Query 044619
Match_columns 281
No_of_seqs 292 out of 1841
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 08:29:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 5.3E-17 1.8E-21 123.6 7.7 79 117-196 10-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 2.1E-17 7.1E-22 121.1 2.0 69 128-197 5-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 3.1E-15 1.1E-19 102.7 3.4 51 145-195 4-54 (55)
4 2ep4_A Ring finger protein 24; 99.5 1.2E-14 4.2E-19 105.7 6.2 54 144-198 13-66 (74)
5 2ect_A Ring finger protein 126 99.5 1.5E-14 5.2E-19 106.3 5.8 56 144-200 13-68 (78)
6 2kiz_A E3 ubiquitin-protein li 99.5 1.7E-14 5.8E-19 103.6 5.6 53 144-197 12-64 (69)
7 2ecl_A Ring-box protein 2; RNF 99.5 1.6E-14 5.3E-19 107.7 3.2 52 145-196 14-76 (81)
8 2ecm_A Ring finger and CHY zin 99.4 2E-13 7E-18 93.3 4.1 50 145-195 4-54 (55)
9 1v87_A Deltex protein 2; ring- 99.4 3.8E-13 1.3E-17 105.8 5.2 51 146-197 25-95 (114)
10 3dpl_R Ring-box protein 1; ubi 99.4 2.9E-13 9.9E-18 106.1 4.3 50 145-195 36-100 (106)
11 2ea6_A Ring finger protein 4; 99.4 3.3E-13 1.1E-17 96.2 3.7 51 144-195 13-67 (69)
12 3ng2_A RNF4, snurf, ring finge 99.4 3.5E-13 1.2E-17 96.8 3.9 52 145-197 9-64 (71)
13 2xeu_A Ring finger protein 4; 99.3 4.6E-13 1.6E-17 94.1 2.9 51 145-196 2-56 (64)
14 2ecn_A Ring finger protein 141 99.3 5.8E-13 2E-17 95.7 3.0 51 143-198 12-62 (70)
15 1chc_A Equine herpes virus-1 r 99.3 2.1E-12 7.1E-17 92.2 5.3 50 145-197 4-53 (68)
16 2d8s_A Cellular modulator of i 99.3 2.2E-12 7.7E-17 96.0 5.4 52 145-198 14-72 (80)
17 2djb_A Polycomb group ring fin 99.3 3.8E-12 1.3E-16 92.1 5.4 52 143-197 12-63 (72)
18 4a0k_B E3 ubiquitin-protein li 99.3 6.1E-13 2.1E-17 106.0 0.3 51 145-195 47-111 (117)
19 2ct2_A Tripartite motif protei 99.2 9.3E-12 3.2E-16 92.9 6.4 54 143-197 12-69 (88)
20 2d8t_A Dactylidin, ring finger 99.2 2.4E-12 8.3E-17 92.9 2.7 49 144-196 13-61 (71)
21 2yur_A Retinoblastoma-binding 99.2 1.3E-11 4.4E-16 89.9 5.3 52 143-197 12-65 (74)
22 2csy_A Zinc finger protein 183 99.2 1.3E-11 4.4E-16 91.2 4.5 47 145-195 14-60 (81)
23 2ct0_A Non-SMC element 1 homol 99.2 2.4E-11 8.2E-16 89.0 5.3 50 145-197 14-65 (74)
24 2ecy_A TNF receptor-associated 99.2 1.7E-11 5.7E-16 87.1 3.8 49 144-196 13-62 (66)
25 2ysl_A Tripartite motif-contai 99.1 2.3E-11 7.8E-16 87.8 4.2 50 143-196 17-69 (73)
26 4ayc_A E3 ubiquitin-protein li 99.1 1.4E-11 4.8E-16 100.3 2.5 47 146-196 53-99 (138)
27 4ap4_A E3 ubiquitin ligase RNF 99.1 2.7E-11 9.2E-16 96.7 2.9 52 145-197 6-61 (133)
28 3lrq_A E3 ubiquitin-protein li 99.1 2.3E-11 7.8E-16 93.8 2.4 48 145-195 21-69 (100)
29 1t1h_A Gspef-atpub14, armadill 99.1 5.1E-11 1.8E-15 87.2 4.1 49 144-196 6-55 (78)
30 2ecw_A Tripartite motif-contai 99.1 7.6E-11 2.6E-15 87.0 4.9 49 144-196 17-71 (85)
31 2ecv_A Tripartite motif-contai 99.1 1.3E-10 4.5E-15 85.7 6.1 49 144-196 17-71 (85)
32 1g25_A CDK-activating kinase a 99.1 6.8E-11 2.3E-15 83.7 3.6 50 146-196 3-55 (65)
33 2ysj_A Tripartite motif-contai 99.1 1.1E-10 3.6E-15 82.1 4.6 44 143-190 17-63 (63)
34 2egp_A Tripartite motif-contai 99.0 2.9E-11 1E-15 88.4 0.6 50 143-196 9-65 (79)
35 3ztg_A E3 ubiquitin-protein li 99.0 1.8E-10 6E-15 86.9 4.9 50 143-195 10-61 (92)
36 2y43_A E3 ubiquitin-protein li 99.0 9.1E-11 3.1E-15 89.9 3.3 49 145-196 21-69 (99)
37 4ap4_A E3 ubiquitin ligase RNF 99.0 9.5E-11 3.3E-15 93.4 3.3 52 145-197 71-126 (133)
38 2ecj_A Tripartite motif-contai 99.0 1.5E-10 5E-15 79.7 3.6 43 144-190 13-58 (58)
39 2ckl_A Polycomb group ring fin 99.0 1E-10 3.5E-15 91.1 3.0 49 145-196 14-62 (108)
40 3fl2_A E3 ubiquitin-protein li 99.0 1.9E-10 6.6E-15 91.7 3.5 48 145-196 51-99 (124)
41 2ckl_B Ubiquitin ligase protei 99.0 3.6E-10 1.2E-14 94.5 5.2 72 122-196 23-102 (165)
42 1jm7_A BRCA1, breast cancer ty 98.9 4.2E-10 1.5E-14 87.6 4.1 47 146-196 21-70 (112)
43 3hct_A TNF receptor-associated 98.9 3.4E-10 1.2E-14 89.6 3.2 50 143-196 15-65 (118)
44 1z6u_A NP95-like ring finger p 98.9 8.5E-10 2.9E-14 91.3 3.6 48 145-196 77-125 (150)
45 1rmd_A RAG1; V(D)J recombinati 98.9 1.1E-09 3.6E-14 86.3 3.3 47 146-196 23-70 (116)
46 3l11_A E3 ubiquitin-protein li 98.8 3.8E-10 1.3E-14 88.7 0.2 48 145-196 14-62 (115)
47 2kr4_A Ubiquitin conjugation f 98.8 2.4E-09 8.1E-14 80.2 3.9 47 145-195 13-59 (85)
48 1e4u_A Transcriptional repress 98.8 6.1E-09 2.1E-13 76.8 5.6 54 144-198 9-64 (78)
49 1bor_A Transcription factor PM 98.8 1.7E-09 5.8E-14 74.5 2.4 46 145-197 5-50 (56)
50 2vje_A E3 ubiquitin-protein li 98.8 1.6E-09 5.5E-14 76.8 2.3 49 145-196 7-57 (64)
51 3k1l_B Fancl; UBC, ring, RWD, 98.8 1.7E-09 5.9E-14 100.0 2.5 53 145-197 307-374 (381)
52 2kre_A Ubiquitin conjugation f 98.8 3.9E-09 1.3E-13 81.5 3.5 47 145-195 28-74 (100)
53 2vje_B MDM4 protein; proto-onc 98.7 3.1E-09 1E-13 75.1 2.2 50 145-196 6-56 (63)
54 3knv_A TNF receptor-associated 98.7 1.8E-09 6E-14 88.5 0.9 47 145-195 30-77 (141)
55 2y1n_A E3 ubiquitin-protein li 98.7 4.4E-09 1.5E-13 99.2 3.7 48 146-197 332-380 (389)
56 1wgm_A Ubiquitin conjugation f 98.7 6.1E-09 2.1E-13 80.1 3.7 47 145-195 21-68 (98)
57 1jm7_B BARD1, BRCA1-associated 98.7 2.8E-09 9.5E-14 84.2 1.4 45 145-195 21-66 (117)
58 4ic3_A E3 ubiquitin-protein li 98.6 4.7E-09 1.6E-13 76.4 0.4 45 145-197 23-68 (74)
59 3hcs_A TNF receptor-associated 98.6 1.4E-08 4.9E-13 85.0 3.1 50 143-196 15-65 (170)
60 2yu4_A E3 SUMO-protein ligase 98.6 1.7E-08 5.9E-13 76.7 3.0 47 144-193 5-59 (94)
61 1vyx_A ORF K3, K3RING; zinc-bi 98.5 5.5E-08 1.9E-12 68.1 3.5 47 145-195 5-58 (60)
62 2c2l_A CHIP, carboxy terminus 98.5 4.1E-08 1.4E-12 87.4 3.3 47 145-195 207-254 (281)
63 1wim_A KIAA0161 protein; ring 98.5 3.9E-08 1.3E-12 74.5 2.6 48 145-193 4-61 (94)
64 2ecg_A Baculoviral IAP repeat- 98.4 1.1E-07 3.8E-12 69.1 3.3 44 146-197 25-69 (75)
65 2ea5_A Cell growth regulator w 98.4 2.5E-07 8.5E-12 66.2 4.3 45 145-197 14-59 (68)
66 2f42_A STIP1 homology and U-bo 98.3 2.6E-07 9E-12 78.5 4.0 51 142-196 102-153 (179)
67 2yho_A E3 ubiquitin-protein li 98.3 1E-07 3.5E-12 70.3 0.5 44 146-197 18-62 (79)
68 2bay_A PRE-mRNA splicing facto 98.2 5.9E-07 2E-11 63.0 1.9 48 147-197 4-51 (61)
69 3t6p_A Baculoviral IAP repeat- 98.1 5.5E-07 1.9E-11 83.9 0.5 45 145-197 294-339 (345)
70 3htk_C E3 SUMO-protein ligase 98.1 1.5E-06 5E-11 77.8 2.7 48 145-195 180-231 (267)
71 3vk6_A E3 ubiquitin-protein li 98.0 3.6E-06 1.2E-10 64.3 2.9 49 148-199 3-52 (101)
72 3nw0_A Non-structural maintena 97.9 9.1E-06 3.1E-10 72.0 4.9 49 146-197 180-230 (238)
73 2ko5_A Ring finger protein Z; 94.8 0.028 9.6E-07 42.2 4.1 60 142-207 24-84 (99)
74 2lri_C Autoimmune regulator; Z 92.7 0.064 2.2E-06 37.7 2.6 46 145-194 11-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 92.5 0.061 2.1E-06 40.2 2.4 35 145-180 2-36 (101)
76 2klu_A T-cell surface glycopro 88.8 0.43 1.5E-05 33.4 3.7 18 62-79 12-29 (70)
77 1wil_A KIAA1045 protein; ring 87.4 0.43 1.5E-05 35.1 3.2 36 143-180 12-47 (89)
78 2l5u_A Chromodomain-helicase-D 84.9 0.42 1.5E-05 32.7 2.0 45 145-193 10-58 (61)
79 2knc_A Integrin alpha-IIB; tra 84.7 1.9 6.7E-05 28.9 5.1 27 57-83 10-36 (54)
80 1we9_A PHD finger family prote 84.0 0.29 1E-05 33.6 0.8 49 145-193 5-58 (64)
81 2jwa_A Receptor tyrosine-prote 82.8 3.8 0.00013 26.3 5.7 12 56-67 11-22 (44)
82 2l8s_A Integrin alpha-1; trans 82.5 2.1 7.3E-05 28.7 4.6 27 57-83 7-33 (54)
83 2k16_A Transcription initiatio 82.1 0.23 7.8E-06 35.3 -0.4 50 145-195 17-70 (75)
84 2l2t_A Receptor tyrosine-prote 81.2 4 0.00014 26.2 5.3 22 54-75 7-28 (44)
85 3lqh_A Histone-lysine N-methyl 80.6 0.54 1.9E-05 39.5 1.3 48 146-193 2-63 (183)
86 1wev_A Riken cDNA 1110020M19; 80.3 0.37 1.3E-05 35.6 0.2 55 146-200 16-79 (88)
87 3u5n_A E3 ubiquitin-protein li 78.9 0.37 1.3E-05 41.0 -0.2 46 145-194 6-55 (207)
88 1mm2_A MI2-beta; PHD, zinc fin 78.7 0.34 1.2E-05 33.2 -0.4 46 145-194 8-57 (61)
89 1f62_A Transcription factor WS 78.5 0.63 2.2E-05 30.4 0.9 44 148-192 2-49 (51)
90 2k1a_A Integrin alpha-IIB; sin 78.2 5.2 0.00018 25.4 5.1 27 57-83 8-34 (42)
91 3o36_A Transcription intermedi 78.1 0.37 1.3E-05 40.2 -0.5 46 145-194 3-52 (184)
92 2ysm_A Myeloid/lymphoid or mix 77.3 0.59 2E-05 35.7 0.5 46 145-191 6-55 (111)
93 2ks1_B Epidermal growth factor 75.0 5 0.00017 25.7 4.4 7 59-65 13-19 (44)
94 2lv9_A Histone-lysine N-methyl 74.8 0.89 3.1E-05 34.1 0.9 44 146-191 28-74 (98)
95 2klu_A T-cell surface glycopro 74.5 3.4 0.00012 28.8 3.7 34 62-95 9-42 (70)
96 2yql_A PHD finger protein 21A; 72.4 0.44 1.5E-05 31.9 -1.2 44 145-192 8-55 (56)
97 1wep_A PHF8; structural genomi 70.8 2.6 9E-05 30.1 2.6 48 145-194 11-64 (79)
98 2l2t_A Receptor tyrosine-prote 70.4 7.2 0.00025 25.0 4.3 27 60-86 10-36 (44)
99 3v43_A Histone acetyltransfera 70.3 4.3 0.00015 30.9 3.9 46 146-191 5-62 (112)
100 3v43_A Histone acetyltransfera 70.2 0.89 3.1E-05 34.8 -0.0 45 148-192 63-111 (112)
101 2puy_A PHD finger protein 21A; 70.1 0.45 1.5E-05 32.3 -1.6 47 145-195 4-54 (60)
102 2lbm_A Transcriptional regulat 70.0 4.1 0.00014 32.7 3.9 43 145-191 62-115 (142)
103 2ku3_A Bromodomain-containing 69.8 1.4 4.7E-05 31.2 0.9 49 145-193 15-66 (71)
104 2cs3_A Protein C14ORF4, MY039 69.5 4.9 0.00017 29.2 3.7 48 146-193 15-67 (93)
105 2knc_B Integrin beta-3; transm 68.4 5 0.00017 28.9 3.7 22 62-83 13-34 (79)
106 1xwh_A Autoimmune regulator; P 68.4 0.64 2.2E-05 32.2 -1.1 44 145-192 7-54 (66)
107 1weo_A Cellulose synthase, cat 67.8 20 0.00069 26.4 6.8 52 145-196 15-70 (93)
108 2e6r_A Jumonji/ARID domain-con 67.7 0.64 2.2E-05 34.6 -1.3 49 144-193 14-66 (92)
109 2ks1_B Epidermal growth factor 67.4 5 0.00017 25.7 3.1 8 55-62 12-19 (44)
110 3o70_A PHD finger protein 13; 67.3 0.98 3.4E-05 31.6 -0.3 48 143-192 16-66 (68)
111 2ri7_A Nucleosome-remodeling f 67.1 1.3 4.3E-05 36.4 0.3 48 145-193 7-59 (174)
