consen 24 LHYRSKW 30 (75)
T ss_pred HHHHHhc
Confidence 3444444
No 209
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=32.08 E-value=56 Score=25.83 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044619 62 AIIGILASAFLLVSYYTILS 81 (281)
Q Consensus 62 iii~il~~~~llv~~~~i~~ 81 (281)
+++++++.+++|..++.++.
T Consensus 2 ~Ll~il~llLll~l~asl~~ 21 (107)
T PF15330_consen 2 LLLGILALLLLLSLAASLLA 21 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45666666655555555554
No 210
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=31.92 E-value=80 Score=22.12 Aligned_cols=45 Identities=24% Similarity=0.695 Sum_probs=32.3
Q ss_pred CcceeeccccccCc-ceeecCCCC--CccchHHHHHHHhcCCCCccccccccc
Q 044619 147 TDCSVCLSEFEEDE-SLRLLPKCN--HAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 147 ~~C~ICl~~~~~~~-~~~~lp~C~--H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
..|-.|-.++..+. ...+ |. ..|+..|.+.-| +..||.|-..|..
T Consensus 6 pnCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 35667777776654 3333 44 579999999976 7899999877754
No 211
>PRK01844 hypothetical protein; Provisional
Probab=31.67 E-value=88 Score=23.01 Aligned_cols=8 Identities=38% Similarity=0.650 Sum_probs=2.9
Q ss_pred HHHHHHHh
Q 044619 77 YTILSKYC 84 (281)
Q Consensus 77 ~~i~~~~c 84 (281)
+++..|+.
T Consensus 22 ff~ark~~ 29 (72)
T PRK01844 22 FFIARKYM 29 (72)
T ss_pred HHHHHHHH
Confidence 33333333
No 212
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=31.64 E-value=28 Score=23.23 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=23.1
Q ss_pred ceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 149 CSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 149 C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
|+.|-..+...+.+.. . -+..||..| -.|-.|++.|..
T Consensus 1 C~~C~~~I~~~~~~~~-~-~~~~~H~~C--------f~C~~C~~~l~~ 38 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIK-A-MGKFWHPEC--------FKCSKCGKPLND 38 (58)
T ss_dssp BTTTSSBESSSSEEEE-E-TTEEEETTT--------SBETTTTCBTTT
T ss_pred CCCCCCCccCcEEEEE-e-CCcEEEccc--------cccCCCCCccCC
Confidence 5566666665544322 2 567788777 357777777643
No 213
>PTZ00370 STEVOR; Provisional
Probab=31.48 E-value=50 Score=30.74 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 044619 64 IGILASAFLLVSYYTILSKYCGNT 87 (281)
Q Consensus 64 i~il~~~~llv~~~~i~~~~c~~~ 87 (281)
|+.|+.+++.|.+++++++..+||
T Consensus 259 iaalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 259 IAALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444455554444444
No 214
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.38 E-value=47 Score=25.65 Aligned_cols=9 Identities=44% Similarity=0.907 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 044619 64 IGILASAFL 72 (281)
Q Consensus 64 i~il~~~~l 72 (281)
|+++++++|
T Consensus 9 L~l~LA~lL 17 (95)
T PF07172_consen 9 LGLLLAALL 17 (95)
T ss_pred HHHHHHHHH
Confidence 333333333
No 215
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=30.74 E-value=96 Score=23.50 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 044619 58 PLVIAIIGILASAFLLVSYYTI 79 (281)
Q Consensus 58 ~lviiii~il~~~~llv~~~~i 79 (281)
-+++++.++++.++++++++.+
T Consensus 35 dFvLVic~~lVfVii~lFi~ll 56 (84)
T PF06143_consen 35 DFVLVICCFLVFVIIVLFILLL 56 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455455554444444444333
No 216
>PHA02975 hypothetical protein; Provisional
Probab=30.46 E-value=85 Score=22.83 Aligned_cols=19 Identities=37% Similarity=0.387 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044619 59 LVIAIIGILASAFLLVSYY 77 (281)
Q Consensus 59 lviiii~il~~~~llv~~~ 77 (281)
++++++.++..+++++.|+
T Consensus 47 ~ii~i~~v~~~~~~~flYL 65 (69)
T PHA02975 47 LIIFIIFITCIAVFTFLYL 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443
No 217
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=30.41 E-value=74 Score=22.14 Aligned_cols=25 Identities=24% Similarity=0.479 Sum_probs=17.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 044619 56 FSPLVIAIIGILASAFLLVSYYTIL 80 (281)
Q Consensus 56 f~~lviiii~il~~~~llv~~~~i~ 80 (281)
.+|.-+++.|+++++++++.++.+.
T Consensus 28 ~~p~~~Ii~gii~~~~fV~~Lv~lV 52 (56)
T PF11174_consen 28 GSPVHFIIVGIILAALFVAGLVLLV 52 (56)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777766654
No 218
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=30.00 E-value=1.3e+02 Score=19.82 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 044619 67 LASAFLLVSYYTILS 81 (281)
Q Consensus 67 l~~~~llv~~~~i~~ 81 (281)
+.+++++++++.++.
