Query 044623
Match_columns 486
No_of_seqs 223 out of 1363
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 08:35:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hd1_A Squalene synthase HPNC; 100.0 2.7E-63 9.3E-68 499.7 30.3 281 188-476 8-288 (294)
2 3acx_A Dehydrosqualene synthas 100.0 9.5E-62 3.2E-66 487.6 34.1 275 190-474 9-290 (293)
3 3vj8_A Squalene synthase; farn 100.0 6.1E-53 2.1E-57 433.1 20.1 280 189-470 7-301 (343)
4 3rmg_A Octaprenyl-diphosphate 96.0 0.2 6.9E-06 50.8 16.7 139 287-425 141-308 (334)
5 3nf2_A Putative polyprenyl syn 95.9 0.09 3.1E-06 53.8 13.6 138 287-425 151-325 (352)
6 3kb9_A EPI-isozizaene synthase 95.5 0.99 3.4E-05 46.1 19.8 193 217-419 102-315 (382)
7 2q80_A Geranylgeranyl pyrophos 95.3 0.49 1.7E-05 47.2 16.1 136 287-425 119-282 (301)
8 1wy0_A Geranylgeranyl pyrophos 95.2 0.84 2.9E-05 46.1 17.9 136 288-424 146-323 (342)
9 4f62_A Geranyltranstransferase 95.1 0.11 3.9E-06 52.3 10.9 125 290-425 152-279 (317)
10 3ts7_A Geranyltranstransferase 95.0 0.27 9.4E-06 49.7 13.3 126 289-425 158-286 (324)
11 2e8v_A Geranylgeranyl pyrophos 94.9 0.13 4.4E-06 52.2 10.6 90 287-377 139-245 (340)
12 4dhd_A Polyprenyl synthetase; 94.8 0.18 6E-06 51.7 11.6 137 288-425 141-321 (358)
13 3lom_A Geranyltranstransferase 94.8 0.2 6.7E-06 50.5 11.7 125 289-425 158-287 (313)
14 3p8r_A Geranyltranstransferase 94.8 0.22 7.5E-06 49.8 11.9 126 289-425 158-286 (302)
15 3lmd_A Geranylgeranyl pyrophos 94.5 0.24 8.2E-06 50.8 11.8 138 287-425 168-334 (360)
16 3lk5_A Geranylgeranyl pyrophos 94.4 1.7 5.7E-05 44.8 17.9 134 289-424 185-353 (380)
17 3pko_A Geranylgeranyl pyrophos 94.4 0.46 1.6E-05 48.1 13.4 138 287-425 151-316 (334)
18 3apz_A Geranyl diphosphate syn 94.4 1.5 5.2E-05 44.3 17.3 138 288-425 162-324 (348)
19 3p8l_A Geranyltranstransferase 94.4 0.97 3.3E-05 45.2 15.6 124 289-423 156-281 (302)
20 3uca_A Geranyltranstransferase 94.2 0.26 8.9E-06 49.9 11.1 115 289-425 180-308 (324)
21 3oyr_A Trans-isoprenyl diphosp 94.2 0.7 2.4E-05 47.0 14.2 138 288-425 160-327 (345)
22 3mzv_A Decaprenyl diphosphate 94.1 0.56 1.9E-05 47.6 13.4 138 288-425 148-315 (341)
23 1rtr_A Geranyltranstransferase 94.1 0.36 1.2E-05 48.2 11.7 124 289-424 148-274 (301)
24 1ps1_A Pentalenene synthase; a 94.1 5 0.00017 39.5 21.3 191 218-419 63-273 (337)
25 3aqb_B Component B of hexapren 93.9 0.74 2.5E-05 46.2 13.8 138 288-425 139-307 (325)