112 2l43_A N-teminal domain from h 66.1 1.7 5.9E-05 31.9 0.8 50 145-194 24-76 (88)
113 1fp0_A KAP-1 corepressor; PHD 65.8 2.9 9.9E-05 30.9 2.0 45 145-193 24-72 (88)
114 1wem_A Death associated transc 65.4 2.3 7.9E-05 30.0 1.4 47 146-194 16-71 (76)
115 2kgg_A Histone demethylase jar 64.5 2.1 7E-05 28.1 0.9 44 148-191 4-52 (52)
116 2k9j_B Integrin beta-3; transm 64.3 12 0.00039 23.8 4.4 26 60-85 10-35 (43)
117 2kwj_A Zinc finger protein DPF 63.9 4.6 0.00016 30.9 2.9 45 147-191 2-59 (114)
118 3ql9_A Transcriptional regulat 62.1 7.3 0.00025 30.7 3.8 44 145-192 56-110 (129)
119 2vpb_A Hpygo1, pygopus homolog 61.9 5.1 0.00017 27.7 2.5 33 146-178 8-41 (65)
120 2ro1_A Transcription intermedi 61.2 1.4 4.9E-05 36.9 -0.5 44 146-193 2-49 (189)
121 2yt5_A Metal-response element- 60.3 4.5 0.00015 27.5 2.1 50 145-194 5-62 (66)
122 1wew_A DNA-binding family prot 60.1 2.3 8E-05 30.3 0.5 49 145-194 15-73 (78)
123 4gne_A Histone-lysine N-methyl 60.0 4.7 0.00016 30.8 2.3 48 143-196 12-65 (107)
124 1weu_A Inhibitor of growth fam 59.4 3.7 0.00013 30.5 1.5 45 145-194 35-86 (91)
125 3m62_A Ubiquitin conjugation f 58.6 5.3 0.00018 41.6 3.1 48 145-196 890-938 (968)
126 2jwa_A Receptor tyrosine-prote 55.4 14 0.00048 23.6 3.6 20 57-77 9-28 (44)
127 2k1k_A Ephrin type-A receptor 54.9 18 0.00061 22.2 3.9 22 58-79 12-33 (38)
128 3shb_A E3 ubiquitin-protein li 53.0 1.6 5.4E-05 31.4 -1.4 44 148-192 28-76 (77)
129 2e6s_A E3 ubiquitin-protein li 51.9 2.3 7.7E-05 30.5 -0.7 44 148-192 28-76 (77)
130 1wen_A Inhibitor of growth fam 51.3 6.5 0.00022 27.6 1.7 45 145-194 15-66 (71)
131 2knc_B Integrin beta-3; transm 51.2 18 0.00062 25.9 4.1 30 57-86 11-41 (79)
132 3asl_A E3 ubiquitin-protein li 51.0 2.3 8E-05 29.8 -0.7 44 148-192 20-68 (70)
133 2xb1_A Pygopus homolog 2, B-ce 49.2 6.9 0.00024 29.5 1.6 49 146-194 3-62 (105)
134 2k9y_A Ephrin type-A receptor 47.9 13 0.00045 22.8 2.5 12 63-74 16-27 (41)
135 1afo_A Glycophorin A; integral 47.4 48 0.0016 20.5 5.0 22 58-79 11-32 (40)
136 2wwb_C SEC61BETA, protein tran 46.7 14 0.00046 27.7 2.8 27 46-72 58-84 (96)
137 1wee_A PHD finger family prote 46.7 2.4 8.4E-05 29.6 -1.2 48 146-194 16-67 (72)
138 1rh5_C Secbeta; protein transl 45.6 27 0.00094 23.1 4.0 30 46-75 18-47 (53)
139 3ask_A E3 ubiquitin-protein li 45.2 4.2 0.00014 35.2 -0.2 44 148-192 176-224 (226)
140 3t7l_A Zinc finger FYVE domain 45.1 12 0.00041 27.3 2.3 36 145-180 19-54 (90)
141 1joc_A EEA1, early endosomal a 44.8 11 0.00039 29.2 2.3 35 145-179 68-102 (125)
142 3j1r_A Archaeal adhesion filam 43.6 42 0.0014 18.8 3.8 14 58-71 3-16 (26)
143 1wfk_A Zinc finger, FYVE domai 43.2 14 0.00049 26.8 2.5 35 145-179 8-42 (88)
144 2jo1_A Phospholemman; FXYD1, N 42.8 18 0.00061 25.4 2.8 20 67-86 23-42 (72)
145 1zbd_B Rabphilin-3A; G protein 42.3 13 0.00045 29.4 2.3 33 145-177 54-87 (134)
146 1y02_A CARP2, FYVE-ring finger 41.3 3.7 0.00013 32.0 -1.1 49 146-194 19-67 (120)
147 3fyb_A Protein of unknown func 40.9 11 0.00037 28.4 1.5 11 172-182 42-52 (104)
148 2o35_A Hypothetical protein DU 40.9 11 0.00037 28.4 1.5 11 172-182 43-53 (105)
149 2zxe_G FXYD10, phospholemman-l 40.7 9.1 0.00031 27.2 1.0 21 67-87 26-46 (74)
150 2yw8_A RUN and FYVE domain-con 40.6 15 0.00051 26.2 2.2 35 145-179 18-52 (82)
151 2jp3_A FXYD domain-containing 40.6 12 0.00042 26.0 1.7 20 68-87 25-44 (67)
152 1z2q_A LM5-1; membrane protein 40.3 16 0.00054 26.2 2.3 36 145-180 20-55 (84)
153 1vfy_A Phosphatidylinositol-3- 40.0 18 0.00061 25.2 2.5 33 146-178 11-43 (73)
154 2k1k_A Ephrin type-A receptor 39.2 47 0.0016 20.3 4.0 28 60-87 10-37 (38)
155 2ysm_A Myeloid/lymphoid or mix 39.0 3.5 0.00012 31.2 -1.5 45 148-193 56-104 (111)
156 2kwj_A Zinc finger protein DPF 38.7 2.3 8E-05 32.6 -2.6 46 148-194 60-109 (114)
157 2vnf_A ING 4, P29ING4, inhibit 38.5 4.5 0.00015 27.3 -0.8 42 146-192 10-58 (60)
158 1dvp_A HRS, hepatocyte growth 37.4 18 0.00061 30.6 2.6 36 144-179 159-194 (220)
159 1x4u_A Zinc finger, FYVE domai 37.0 19 0.00067 25.7 2.4 33 145-177 13-45 (84)
160 2ww9_C Protein transport prote 36.7 20 0.00069 26.3 2.4 36 46-83 49-84 (87)
161 3zyq_A Hepatocyte growth facto 36.6 19 0.00066 30.6 2.7 37 144-180 162-198 (226)
162 2g6q_A Inhibitor of growth pro 36.5 5.3 0.00018 27.3 -0.8 45 145-192 10-59 (62)
163 3c6w_A P28ING5, inhibitor of g 35.0 5.7 0.0002 26.8 -0.8 43 145-192 8-57 (59)
164 1zfo_A LAsp-1; LIM domain, zin 34.2 15 0.0005 21.3 1.1 28 147-177 4-31 (31)
165 2d8v_A Zinc finger FYVE domain 32.6 26 0.00088 24.4 2.2 31 145-180 7-38 (67)
166 1pi7_A VPU protein, U ORF prot 31.4 51 0.0018 20.0 3.2 19 62-80 7-25 (36)
167 3mpx_A FYVE, rhogef and PH dom 31.1 10 0.00035 35.0 0.0 50 145-194 374-430 (434)
168 3f6q_B LIM and senescent cell 30.1 22 0.00075 23.6 1.6 41 146-196 11-51 (72)
169 3a1b_A DNA (cytosine-5)-methyl 30.0 35 0.0012 27.8 3.0 43 145-191 78-132 (159)
170 1iij_A ERBB-2 receptor protein 29.8 25 0.00084 21.3 1.5 8 58-65 9-16 (35)
171 3o7a_A PHD finger protein 13 v 28.9 7.7 0.00026 25.2 -0.9 41 151-192 8-51 (52)
172 1wyh_A SLIM 2, skeletal muscle 28.9 49 0.0017 22.0 3.3 40 146-195 5-44 (72)
173 3arc_M Photosystem II reaction 28.5 96 0.0033 18.8 4.0 23 56-78 5-27 (36)
174 2co8_A NEDD9 interacting prote 28.4 50 0.0017 22.9 3.4 41 145-196 14-54 (82)
175 1sop_A Mini-collagen; collagen 28.2 18 0.00062 20.2 0.7 10 25-34 11-20 (26)
176 1x61_A Thyroid receptor intera 28.2 46 0.0016 22.2 3.1 40 146-195 5-44 (72)
177 1g47_A Pinch protein; LIM doma 27.7 49 0.0017 22.3 3.2 42 145-196 10-51 (77)
178 2pv0_B DNA (cytosine-5)-methyl 27.2 45 0.0015 31.0 3.6 44 145-192 92-147 (386)
179 1x4k_A Skeletal muscle LIM-pro 27.2 49 0.0017 22.0 3.0 40 146-195 5-44 (72)
180 1z60_A TFIIH basal transcripti 26.8 21 0.00072 24.2 1.0 42 147-190 16-58 (59)
181 3i2d_A E3 SUMO-protein ligase 25.5 58 0.002 30.1 4.0 46 147-195 250-299 (371)
182 1iml_A CRIP, cysteine rich int 25.0 27 0.00091 23.8 1.3 35 149-194 3-37 (76)
183 1x63_A Skeletal muscle LIM-pro 24.5 55 0.0019 22.4 3.0 40 146-195 15-54 (82)
184 2cu8_A Cysteine-rich protein 2 24.5 41 0.0014 22.8 2.3 39 146-195 9-47 (76)
185 4fo9_A E3 SUMO-protein ligase 24.2 63 0.0022 29.7 4.0 46 147-195 216-265 (360)
186 1jb0_I Photosystem 1 reaction 23.9 1.3E+02 0.0045 18.4 4.1 28 53-80 7-34 (38)
187 2gmg_A Hypothetical protein PF 23.7 11 0.00039 28.6 -0.9 24 167-195 72-95 (105)
188 2dj7_A Actin-binding LIM prote 23.4 61 0.0021 22.4 3.0 40 145-195 14-53 (80)
189 2pk7_A Uncharacterized protein 23.1 16 0.00055 25.5 -0.2 19 178-196 2-20 (69)
190 1x4l_A Skeletal muscle LIM-pro 22.2 60 0.0021 21.6 2.7 40 146-195 5-46 (72)
191 2jmo_A Parkin; IBR, E3 ligase, 21.6 7.9 0.00027 27.6 -2.1 19 167-187 55-73 (80)
192 3mjh_B Early endosome antigen 20.9 28 0.00094 20.9 0.6 10 186-195 7-16 (34)
193 1q90_G Cytochrome B6F complex 20.8 1.2E+02 0.0042 18.4 3.5 22 65-86 8-29 (37)
194 2l3k_A Rhombotin-2, linker, LI 20.6 46 0.0016 25.0 2.0 37 148-194 10-46 (123)
195 2kpi_A Uncharacterized protein 20.4 55 0.0019 21.6 2.1 17 143-159 7-23 (56)
196 3kv5_D JMJC domain-containing 20.2 20 0.00068 34.4 -0.3 47 146-194 37-89 (488)
197 2d8x_A Protein pinch; LIM doma 20.1 60 0.0021 21.5 2.3 39 146-196 5-43 (70)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.68 E-value=5.3e-17 Score=123.62 Aligned_cols=79 Identities=27% Similarity=0.585 Sum_probs=68.9
Q ss_pred CcCCCCCCCHHHHhhcceeeeecCCC-CcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 117 WHVPTRGLDEVLIKSITVCKYKKGDG-LIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 117 ~~~~~~~l~~~~i~~lp~~~~~~~~~-~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
.....++++++.|++||...+..... ..+...|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||+.+.
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 34557899999999999999887553 335678999999999998889998 9999999999999999999999999885
Q ss_pred c
Q 044619 196 L 196 (281)
Q Consensus 196 ~ 196 (281)
.
T Consensus 89 ~ 89 (91)
T 2l0b_A 89 P 89 (91)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-17 Score=121.08 Aligned_cols=69 Identities=39% Similarity=0.861 Sum_probs=60.8
Q ss_pred HHhhcceeeeecCCCCcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccC
Q 044619 128 LIKSITVCKYKKGDGLIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 128 ~i~~lp~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
.++.||..+++..+...+...|+||++.|..++.++.++ |+|.||..||.+|++.+.+||+||+.+...
T Consensus 5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 356788888887766667789999999999998889998 999999999999999999999999988643
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.53 E-value=3.1e-15 Score=102.65 Aligned_cols=51 Identities=55% Similarity=1.293 Sum_probs=46.6
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
+...|+||++.|..++.+..++.|+|.||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 467899999999998888888779999999999999999999999999874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=105.70 Aligned_cols=54 Identities=35% Similarity=0.896 Sum_probs=48.7
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccCC
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLIS 198 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~ 198 (281)
.+...|+||++.|..+..+.+++ |+|.||..||.+|++.+.+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 34678999999999998888898 9999999999999999999999999997543
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=1.5e-14 Score=106.26 Aligned_cols=56 Identities=41% Similarity=0.956 Sum_probs=49.7
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccCCCC
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLISAS 200 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 200 (281)
.+...|+||++.|..++.+.+++ |+|.||..||.+|++.+.+||+||+.+......