T Consensus 13 ~~~v~~~~~F~gi~~ 27 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVI 27 (49)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444434333
No 219
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=29.78 E-value=38 Score=22.98 Aligned_cols=25 Identities=28% Similarity=0.850 Sum_probs=14.6
Q ss_pred cCCCCCccchHHHHHHHhcCCCCccc
Q 044619 165 LPKCNHAFHVACVDRWLKSHSNCPLC 190 (281)
Q Consensus 165 lp~C~H~Fh~~Ci~~Wl~~~~~CP~C 190 (281)
.+.|||.|-..= ..-......||.|
T Consensus 31 C~~Cgh~w~~~v-~~R~~~~~~CP~C 55 (55)
T PF14311_consen 31 CPKCGHEWKASV-NDRTRRGKGCPYC 55 (55)
T ss_pred CCCCCCeeEccH-hhhccCCCCCCCC
Confidence 345777666542 2222556679988
No 220
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=29.55 E-value=1.8e+02 Score=22.84 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044619 57 SPLVIAIIGILASAFLLVSYYTILSKY 83 (281)
Q Consensus 57 ~~lviiii~il~~~~llv~~~~i~~~~ 83 (281)
.--|-+++|++++++++-+++++.+|+
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC 40 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKC 40 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888887777777666653
No 221
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=29.07 E-value=30 Score=21.10 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=12.9
Q ss_pred CCCCccchHHHHHHHhcCCCCccccc
Q 044619 167 KCNHAFHVACVDRWLKSHSNCPLCRA 192 (281)
Q Consensus 167 ~C~H~Fh~~Ci~~Wl~~~~~CP~CR~ 192 (281)
.|||++-..- ....||.|.+
T Consensus 6 ~CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 6 VCGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCCEECCCc------CCCcCcCCCC
Confidence 4777765443 4457999965
No 222
>PHA02819 hypothetical protein; Provisional
Probab=28.76 E-value=1.6e+02 Score=21.56 Aligned_cols=20 Identities=20% Similarity=0.482 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 044619 58 PLVIAIIGILASAFLLVSYY 77 (281)
Q Consensus 58 ~lviiii~il~~~~llv~~~ 77 (281)
.++++++.+++.+++++.|+
T Consensus 48 ~~ii~l~~~~~~~~~~flYL 67 (71)
T PHA02819 48 YLIIGLVTIVFVIIFIIFYL 67 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443
No 223
>PHA03054 IMV membrane protein; Provisional
Probab=28.61 E-value=1.1e+02 Score=22.50 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 044619 58 PLVIAIIGILASAFLLVSY 76 (281)
Q Consensus 58 ~lviiii~il~~~~llv~~ 76 (281)
.++++++.+++.+++++.|
T Consensus 50 ~~ii~l~~v~~~~l~~flY 68 (72)
T PHA03054 50 WLIIIFFIVLILLLLIYLY 68 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 224
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=28.58 E-value=53 Score=30.46 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044619 59 LVIAIIGILASAFLLVS 75 (281)
Q Consensus 59 lviiii~il~~~~llv~ 75 (281)
++=|++|+.+++++|+.
T Consensus 272 ~vPIaVG~~La~lvliv 288 (306)
T PF01299_consen 272 LVPIAVGAALAGLVLIV 288 (306)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33344454444444333
No 225
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=27.77 E-value=1.1e+02 Score=20.91 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=9.8
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhcCC
Q 044619 62 AIIG-ILASAFLLVSYYTILSKYCGNT 87 (281)
Q Consensus 62 iii~-il~~~~llv~~~~i~~~~c~~~ 87 (281)
..+| +++++++++++.++..+.+-++
T Consensus 4 ~tiG~~~~~~~I~~lIgfity~mfV~K 30 (53)
T PF13131_consen 4 LTIGIILFTIFIFFLIGFITYKMFVKK 30 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheec
Confidence 3444 3333333333333333333333
No 227
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=27.57 E-value=59 Score=26.00 Aligned_cols=27 Identities=26% Similarity=0.210 Sum_probs=15.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHH
Q 044619 53 SPSFSPLVIAIIGILASAFLLVSYYTI 79 (281)
Q Consensus 53 ~~~f~~lviiii~il~~~~llv~~~~i 79 (281)
+-.|..+++++++-|+.+.|++++++-
T Consensus 61 ~lffvglii~LivSLaLVsFvIFLiiQ 87 (128)
T PF15145_consen 61 SLFFVGLIIVLIVSLALVSFVIFLIIQ 87 (128)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHheee
Confidence 345556666666666666665555544
No 228
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=27.51 E-value=74 Score=32.89 Aligned_cols=8 Identities=25% Similarity=0.521 Sum_probs=3.8
Q ss_pred HHHhcCCC
Q 044619 81 SKYCGNTN 88 (281)
Q Consensus 81 ~~~c~~~~ 88 (281)
+++|+..+
T Consensus 291 ~~LCRk~K 298 (684)
T PF12877_consen 291 WKLCRKNK 298 (684)
T ss_pred HHHhcccc
Confidence 34555443
No 229
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.46 E-value=61 Score=32.90 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044619 61 IAIIGILASAFLLVSYYTIL 80 (281)
Q Consensus 61 iiii~il~~~~llv~~~~i~ 80 (281)
+++|+|++.+++++++.+++
T Consensus 4 ~~ii~i~ii~i~~~~~~~~~ 23 (569)
T PRK04778 4 YLIIAIVVIIIIAYLAGLIL 23 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444444344444433333
No 230
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=27.06 E-value=19 Score=24.53 Aligned_cols=19 Identities=32% Similarity=0.739 Sum_probs=14.7
Q ss_pred eeecCCCCCccchHHHHHH
Q 044619 162 LRLLPKCNHAFHVACVDRW 180 (281)
Q Consensus 162 ~~~lp~C~H~Fh~~Ci~~W 180 (281)
....+.|+|.|+..|...|
T Consensus 40 ~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 40 RVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred eeECCCCCCeECCCCCCcC
Confidence 3445469999999998888
No 231
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=26.85 E-value=23 Score=31.07 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=8.4
Q ss_pred HHHHHHHhcCCCcccc
Q 044619 77 YTILSKYCGNTNSASR 92 (281)
Q Consensus 77 ~~i~~~~c~~~~~~~r 92 (281)
-.+++|+|..+..++|
T Consensus 117 TtlvlK~C~~~s~~~r 132 (205)
T PF15298_consen 117 TTLVLKNCCAQSQNRR 132 (205)
T ss_pred hhhhhhhhhhhhcccC
Confidence 3444566766554443
No 232
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=26.43 E-value=23 Score=24.00 Aligned_cols=10 Identities=50% Similarity=0.992 Sum_probs=5.6
Q ss_pred CCcccccccc
Q 044619 186 NCPLCRANLF 195 (281)
Q Consensus 186 ~CP~CR~~l~ 195 (281)
.||+|.++|.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 8999999984
No 233
>PF05434 Tmemb_9: TMEM9; InterPro: IPR008853 This family contains several eukaryotic transmembrane proteins which are homologous to Homo sapiens transmembrane protein 9 Q9P0T7 from SWISSPROT. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to H. sapiens and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localised to the late endosomes and lysosomes []. Members of this family contain CXCXC repeats IPR004153 from INTERPRO in their N-terminal region.; GO: 0016021 integral to membrane
Probab=26.39 E-value=57 Score=27.38 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044619 57 SPLVIAIIGILASAFLLVSYYTILSKYC 84 (281)
Q Consensus 57 ~~lviiii~il~~~~llv~~~~i~~~~c 84 (281)
-..||++|.|+..+++.++|++++--..