26 3lsn_A Geranyltranstransferase 93.7 0.3 1E-05 48.9 10.4 124 290-425 153-280 (304)
27 1yhl_A Farnesyl pyrophosphate 93.4 0.91 3.1E-05 46.3 13.6 135 288-425 160-342 (362)
28 3tc1_A Octaprenyl pyrophosphat 93.3 0.56 1.9E-05 47.2 11.6 135 287-424 130-292 (315)
29 1v4e_A Octoprenyl-diphosphate 93.0 0.33 1.1E-05 48.4 9.2 88 288-377 136-234 (299)
30 2her_A Fragment, farnesyl pyro 92.8 1.1 3.9E-05 45.9 13.1 137 287-425 176-338 (368)
31 1wmw_A Geranylgeranyl diphosph 92.6 1.2 4.2E-05 44.8 13.0 133 287-424 138-311 (330)
32 2qis_A Farnesyl pyrophosphate 92.6 0.91 3.1E-05 46.6 12.1 135 288-425 185-356 (374)
33 1uby_A FPS, farnesyl diphospha 92.4 0.66 2.3E-05 47.5 10.8 135 288-425 178-349 (367)
34 3ipi_A Geranyltranstransferase 92.0 0.72 2.4E-05 46.0 10.2 124 288-425 136-266 (295)
35 2azj_A Geranylgeranyl pyrophos 91.5 2.4 8.1E-05 42.0 13.3 111 288-424 144-261 (289)
36 2h8o_A Geranyltranstransferase 91.4 0.52 1.8E-05 47.8 8.5 124 289-424 192-318 (335)
37 3pde_A Farnesyl-diphosphate sy 91.2 1 3.6E-05 45.1 10.5 124 289-423 155-280 (309)
38 1di1_A Aristolochene synthase; 91.2 10 0.00035 36.4 17.4 185 218-417 59-265 (300)
39 2j1p_A Geranylgeranyl pyrophos 90.8 3 0.0001 41.3 13.3 113 290-427 161-278 (293)
40 2ihi_A Pyrophosphate synthase; 90.8 1.9 6.6E-05 44.6 12.3 136 288-424 187-377 (395)
41 1rqj_A Geranyltranstransferase 90.3 0.8 2.7E-05 45.5 8.6 124 289-424 152-279 (299)
42 3m0g_A Farnesyl diphosphate sy 89.7 0.22 7.7E-06 49.7 4.0 112 289-425 147-273 (297)
43 1n1b_A (+)-bornyl diphosphate 89.2 10 0.00034 40.9 16.8 178 221-416 288-498 (549)
44 2ftz_A Geranyltranstransferase 88.2 3.3 0.00011 40.9 11.2 120 288-424 143-267 (284)
45 3dyh_A Farnesyl pyrophosphate 87.3 3.4 0.00011 42.7 11.1 136 288-425 188-370 (390)
46 3mav_A Farnesyl pyrophosphate 83.6 9.2 0.00031 39.3 12.3 137 288-425 187-378 (395)
47 3bny_A Aristolochene synthase; 82.7 36 0.0012 32.9 19.2 184 218-416 73-278 (320)
48 3v1v_A 2-MIB synthase, 2-methy 82.6 13 0.00043 38.9 13.0 191 218-417 173-391 (433)
49 2ong_A 4S-limonene synthase; m 82.1 46 0.0016 35.6 17.4 182 221-415 282-490 (543)
50 3llw_A Geranyltranstransferase 81.8 8.4 0.00029 38.5 10.8 122 289-423 159-283 (311)
51 2q58_A Fragment, farnesyl pyro 81.5 11 0.00039 38.3 11.9 138 287-425 176-338 (368)
52 3npk_A Geranyltranstransferase 81.5 12 0.0004 37.1 11.7 124 288-425 144-270 (291)