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 35678999999999988888898 999999999999999999999999999765443
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=1.7e-14 Score=103.56 Aligned_cols=53 Identities=43% Similarity=0.998 Sum_probs=47.7
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccC
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
.+...|+||++.|..++.+..++ |+|.||..||..|++.+.+||+||+.+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 34678999999999888888898 999999999999999999999999998654
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.6e-14 Score=107.66 Aligned_cols=52 Identities=29% Similarity=0.899 Sum_probs=43.2
Q ss_pred CCCcceeecccccc-----------CcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEE-----------DESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
+.+.|+||++.|.. ++.+++++.|+|.||..||.+||+.+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45678888888854 44466666699999999999999999999999998854
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.39 E-value=2e-13 Score=93.34 Aligned_cols=50 Identities=30% Similarity=0.786 Sum_probs=43.1
Q ss_pred CCCcceeeccccccCc-ceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDE-SLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
+...|+||++.|.+++ .+.+++ |+|.||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4578999999996643 466776 9999999999999999999999998873
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.37 E-value=3.8e-13 Score=105.78 Aligned_cols=51 Identities=27% Similarity=0.593 Sum_probs=41.8
Q ss_pred CCcceeeccccccCc---------------ceeecCCCCCccchHHHHHHHh-----cCCCCcccccccccC
Q 044619 146 GTDCSVCLSEFEEDE---------------SLRLLPKCNHAFHVACVDRWLK-----SHSNCPLCRANLFLI 197 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~---------------~~~~lp~C~H~Fh~~Ci~~Wl~-----~~~~CP~CR~~l~~~ 197 (281)
...|+||++.|..+. .+++++ |+|.||..||..||. .+.+||+||+.+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999999997643 334676 999999999999994 567899999988654
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.37 E-value=2.9e-13 Score=106.06 Aligned_cols=50 Identities=32% Similarity=0.713 Sum_probs=42.8
Q ss_pred CCCcceeeccccccCc---------------ceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDE---------------SLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
+.+.|+||++.|...- .+.+++ |+|.||..||.+||+.+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4678999999998641 255666 9999999999999999999999999864
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.3e-13 Score=96.24 Aligned_cols=51 Identities=25% Similarity=0.659 Sum_probs=43.7
Q ss_pred cCCCcceeeccccccC----cceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 144 IEGTDCSVCLSEFEED----ESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
.+...|+||++.|.+. ..+.+++ |||.||..||..|++.+.+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3567899999999864 3346676 9999999999999999999999999875
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.35 E-value=3.5e-13 Score=96.83 Aligned_cols=52 Identities=25% Similarity=0.632 Sum_probs=44.7
Q ss_pred CCCcceeeccccccC----cceeecCCCCCccchHHHHHHHhcCCCCcccccccccC
Q 044619 145 EGTDCSVCLSEFEED----ESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
+...|+||++.|.+. ..+..++ |||.||..||.+|++.+.+||+||+.+...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 467899999999764 4456676 999999999999999999999999998644
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.32 E-value=4.6e-13 Score=94.08 Aligned_cols=51 Identities=25% Similarity=0.648 Sum_probs=43.7
Q ss_pred CCCcceeeccccccC----cceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEED----ESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
+...|+||++.|.+. ..+..++ |||.||..||.+|++.+.+||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 356899999999864 3446676 99999999999999999999999999864
No 14
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=5.8e-13 Score=95.71 Aligned_cols=51 Identities=33% Similarity=0.968 Sum_probs=44.1
Q ss_pred CcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccCC
Q 044619 143 LIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLIS 198 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~ 198 (281)
..+...|+||++.+.+ .+++ |+|.||..||..|+..+..||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 3456789999999877 5677 9999999999999999999999999987543
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.30 E-value=2.1e-12 Score=92.15 Aligned_cols=50 Identities=32% Similarity=0.873 Sum_probs=43.0
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccC
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
+...|+||++.+.++ +..++ |||.||..||..|++.+.+||+||+.+...
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 356899999998753 46677 999999999999999999999999998643
No 16
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.2e-12 Score=95.98 Aligned_cols=52 Identities=31% Similarity=0.847 Sum_probs=44.1
Q ss_pred CCCcceeeccccccCcceeecCCCC-----CccchHHHHHHHhcCC--CCcccccccccCC
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCN-----HAFHVACVDRWLKSHS--NCPLCRANLFLIS 198 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~-----H~Fh~~Ci~~Wl~~~~--~CP~CR~~l~~~~ 198 (281)
+...|.||+++|..++.+ ++| |+ |.||..||++||..+. +||+||..+....
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 467899999999877666 688 96 9999999999998764 8999999996543
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.8e-12 Score=92.10 Aligned_cols=52 Identities=23% Similarity=0.510 Sum_probs=43.6
Q ss_pred CcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccC
Q 044619 143 LIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
..+...|+||++.|.+. +.+++ |+|.||..||..|++.+..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 34567899999999874 33346 999999999999999999999999998654
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.25 E-value=6.1e-13 Score=105.96 Aligned_cols=51 Identities=33% Similarity=0.715 Sum_probs=1.0
Q ss_pred CCCcceeeccccccC--------------cceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEED--------------ESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~--------------~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
+.+.|+||++.|... +...+++.|+|.||..||.+||+.+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 467899999999752 122232349999999999999999999999999864
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=9.3e-12 Score=92.91 Aligned_cols=54 Identities=30% Similarity=0.734 Sum_probs=45.5
Q ss_pred CcCCCcceeeccccccCcc-eeecCCCCCccchHHHHHHHhcC---CCCcccccccccC
Q 044619 143 LIEGTDCSVCLSEFEEDES-LRLLPKCNHAFHVACVDRWLKSH---SNCPLCRANLFLI 197 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~~~-~~~lp~C~H~Fh~~Ci~~Wl~~~---~~CP~CR~~l~~~ 197 (281)
..+...|+||++.|...+. ..+++ |||.||..||..|++.+ ..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3456789999999998664 56777 99999999999999886 7899999988643
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.4e-12 Score=92.91 Aligned_cols=49 Identities=29% Similarity=0.618 Sum_probs=42.4
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
.+...|+||++.+.+. ..++ |+|.||..||..|+..+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3467899999998764 4566 99999999999999999999999999854
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.21 E-value=1.3e-11 Score=89.94 Aligned_cols=52 Identities=19% Similarity=0.517 Sum_probs=42.3
Q ss_pred CcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcC--CCCcccccccccC
Q 044619 143 LIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSH--SNCPLCRANLFLI 197 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~l~~~ 197 (281)
..+...|+||++.|.+. ..++.|||.||..||..|++.+ ..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 34567899999999875 3455599999999999999876 6899999976543
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=91.24 Aligned_cols=47 Identities=19% Similarity=0.497 Sum_probs=41.4
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
+...|+||++.|.+. .+++ |||.||..||..|+..+..||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 456899999999764 3576 9999999999999999999999999984
No 23
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=2.4e-11 Score=89.04 Aligned_cols=50 Identities=24% Similarity=0.584 Sum_probs=42.2
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcC--CCCcccccccccC
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSH--SNCPLCRANLFLI 197 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~l~~~ 197 (281)
....|+||++.+..++... .|+|.||..||.+||+.+ .+||+||+.+...
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 4578999999998764333 599999999999999988 7999999988643
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.7e-11 Score=87.11 Aligned_cols=49 Identities=20% Similarity=0.514 Sum_probs=40.8
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHH-hcCCCCccccccccc
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWL-KSHSNCPLCRANLFL 196 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl-~~~~~CP~CR~~l~~ 196 (281)
.+...|+||++.+.+.. .++ |||.||..||..|+ ..+..||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 34578999999998753 356 99999999999999 456789999999864
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.3e-11 Score=87.78 Aligned_cols=50 Identities=26% Similarity=0.679 Sum_probs=41.2
Q ss_pred CcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHh---cCCCCccccccccc
Q 044619 143 LIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLK---SHSNCPLCRANLFL 196 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~---~~~~CP~CR~~l~~ 196 (281)
..+...|+||++.|.+. .+++ |||.||..||..|++ .+..||+||+.+..
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34567899999998863 4556 999999999999997 45589999999854
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.13 E-value=1.4e-11 Score=100.35 Aligned_cols=47 Identities=32% Similarity=0.857 Sum_probs=41.3
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
...|+||++.|.++ .+++ |||.||..||..|+..+.+||+||+++..
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 45799999999764 4677 99999999999999999999999999853
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.10 E-value=2.7e-11 Score=96.66 Aligned_cols=52 Identities=25% Similarity=0.632 Sum_probs=44.5
Q ss_pred CCCcceeeccccccC----cceeecCCCCCccchHHHHHHHhcCCCCcccccccccC
Q 044619 145 EGTDCSVCLSEFEED----ESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
+...|+||++.|.++ ..+..++ |||.||..||.+|++.+.+||+||+.+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 457899999999864 3446676 999999999999999999999999998644
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.10 E-value=2.3e-11 Score=93.80 Aligned_cols=48 Identities=29% Similarity=0.753 Sum_probs=41.0
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcC-CCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSH-SNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~-~~CP~CR~~l~ 195 (281)
+...|+||++.|.+. +..++ |||.||..||..|+..+ ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA--RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccCc--cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 467899999999763 33366 99999999999999988 69999999984
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.09 E-value=5.1e-11 Score=87.18 Aligned_cols=49 Identities=18% Similarity=0.555 Sum_probs=41.9
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc-CCCCccccccccc
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS-HSNCPLCRANLFL 196 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~ 196 (281)
.+...|+||++.|.++ .+++ |||.||..||..|+.. +.+||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 3567899999999875 4456 9999999999999987 7789999998853
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.09 E-value=7.6e-11 Score=86.99 Aligned_cols=49 Identities=35% Similarity=0.739 Sum_probs=42.0
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc------CCCCccccccccc
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS------HSNCPLCRANLFL 196 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~------~~~CP~CR~~l~~ 196 (281)
.+...|+||++.|.+. .+++ |+|.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3567899999999875 3576 9999999999999988 6689999999864
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.3e-10 Score=85.67 Aligned_cols=49 Identities=33% Similarity=0.697 Sum_probs=42.1
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc------CCCCccccccccc
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS------HSNCPLCRANLFL 196 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~------~~~CP~CR~~l~~ 196 (281)
.+...|+||++.|.+. ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3567899999999775 3466 9999999999999987 7799999999864
No 32
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=6.8e-11 Score=83.66 Aligned_cols=50 Identities=24% Similarity=0.554 Sum_probs=40.5
Q ss_pred CCcceeecc-ccccCcce-eecCCCCCccchHHHHHHHhc-CCCCccccccccc
Q 044619 146 GTDCSVCLS-EFEEDESL-RLLPKCNHAFHVACVDRWLKS-HSNCPLCRANLFL 196 (281)
Q Consensus 146 ~~~C~ICl~-~~~~~~~~-~~lp~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~ 196 (281)
...|+||++ .|.++... .+++ |||.||..||.+|+.. +..||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 568999999 78776543 3455 9999999999999765 4579999999864
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.1e-10 Score=82.05 Aligned_cols=44 Identities=30% Similarity=0.766 Sum_probs=36.7
Q ss_pred CcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHh---cCCCCccc
Q 044619 143 LIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLK---SHSNCPLC 190 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~---~~~~CP~C 190 (281)
..+...|+||++.|.+. .+++ |||.||..||..|++ .+..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567899999999874 4566 999999999999998 45589998
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.03 E-value=2.9e-11 Score=88.45 Aligned_cols=50 Identities=30% Similarity=0.658 Sum_probs=41.9
Q ss_pred CcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc-------CCCCccccccccc
Q 044619 143 LIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS-------HSNCPLCRANLFL 196 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~-------~~~CP~CR~~l~~ 196 (281)
..+...|+||++.|.+. ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34567899999999875 3466 9999999999999987 5689999999864
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.03 E-value=1.8e-10 Score=86.93 Aligned_cols=50 Identities=20% Similarity=0.569 Sum_probs=41.0
Q ss_pred CcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcC--CCCcccccccc
Q 044619 143 LIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSH--SNCPLCRANLF 195 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~l~ 195 (281)
..+...|+||++.|.++ ..++.|||.||..||..|+..+ ..||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34567899999999875 3454599999999999999754 48999999873
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.03 E-value=9.1e-11 Score=89.88 Aligned_cols=49 Identities=20% Similarity=0.668 Sum_probs=41.4
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
+...|+||++.|.++ +.+++ |||.||..||..|+..+..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 356899999999874 33335 99999999999999999999999998853
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.02 E-value=9.5e-11 Score=93.43 Aligned_cols=52 Identities=25% Similarity=0.632 Sum_probs=43.7
Q ss_pred CCCcceeeccccccC----cceeecCCCCCccchHHHHHHHhcCCCCcccccccccC
Q 044619 145 EGTDCSVCLSEFEED----ESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
+...|+||++.|... ..+..++ |||.||..||.+|++.+++||+||+.+...
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 457899999999863 2335665 999999999999999999999999998643
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.5e-10 Score=79.67 Aligned_cols=43 Identities=37% Similarity=0.950 Sum_probs=35.9
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHH---hcCCCCccc
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWL---KSHSNCPLC 190 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl---~~~~~CP~C 190 (281)
.+...|+||++.+.+. .+++ |||.||..||..|+ ..+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3567899999999875 4466 99999999999995 456789998
No 39
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.01 E-value=1e-10 Score=91.08 Aligned_cols=49 Identities=24% Similarity=0.684 Sum_probs=42.1
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
+...|+||++.|.+. +.+++ |||.||..||..|+..+..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 467899999999763 43346 99999999999999999999999999864
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.98 E-value=1.9e-10 Score=91.70 Aligned_cols=48 Identities=27% Similarity=0.549 Sum_probs=40.6
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCC-CCccccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS-NCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l~~ 196 (281)
+...|+||++.|.++ ..++ |||.||..||..|+..+. .||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 356899999999865 4466 999999999999998655 89999999854
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.98 E-value=3.6e-10 Score=94.45 Aligned_cols=72 Identities=24% Similarity=0.462 Sum_probs=50.4
Q ss_pred CCCCHHHHhhcceeeeecCC-------CCcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc-CCCCcccccc
Q 044619 122 RGLDEVLIKSITVCKYKKGD-------GLIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS-HSNCPLCRAN 193 (281)
Q Consensus 122 ~~l~~~~i~~lp~~~~~~~~-------~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~ 193 (281)
.++....+...+......+. ...+...|+||++.|.+. +.+++ |||.||..||..|+.. +..||+||..
T Consensus 23 ~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~ 99 (165)
T 2ckl_B 23 WELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKK 99 (165)
T ss_dssp CCCCHHHHHCCCCCCCCSCCEEC----CCHHHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCB
T ss_pred ccCCHHHHhcCchhhhccccccccchhhCCCCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCc
Confidence 45555555554433332221 122345899999999873 44456 9999999999999987 7789999999
Q ss_pred ccc
Q 044619 194 LFL 196 (281)
Q Consensus 194 l~~ 196 (281)
+..