T Consensus 55 kVvVIivl~Vi~lLvlYM~fL~~ldPll 82 (149)
T PF05434_consen 55 KVVVIIVLWVIGLLVLYMLFLMCLDPLL 82 (149)
T ss_pred EEEEEEeHHHHHHHHHHHHHHHHHhHHH
Confidence 3334555555554444455555554444
No 234
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=25.78 E-value=1.3e+02 Score=22.23 Aligned_cols=10 Identities=10% Similarity=0.242 Sum_probs=4.4
Q ss_pred HHHHHHhcCC
Q 044619 78 TILSKYCGNT 87 (281)
Q Consensus 78 ~i~~~~c~~~ 87 (281)
.++..|..++
T Consensus 21 wl~lHY~~k~ 30 (75)
T TIGR02976 21 WLILHYRSKR 30 (75)
T ss_pred HHHHHHHhhh
Confidence 3333555444
No 235
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=25.47 E-value=62 Score=24.91 Aligned_cols=32 Identities=28% Similarity=0.733 Sum_probs=22.0
Q ss_pred CCcceeeccccccCcceeec-CCCCCccchHHHHH
Q 044619 146 GTDCSVCLSEFEEDESLRLL-PKCNHAFHVACVDR 179 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~l-p~C~H~Fh~~Ci~~ 179 (281)
...|.||... .|..+.-. +.|...||..|...
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 5689999987 33333211 24888999999765
No 236
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=25.32 E-value=40 Score=19.90 Aligned_cols=29 Identities=21% Similarity=0.549 Sum_probs=9.8
Q ss_pred cceeeccccccCcceeecCCCCCccchHHH
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACV 177 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci 177 (281)
.|.+|......+..-.-. .|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~-~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCS-ECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-T-TT-----HHHH
T ss_pred cCCcCCCcCCCCceEECc-cCCCccChhcC
Confidence 477777776652233334 49999999885
No 237
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=25.16 E-value=83 Score=23.86 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044619 59 LVIAIIGILASAFLLVS 75 (281)
Q Consensus 59 lviiii~il~~~~llv~ 75 (281)
+||++.+.|++++++++
T Consensus 38 IVI~FWv~LA~FV~~lF 54 (90)
T PF15183_consen 38 IVIAFWVSLAAFVVFLF 54 (90)
T ss_pred eehhHHHHHHHHHHHHH
Confidence 34444444444333333
No 238
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=25.05 E-value=1.4e+02 Score=22.53 Aligned_cols=9 Identities=44% Similarity=0.534 Sum_probs=4.7
Q ss_pred CchhHHHHH
Q 044619 55 SFSPLVIAI 63 (281)
Q Consensus 55 ~f~~lviii 63 (281)
.|+.+++++
T Consensus 47 SFsSIW~ii 55 (82)
T PF03554_consen 47 SFSSIWAII 55 (82)
T ss_pred HHHHHHHHH
Confidence 455555544
No 239
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=25.04 E-value=45 Score=30.26 Aligned_cols=30 Identities=23% Similarity=0.146 Sum_probs=17.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 044619 51 NSSPSFSPLVIAIIGILASAFLLVSYYTIL 80 (281)
Q Consensus 51 ~s~~~f~~lviiii~il~~~~llv~~~~i~ 80 (281)
.||+.-..+||++||++.+++++.|-++=|
T Consensus 9 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (243)
T PF05279_consen 9 GSSFFTWFLVLALLGVWSSVAVVMFDLVDY 38 (243)
T ss_pred CCchHHHHHHHHHHHHHHhhHhhheehhhH
Confidence 344434456667777777777666554443
No 240
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=24.96 E-value=48 Score=28.84 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=9.1
Q ss_pred cchHHHHHHH--hcCCCCc
Q 044619 172 FHVACVDRWL--KSHSNCP 188 (281)
Q Consensus 172 Fh~~Ci~~Wl--~~~~~CP 188 (281)
....-+..|| .++..+|
T Consensus 124 ~~G~~~R~~L~~Lr~~~~p 142 (186)
T PF07406_consen 124 LPGENFRSYLLDLRNSSTP 142 (186)
T ss_pred cccccHHHHHHHHHhccCC
Confidence 3455677777 3444443
No 241
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=24.88 E-value=1.5e+02 Score=18.84 Aligned_cols=26 Identities=12% Similarity=0.515 Sum_probs=18.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH
Q 044619 55 SFSPLVIAIIGILASAFLLVSYYTIL 80 (281)
Q Consensus 55 ~f~~lviiii~il~~~~llv~~~~i~ 80 (281)
+++.+++-++|++..++.+.+++..+
T Consensus 5 ~LPsI~VPlVGlvfPai~Ma~lf~yI 30 (36)
T CHL00186 5 NLPSILVPLVGLVFPAIAMASLFLYI 30 (36)
T ss_pred cCchhHHhHHHHHHHHHHHHHHHHHh
Confidence 46667777888887777777666554
No 242
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=24.86 E-value=74 Score=28.27 Aligned_cols=46 Identities=30% Similarity=0.522 Sum_probs=23.6
Q ss_pred ceeee-cCCCCCCcc---ccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 044619 32 WCYII-FPPPPPSFD---EFLHDNSSPSFSPLVIAIIGILASAFLLVSYYT 78 (281)
Q Consensus 32 ~~~~~-~ppppp~~~---~~~~~~s~~~f~~lviiii~il~~~~llv~~~~ 78 (281)
-|=++ ||.+=|.|. .++.+.....++ +++.+++|+.+++++.++.+
T Consensus 154 tC~l~GYP~~~p~f~~~~~yDasP~~~~~p-~v~~i~~Vi~g~~~~g~~~~ 203 (211)
T PF02124_consen 154 TCRLIGYPDILPVFEDTATYDASPSAQGFP-MVISIIGVICGAGALGLLVL 203 (211)