53 2j5c_A 1,8-cineole synthase; t 78.1 39 0.0013 36.4 15.3 194 212-424 297-525 (569)
54 3n0f_A Isoprene synthase; terp 76.5 88 0.003 33.7 19.4 188 210-415 277-499 (555)
55 3kra_B Geranyl diphosphate syn 76.1 5.8 0.0002 38.9 7.4 69 289-357 149-219 (274)
56 3g4d_A (+)-delta-cadinene synt 72.2 1.1E+02 0.0038 32.9 18.5 187 210-415 279-501 (554)
57 3m00_A Aristolochene synthase; 60.1 1.9E+02 0.0064 31.1 20.4 191 210-415 275-496 (550)
58 1yyq_A Trichodiene synthase; t 59.0 1.6E+02 0.0054 29.9 20.3 160 215-387 80-257 (374)
59 3qkc_B Geranyl diphosphate syn 59.0 16 0.00054 35.7 6.5 68 289-356 151-219 (273)
60 3sdr_A Alpha-bisabolene syntha 42.2 4.2E+02 0.014 29.8 15.5 107 212-322 540-671 (817)
61 3s9v_A Abietadiene synthase, c 31.2 6E+02 0.02 28.4 21.3 188 211-414 511-732 (785)
62 2l66_A SSO7C4, transcriptional 21.6 41 0.0014 24.4 1.8 22 367-388 10-31 (53)
No 1
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=2.7e-63 Score=499.71 Aligned_cols=281 Identities=26% Similarity=0.370 Sum_probs=246.2
Q ss_pred hhhHHHHHHHHHHHHhhcCcchHHHHhcCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcHHHHHHHHHHHHHHHcCCCC
Q 044623 188 LSLLSEAYDRCGEVCAEYAKTFYLGTLLMTSERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGRPF 267 (486)
Q Consensus 188 ~~~l~~a~~~C~evlr~~srSFyla~llLP~e~R~ai~ALYAF~R~lDdIvDd~~~~~i~~~~L~~Wrd~Le~~f~G~p~ 267 (486)
+..++++|++|.++++++|+|||+++++||++.|+++++||+|||.+|||+|++.. .+..+|+||++.++.++.|.+.
T Consensus 8 p~~l~~~y~~C~~i~~~~~~sF~~a~~~lp~~~R~~~~alYaf~R~~Ddi~D~~~~--~~~~~L~~~~~~l~~~~~g~~~ 85 (294)
T 4hd1_A 8 PVELRGDFEVCRRLTRSHYENFSVVSLFVPRHLRPHFYSVYAFCRGVDDLGDEFAG--DRMAALDAYEEELRRAFAGEAT 85 (294)
T ss_dssp CGGGHHHHHHHHHHHHHHCTTHHHHTTTCCTTTHHHHHHHHHHHHHHHHTSTTCCS--CHHHHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHHHhCCcHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccCCCh--hHHHHHHHHHHHHHHHhcCCCC
Confidence 45789999999999999999999999999999999999999999999999998653 3456899999999999999999
Q ss_pred CHHHHHHHHHHHhCCCChHHHHHHHHHHHhhccCCCCCCHHHHHHHHHhhhhHHHHHHHhhhCCCCCCccchhhHHHHHH
Q 044623 268 DMLDAALSDTVTKFPVDIQPFRDMIEGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAAL 347 (486)
Q Consensus 268 ~pv~~aL~~~v~~~~Lp~~~l~~mIegm~~DL~~~~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~~~~~a~~e~~~~~A~ 347 (486)
||+..+|.+++++|+||.++|.+||+||++|+.+.+|+|++||+.|||+|||+||+|++++||..++ ...+.|.