T Consensus 100 ~~~ 102 (165)
T 2ckl_B 100 LVS 102 (165)
T ss_dssp CCS
T ss_pred CCC
Confidence 853
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=4.2e-10 Score=87.61 Aligned_cols=47 Identities=28% Similarity=0.707 Sum_probs=40.0
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCC---CCccccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS---NCPLCRANLFL 196 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~---~CP~CR~~l~~ 196 (281)
...|+||++.|.+. ..++ |||.||..||..|+..+. .||+||..+..
T Consensus 21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 56899999999765 3466 999999999999998764 89999998864
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.93 E-value=3.4e-10 Score=89.62 Aligned_cols=50 Identities=28% Similarity=0.650 Sum_probs=42.0
Q ss_pred CcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCC-CCccccccccc
Q 044619 143 LIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS-NCPLCRANLFL 196 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l~~ 196 (281)
..+...|+||++.|.++ ..++ |||.||..||..|+..+. .||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 34567899999999875 4466 999999999999998766 99999998853
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.87 E-value=8.5e-10 Score=91.26 Aligned_cols=48 Identities=25% Similarity=0.519 Sum_probs=40.8
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCC-CCccccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS-NCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l~~ 196 (281)
+...|+||++.|.++ .+++ |||.||..||..|+.... .||+||..+..
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 346899999999875 3466 999999999999998765 89999999864
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.85 E-value=1.1e-09 Score=86.27 Aligned_cols=47 Identities=32% Similarity=0.656 Sum_probs=40.6
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhc-CCCCccccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS-HSNCPLCRANLFL 196 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~ 196 (281)
...|+||++.|.++ ..++ |||.||..||..|+.. +..||+||..+..
T Consensus 23 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 56899999999764 3466 9999999999999987 7789999999864
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.84 E-value=3.8e-10 Score=88.74 Aligned_cols=48 Identities=27% Similarity=0.700 Sum_probs=40.6
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc-CCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS-HSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~ 196 (281)
+...|+||++.|.+. ..++ |||.||..||..|+.. +..||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 356899999999865 4566 9999999999999976 6689999999863
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.81 E-value=2.4e-09 Score=80.20 Aligned_cols=47 Identities=15% Similarity=0.134 Sum_probs=42.0
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
+...|+||++.|.++ .+++ |||.|+..||..|+..+.+||+||.++.
T Consensus 13 ~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred hheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 467899999999986 4566 9999999999999999999999998885
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.79 E-value=6.1e-09 Score=76.84 Aligned_cols=54 Identities=20% Similarity=0.396 Sum_probs=41.4
Q ss_pred cCCCcceeeccccccCcce-eecCCCCCccchHHHHHHHh-cCCCCcccccccccCC
Q 044619 144 IEGTDCSVCLSEFEEDESL-RLLPKCNHAFHVACVDRWLK-SHSNCPLCRANLFLIS 198 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~-~~lp~C~H~Fh~~Ci~~Wl~-~~~~CP~CR~~l~~~~ 198 (281)
.+...|+||++.+...+.. .-++ |||.||..|+..|+. .+..||+||+.+....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 4567899999998654332 2244 999999999999874 3568999999997543
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=1.7e-09 Score=74.52 Aligned_cols=46 Identities=30% Similarity=0.652 Sum_probs=38.9
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccC
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
+...|+||++.|.+. .+++ |||.||..||..| ...||+||+.+...
T Consensus 5 ~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 467899999999875 5677 9999999999884 67899999998643
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.79 E-value=1.6e-09 Score=76.82 Aligned_cols=49 Identities=18% Similarity=0.428 Sum_probs=40.6
Q ss_pred CCCcceeeccccccCccee-ecCCCCCc-cchHHHHHHHhcCCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLR-LLPKCNHA-FHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~-~lp~C~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
+...|.||++.+.+. +. .+| |||. |+..|+..|++.+..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 456899999987653 22 248 9999 8999999999999999999998853
No 51
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.77 E-value=1.7e-09 Score=99.96 Aligned_cols=53 Identities=26% Similarity=0.678 Sum_probs=41.3
Q ss_pred CCCcceeeccccccCccee----ecCCCCCccchHHHHHHHhcC-----------CCCcccccccccC
Q 044619 145 EGTDCSVCLSEFEEDESLR----LLPKCNHAFHVACVDRWLKSH-----------SNCPLCRANLFLI 197 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~----~lp~C~H~Fh~~Ci~~Wl~~~-----------~~CP~CR~~l~~~ 197 (281)
...+|+||++.+..+..+. ..++|+|.||..||.+||++. .+||+||+++...
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 4678999999998733331 123699999999999999763 3699999998643
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.75 E-value=3.9e-09 Score=81.53 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=42.0
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
+...|+||++.|.++ .+++ |||.|+..||..|+..+.+||+||.++.
T Consensus 28 ~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred HhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 467899999999986 4566 9999999999999998899999999885
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.73 E-value=3.1e-09 Score=75.11 Aligned_cols=50 Identities=22% Similarity=0.466 Sum_probs=40.5
Q ss_pred CCCcceeeccccccCcceeecCCCCCc-cchHHHHHHHhcCCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHA-FHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
....|.||++.+.+. .+..+| |||. |+..|+..|.+.+..||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 456899999986653 122347 9998 9999999999988999999999853
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.73 E-value=1.8e-09 Score=88.49 Aligned_cols=47 Identities=23% Similarity=0.467 Sum_probs=40.4
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCC-CCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS-NCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l~ 195 (281)
+...|+||++.|.++ ..++ |||.||..||..|+..+. .||+||.++.
T Consensus 30 ~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 30 AKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 467899999999876 3466 999999999999998765 8999999874
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.72 E-value=4.4e-09 Score=99.23 Aligned_cols=48 Identities=23% Similarity=0.736 Sum_probs=41.2
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHh-cCCCCcccccccccC
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLK-SHSNCPLCRANLFLI 197 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~-~~~~CP~CR~~l~~~ 197 (281)
...|+||++.+.+ ...+| |||.||..||..|+. .+..||+||+.+...
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3689999999865 35677 999999999999998 688999999998654
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.72 E-value=6.1e-09 Score=80.11 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=41.8
Q ss_pred CCCcceeeccccccCcceeecCCCC-CccchHHHHHHHhcCCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCN-HAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~-H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
+...|+||++.|.++ .+++ || |.|+..||..||..+.+||+||.++.
T Consensus 21 ~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp TTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred HhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 467899999999986 4566 99 99999999999999899999999885
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=2.8e-09 Score=84.17 Aligned_cols=45 Identities=29% Similarity=0.681 Sum_probs=38.8
Q ss_pred CCCcceeeccccccCcceeec-CCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLL-PKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
+...|+||++.|.++ ..+ + |||.||..||..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 467899999999875 344 6 999999999999987 88999999974
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.62 E-value=4.7e-09 Score=76.35 Aligned_cols=45 Identities=22% Similarity=0.614 Sum_probs=37.8
Q ss_pred CCCcceeeccccccCcceeecCCCCCc-cchHHHHHHHhcCCCCcccccccccC
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHA-FHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
+...|.||++.+.+. ..+| |||. ||..|+..| ..||+||+.+...
T Consensus 23 ~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 356899999987663 5667 9999 999999999 8899999988643
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.61 E-value=1.4e-08 Score=84.97 Aligned_cols=50 Identities=28% Similarity=0.650 Sum_probs=41.9
Q ss_pred CcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCC-CCccccccccc
Q 044619 143 LIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS-NCPLCRANLFL 196 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l~~ 196 (281)
..+...|+||++.|.++ ..++ |||.||..||..|+..+. .||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 44567899999999875 3466 999999999999997654 99999998854
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.60 E-value=1.7e-08 Score=76.75 Aligned_cols=47 Identities=21% Similarity=0.526 Sum_probs=38.6
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcC------CCCcc--cccc
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSH------SNCPL--CRAN 193 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~------~~CP~--CR~~ 193 (281)
.+...|+||++.|.++ .+++.|||.|+..||..||..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3567899999999975 3443499999999999999764 48999 9866
No 61
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.52 E-value=5.5e-08 Score=68.13 Aligned_cols=47 Identities=21% Similarity=0.622 Sum_probs=36.8
Q ss_pred CCCcceeeccccccCcceeecCCCC--C---ccchHHHHHHHhc--CCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCN--H---AFHVACVDRWLKS--HSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~--H---~Fh~~Ci~~Wl~~--~~~CP~CR~~l~ 195 (281)
+...|.||+++.. +.+ ++| |. | .||..||.+|+.. +.+||+||..+.
T Consensus 5 ~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4568999999843 334 577 65 4 9999999999964 568999998874
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=4.1e-08 Score=87.43 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=40.3
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcC-CCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSH-SNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~-~~CP~CR~~l~ 195 (281)
+...|+||++.|.++ .+++ |||.|+..||..|+..+ .+||+||.++.
T Consensus 207 ~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 456899999999986 4566 99999999999999864 45999999885
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.50 E-value=3.9e-08 Score=74.54 Aligned_cols=48 Identities=21% Similarity=0.679 Sum_probs=40.1
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcC--------CCCcc--cccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSH--------SNCPL--CRAN 193 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~--------~~CP~--CR~~ 193 (281)
+...|.||++.+..++.+.+++ |||.||..|+..++..+ ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3568999999998877776666 99999999999998641 36999 9887
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.1e-07 Score=69.07 Aligned_cols=44 Identities=20% Similarity=0.605 Sum_probs=36.1
Q ss_pred CCcceeeccccccCcceeecCCCCCc-cchHHHHHHHhcCCCCcccccccccC
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHA-FHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
...|.||++.+.+. ..+| |||. ||..|+.. ...||+||..+...
T Consensus 25 ~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 45899999998663 4577 9999 99999964 47899999998653
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=2.5e-07 Score=66.24 Aligned_cols=45 Identities=33% Similarity=0.742 Sum_probs=37.3
Q ss_pred CCCcceeeccccccCcceeecCCCCCc-cchHHHHHHHhcCCCCcccccccccC
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHA-FHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
+...|.||++.+.+ +.++| |+|. |+..|+.. ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 45789999998654 46788 9999 99999984 58999999998654
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.33 E-value=2.6e-07 Score=78.46 Aligned_cols=51 Identities=12% Similarity=0.140 Sum_probs=42.0
Q ss_pred CCcCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcC-CCCccccccccc
Q 044619 142 GLIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSH-SNCPLCRANLFL 196 (281)
Q Consensus 142 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~-~~CP~CR~~l~~ 196 (281)
...+...|+||++.|.++ .+++ |||.|+..||..|+..+ .+||+||.++..
T Consensus 102 ~ip~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 102 EIPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCcHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 334567899999999985 4566 99999999999999874 469999988853
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.30 E-value=1e-07 Score=70.30 Aligned_cols=44 Identities=27% Similarity=0.680 Sum_probs=37.0
Q ss_pred CCcceeeccccccCcceeecCCCCCc-cchHHHHHHHhcCCCCcccccccccC
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHA-FHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
...|.||++.+.+ +..+| |||. |+..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 4689999998765 35677 9999 999999987 4999999999764
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.16 E-value=5.9e-07 Score=63.00 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=40.8
Q ss_pred CcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccccC
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
..|+||++.|.++ .+++.|||+|.+.||.+||+.+.+||+.+.+|...
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 5799999999975 34523999999999999999988999999998543
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.07 E-value=5.5e-07 Score=83.93 Aligned_cols=45 Identities=27% Similarity=0.670 Sum_probs=37.8
Q ss_pred CCCcceeeccccccCcceeecCCCCCc-cchHHHHHHHhcCCCCcccccccccC
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHA-FHVACVDRWLKSHSNCPLCRANLFLI 197 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 197 (281)
+...|+||++.+.+. ..+| |||. ||..|+..| ..||+||..+...
T Consensus 294 ~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 456899999998753 5567 9999 999999998 7899999998643
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.05 E-value=1.5e-06 Score=77.84 Aligned_cols=48 Identities=25% Similarity=0.558 Sum_probs=39.0
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcC--CCCcc--cccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSH--SNCPL--CRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~--~~CP~--CR~~l~ 195 (281)
....|+||++.|.++ |+.+ .|||.|+..||..|+..+ ..||+ ||+.+.
T Consensus 180 ~el~CPIcl~~f~DP--Vts~-~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISR-KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEES-SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCC--eeeC-CCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 345799999999875 3334 499999999999999765 46999 999874
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.95 E-value=3.6e-06 Score=64.34 Aligned_cols=49 Identities=27% Similarity=0.508 Sum_probs=38.9
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHh-cCCCCcccccccccCCC
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLK-SHSNCPLCRANLFLISA 199 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~-~~~~CP~CR~~l~~~~~ 199 (281)
.|.+|--.+.. ..++.| |+|+|+.+|+..|.+ ..++||+|+.++..+..
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 47777555543 678898 999999999999985 46789999999976543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.89 E-value=9.1e-06 Score=71.95 Aligned_cols=49 Identities=22% Similarity=0.564 Sum_probs=40.5
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCC--CCcccccccccC
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS--NCPLCRANLFLI 197 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~--~CP~CR~~l~~~ 197 (281)
...|.||.+....+ ...+.|+|.||..|+..|++.+. .||.|+..+...
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 67899999998876 33445999999999999998765 899999987543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.82 E-value=0.028 Score=42.24 Aligned_cols=60 Identities=22% Similarity=0.468 Sum_probs=44.2
Q ss_pred CCcCCCcceeeccccccCcceeecCCCC-CccchHHHHHHHhcCCCCcccccccccCCCCCCCCCCC
Q 044619 142 GLIEGTDCSVCLSEFEEDESLRLLPKCN-HAFHVACVDRWLKSHSNCPLCRANLFLISASPQLPPIT 207 (281)
Q Consensus 142 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~-H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~~~~~~ 207 (281)
....-..|-.|+-..+. .| +|+ |.+|..|+..-|.....||+|.++|.+.-.....+..+
T Consensus 24 s~~G~~nCKsCWf~~k~--LV----~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~~PSAP 84 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKG--LV----ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAAPTAP 84 (99)
T ss_dssp CCSCCCCCCSSCSCCSS--EE----ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTTTSCCCC
T ss_pred cccCcccChhhccccCC--ee----eecchhhHHHHHHHHHhhccCCcccCCcCCcceecCcCCCCC
Confidence 34456789999866442 22 255 99999999999999999999999998765554443333
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.70 E-value=0.064 Score=37.68 Aligned_cols=46 Identities=26% Similarity=0.522 Sum_probs=33.5
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcC----CCCccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSH----SNCPLCRANL 194 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~----~~CP~CR~~l 194 (281)
....|.||.+. ++ +..--.|...||..|++..|... -.||.|+...