T ss_pred EEEEeeCCCCCCcccceEEEcCCCccCCCc-EEEehHHHHHHHHHHHHHHh
Confidence 36666 888766554 333333444443 34444455555555544433
No 243
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=24.76 E-value=24 Score=34.15 Aligned_cols=28 Identities=32% Similarity=0.724 Sum_probs=0.0
Q ss_pred ecCCCCCccchHHHHHHHh------cCCCCcccccccc
Q 044619 164 LLPKCNHAFHVACVDRWLK------SHSNCPLCRANLF 195 (281)
Q Consensus 164 ~lp~C~H~Fh~~Ci~~Wl~------~~~~CP~CR~~l~ 195 (281)
.| +|||++-. ..|-. ...+||+||..=.
T Consensus 306 Yl-~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 306 YL-NCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp --------------------------------------
T ss_pred ec-cccceeee---cccccccccccccccCCCccccCC
Confidence 45 59998774 36753 2447999987543
No 244
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=24.72 E-value=1.3e+02 Score=19.37 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=18.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHH
Q 044619 54 PSFSPLVIAIIGILASAFLLVSYYTIL 80 (281)
Q Consensus 54 ~~f~~lviiii~il~~~~llv~~~~i~ 80 (281)
++++.+++-++|++..++.+.+++..+
T Consensus 8 s~LPsI~VPlVGlvfPai~Mallf~yI 34 (38)
T PRK11877 8 SWLPWIFVPLVGWVFPAVFMVLLGRYI 34 (38)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777888887777776665544
No 245
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=24.38 E-value=48 Score=34.87 Aligned_cols=46 Identities=28% Similarity=0.645 Sum_probs=31.0
Q ss_pred CCcceeecccccc----C-----cceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 146 GTDCSVCLSEFEE----D-----ESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 146 ~~~C~ICl~~~~~----~-----~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
...|+-|...|-. + ...-+.|.|+|--|..=|.+ .+.||+|...+.
T Consensus 1131 ~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1131 DLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred CCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 3457667666642 1 12345678999999887765 678999987654
No 246
>PRK01253 preprotein translocase subunit SecG; Reviewed
Probab=24.31 E-value=41 Score=23.26 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=19.8
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 044619 46 EFLHDNSSPSFSPLVIAIIGILASAFLLVS 75 (281)
Q Consensus 46 ~~~~~~s~~~f~~lviiii~il~~~~llv~ 75 (281)
.|.++...-.++|-.++++++++.++++++
T Consensus 19 yy~ed~~~iKi~P~~Vi~~~~~~~~~v~~L 48 (54)
T PRK01253 19 YFEEETEAIKIDPKTVIAIGLALGIFVLVL 48 (54)
T ss_pred hhhcccCccccCCeeeeeeHHHHHHHHHHH
Confidence 345566677788888777777666655444
No 247
>PF15102 TMEM154: TMEM154 protein family
Probab=24.27 E-value=30 Score=28.91 Aligned_cols=6 Identities=33% Similarity=0.456 Sum_probs=3.0
Q ss_pred CCCCCc
Q 044619 51 NSSPSF 56 (281)
Q Consensus 51 ~s~~~f 56 (281)
++..+|
T Consensus 52 ~~q~ef 57 (146)
T PF15102_consen 52 SSQLEF 57 (146)
T ss_pred CCCcce
Confidence 344555
No 248
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=24.27 E-value=25 Score=29.85 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044619 57 SPLVIAIIGILASAFLLVSYYTILSKY 83 (281)
Q Consensus 57 ~~lviiii~il~~~~llv~~~~i~~~~ 83 (281)
-.|+-+|+|+|+++-||..++++++|+
T Consensus 129 ~tLVGIIVGVLlaIG~igGIIivvvRK 155 (162)
T PF05808_consen 129 VTLVGIIVGVLLAIGFIGGIIIVVVRK 155 (162)
T ss_dssp ---------------------------
T ss_pred eeeeeehhhHHHHHHHHhheeeEEeeh
Confidence 356778888888888888887777653
No 249
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=24.16 E-value=1.7e+02 Score=17.94 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 044619 58 PLVIAIIGILASAFLLVSY 76 (281)
Q Consensus 58 ~lviiii~il~~~~llv~~ 76 (281)
.++...+.+++...+++.+
T Consensus 7 ~fiAtaLfi~iPt~FLiil 25 (31)
T PF05151_consen 7 AFIATALFILIPTAFLIIL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhe
Confidence 3344444444444333333
No 250
>PRK08388 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=24.12 E-value=2e+02 Score=23.05 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044619 59 LVIAIIGILASAFLLVSYYTILSKYCGN 86 (281)
Q Consensus 59 lviiii~il~~~~llv~~~~i~~~~c~~ 86 (281)
-.+++.+|.+++..+.+.+.++.+..++
T Consensus 78 QalvLTaIVI~~a~~A~~Lal~i~~yr~ 105 (119)
T PRK08388 78 QALVLTSIVIGVCVLSLAMALTINAYRH 105 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 251
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.90 E-value=41 Score=25.90 Aligned_cols=12 Identities=25% Similarity=0.960 Sum_probs=10.7
Q ss_pred cchHHHHHHHhc
Q 044619 172 FHVACVDRWLKS 183 (281)
Q Consensus 172 Fh~~Ci~~Wl~~ 183 (281)
||..|+..|.+.