T Consensus 86 ~pv~~al~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~~~~------~~~~~A~ 159 (294)
T 4hd1_A 86 TPAFRALQFTIATCNLPMEPFLRLIEANRRDQRKHTYDTWEDLRDYCRYSADPVGRLVLGIFGCLDD------ERARLSD 159 (294)
T ss_dssp SHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHCSBCCSHHHHHHHHHHHTHHHHHHHHHHTTCCSH------HHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccchHHHHHHHHhCCCCH------HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997542 3567899
Q ss_pred HHHHHHHHHHHHHhHHHHHHcCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCc
Q 044623 348 ALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEASR 427 (486)
Q Consensus 348 ~LG~ALQLTNILRDv~EDl~rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp~~sr 427 (486)
+||+|+|+||||||++||+++||+|||.|+|++||++++||..+..+++++.++.+++.+|+.||++|..++..||++++
T Consensus 160 ~lG~AlQltNilRDv~eD~~~gR~YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~r 239 (294)
T 4hd1_A 160 ATCTALQVANHMQDIDRDLALGRIYVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPRLA 239 (294)
T ss_dssp HHHHHHHHHHHHHTHHHHHHTTCBCSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHHHH
T ss_pred HHHHHHHHHHHHHhchhhhccCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCCCCCCCccCCHHHHHHHHHHHHHhhhc
Q 044623 428 WPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLL 476 (486)
Q Consensus 428 ~pv~a~~~ly~~iL~~Ie~~~ydvf~~Rv~vsk~~Kl~ll~~a~~~~~~ 476 (486)
+++.++..+|+.||++|+++||++|++|+++++++|++++++++....+
T Consensus 240 ~~~~~~~~~y~~il~~i~~~~~~~~~~R~~vs~~~Kl~l~~~al~~~~~ 288 (294)
T 4hd1_A 240 RQLKLYRLGGEAILAAIRRQGYNPFAGRPVVSGKQKLRIALSVLAGGAK 288 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCccCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999877543
No 2
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=100.00 E-value=9.5e-62 Score=487.65 Aligned_cols=275 Identities=25% Similarity=0.417 Sum_probs=261.5
Q ss_pred hHHHHHHHHHHHHhhcCcchHHHHhcCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcHHHHHHHHHHHHHHHcCC----
Q 044623 190 LLSEAYDRCGEVCAEYAKTFYLGTLLMTSERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGR---- 265 (486)
Q Consensus 190 ~l~~a~~~C~evlr~~srSFyla~llLP~e~R~ai~ALYAF~R~lDdIvDd~~~~~i~~~~L~~Wrd~Le~~f~G~---- 265 (486)
.+++++++|.++++++|+|||+++++||+++|+++++||+|||++|||+|++..+. . |+||++.++.++.|.
T Consensus 9 ~~~~~~~~c~~~~~~~s~sF~~a~~~Lp~~~R~av~alYaf~R~~Ddi~D~~~~~~---~-L~~w~~~l~~~~~g~~~~~ 84 (293)
T 3acx_A 9 MMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQ---F-LNQIKEDIQSIEKYPYEYH 84 (293)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHGGGGTSSTH---H-HHHHHHHHHHHHHCTTSCC
T ss_pred hhHHHHHHHHHHHhccCCcHHHHHHhCCHHHHHHHHHHHHHHHHHhhHhccCCCHH---H-HHHHHHHHHHHhCCCCccc
Confidence 47889999999999999999999999999999999999999999999999877543 2 999999999999887
Q ss_pred ---CCCHHHHHHHHHHHhCCCChHHHHHHHHHHHhhccCCCCCCHHHHHHHHHhhhhHHHHHHHhhhCCCCCCccchhhH
Q 044623 266 ---PFDMLDAALSDTVTKFPVDIQPFRDMIEGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESV 342 (486)
Q Consensus 266 ---p~~pv~~aL~~~v~~~~Lp~~~l~~mIegm~~DL~~~~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~~~~~a~~e~~ 342 (486)
+.||+..+|.+++++|++|.++|.+||+||++|+.+.+|+|++||+.|||+|||+||+|+++++|..+. +..