T Consensus 11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45679999753 44 44444699999999999888543 3799997543
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.48 E-value=0.061 Score=40.23 Aligned_cols=35 Identities=17% Similarity=0.406 Sum_probs=26.0
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHH
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRW 180 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~W 180 (281)
+...|.||++.+.......-+. |+|.|+..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 3468999998754433334465 9999999999984
No 76
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=88.79 E-value=0.43 Score=33.38 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044619 62 AIIGILASAFLLVSYYTI 79 (281)
Q Consensus 62 iii~il~~~~llv~~~~i 79 (281)
+++|-++++++++.+.++
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 567777766666666555
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=87.42 E-value=0.43 Score=35.08 Aligned_cols=36 Identities=22% Similarity=0.602 Sum_probs=24.4
Q ss_pred CcCCCcceeeccccccCcceeecCCCCCccchHHHHHH
Q 044619 143 LIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRW 180 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~W 180 (281)
...+..|.||- .|..++....- .|+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~-~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCE-VWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTC-CCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCCcccCccc-cccccceeccc-cccccccHhhcccc
Confidence 34567899985 33344333222 38999999999985
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=84.94 E-value=0.42 Score=32.70 Aligned_cols=45 Identities=29% Similarity=0.724 Sum_probs=31.7
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc----CCCCcccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----HSNCPLCRAN 193 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~~ 193 (281)
....|.||... ++.+ .--.|...||..|+..-+.. .-.||.|++.
T Consensus 10 ~~~~C~vC~~~---g~ll-~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEII-LCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC---SSEE-ECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCC---CcEE-ECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 45689999863 4344 44469999999999975532 3369999653
No 79
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=84.73 E-value=1.9 Score=28.90 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044619 57 SPLVIAIIGILASAFLLVSYYTILSKY 83 (281)
Q Consensus 57 ~~lviiii~il~~~~llv~~~~i~~~~ 83 (281)
.++++++++++++++++..+..++.|+
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567888888888888877777666654
No 80
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=84.01 E-value=0.29 Score=33.62 Aligned_cols=49 Identities=24% Similarity=0.506 Sum_probs=33.8
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHh-----cCCCCcccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLK-----SHSNCPLCRAN 193 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~-----~~~~CP~CR~~ 193 (281)
+...|.||...+.++...+.--.|..-||..|+.--.. ..-.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 56789999988864443333335999999999864322 34479999753
No 81
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=82.77 E-value=3.8 Score=26.27 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=7.0
Q ss_pred chhHHHHHHHHH
Q 044619 56 FSPLVIAIIGIL 67 (281)
Q Consensus 56 f~~lviiii~il 67 (281)
...+...++|++
T Consensus 11 ~~~Ia~~vVGvl 22 (44)
T 2jwa_A 11 LTSIISAVVGIL 22 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccchHHHHHHHH
Confidence 455666667744
No 82
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=82.53 E-value=2.1 Score=28.68 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044619 57 SPLVIAIIGILASAFLLVSYYTILSKY 83 (281)
Q Consensus 57 ~~lviiii~il~~~~llv~~~~i~~~~ 83 (281)
.++++++++++++++++..+..++.|+
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466778888888888777776666654
No 83
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=82.06 E-value=0.23 Score=35.33 Aligned_cols=50 Identities=18% Similarity=0.337 Sum_probs=34.5
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHh----cCCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLK----SHSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~----~~~~CP~CR~~l~ 195 (281)
+...|.||..... ++..+..-.|.-.||..|+..-+. ..-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4567999987754 333334445999999999976543 2346999987663
No 84
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=81.17 E-value=4 Score=26.21 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=9.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHH
Q 044619 54 PSFSPLVIAIIGILASAFLLVS 75 (281)
Q Consensus 54 ~~f~~lviiii~il~~~~llv~ 75 (281)
++...+...+++-++.++++++
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~ 28 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGL 28 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEeehHHHHHHHHHHH
Confidence 3444555555543333333333
No 85
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=80.55 E-value=0.54 Score=39.53 Aligned_cols=48 Identities=23% Similarity=0.549 Sum_probs=34.3
Q ss_pred CCcceeeccccccCcc---eeecCCCCCccchHHHHH------HHh-----cCCCCcccccc
Q 044619 146 GTDCSVCLSEFEEDES---LRLLPKCNHAFHVACVDR------WLK-----SHSNCPLCRAN 193 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~---~~~lp~C~H~Fh~~Ci~~------Wl~-----~~~~CP~CR~~ 193 (281)
+..|+||...+..++. .+..-.|..-||..|+.- -+. ..-.||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 4579999999988762 334446999999999742 121 25689999754
No 86
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.34 E-value=0.37 Score=35.59 Aligned_cols=55 Identities=18% Similarity=0.398 Sum_probs=37.7
Q ss_pred CCcceeecccccc-CcceeecCCCCCccchHHHHHHHh--------cCCCCcccccccccCCCC
Q 044619 146 GTDCSVCLSEFEE-DESLRLLPKCNHAFHVACVDRWLK--------SHSNCPLCRANLFLISAS 200 (281)
Q Consensus 146 ~~~C~ICl~~~~~-~~~~~~lp~C~H~Fh~~Ci~~Wl~--------~~~~CP~CR~~l~~~~~~ 200 (281)
...|.||...-.. +..+...-.|...||..|+.+=|. ....|+.|+.........
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~ 79 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQK 79 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhccc
Confidence 5689999976432 234445556999999999986553 234799998776554443
No 87
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=78.87 E-value=0.37 Score=41.01 Aligned_cols=46 Identities=30% Similarity=0.527 Sum_probs=33.4
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc----CCCCccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----HSNCPLCRANL 194 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~~l 194 (281)
..+.|.+|... + .+.....|...||..|+.+-|.. ...||.|+..-
T Consensus 6 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45789999743 3 35555569999999999876643 34799997644
No 88
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=78.66 E-value=0.34 Score=33.21 Aligned_cols=46 Identities=26% Similarity=0.558 Sum_probs=31.4
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc----CCCCccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----HSNCPLCRANL 194 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~~l 194 (281)
+...|.||.+. ++.+ .--.|...||..|+..-|.. .-.||.|+...
T Consensus 8 ~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELL-CCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---SSCB-CCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---CCEE-EcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 45679999852 3333 33459999999999864432 33699997543
No 89
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=78.45 E-value=0.63 Score=30.36 Aligned_cols=44 Identities=36% Similarity=0.806 Sum_probs=28.6
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHhc----CCCCccccc
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----HSNCPLCRA 192 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~ 192 (281)
.|.||...-..++.+ .--.|...||..|+.+=|.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll-~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLI-LCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCE-ECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEE-ECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 478887653333344 44469999999999754432 235999864
No 90
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=78.18 E-value=5.2 Score=25.38 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044619 57 SPLVIAIIGILASAFLLVSYYTILSKY 83 (281)
Q Consensus 57 ~~lviiii~il~~~~llv~~~~i~~~~ 83 (281)
.++++++++++++++++..+..++.|+
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~LwK~ 34 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLAMWKV 34 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 577888888888888887777766553
No 91
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=78.08 E-value=0.37 Score=40.17 Aligned_cols=46 Identities=30% Similarity=0.574 Sum_probs=33.0
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc----CCCCccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----HSNCPLCRANL 194 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~~l 194 (281)
+.+.|.+|.+. ++ +.....|.-.||..|+.+-|.. ...||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35679999853 44 4445569999999999876643 34699998654
No 92
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=77.34 E-value=0.59 Score=35.66 Aligned_cols=46 Identities=26% Similarity=0.624 Sum_probs=30.6
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc----CCCCcccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----HSNCPLCR 191 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----~~~CP~CR 191 (281)
+.+.|.||.+.=...+.+.- ..|...||..|+...+.. ...||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C-~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFC-TTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEEC-SSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeEC-CCCCCCcChHHhCCccccccccCccCCcCC
Confidence 56789999876332222433 459999999999877642 33566664
No 93
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=75.00 E-value=5 Score=25.72 Aligned_cols=7 Identities=14% Similarity=0.714 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 044619 59 LVIAIIG 65 (281)
Q Consensus 59 lviiii~ 65 (281)
+...+++
T Consensus 13 IA~gVVg 19 (44)
T 2ks1_B 13 IATGMVG 19 (44)
T ss_dssp STHHHHH
T ss_pred EEeehhH
Confidence 4444444
No 94
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=74.76 E-value=0.89 Score=34.12 Aligned_cols=44 Identities=20% Similarity=0.417 Sum_probs=30.5
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhc---CCCCcccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS---HSNCPLCR 191 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~---~~~CP~CR 191 (281)
...| ||......+..|.- -.|.-.||..|+..=+.. .-.||.|+
T Consensus 28 ~vrC-iC~~~~~~~~mi~C-d~C~~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICC-DKCSVWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEB-TTTCBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred CEEe-ECCCccCCCcEEEc-CCCCCcCcCcCCCCCccCCCCCEECCCCc
Confidence 4568 89877666655544 469999999998753222 23799996
No 95
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=74.50 E-value=3.4 Score=28.84 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Q 044619 62 AIIGILASAFLLVSYYTILSKYCGNTNSASRRRE 95 (281)
Q Consensus 62 iii~il~~~~llv~~~~i~~~~c~~~~~~~r~~~ 95 (281)
.++++|.+++.++++..+.+.+|-++++++|+.+
T Consensus 9 ~~LivlGg~~~lll~~glcI~ccvkcrhRrrqAe 42 (70)
T 2klu_A 9 MALIVLGGVAGLLLFIGLGIFFSVRSRHRRRQAE 42 (70)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSSCT
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3666666667666666666665665655544433
No 96
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.38 E-value=0.44 Score=31.94 Aligned_cols=44 Identities=32% Similarity=0.719 Sum_probs=30.0
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc----CCCCccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----HSNCPLCRA 192 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~ 192 (281)
+...|.||... ++.+ .--.|...||..|+.+=|.. .-.||.|+.
T Consensus 8 ~~~~C~vC~~~---g~ll-~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCE-ECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEE-EcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 46789999874 4344 34469999999999864432 235888853
No 97
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.85 E-value=2.6 Score=30.06 Aligned_cols=48 Identities=23% Similarity=0.443 Sum_probs=32.0
Q ss_pred CCCcceeecccccc-CcceeecCCCCCccchHHHHHHHh-----cCCCCccccccc
Q 044619 145 EGTDCSVCLSEFEE-DESLRLLPKCNHAFHVACVDRWLK-----SHSNCPLCRANL 194 (281)
Q Consensus 145 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~Fh~~Ci~~Wl~-----~~~~CP~CR~~l 194 (281)
+...| ||...+.. +..|.-- .|..-||..|+.--.. ..-.||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECG-LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBT-TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcC-CCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34567 89888753 3344444 5999999999863221 344799997654
No 98
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=70.39 E-value=7.2 Score=24.97 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044619 60 VIAIIGILASAFLLVSYYTILSKYCGN 86 (281)
Q Consensus 60 viiii~il~~~~llv~~~~i~~~~c~~ 86 (281)
-.+..+++.++++++.+...+..|.++
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEeehHHHHHHHHHHHHHHHHhhh
Confidence 344455555555555555444333333
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=70.34 E-value=4.3 Score=30.89 Aligned_cols=46 Identities=24% Similarity=0.460 Sum_probs=29.1
Q ss_pred CCcceeecccc-----ccCcceeecCCCCCccchHHHHH------HH-hcCCCCcccc
Q 044619 146 GTDCSVCLSEF-----EEDESLRLLPKCNHAFHVACVDR------WL-KSHSNCPLCR 191 (281)
Q Consensus 146 ~~~C~ICl~~~-----~~~~~~~~lp~C~H~Fh~~Ci~~------Wl-~~~~~CP~CR 191 (281)
...|.+|+..= ..++.+..-..|+..||..|+.. -+ ...-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 45799998752 12234444446999999999953 22 2344677775
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=70.21 E-value=0.89 Score=34.84 Aligned_cols=45 Identities=27% Similarity=0.679 Sum_probs=30.1
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHhc----CCCCccccc
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----HSNCPLCRA 192 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~ 192 (281)
.|.||...-.++..+..--.|...||..|+.+-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688888642233344444469999999999765533 336999874
No 101
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=70.14 E-value=0.45 Score=32.32 Aligned_cols=47 Identities=30% Similarity=0.712 Sum_probs=32.5
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc----CCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----HSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~~l~ 195 (281)
....|.||... ++.+ .-..|...||..|+.+=|.. .-.||.|+....
T Consensus 4 ~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCE-ECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEE-EcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45689999874 4444 34469999999999864432 336999976543
No 102
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=70.04 E-value=4.1 Score=32.73 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=31.4
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHh-----------cCCCCcccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLK-----------SHSNCPLCR 191 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~-----------~~~~CP~CR 191 (281)
..+.|.+|.+- + .+...-.|-.+||..||.+=|. ....||+|+
T Consensus 62 ~~d~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 62 MDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp CBCSCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCeecccCCC---C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 46789999863 4 3444456999999999996552 234799996
No 103
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=69.84 E-value=1.4 Score=31.18 Aligned_cols=49 Identities=22% Similarity=0.473 Sum_probs=32.7
Q ss_pred CCCcceeecccc-ccCcceeecCCCCCccchHHHHHHH--hcCCCCcccccc
Q 044619 145 EGTDCSVCLSEF-EEDESLRLLPKCNHAFHVACVDRWL--KSHSNCPLCRAN 193 (281)
Q Consensus 145 ~~~~C~ICl~~~-~~~~~~~~lp~C~H~Fh~~Ci~~Wl--~~~~~CP~CR~~ 193 (281)
+...|.||...- .++..+..--.|.-.||..|+..-. +..-.||.|+..
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 467899998753 2333444555699999999997532 123368888653
No 104
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=69.55 E-value=4.9 Score=29.24 Aligned_cols=48 Identities=19% Similarity=0.429 Sum_probs=35.1
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCC-----CCcccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHS-----NCPLCRAN 193 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~-----~CP~CR~~ 193 (281)
...|.+|.+.+++..-|..-..=.|.||..|-+..++++. .||--.+-
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kC 67 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKC 67 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCC
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCcc
Confidence 5689999999998765543333469999999999887533 47766443
No 105
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=68.43 E-value=5 Score=28.94 Aligned_cols=22 Identities=9% Similarity=0.244 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044619 62 AIIGILASAFLLVSYYTILSKY 83 (281)
Q Consensus 62 iii~il~~~~llv~~~~i~~~~ 83 (281)
++++++++++++.++++++.|+
T Consensus 13 Iv~gvi~gilliGllllliwk~ 34 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWKL 34 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 106
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=68.42 E-value=0.64 Score=32.24 Aligned_cols=44 Identities=30% Similarity=0.671 Sum_probs=30.9
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc----CCCCccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----HSNCPLCRA 192 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~ 192 (281)
+...|.||.+. ++.+ .-..|...||..|+.+=|.. .-.||.|..