T Consensus 43 FCRNCLs~Wy~e 54 (104)
T COG3492 43 FCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHH
Confidence 999999999854
No 252
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.88 E-value=90 Score=28.49 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044619 63 IIGILASAFLLVSYYTILS 81 (281)
Q Consensus 63 ii~il~~~~llv~~~~i~~ 81 (281)
++++++++++|+.+.+++.
T Consensus 4 ~v~vlVaa~llV~~i~l~l 22 (299)
T KOG3054|consen 4 IVAVLVAAALLVAVILLFL 22 (299)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555443
No 253
>PHA03265 envelope glycoprotein D; Provisional
Probab=23.76 E-value=26 Score=33.45 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 044619 56 FSPLVIAIIGILASAFLLVSYYTILSKYCGNTNSASRRR 94 (281)
Q Consensus 56 f~~lviiii~il~~~~llv~~~~i~~~~c~~~~~~~r~~ 94 (281)
-++++-++||.+++.++++..++++ |.||+..++.+
T Consensus 346 ~~~~~g~~ig~~i~glv~vg~il~~---~~rr~k~~~k~ 381 (402)
T PHA03265 346 NSTFVGISVGLGIAGLVLVGVILYV---CLRRKKELKKS 381 (402)
T ss_pred CCcccceEEccchhhhhhhhHHHHH---Hhhhhhhhhhh
Confidence 3455666677776666666655443 34444443333
No 254
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=23.59 E-value=82 Score=22.66 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 044619 62 AIIGILASAFLLVSYY 77 (281)
Q Consensus 62 iii~il~~~~llv~~~ 77 (281)
++++|++++++|+++.
T Consensus 3 IiiSIvLai~lLI~l~ 18 (66)
T PF07438_consen 3 IIISIVLAIALLISLS 18 (66)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 4556666666665543
No 255
>PF15050 SCIMP: SCIMP protein
Probab=23.56 E-value=61 Score=26.29 Aligned_cols=7 Identities=14% Similarity=0.064 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 044619 59 LVIAIIG 65 (281)
Q Consensus 59 lviiii~ 65 (281)
++|++-+
T Consensus 8 FWiiLAV 14 (133)
T PF15050_consen 8 FWIILAV 14 (133)
T ss_pred hHHHHHH
Confidence 4443333
No 256
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=23.23 E-value=76 Score=29.41 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=9.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHH
Q 044619 54 PSFSPLVIAIIGILASAFLLVSY 76 (281)
Q Consensus 54 ~~f~~lviiii~il~~~~llv~~ 76 (281)
..+.|+++.++..++.+++|+.|
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaY 292 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAY 292 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhh
Confidence 34455544333333333344443
No 257
>PHA03156 hypothetical protein; Provisional
Probab=23.10 E-value=1.6e+02 Score=22.50 Aligned_cols=28 Identities=21% Similarity=0.106 Sum_probs=12.4
Q ss_pred CchhHHHHH-HHHHHHHHHHHHHHHHHHH
Q 044619 55 SFSPLVIAI-IGILASAFLLVSYYTILSK 82 (281)
Q Consensus 55 ~f~~lviii-i~il~~~~llv~~~~i~~~ 82 (281)
.|+.+++++ +.+++.++++++-+.++.|
T Consensus 55 SFSSIWallN~~i~~~A~~ifL~y~CF~k 83 (90)
T PHA03156 55 TFSSIWAILNGIIFFCASLFFLRHLCFVK 83 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555544 3333334444444444443
No 258
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=22.77 E-value=73 Score=30.17 Aligned_cols=48 Identities=23% Similarity=0.596 Sum_probs=35.6
Q ss_pred CcceeeccccccCcceee-cCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 147 TDCSVCLSEFEEDESLRL-LPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~-lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
..|+||.+.....+...+ .| |+|..|..|+..-...+..||.||++..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCccc
Confidence 579999998754443322 33 8888888888888888889999995553
No 259
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=22.59 E-value=44 Score=34.45 Aligned_cols=33 Identities=9% Similarity=0.176 Sum_probs=21.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044619 53 SPSFSPLVIAIIGILASAFLLVSYYTILSKYCG 85 (281)
Q Consensus 53 ~~~f~~lviiii~il~~~~llv~~~~i~~~~c~ 85 (281)
+.+.++|+-+++.+++.+|+++++++.+.|.-+
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K 298 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIIILYWKLCRKNK 298 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHHHHHHHhcccc
Confidence 345556666666777777777777777776543
No 260
>TIGR03052 PS_I_psaI photosystem I reaction center subunit VIII. Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.
Probab=22.41 E-value=99 Score=18.97 Aligned_cols=24 Identities=8% Similarity=0.470 Sum_probs=14.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 044619 56 FSPLVIAIIGILASAFLLVSYYTI 79 (281)
Q Consensus 56 f~~lviiii~il~~~~llv~~~~i 79 (281)
++.+++-++|++..++.+++++..