T Consensus 85 ~~~~~~pv~~al~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~~-----~~~ 159 (293)
T 3acx_A 85 HFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHET-----HQT 159 (293)
T ss_dssp CCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSCC-----HHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCCc-----HHH
Confidence 458999999999999999999999999999999999999999999999999999999999999987541 246
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHcCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044623 343 YNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTEL 422 (486)
Q Consensus 343 ~~~A~~LG~ALQLTNILRDv~EDl~rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~L 422 (486)
.+.|.+||.|+|+||||||++||+++||+|||.|+|++||++++||..|..++++++++.+++.+|+.||++|+.++..|
T Consensus 160 ~~~A~~lG~AlQltNilRDv~eD~~~gR~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~l 239 (293)
T 3acx_A 160 YDVARRLGESLQLINILRDVGEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVF 239 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHTTCCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHCCCCCCCCCccCCHHHHHHHHHHHHHhh
Q 044623 423 SEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKS 474 (486)
Q Consensus 423 p~~sr~pv~a~~~ly~~iL~~Ie~~~ydvf~~Rv~vsk~~Kl~ll~~a~~~~ 474 (486)
|+++++++.++..+|..||++|+++||+ |++|+++++++|++++++++.+.
T Consensus 240 p~~~r~~~~~~~~~~~~iL~~i~~~~~~-~~~r~~v~~~~k~~~~~~a~~~~ 290 (293)
T 3acx_A 240 SIEAQPIIELAARIYIEILDEVRQANYT-LHERVFVEKRKKAKLFHEINSKY 290 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTTTC-SSSCCCCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCceeCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999 99999999999999999998864
No 3
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=100.00 E-value=6.1e-53 Score=433.12 Aligned_cols=280 Identities=20% Similarity=0.162 Sum_probs=238.2
Q ss_pred hhHHHHHHHHHHHHhhcCcchHHHHhcCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCC-cHHHHHHHHHHHHHH---HcC
Q 044623 189 SLLSEAYDRCGEVCAEYAKTFYLGTLLMTSERRRAIWAIYVWCRRTDELVDGPNASHI-TPTALDRWESRLEDL---FRG 264 (486)
Q Consensus 189 ~~l~~a~~~C~evlr~~srSFyla~llLP~e~R~ai~ALYAF~R~lDdIvDd~~~~~i-~~~~L~~Wrd~Le~~---f~G 264 (486)
..++++|++|.++++++|+|||+++++||+++|+++++||+|||.+|||+|++..+.. +...|+||++.++.. |.|
T Consensus 7 ~~l~~~~~~C~~~l~~~srsF~la~~lLp~~~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~ 86 (343)
T 3vj8_A 7 DSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFME 86 (343)
T ss_dssp -CCCHHHHHHHHHHHHHHGGGHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCC
T ss_pred ccchHHHHHHHHHHHhcCCcHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhcC
Confidence 4578999999999999999999999999999999999999999999999999875433 346899999988752 444
Q ss_pred CC--CCHHHHHHHHHHHhC-CCC-------hHHHHHHHHHHHhhccCCCCCCHHHHHHHHHhhhhHHHHHHHhhhCCCCC
Q 044623 265 RP--FDMLDAALSDTVTKF-PVD-------IQPFRDMIEGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPD 334 (486)
Q Consensus 265 ~p--~~pv~~aL~~~v~~~-~Lp-------~~~l~~mIegm~~DL~~~~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~~~ 334 (486)
.. .+++...+..++..| .++ ...+.+|++||++|+. .+|+|++||+.|||+|||+||+|+++++|..+.