T Consensus 7 ~~~~C~vC~~~---g~ll-~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---GELI-CCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---SSCE-ECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---CCEE-EcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 46789999863 4444 44469999999999864432 336999964
No 107
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=67.79 E-value=20 Score=26.43 Aligned_cols=52 Identities=19% Similarity=0.469 Sum_probs=36.2
Q ss_pred CCCcceeeccccccCc--ceee-cCCCCCccchHHHHH-HHhcCCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEEDE--SLRL-LPKCNHAFHVACVDR-WLKSHSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~--~~~~-lp~C~H~Fh~~Ci~~-Wl~~~~~CP~CR~~l~~ 196 (281)
....|.||-++..... .+.+ .-.|+--.|+.|++- .-..+..||.|+.....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 3568999999865322 1222 224778889999874 44567789999988854
No 108
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.73 E-value=0.64 Score=34.59 Aligned_cols=49 Identities=29% Similarity=0.573 Sum_probs=33.1
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc----CCCCcccccc
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----HSNCPLCRAN 193 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~~ 193 (281)
.+...|.||...-..+ .+...-.|...||..|+.+=|.. .-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3456799998764333 34444469999999999754322 3369999654
No 109
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=67.41 E-value=5 Score=25.72 Aligned_cols=8 Identities=13% Similarity=0.218 Sum_probs=3.7
Q ss_pred CchhHHHH
Q 044619 55 SFSPLVIA 62 (281)
Q Consensus 55 ~f~~lvii 62 (281)
.+..-++.
T Consensus 12 ~IA~gVVg 19 (44)
T 2ks1_B 12 SIATGMVG 19 (44)
T ss_dssp SSTHHHHH
T ss_pred eEEeehhH
Confidence 34444444
No 110
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=67.27 E-value=0.98 Score=31.63 Aligned_cols=48 Identities=19% Similarity=0.464 Sum_probs=31.5
Q ss_pred CcCCCcceeeccccccCcceeecCCCCCccchHHHHHHH---hcCCCCccccc
Q 044619 143 LIEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWL---KSHSNCPLCRA 192 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl---~~~~~CP~CR~ 192 (281)
..+...| ||......+..|.-- .|..-||..|+.--- ...-.||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd-~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECT-TTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCCCCCEEECC-CCCccccccccCcCcccCCCcEECCCCCC
Confidence 3456678 998876643355444 599999999986422 12346888864
No 111
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=67.13 E-value=1.3 Score=36.36 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=32.2
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHH-----hcCCCCcccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWL-----KSHSNCPLCRAN 193 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl-----~~~~~CP~CR~~ 193 (281)
+...| +|......+......-.|...||..|+.--. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 35678 9988765443334444699999999985322 234579999764
No 112
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=66.11 E-value=1.7 Score=31.91 Aligned_cols=50 Identities=22% Similarity=0.449 Sum_probs=33.5
Q ss_pred CCCcceeecccc-ccCcceeecCCCCCccchHHHHHHH--hcCCCCccccccc
Q 044619 145 EGTDCSVCLSEF-EEDESLRLLPKCNHAFHVACVDRWL--KSHSNCPLCRANL 194 (281)
Q Consensus 145 ~~~~C~ICl~~~-~~~~~~~~lp~C~H~Fh~~Ci~~Wl--~~~~~CP~CR~~l 194 (281)
+...|.||...- .....+.....|.-.||..|+..-+ .....||.|....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 457899998753 2223444555699999999997533 1234699997654
No 113
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=65.83 E-value=2.9 Score=30.86 Aligned_cols=45 Identities=29% Similarity=0.650 Sum_probs=31.9
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhc----CCCCcccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----HSNCPLCRAN 193 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~~ 193 (281)
+...|.+|... ++ +.....|.-.||..|+.+=|.. ...||.|+..
T Consensus 24 n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 46689999864 43 3344468899999999775533 3369999754
No 114
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.35 E-value=2.3 Score=30.05 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=32.1
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHH---------hcCCCCccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWL---------KSHSNCPLCRANL 194 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl---------~~~~~CP~CR~~l 194 (281)
...| ||......+..|.-- .|..-||..|+.--. ...-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3567 898887654455444 599999999985221 2466899997543
No 115
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=64.49 E-value=2.1 Score=28.12 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=28.7
Q ss_pred cceeeccccccCcceeecC-CCCCccchHHHHHHH----hcCCCCcccc
Q 044619 148 DCSVCLSEFEEDESLRLLP-KCNHAFHVACVDRWL----KSHSNCPLCR 191 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp-~C~H~Fh~~Ci~~Wl----~~~~~CP~CR 191 (281)
.|.+|...+.++...+.-- .|..-||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4678888876544444443 488899999975321 3556799885
No 116
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=64.34 E-value=12 Score=23.77 Aligned_cols=26 Identities=8% Similarity=0.193 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044619 60 VIAIIGILASAFLLVSYYTILSKYCG 85 (281)
Q Consensus 60 viiii~il~~~~llv~~~~i~~~~c~ 85 (281)
+.++.+++++++++-++..++.|++.
T Consensus 10 ~~Iv~gvi~~ivliGl~lLliwk~~~ 35 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAALLIWKLLI 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555543
No 117
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=63.93 E-value=4.6 Score=30.87 Aligned_cols=45 Identities=24% Similarity=0.486 Sum_probs=28.5
Q ss_pred Ccceeecccccc------CcceeecCCCCCccchHHHHHHH-------hcCCCCcccc
Q 044619 147 TDCSVCLSEFEE------DESLRLLPKCNHAFHVACVDRWL-------KSHSNCPLCR 191 (281)
Q Consensus 147 ~~C~ICl~~~~~------~~~~~~lp~C~H~Fh~~Ci~~Wl-------~~~~~CP~CR 191 (281)
..|.||+..-.. ++.+..-..|+..||..|+..++ ...-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 479999875421 22333444599999999987542 2244677763
No 118
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=62.13 E-value=7.3 Score=30.75 Aligned_cols=44 Identities=25% Similarity=0.528 Sum_probs=31.1
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHH-----H-h-----cCCCCccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRW-----L-K-----SHSNCPLCRA 192 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~W-----l-~-----~~~~CP~CR~ 192 (281)
..+.|.||.+- + .+..-..|-.+||..||.+= + + ....|++|+.
T Consensus 56 ~~~~C~vC~dG---G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC---S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC---C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 45679999853 3 44444569999999999974 2 2 2247999954
No 119
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=61.88 E-value=5.1 Score=27.66 Aligned_cols=33 Identities=27% Similarity=0.646 Sum_probs=25.6
Q ss_pred CCcceeeccccccCcceeecC-CCCCccchHHHH
Q 044619 146 GTDCSVCLSEFEEDESLRLLP-KCNHAFHVACVD 178 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp-~C~H~Fh~~Ci~ 178 (281)
...|.+|...+..++..+..- .|.--||..|+.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 467999999987766555554 699999999975
No 120
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=61.18 E-value=1.4 Score=36.91 Aligned_cols=44 Identities=27% Similarity=0.646 Sum_probs=30.6
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhc----CCCCcccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----HSNCPLCRAN 193 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~~ 193 (281)
.+.|.+|... ++.+ ..-.|...||..|+.+=+.. ...||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCC-CCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Ccee-ECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4579999854 4433 34459999999999764432 3369999765
No 121
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=60.29 E-value=4.5 Score=27.55 Aligned_cols=50 Identities=20% Similarity=0.551 Sum_probs=33.9
Q ss_pred CCCcceeecccccc-CcceeecCCCCCccchHHHHHHHh-------cCCCCccccccc
Q 044619 145 EGTDCSVCLSEFEE-DESLRLLPKCNHAFHVACVDRWLK-------SHSNCPLCRANL 194 (281)
Q Consensus 145 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~Fh~~Ci~~Wl~-------~~~~CP~CR~~l 194 (281)
+...|.||...... +..+..-..|.-.||..|+..=|. ....|+.|+...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 46789999976432 234444556999999999886431 334799996543
No 122
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=60.09 E-value=2.3 Score=30.32 Aligned_cols=49 Identities=29% Similarity=0.511 Sum_probs=32.1
Q ss_pred CCCcceeeccccccCcceeec-CCCCCccchHHHHHHH---------hcCCCCccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLL-PKCNHAFHVACVDRWL---------KSHSNCPLCRANL 194 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~Fh~~Ci~~Wl---------~~~~~CP~CR~~l 194 (281)
+...| ||......+..|.-- +.|..-||..|+.--- ..+-.||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34578 898875555455433 1499999999986321 1345799997643
No 123
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=60.04 E-value=4.7 Score=30.76 Aligned_cols=48 Identities=23% Similarity=0.538 Sum_probs=31.4
Q ss_pred CcCCCcceeeccccccCcceeecC--CCCCccchHHHHHHHhc----CCCCccccccccc
Q 044619 143 LIEGTDCSVCLSEFEEDESLRLLP--KCNHAFHVACVDRWLKS----HSNCPLCRANLFL 196 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~~~~~~lp--~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~~l~~ 196 (281)
..+.+.|.+|.+ .++ +..-- .|...||..|+. |.. .-.||.|+..+-.
T Consensus 12 ~~~~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 12 QMHEDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp CSSCSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCCcCCC---CCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 345678999983 343 33332 488999999997 433 2369888655543
No 124
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.39 E-value=3.7 Score=30.46 Aligned_cols=45 Identities=33% Similarity=0.615 Sum_probs=28.6
Q ss_pred CCCcceeeccccccCcceeecCC--CC-CccchHHHHHHHhc----CCCCccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPK--CN-HAFHVACVDRWLKS----HSNCPLCRANL 194 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~Wl~~----~~~CP~CR~~l 194 (281)
+...| ||..... ++.| ..-. |. ..||..|+. |.. +..||.|+...
T Consensus 35 e~~yC-iC~~~~~-g~MI-~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCC-CCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEe-EecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 45567 9988653 4433 2224 55 689999997 322 34799997643
No 125
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=58.62 E-value=5.3 Score=41.57 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=40.7
Q ss_pred CCCcceeeccccccCcceeecCCCC-CccchHHHHHHHhcCCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCN-HAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~-H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
+...|+|-++.|.++ .++| -| +.|-+.+|.+||.++.+||+=|.++..
T Consensus 890 ~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 455799999999886 5666 76 689999999999999999999988853
No 126
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=55.43 E-value=14 Score=23.60 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 044619 57 SPLVIAIIGILASAFLLVSYY 77 (281)
Q Consensus 57 ~~lviiii~il~~~~llv~~~ 77 (281)
++.-.++.+++. +++++.+.
T Consensus 9 ~~~~~Ia~~vVG-vll~vi~~ 28 (44)
T 2jwa_A 9 SPLTSIISAVVG-ILLVVVLG 28 (44)
T ss_dssp CSHHHHHHHHHH-HHHHHHHH
T ss_pred CcccchHHHHHH-HHHHHHHH
Confidence 444444444444 44443333
No 127
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=54.88 E-value=18 Score=22.25 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 044619 58 PLVIAIIGILASAFLLVSYYTI 79 (281)
Q Consensus 58 ~lviiii~il~~~~llv~~~~i 79 (281)
.+.-++++.++.+.+++.+.++
T Consensus 12 aIAGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 12 EIVAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeehHHHHHHHHHHHHHHH
Confidence 3444556666555555544433
No 128
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=53.03 E-value=1.6 Score=31.38 Aligned_cols=44 Identities=34% Similarity=0.743 Sum_probs=28.0
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHhc----C-CCCccccc
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----H-SNCPLCRA 192 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----~-~~CP~CR~ 192 (281)
.|.||...-..+ .+..--.|...||..|+.+-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466676553333 34444469999999999865532 2 46888875
No 129
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.88 E-value=2.3 Score=30.52 Aligned_cols=44 Identities=32% Similarity=0.710 Sum_probs=29.1
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHhc-----CCCCccccc
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS-----HSNCPLCRA 192 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~-----~~~CP~CR~ 192 (281)
.|.||...-..+ .+..--.|...||..|+.+=|.. .-.||.|+.