T Consensus 3 LPsI~VPlVglvfPai~Ma~lf~y 26 (31)
T TIGR03052 3 LPSIFVPLVGLVFPAVFMALLFRY 26 (31)
T ss_pred CceeehhHHHHHHHHHHHHHHHHh
Confidence 445566677777766666655544
No 261
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=22.33 E-value=73 Score=28.36 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044619 61 IAIIGILASAFLLVSYYT 78 (281)
Q Consensus 61 iiii~il~~~~llv~~~~ 78 (281)
+|||++|+.+..++++.+
T Consensus 134 lIIIAVLfLICT~LfLST 151 (227)
T PF05399_consen 134 LIIIAVLFLICTLLFLST 151 (227)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566555544444433
No 262
>PF15069 FAM163: FAM163 family
Probab=22.30 E-value=4.2e+02 Score=22.09 Aligned_cols=7 Identities=57% Similarity=1.459 Sum_probs=4.4
Q ss_pred CCCCccc
Q 044619 184 HSNCPLC 190 (281)
Q Consensus 184 ~~~CP~C 190 (281)
+..||.|
T Consensus 91 ~~~CptC 97 (143)
T PF15069_consen 91 RSYCPTC 97 (143)
T ss_pred CCcCCCC
Confidence 4556777
No 263
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=22.02 E-value=39 Score=30.09 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=19.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 044619 54 PSFSPLVIAIIGILASAFLLVSYYTILSKYCGNTNSA 90 (281)
Q Consensus 54 ~~f~~lviiii~il~~~~llv~~~~i~~~~c~~~~~~ 90 (281)
..-.-.+-++|||+++++. +++.++++...++++..
T Consensus 31 ~~~~d~~~I~iaiVAG~~t-VILVI~i~v~vR~CRq~ 66 (221)
T PF08374_consen 31 SRSKDYVKIMIAIVAGIMT-VILVIFIVVLVRYCRQS 66 (221)
T ss_pred cccccceeeeeeeecchhh-hHHHHHHHHHHHHHhhc
Confidence 3344566677777665554 44445556555445434
No 264
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=22.00 E-value=46 Score=30.93 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=14.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHH
Q 044619 54 PSFSPLVIAIIGILASAFLLVSYYT 78 (281)
Q Consensus 54 ~~f~~lviiii~il~~~~llv~~~~ 78 (281)
.+|.+++++|-++++.+|+.+++|-
T Consensus 275 ~~l~piil~IG~vl~i~~Ig~~ifK 299 (305)
T PF04639_consen 275 DSLLPIILIIGGVLLIVFIGYFIFK 299 (305)
T ss_pred hhhhHHHHHHHHHHHHHHhhheeeE
Confidence 4566666666555555555555543
No 265
>PRK08389 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=21.98 E-value=2.7e+02 Score=22.03 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044619 58 PLVIAIIGILASAFLLVSYYTILSKYCGN 86 (281)
Q Consensus 58 ~lviiii~il~~~~llv~~~~i~~~~c~~ 86 (281)
+-.+++.+|.+++....+.+.++.+..++
T Consensus 72 pQalvLtaIVI~~a~~A~~Lal~i~~yr~ 100 (114)
T PRK08389 72 PQALVLTAIVIGVSTTALALSVAIKLYEK 100 (114)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555554444444444444433
No 266
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=21.86 E-value=70 Score=30.26 Aligned_cols=48 Identities=10% Similarity=-0.015 Sum_probs=33.0
Q ss_pred CCcCCCcceeeccccccCcceeecCCCCC-ccchHHHHHHHhcCCCCcccccccc
Q 044619 142 GLIEGTDCSVCLSEFEEDESLRLLPKCNH-AFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 142 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H-~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
++.....|..|-+.+-. ..+.+ |+| +|+..|-. +....+||.|-+...
T Consensus 339 ~~~s~~~~~~~~~~~~s---t~~~~-~~~n~~~~~~a~--~s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 339 GLMSSLKGTSAGFGLLS---TIWSG-GNMNLSPGSLAS--ASASPTSSTCDHNDH 387 (394)
T ss_pred cchhhcccccccCceee---eEeec-CCcccChhhhhh--cccCCccccccccce
Confidence 34455678888665433 34555 997 78888877 667779999976554
No 267
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=21.74 E-value=1.8e+02 Score=20.95 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=17.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044619 56 FSPLVIAIIGILASAFLLVSYYTILSKYCG 85 (281)
Q Consensus 56 f~~lviiii~il~~~~llv~~~~i~~~~c~ 85 (281)
+...++.+..+++..++|++++.++.+...
T Consensus 5 l~i~i~Gm~iVF~~L~lL~~~i~l~~~~~~ 34 (79)
T PF04277_consen 5 LQIMIIGMGIVFLVLILLILVISLMSKLIR 34 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666665533
No 268
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=21.64 E-value=1.5e+02 Score=28.77 Aligned_cols=11 Identities=9% Similarity=0.413 Sum_probs=5.6
Q ss_pred HHHHhcCCCcc
Q 044619 80 LSKYCGNTNSA 90 (281)
Q Consensus 80 ~~~~c~~~~~~ 90 (281)
+.++|.++.+.
T Consensus 42 ~~~CC~r~~~~ 52 (406)
T PF04906_consen 42 ICRCCCRRPRE 52 (406)
T ss_pred HHHhhCCCCCc
Confidence 33556665443
No 269
>PF05776 Papilloma_E5A: Papillomavirus E5A protein; InterPro: IPR008736 Human papillomaviruses (HPVs) are epitheliotropic viruses, and their life cycle is intimately linked to the stratification and differentiation state of the host epithelial tissues. The kinetics of E5a protein expression during the complete viral life cycle has been studied and the highest level was found to be coincidental with the onset of virion morphogenesis [].