T Consensus 28 ~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 788998643333 34444469999999999854422 346888854
No 130
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=51.25 E-value=6.5 Score=27.55 Aligned_cols=45 Identities=33% Similarity=0.615 Sum_probs=28.3
Q ss_pred CCCcceeeccccccCcceeecCC--CC-CccchHHHHHHHhc----CCCCccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPK--CN-HAFHVACVDRWLKS----HSNCPLCRANL 194 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~Wl~~----~~~CP~CR~~l 194 (281)
+...| ||..... ++.| ..-. |. ..||..|+. |.. +-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~MI-~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEE-CCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEe-EeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 35568 8987643 4433 3334 55 689999997 332 33699997543
No 131
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=51.16 E-value=18 Score=25.92 Aligned_cols=30 Identities=10% Similarity=0.094 Sum_probs=15.5
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044619 57 SPLV-IAIIGILASAFLLVSYYTILSKYCGN 86 (281)
Q Consensus 57 ~~lv-iiii~il~~~~llv~~~~i~~~~c~~ 86 (281)
..++ .++.++++..+++++++-++.....+
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~~~i~Dr 41 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLLITIHDR 41 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 45555565555555555555443333
No 132
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=50.99 E-value=2.3 Score=29.79 Aligned_cols=44 Identities=34% Similarity=0.743 Sum_probs=27.9
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHhc-----CCCCccccc
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS-----HSNCPLCRA 192 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~-----~~~CP~CR~ 192 (281)
.|.||...-..+ .+..--.|...||..|+.+=|.. .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466777543333 34444469999999999854432 346888864
No 133
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=49.17 E-value=6.9 Score=29.53 Aligned_cols=49 Identities=27% Similarity=0.481 Sum_probs=33.7
Q ss_pred CCcceeeccccccCcceeecC-CCCCccchHHHHHHH---h-------cCCCCccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLP-KCNHAFHVACVDRWL---K-------SHSNCPLCRANL 194 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp-~C~H~Fh~~Ci~~Wl---~-------~~~~CP~CR~~l 194 (281)
...|.||...+.........- .|..-||..|+.--- + ..-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 347999999986654444443 589999999975221 0 345799998754
No 134
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=47.87 E-value=13 Score=22.79 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 044619 63 IIGILASAFLLV 74 (281)
Q Consensus 63 ii~il~~~~llv 74 (281)
+.++++++.+++
T Consensus 16 ~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 16 IGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHH
T ss_pred EeehhHHHHHHH
Confidence 333444444433
No 135
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=47.40 E-value=48 Score=20.51 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 044619 58 PLVIAIIGILASAFLLVSYYTI 79 (281)
Q Consensus 58 ~lviiii~il~~~~llv~~~~i 79 (281)
.++++++++.++++..+++..+
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y 32 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISY 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666555544443
No 136
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=46.71 E-value=14 Score=27.69 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=16.5
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHHHHH
Q 044619 46 EFLHDNSSPSFSPLVIAIIGILASAFL 72 (281)
Q Consensus 46 ~~~~~~s~~~f~~lviiii~il~~~~l 72 (281)
.|.++...-.+.|.+++++++++.+++
T Consensus 58 fY~dds~GlKV~P~~VLv~sl~Fi~~V 84 (96)
T 2wwb_C 58 FYTEDSPGLKVGPVPVLVMSLLFIASV 84 (96)
T ss_dssp ---CCSCCCCCSSCSHHHHHHHHHHHH
T ss_pred eeecCCCceEECCEEehhhHHHHHHHH
Confidence 345666667788888877776665443
No 137
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=46.70 E-value=2.4 Score=29.65 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=31.1
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHH----hcCCCCccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWL----KSHSNCPLCRANL 194 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl----~~~~~CP~CR~~l 194 (281)
...| ||......++..+..-.|..-||..|+.--- ...-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 4568 7988765554333334599999999986431 2234699997543
No 138
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=45.56 E-value=27 Score=23.08 Aligned_cols=30 Identities=7% Similarity=-0.105 Sum_probs=20.3
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 044619 46 EFLHDNSSPSFSPLVIAIIGILASAFLLVS 75 (281)
Q Consensus 46 ~~~~~~s~~~f~~lviiii~il~~~~llv~ 75 (281)
.|.++++.-..+|-.++++++++.++++++
T Consensus 18 yy~ee~~giKi~P~~Vl~~si~~i~~V~~L 47 (53)
T 1rh5_C 18 YMDETFSKIRVKPEHVIGVTVAFVIIEAIL 47 (53)
T ss_dssp ---CCCCSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCccccCCeehhhhHHHHHHHHHHH
Confidence 455667788899998888887776665544
No 139
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=45.17 E-value=4.2 Score=35.24 Aligned_cols=44 Identities=36% Similarity=0.812 Sum_probs=26.5
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHhc-----CCCCccccc
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS-----HSNCPLCRA 192 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~-----~~~CP~CR~ 192 (281)
.|.+|...=..+..+ ..-.|...||..|+.+=|.. .-.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL-~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCE-ECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeE-EcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 588887643333333 44469999999999854432 346999964
No 140
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=45.05 E-value=12 Score=27.32 Aligned_cols=36 Identities=22% Similarity=0.483 Sum_probs=25.4
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHH
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRW 180 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~W 180 (281)
+...|.+|...|..-..-.-...||++|+..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 356899999998754322233369999999996554
No 141
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=44.84 E-value=11 Score=29.21 Aligned_cols=35 Identities=20% Similarity=0.467 Sum_probs=24.5
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHH
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDR 179 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~ 179 (281)
+...|.+|...|..-..-.-.-.||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 35689999999975332222336999999999543
No 142
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=43.56 E-value=42 Score=18.77 Aligned_cols=14 Identities=21% Similarity=0.467 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHHH
Q 044619 58 PLVIAIIGILASAF 71 (281)
Q Consensus 58 ~lviiii~il~~~~ 71 (281)
|++..++-|++++.
T Consensus 3 piVA~~lLIviav~ 16 (26)
T 3j1r_A 3 PVIATLLLILIAVA 16 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 44444443333333
No 143
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=43.20 E-value=14 Score=26.81 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=25.0
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHH
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDR 179 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~ 179 (281)
+...|.+|...|..-..-.-.-.||++|+..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 45689999999875432222336999999999654
No 144
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=42.79 E-value=18 Score=25.43 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 044619 67 LASAFLLVSYYTILSKYCGN 86 (281)
Q Consensus 67 l~~~~llv~~~~i~~~~c~~ 86 (281)
++++++++.+++++.+.|+-
T Consensus 23 fA~vLfi~GI~iilS~KckC 42 (72)
T 2jo1_A 23 IAGILFILGILIVLSRRCRC 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccc
Confidence 34444555666666665543
No 145
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=42.26 E-value=13 Score=29.37 Aligned_cols=33 Identities=12% Similarity=0.323 Sum_probs=23.7
Q ss_pred CCCcceeeccccc-cCcceeecCCCCCccchHHH
Q 044619 145 EGTDCSVCLSEFE-EDESLRLLPKCNHAFHVACV 177 (281)
Q Consensus 145 ~~~~C~ICl~~~~-~~~~~~~lp~C~H~Fh~~Ci 177 (281)
+...|++|...|. ....-.+...|+|.+|..|=
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 4678999999994 32233444569999998883
No 146
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=41.33 E-value=3.7 Score=32.04 Aligned_cols=49 Identities=18% Similarity=0.441 Sum_probs=31.9
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANL 194 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l 194 (281)
...|..|...|..-..-.-.-.||.+|+..|..........|-.|...+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 4689999999875322222336999999999777665566788885544
No 147
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=40.90 E-value=11 Score=28.41 Aligned_cols=11 Identities=36% Similarity=1.087 Sum_probs=10.2
Q ss_pred cchHHHHHHHh
Q 044619 172 FHVACVDRWLK 182 (281)
Q Consensus 172 Fh~~Ci~~Wl~ 182 (281)
||..|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 148
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=40.85 E-value=11 Score=28.45 Aligned_cols=11 Identities=27% Similarity=1.041 Sum_probs=10.2
Q ss_pred cchHHHHHHHh
Q 044619 172 FHVACVDRWLK 182 (281)
Q Consensus 172 Fh~~Ci~~Wl~ 182 (281)
||+.|+.+|++
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 149
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=40.69 E-value=9.1 Score=27.15 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 044619 67 LASAFLLVSYYTILSKYCGNT 87 (281)
Q Consensus 67 l~~~~llv~~~~i~~~~c~~~ 87 (281)
++++++++.+++++.+.|+-+
T Consensus 26 fA~vLfi~GI~iilS~kcrCk 46 (74)
T 2zxe_G 26 VAAVLCVIGIIILLAGKCRCK 46 (74)
T ss_dssp HHHHHHHHHHHHHTTTC----
T ss_pred hHHHHHHHHHHHHHcCccccC
Confidence 334445555566666555544
No 150
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=40.59 E-value=15 Score=26.23 Aligned_cols=35 Identities=29% Similarity=0.590 Sum_probs=24.6
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHH
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDR 179 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~ 179 (281)
+...|.+|...|..-..-.-.-.||++|+..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 35689999999975332222336999999999654
No 151
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=40.57 E-value=12 Score=25.97 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 044619 68 ASAFLLVSYYTILSKYCGNT 87 (281)
Q Consensus 68 ~~~~llv~~~~i~~~~c~~~ 87 (281)
+++++++.+++++.+.|+-+
T Consensus 25 A~vLfi~GI~iilS~kcrCk 44 (67)
T 2jp3_A 25 GGLLCIAGIALALSGKCKCR 44 (67)
T ss_dssp HHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHcCccccc
Confidence 34444555556665555443
No 152
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=40.31 E-value=16 Score=26.20 Aligned_cols=36 Identities=14% Similarity=0.308 Sum_probs=25.2
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHH
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRW 180 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~W 180 (281)
+...|.+|...|..-..-.-.-.||++|+..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 456899999999754322222369999999996543
No 153
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=39.95 E-value=18 Score=25.17 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=23.0
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHH
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVD 178 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~ 178 (281)
...|.+|...|..-..-.-.-.||++|+..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 358999999987532222223699999999954
No 154
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=39.17 E-value=47 Score=20.31 Aligned_cols=28 Identities=7% Similarity=0.026 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044619 60 VIAIIGILASAFLLVSYYTILSKYCGNT 87 (281)
Q Consensus 60 viiii~il~~~~llv~~~~i~~~~c~~~ 87 (281)
--.+.++.+.+++-+.++..+..++.+|
T Consensus 10 ~GaIAGiVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCceeeeehHHHHHHHHHHHHHHHHeec
Confidence 4456666666666666555555555443
No 155
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=39.01 E-value=3.5 Score=31.17 Aligned_cols=45 Identities=24% Similarity=0.582 Sum_probs=29.1
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHhc----CCCCcccccc
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----HSNCPLCRAN 193 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~~ 193 (281)
.|.+|...-... .+..-..|...||..|+.+=|.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 577777653333 34444469999999999864432 3368888543
No 156
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=38.72 E-value=2.3 Score=32.57 Aligned_cols=46 Identities=24% Similarity=0.640 Sum_probs=30.4
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHhc----CCCCccccccc
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKS----HSNCPLCRANL 194 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~~l 194 (281)
.|.||...-..++.+ .--.|...||..|+.+=|.. .-.||.|+..+
T Consensus 60 ~C~~C~~~~~~~~ll-~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLL-FCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEE-ECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceE-EcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 688887754444444 44459999999999854432 23588886554
No 157
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=38.49 E-value=4.5 Score=27.34 Aligned_cols=42 Identities=33% Similarity=0.640 Sum_probs=26.0
Q ss_pred CCcceeeccccccCcceeecCC--CC-CccchHHHHHHHhc----CCCCccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPK--CN-HAFHVACVDRWLKS----HSNCPLCRA 192 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~Wl~~----~~~CP~CR~ 192 (281)
...| ||.... .+..+ .--. |. ..||..|+. |.. +-.||.|+.
T Consensus 10 ~~~C-~C~~~~-~g~mi-~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CCCEE-EeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4567 898763 24333 3334 44 689999997 432 336998854
No 158
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=37.45 E-value=18 Score=30.59 Aligned_cols=36 Identities=22% Similarity=0.506 Sum_probs=25.0
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHH
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDR 179 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~ 179 (281)
.+...|.+|...|..-..-.-...||++||..|...
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 345789999999875322222336999999999543
No 159
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.99 E-value=19 Score=25.67 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=22.8
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHH
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACV 177 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci 177 (281)
+...|.+|...|..-..---.-.||.+|+..|.
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 456899999998653211122359999999993
No 160
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=36.74 E-value=20 Score=26.26 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=13.0
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044619 46 EFLHDNSSPSFSPLVIAIIGILASAFLLVSYYTILSKY 83 (281)
Q Consensus 46 ~~~~~~s~~~f~~lviiii~il~~~~llv~~~~i~~~~ 83 (281)
-|.|++..-.+.|.+++++++++.+ +++++.++.|+
T Consensus 49 fYtdds~GlKV~P~~VLv~sl~FIa--~VilLHI~gK~ 84 (87)
T 2ww9_C 49 LYTDEANGFRVDSLVVLFLSVGFIF--SVIALHLLTKF 84 (87)
T ss_dssp ---------CCCHHHHHHHHHHHHH--HHHHC------
T ss_pred HhhcCCCceEEcCeeehhhHHHHHH--HHHHHHHhhhh
Confidence 3456666777888887776665533 34444555443
No 161
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.58 E-value=19 Score=30.64 Aligned_cols=37 Identities=16% Similarity=0.497 Sum_probs=25.9
Q ss_pred cCCCcceeeccccccCcceeecCCCCCccchHHHHHH
Q 044619 144 IEGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRW 180 (281)
Q Consensus 144 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~W 180 (281)
.....|.+|...|..-..-.-...||++||..|-..+
T Consensus 162 ~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred ccCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 3456899999998754322223369999999996543
No 162
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=36.46 E-value=5.3 Score=27.26 Aligned_cols=45 Identities=33% Similarity=0.594 Sum_probs=26.7
Q ss_pred CCCcceeeccccccCcceeecCC--CC-CccchHHHHHHH--hcCCCCccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPK--CN-HAFHVACVDRWL--KSHSNCPLCRA 192 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~Wl--~~~~~CP~CR~ 192 (281)
+...| ||.... .++.+ .--. |. .-||..|+.--- ..+-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g~MI-~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGEMI-GCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CCCee-eeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34567 898753 34433 3334 44 799999987210 12346999964
No 163
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=35.00 E-value=5.7 Score=26.78 Aligned_cols=43 Identities=37% Similarity=0.661 Sum_probs=26.9
Q ss_pred CCCcceeeccccccCcceeecCC--CC-CccchHHHHHHHhc----CCCCccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPK--CN-HAFHVACVDRWLKS----HSNCPLCRA 192 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~Wl~~----~~~CP~CR~ 192 (281)
+...| ||.... .++.+ .--. |. .-||..|+. |.. +-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g~mi-~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGEMI-GCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCCee-EeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34567 898764 34433 3334 65 699999997 322 336999864
No 164
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=34.24 E-value=15 Score=21.25 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=19.9
Q ss_pred CcceeeccccccCcceeecCCCCCccchHHH
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHAFHVACV 177 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci 177 (281)
..|+.|-...-..+.+. .-|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE---ECCeEecccCC
Confidence 47888888776655554 25788998883
No 165
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=32.59 E-value=26 Score=24.35 Aligned_cols=31 Identities=19% Similarity=0.472 Sum_probs=24.3
Q ss_pred CCCcceeeccccccCcceeecCCC-CCccchHHHHHH
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKC-NHAFHVACVDRW 180 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C-~H~Fh~~Ci~~W 180 (281)
+..-|.||.++ ..++.+. | +-+||..|..+-
T Consensus 7 e~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 45679999987 4577775 9 789999997763
No 166
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=31.42 E-value=51 Score=20.00 Aligned_cols=19 Identities=16% Similarity=0.527 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044619 62 AIIGILASAFLLVSYYTIL 80 (281)
Q Consensus 62 iii~il~~~~llv~~~~i~ 80 (281)
+++++++++++.+...++.
T Consensus 7 ~ivalivalIiaIVVWtiv 25 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIV 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 167
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=31.06 E-value=10 Score=35.04 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=0.0
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHh-------cCCCCccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLK-------SHSNCPLCRANL 194 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~-------~~~~CP~CR~~l 194 (281)
+...|.+|...|..-..-.-...||++||..|-..++. ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 35689999999874322222236999999999876642 123576665443
No 168
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=30.10 E-value=22 Score=23.63 Aligned_cols=41 Identities=20% Similarity=0.455 Sum_probs=30.2
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
...|+.|-..+...+.+... -+..||..|+ .|-.|..+|..
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 56899999998876654322 5678998885 58888888754
No 169
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=29.95 E-value=35 Score=27.79 Aligned_cols=43 Identities=26% Similarity=0.622 Sum_probs=30.3
Q ss_pred CCCcceeeccccccCcceeecC--CCCCccchHHHHHHHhc----------CCCCcccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLP--KCNHAFHVACVDRWLKS----------HSNCPLCR 191 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~Fh~~Ci~~Wl~~----------~~~CP~CR 191 (281)
....|.||-+- ..+.... .|...|+..||+.++.. .-.|=+|.
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 35689999753 3555544 59999999999998732 23688884
No 170
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=29.76 E-value=25 Score=21.34 Aligned_cols=8 Identities=13% Similarity=0.613 Sum_probs=3.9
Q ss_pred hHHHHHHH
Q 044619 58 PLVIAIIG 65 (281)
Q Consensus 58 ~lviiii~ 65 (281)
.+...++|
T Consensus 9 sIaagVvg 16 (35)
T 1iij_A 9 FIIATVVG 16 (35)
T ss_dssp HHHHHHHH
T ss_pred EeHHHHHH
Confidence 34445555
No 171
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=28.89 E-value=7.7 Score=25.22 Aligned_cols=41 Identities=20% Similarity=0.491 Sum_probs=25.7
Q ss_pred eeccccccCcceeecCCCCCccchHHHHHHH---hcCCCCccccc
Q 044619 151 VCLSEFEEDESLRLLPKCNHAFHVACVDRWL---KSHSNCPLCRA 192 (281)
Q Consensus 151 ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl---~~~~~CP~CR~ 192 (281)
||......+..|.-- .|+.-||..|+.--- ...-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd-~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECT-TTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcC-CCCccccccccCCCcccCCCcEECcCCCC
Confidence 576655433444444 599999999986322 13346888864
No 172
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.85 E-value=49 Score=21.98 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=28.4
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
...|+.|-..+...+.+. . .-+..||..|+ .|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~-a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL-E-YGGQTWHEHCF--------LCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE-C-STTCCEETTTC--------BCTTTCCBTT
T ss_pred CCCCccCCCccccCccEE-E-ECccccCcccC--------eECCCCCcCC
Confidence 458999999888643332 2 25788998884 5888888774
No 173
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=28.52 E-value=96 Score=18.80 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=10.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 044619 56 FSPLVIAIIGILASAFLLVSYYT 78 (281)
Q Consensus 56 f~~lviiii~il~~~~llv~~~~ 78 (281)
...++..++.+++...+|+.+|+
T Consensus 5 ~l~fiAt~Lfi~iPt~FLlilYv 27 (36)
T 3arc_M 5 QLGLIATALFVLVPSVFLIILYV 27 (36)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555554444444443
No 174
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.44 E-value=50 Score=22.91 Aligned_cols=41 Identities=32% Similarity=0.632 Sum_probs=30.3
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
....|+.|-..+...+.+.. -+..||..| ..|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCC
Confidence 45689999998876655542 567899888 358888887754
No 175
>1sop_A Mini-collagen; collagen oxidative refolding, structural protein; NMR {Synthetic} SCOP: g.71.1.1 PDB: 1sp7_A
Probab=28.16 E-value=18 Score=20.21 Aligned_cols=10 Identities=50% Similarity=1.437 Sum_probs=7.8
Q ss_pred ccccCCCcee
Q 044619 25 CSLYCPQWCY 34 (281)
Q Consensus 25 ~~~~~~~~~~ 34 (281)
|-++||+.|-
T Consensus 11 CvpsCp~yCC 20 (26)
T 1sop_A 11 CVPTCPQYCC 20 (26)
T ss_dssp CCTTSCSTTC
T ss_pred ccCCCCcccc
Confidence 7888888763
No 176
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.16 E-value=46 Score=22.16 Aligned_cols=40 Identities=30% Similarity=0.637 Sum_probs=26.1
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
...|+.|-..+...+.+.. .-+..||..|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV--ALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE--CSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEE--ECCCeEcccCC--------cccccCCcCC
Confidence 4578888887765332222 25678888773 4788887773
No 177
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.74 E-value=49 Score=22.31 Aligned_cols=42 Identities=19% Similarity=0.445 Sum_probs=29.6
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
....|+-|-..+...+.+... -+..||..|+ .|-.|+.+|..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCC
Confidence 356899999998754444222 5678998884 58888887753
No 178
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=27.20 E-value=45 Score=31.02 Aligned_cols=44 Identities=32% Similarity=0.656 Sum_probs=31.5
Q ss_pred CCCcceeeccccccCcceeecC--CCCCccchHHHHHHHh----------cCCCCccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLP--KCNHAFHVACVDRWLK----------SHSNCPLCRA 192 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~Fh~~Ci~~Wl~----------~~~~CP~CR~ 192 (281)
....|.+|-+- ..+.... .|...||..||+.++- ....|=+|.-
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 35689999753 3444544 6999999999999971 2447888853
No 179
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.18 E-value=49 Score=21.98 Aligned_cols=40 Identities=15% Similarity=0.386 Sum_probs=28.2
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
...|+.|-..+...+.+... -+..||..|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIG 44 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCC
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccC
Confidence 45899999988875433222 5678998874 5888887774
No 180
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=26.80 E-value=21 Score=24.16 Aligned_cols=42 Identities=29% Similarity=0.719 Sum_probs=28.6
Q ss_pred CcceeeccccccCcceeecCCCCCccchHHHHHHH-hcCCCCccc
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWL-KSHSNCPLC 190 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl-~~~~~CP~C 190 (281)
..|-.|+..|.+. .+..-++|++.|+.+| +..+ ..-.+||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 4599999988643 2344678999999999 3322 233368877
No 181
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=25.48 E-value=58 Score=30.11 Aligned_cols=46 Identities=15% Similarity=0.455 Sum_probs=29.1
Q ss_pred CcceeeccccccCcceeecCCCCCc--cchHHHHHHHhc--CCCCcccccccc
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHA--FHVACVDRWLKS--HSNCPLCRANLF 195 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~--Fh~~Ci~~Wl~~--~~~CP~CR~~l~ 195 (281)
..|++=+..|.. .++-.. |.|+ |-..-+...... ...||+|.+.+.
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCccccccc--cCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 468887777665 355554 9998 544433333333 347999988773
No 182
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=25.01 E-value=27 Score=23.83 Aligned_cols=35 Identities=26% Similarity=0.593 Sum_probs=17.3
Q ss_pred ceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccc
Q 044619 149 CSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANL 194 (281)
Q Consensus 149 C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l 194 (281)
|+.|-..+..++.+.. -+..||..|+ .|-.|+.+|
T Consensus 3 C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L 37 (76)
T 1iml_A 3 CPKCDKEVYFAERVTS---LGKDWHRPCL--------KCEKCGKTL 37 (76)
T ss_dssp CTTTSSBCCGGGEEEE---TTEEEETTTC--------BCTTTCCBC
T ss_pred CCCCCCEEECceEEEE---CCccccCCCC--------CccccCccC
Confidence 5555555554433322 3455665552 355565555
No 183
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.53 E-value=55 Score=22.38 Aligned_cols=40 Identities=15% Similarity=0.422 Sum_probs=29.1
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
...|+.|-..+..++.+.. .-+..||..|+ .|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE--YKGTVWHKDCF--------TCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE--CSSCEEETTTC--------CCSSSCCCCT
T ss_pred CCcCccCCcccccCceEEE--ECccccccccC--------chhhCCCccC
Confidence 4689999999886555322 25778998884 5888888774
No 184
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.53 E-value=41 Score=22.79 Aligned_cols=39 Identities=21% Similarity=0.492 Sum_probs=30.0
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
...|+.|-..+..++.+.. -+..||..|+ .|-.|+.+|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccC
Confidence 4689999999887665543 5788998884 5889988885
No 185
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=24.19 E-value=63 Score=29.73 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=29.9
Q ss_pred CcceeeccccccCcceeecCCCCCc--cchHHHHHHHhc--CCCCcccccccc
Q 044619 147 TDCSVCLSEFEEDESLRLLPKCNHA--FHVACVDRWLKS--HSNCPLCRANLF 195 (281)
Q Consensus 147 ~~C~ICl~~~~~~~~~~~lp~C~H~--Fh~~Ci~~Wl~~--~~~CP~CR~~l~ 195 (281)
..|++=+..|.. .++-.. |.|. |-..-+...... ...||+|.+.+.
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 468887777665 355554 9998 554444443333 347999998874
No 186
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=23.88 E-value=1.3e+02 Score=18.41 Aligned_cols=28 Identities=7% Similarity=0.183 Sum_probs=19.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 044619 53 SPSFSPLVIAIIGILASAFLLVSYYTIL 80 (281)
Q Consensus 53 ~~~f~~lviiii~il~~~~llv~~~~i~ 80 (281)
..+++.+++-++|++..++.+.+++..+
T Consensus 7 a~~LPsI~VPlVglvfPai~Mallf~yI 34 (38)
T 1jb0_I 7 ASFLPWIFIPVVCWLMPTVVMGLLFLYI 34 (38)
T ss_dssp TTTHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hhhCChhhHhHHHHHHHHHHHHHHHHhh
Confidence 3457777888888888777777666554
No 187
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.70 E-value=11 Score=28.59 Aligned_cols=24 Identities=29% Similarity=0.757 Sum_probs=15.4
Q ss_pred CCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 167 KCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 167 ~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
+||+.|. .=+.....||.|+..-.
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 5999991 11223457999987654
No 188
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.41 E-value=61 Score=22.43 Aligned_cols=40 Identities=28% Similarity=0.620 Sum_probs=30.2
Q ss_pred CCCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 145 EGTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 145 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
....|+-|-..+..++.+.. -+..||..| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 35689999999887665544 467899888 45888988874
No 189
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=23.09 E-value=16 Score=25.50 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=14.4
Q ss_pred HHHHhcCCCCccccccccc
Q 044619 178 DRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 178 ~~Wl~~~~~CP~CR~~l~~ 196 (281)
++||..--.||.|+.+|..
T Consensus 2 d~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKL 20 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEE
T ss_pred ChHHHhheeCCCCCCcCeE
Confidence 4567777789999998864
No 190
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.20 E-value=60 Score=21.59 Aligned_cols=40 Identities=20% Similarity=0.495 Sum_probs=28.1
Q ss_pred CCcceeecccccc--CcceeecCCCCCccchHHHHHHHhcCCCCcccccccc
Q 044619 146 GTDCSVCLSEFEE--DESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLF 195 (281)
Q Consensus 146 ~~~C~ICl~~~~~--~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 195 (281)
...|+-|-..+.. .+.+. . .-+..||..|+ .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~-~-a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYI-S-FEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCE-E-CSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceE-E-ECCcccCcccC--------EeccCCCcCC
Confidence 4579999988875 22332 2 26788998884 5888988874
No 191
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=21.64 E-value=7.9 Score=27.62 Aligned_cols=19 Identities=26% Similarity=0.788 Sum_probs=15.3
Q ss_pred CCCCccchHHHHHHHhcCCCC
Q 044619 167 KCNHAFHVACVDRWLKSHSNC 187 (281)
Q Consensus 167 ~C~H~Fh~~Ci~~Wl~~~~~C 187 (281)
.|+|.|+..|-..|-. .+|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 6999999999999843 445
No 192
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=20.91 E-value=28 Score=20.91 Aligned_cols=10 Identities=40% Similarity=0.793 Sum_probs=7.3
Q ss_pred CCcccccccc
Q 044619 186 NCPLCRANLF 195 (281)
Q Consensus 186 ~CP~CR~~l~ 195 (281)
.||+|.+.+.
T Consensus 7 iCP~C~~~l~ 16 (34)
T 3mjh_B 7 ICPQCMKSLG 16 (34)
T ss_dssp ECTTTCCEES
T ss_pred CCcHHHHHcC
Confidence 5888877774
No 193
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=20.84 E-value=1.2e+02 Score=18.36 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 044619 65 GILASAFLLVSYYTILSKYCGN 86 (281)
Q Consensus 65 ~il~~~~llv~~~~i~~~~c~~ 86 (281)
||+++.+.+.+.-.++.-|.+.
T Consensus 8 GIVlGlipvtlaGLfv~Ay~Qy 29 (37)
T 1q90_G 8 GIVLGLVPVTIAGLFVTAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 194
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=20.59 E-value=46 Score=25.05 Aligned_cols=37 Identities=19% Similarity=0.553 Sum_probs=19.8
Q ss_pred cceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccc
Q 044619 148 DCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANL 194 (281)
Q Consensus 148 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l 194 (281)
.|+.|-..+...+.+.. .-++.||..|+ .|-.|.+.|
T Consensus 10 ~C~~C~~~I~~~e~~~~--a~~~~~H~~CF--------~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR--VKDKVYHLECF--------KCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCC--CSSCCCCTTTC--------BCTTTCCBC
T ss_pred cccCCCCeecCCceEEE--ECCcccccccC--------ccccCCCCC
Confidence 57777766664333211 24566676663 355565555
No 195
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=20.41 E-value=55 Score=21.65 Aligned_cols=17 Identities=35% Similarity=0.694 Sum_probs=11.6
Q ss_pred CcCCCcceeeccccccC
Q 044619 143 LIEGTDCSVCLSEFEED 159 (281)
Q Consensus 143 ~~~~~~C~ICl~~~~~~ 159 (281)
..+...|++|...+...
T Consensus 7 lL~iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 7 LLEILACPACHAPLEER 23 (56)
T ss_dssp CTTSCCCSSSCSCEEEE
T ss_pred HHhheeCCCCCCcceec
Confidence 44567888888876543
No 196
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=20.20 E-value=20 Score=34.41 Aligned_cols=47 Identities=23% Similarity=0.460 Sum_probs=30.7
Q ss_pred CCcceeeccccc-cCcceeecCCCCCccchHHHHHHHh-----cCCCCccccccc
Q 044619 146 GTDCSVCLSEFE-EDESLRLLPKCNHAFHVACVDRWLK-----SHSNCPLCRANL 194 (281)
Q Consensus 146 ~~~C~ICl~~~~-~~~~~~~lp~C~H~Fh~~Ci~~Wl~-----~~~~CP~CR~~l 194 (281)
...| ||...+. .+..+..- .|.--||..|+.---. ..-.||.|+..-
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECD-ICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBT-TTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEcc-CCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 3456 8988765 33345444 5999999999853221 234799997543
No 197
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.06 E-value=60 Score=21.47 Aligned_cols=39 Identities=23% Similarity=0.553 Sum_probs=27.4
Q ss_pred CCcceeeccccccCcceeecCCCCCccchHHHHHHHhcCCCCccccccccc
Q 044619 146 GTDCSVCLSEFEEDESLRLLPKCNHAFHVACVDRWLKSHSNCPLCRANLFL 196 (281)
Q Consensus 146 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 196 (281)
...|..|-..+.. +.+.. -+..||..|+ .|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTTS--------BCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccCC--------EeCCCCCcCCC
Confidence 4579999888773 33332 5678998884 58888887753
Done!