Probab=21.52 E-value=1.7e+02 Score=22.00 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=18.8
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHH
Q 044619 50 DNSSPSFSPLVIAIIGILASAFLLVSY 76 (281)
Q Consensus 50 ~~s~~~f~~lviiii~il~~~~llv~~ 76 (281)
..-+....|++|++.+.++++++++++
T Consensus 11 ~tTs~siLP~vIA~~VC~vSIilii~i 37 (91)
T PF05776_consen 11 GTTSTSILPVVIALTVCFVSIILIIFI 37 (91)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888887777777766655
No 270
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=21.34 E-value=43 Score=23.68 Aligned_cols=13 Identities=31% Similarity=0.945 Sum_probs=10.1
Q ss_pred CCCCccccccccc
Q 044619 184 HSNCPLCRANLFL 196 (281)
Q Consensus 184 ~~~CP~CR~~l~~ 196 (281)
...||+|..++..
T Consensus 39 ~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 39 EPVCPLCKSPMVS 51 (59)
T ss_pred CccCCCcCCcccc
Confidence 4579999988754
No 271
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=20.93 E-value=16 Score=33.92 Aligned_cols=37 Identities=24% Similarity=0.547 Sum_probs=25.5
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHhcCC
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS 185 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~ 185 (281)
.|.+|+++|..+.....+. |.-+||..|+..|+....
T Consensus 216 vC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ecHHHHHHHhcccccchhh-cccccccccccccccccc
Confidence 7888888887654444443 555888888888865443
No 272
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=20.91 E-value=1.5e+02 Score=25.20 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 044619 58 PLVIAIIGILASAFLLVSYYTIL 80 (281)
Q Consensus 58 ~lviiii~il~~~~llv~~~~i~ 80 (281)
.+..+++|++..++..+.|++++
T Consensus 9 ~~~~i~iGl~~f~iYyfvF~flI 31 (161)
T PRK09702 9 MLTQIAIGLCFTLLYFVVFRTLI 31 (161)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 44555566555444444444444
No 273
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=20.90 E-value=1e+02 Score=28.43 Aligned_cols=44 Identities=20% Similarity=0.412 Sum_probs=27.2
Q ss_pred CCCcceeeccccccCccee-ecCCCCCccchHHHHHHH-hcCCCCc
Q 044619 145 EGTDCSVCLSEFEEDESLR-LLPKCNHAFHVACVDRWL-KSHSNCP 188 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~-~lp~C~H~Fh~~Ci~~Wl-~~~~~CP 188 (281)
....|.||++.--.+..-. +|-+=.=.=|++|+.+|- ..+..||
T Consensus 29 tLsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 29 TLSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred ceeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 3568999998765543211 111011135899999994 6677888
No 274
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=20.86 E-value=1e+02 Score=24.03 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 044619 57 SPLVIAIIGILASAFLLVSYYTIL 80 (281)
Q Consensus 57 ~~lviiii~il~~~~llv~~~~i~ 80 (281)
.|+++++++..+...++..+..+.
T Consensus 59 ~PLilvil~s~v~G~Li~~~~~~~ 82 (98)
T COG5416 59 LPLILVILGAAVVGALIAMFAGIA 82 (98)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHH
Confidence 345555555544444444444443
No 275
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.86 E-value=1.1e+02 Score=21.51 Aligned_cols=35 Identities=11% Similarity=0.277 Sum_probs=24.8
Q ss_pred CCCcceeecccccc--CcceeecCCCCCccchHHHHH
Q 044619 145 EGTDCSVCLSEFEE--DESLRLLPKCNHAFHVACVDR 179 (281)
Q Consensus 145 ~~~~C~ICl~~~~~--~~~~~~lp~C~H~Fh~~Ci~~ 179 (281)
....|+.|-..... ...+...+.||+.+|.+---.
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHHHHH
Confidence 45689999888776 445566667888888775433
No 276
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=20.76 E-value=1.5e+02 Score=25.27 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044619 60 VIAIIGILASAFLLVSYYTILSK 82 (281)
Q Consensus 60 viiii~il~~~~llv~~~~i~~~ 82 (281)
+++++++.+.+++.+++-++..|
T Consensus 98 ~~Vl~g~s~l~i~yfvir~~R~r 120 (163)
T PF06679_consen 98 LYVLVGLSALAILYFVIRTFRLR 120 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 55556555555555555555443
No 277
>PRK11827 hypothetical protein; Provisional
Probab=20.63 E-value=33 Score=24.31 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=15.9
Q ss_pred HHHHhcCCCCcccccccccC
Q 044619 178 DRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 178 ~~Wl~~~~~CP~CR~~l~~~ 197 (281)
++||..--.||.|+.++...
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 46777778899999998653
No 278
>PF08091 Toxin_21: Spider insecticidal peptide; InterPro: IPR012626 This family consists of insecticidal peptides isolated from venom of spiders of Aptostichus schlingeri (Trap-door spider) and Calisoga sp. Nine insecticidal peptides were isolated from the venom of the A. schlinger spider and seven of these toxins cause flaccid paralysis to insect larvae within 10 min of injection. However, all nine peptides were lethal within 24 hours [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=20.58 E-value=64 Score=20.59 Aligned_cols=21 Identities=52% Similarity=1.113 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCcccccCCCc-eeee
Q 044619 13 PYVNSKDCSEGFCSLYCPQW-CYII 36 (281)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~-~~~~ 36 (281)
|-.|++||..|-|+. -| ||+.
T Consensus 7 PC~ns~dCC~g~C~~---fWtC~~~ 28 (39)
T PF08091_consen 7 PCSNSKDCCSGNCGY---FWTCQIR 28 (39)
T ss_pred cCCCchhhccCCccc---eEEEEEc
Confidence 788999996666654 24 7764
No 279
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=20.54 E-value=1.5e+02 Score=22.04 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 044619 60 VIAIIGILASAFLLVS 75 (281)
Q Consensus 60 viiii~il~~~~llv~ 75 (281)
.+.++|..+.+++|++
T Consensus 9 ~l~v~GM~~VF~fL~l 24 (82)
T TIGR01195 9 TLTVLGMGIVFLFLSL 24 (82)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555444444333
No 280
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=20.43 E-value=84 Score=30.67 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044619 61 IAIIGILASAFLLVSYY 77 (281)
Q Consensus 61 iiii~il~~~~llv~~~ 77 (281)
+||+++|+.+++|+++.
T Consensus 387 ~i~~avl~p~~il~~~~ 403 (436)
T PTZ00208 387 MIILAVLVPAIILAIIA 403 (436)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666665443
No 281
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=20.40 E-value=49 Score=37.43 Aligned_cols=50 Identities=28% Similarity=0.530 Sum_probs=39.9
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc----CCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----HSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~~l~ 195 (281)
....|-+|+...+....+.... |.-.||..|++.-+.. ...||-||..-.
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~-c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDE-CLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHh-hhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 4568999999988866665554 8999999999998865 347999988763
No 282
>PF15179 Myc_target_1: Myc target protein 1
Probab=20.36 E-value=2.2e+02 Score=24.82 Aligned_cols=21 Identities=5% Similarity=0.083 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044619 62 AIIGILASAFLLVSYYTILSK 82 (281)
Q Consensus 62 iii~il~~~~llv~~~~i~~~ 82 (281)
+.+++++++++-.++++++..
T Consensus 25 F~vSm~iGLviG~li~~Lltw 45 (197)
T PF15179_consen 25 FCVSMAIGLVIGALIWALLTW 45 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555554444444555543
No 283
>PHA03291 envelope glycoprotein I; Provisional
Probab=20.33 E-value=63 Score=30.98 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCc
Q 044619 67 LASAFLLVSYYTILSKYCGNTNS 89 (281)
Q Consensus 67 l~~~~llv~~~~i~~~~c~~~~~ 89 (281)
|++.++|-+..+++.|+|+|+++
T Consensus 297 ii~cV~lGSC~Ccl~R~~rRr~r 319 (401)
T PHA03291 297 IIACVFLGSCACCLHRRCRRRRR 319 (401)
T ss_pred HHHHhhhhhhhhhhhhhhhcccC
Confidence 33334444456666666666544
No 284
>PF02977 CarbpepA_inh: Carboxypeptidase A inhibitor; InterPro: IPR004231 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family is represented by the well-characterised metallocarboxypeptidase A inhibitor (MCPI) from potatoes, which belongs to the MEROPS inhibitor family I37, clan IE. It inhibits metallopeptidases belonging to MEROPS peptidase family M14, carboxypeptidase A. In Russet Burbank potatoes, it is a mixture of approximately equal amounts of two polypeptide chains containing 38 or 39 amino acid residues. The chains differ in their amino terminal sequence only [] and are resistant to fragmentation by proteases []. The structure of the complex between bovine carboxypeptidase A and the 39-amino-acid carboxypeptidase A inhibitor from potatoes has been determined at 2.5-A resolution []. The potato inhibitor is synthesised as a precursor, having a 29 residue N-terminal signal peptide, a 27 residue pro-peptide, the 39 residue mature inhibitor region and a 7 residue C-terminal extension. The 7 residue C-terminal extension is involved in inhibitor inactivation and may be required for targeting to the vacuole where the mature active inhibitor accumulates []. The N-terminal region and the mature inhibitor are weakly related to other solananaceous proteins found in this entry, from potato, tomato and henbane, which have been incorrectly described as metallocarboxipeptidase inhibitors [].; GO: 0008191 metalloendopeptidase inhibitor activity; PDB: 4CPA_I 1H20_A 2HLG_A.
Probab=20.29 E-value=69 Score=21.43 Aligned_cols=19 Identities=37% Similarity=0.973 Sum_probs=12.2
Q ss_pred CCCCCCCCCCC-cccccCCCceeee
Q 044619 13 PYVNSKDCSEG-FCSLYCPQWCYII 36 (281)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~~~~~~~~ 36 (281)
|=++.-||+-+ +| |||+-+
T Consensus 11 ~C~t~sDC~g~tlC-----~~C~k~ 30 (46)
T PF02977_consen 11 YCNTNSDCSGITLC-----QWCWKL 30 (46)
T ss_dssp B-SSSCCCTTSSSS------EE-CC
T ss_pred ccccCccccceeeh-----HHHHhc
Confidence 44567899888 77 899865
No 285
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=20.10 E-value=1.3e+02 Score=24.41 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=5.2
Q ss_pred CchhHHHHHHHHH
Q 044619 55 SFSPLVIAIIGIL 67 (281)
Q Consensus 55 ~f~~lviiii~il 67 (281)
+++.+++.+++++
T Consensus 36 NysiL~Ls~vvlv 48 (125)
T PF15048_consen 36 NYSILALSFVVLV 48 (125)
T ss_pred chHHHHHHHHHHH
Confidence 3444444333333
No 286
>PHA02831 EEV host range protein; Provisional
Probab=20.09 E-value=1.8e+02 Score=26.71 Aligned_cols=14 Identities=29% Similarity=0.686 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 044619 60 VIAIIGILASAFLL 73 (281)
Q Consensus 60 viiii~il~~~~ll 73 (281)
+|++++|+..+|+|
T Consensus 233 ~~~~~~~~~~~~~~ 246 (268)
T PHA02831 233 IIILLSIICFIFVL 246 (268)
T ss_pred ehhHHHHHHHHHHH
Confidence 33344444433333
Done!