T Consensus 87 ~~~~~~~ll~~~p~v~~~f~~l~~~~~~~i~~~~~~m~~gm~~dl~-~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~ 165 (343)
T 3vj8_A 87 SKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLD-KHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEF 165 (343)
T ss_dssp CCSTTTHHHHTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHGGG-CCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTS
T ss_pred CChhhHHHHhcCcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCC
Confidence 32 234444444344332 222 2345679999999997 789999999999999999999999999987542
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHH
Q 044623 335 SQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDM 414 (486)
Q Consensus 335 ~~a~~e~~~~~A~~LG~ALQLTNILRDv~EDl~rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~ 414 (486)
.....+...+.|.+||.|+|+||||||++||+++||+|||.|+|++||++++||..+..+++++.++.+++.+|+.||++
T Consensus 166 ~~~~~~~~~~~A~~lG~AlQltNilRDv~eD~~~gR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~ 245 (343)
T 3vj8_A 166 EDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPD 245 (343)
T ss_dssp SCHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhHHHHhCCCeeCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 11111234689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcccc-CchHHHHHHHHHHHHHHHHHHCCCCCCCCCccCCHHHHHHHHHHH
Q 044623 415 AENGVTELSEA-SRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIA 470 (486)
Q Consensus 415 A~~~l~~Lp~~-sr~pv~a~~~ly~~iL~~Ie~~~ydvf~~Rv~vsk~~Kl~ll~~a 470 (486)
|..++..||++ .+.++.++..++..+|++|++ ++++|++++++++++++|+++++
T Consensus 246 a~~~~~~L~~~~~~~~~~ip~~lA~~tL~~i~~-~~~v~~~rvkisr~~~~~l~~ra 301 (343)
T 3vj8_A 246 VITYLSRLRNQSVFNFCAIPQVMAIATLAACYN-NQQVFKGAVKIRKGQAVTLMMDA 301 (343)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTT-CGGGGTSCCCCCHHHHHHHHHHC
T ss_pred HHHHHHhCCccchhhHHHHHHHHHHHHHHHHHh-CCccccCCCcccHHHHHHHHHHh
Confidence 99999999987 344778889999999999986 58999999999999999999876
No 4
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=96.01 E-value=0.2 Score=50.76 Aligned_cols=139 Identities=12% Similarity=0.093 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhhccCCC--CCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhH-
Q 044623 287 PFRDMIEGMRMDLRKSR--YKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDV- 362 (486)
Q Consensus 287 ~l~~mIegm~~DL~~~~--~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv- 362 (486)
.+.+|+.|...|+.... -.|++++..-+++-.|.+..+.+.+... ...+....+...+.+.++|.|+|+.+=+-|+
T Consensus 141 ~~~~~~~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~ 220 (334)
T 3rmg_A 141 LGQKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 35689999999987642 3688998888888777777666654321 1112222345678899999999999988886
Q ss_pred ---------HHHHHcCCCCCCHHhHHhcCCCh--hhh---h-ccCCCH-H---HHH------HHHHHHHHHHHHHHHHHH
Q 044623 363 ---------GEDAQRGRVYLPQDELAQAGLSD--DDI---F-AGEVTN-K---WRN------FMKNQIKRARMFFDMAEN 417 (486)
Q Consensus 363 ---------~EDl~rGRiYLP~d~L~k~Gvs~--edL---~-~g~~~~-~---~r~------li~~la~rAr~~l~~A~~ 417 (486)
+.|++.|.+-||.=..-+..-.. +.| + .+..++ . +++ .+...-..|+.+.++|..
T Consensus 221 ~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~ 300 (334)
T 3rmg_A 221 DSKKIGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFD 300 (334)
T ss_dssp CC------CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcCCCchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 48999999999976533332111 111 1 122222 1 222 233445667888899999
Q ss_pred hhhhcccc
Q 044623 418 GVTELSEA 425 (486)
Q Consensus 418 ~l~~Lp~~ 425 (486)
.+..+|+.
T Consensus 301 ~L~~lp~~ 308 (334)
T 3rmg_A 301 LLAALPDS 308 (334)
T ss_dssp HHTTSCCC
T ss_pred HHHhCCCc
Confidence 99888853
No 5
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=95.90 E-value=0.09 Score=53.78 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhhccCC--CCCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhH-
Q 044623 287 PFRDMIEGMRMDLRKS--RYKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDV- 362 (486)
Q Consensus 287 ~l~~mIegm~~DL~~~--~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv- 362 (486)
.+.+|+.|...|+... .-.|++++..-+++-.|.+..+.+.+... ...+....+.......++|.|+|+.+=+-|+
T Consensus 151 ~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 151 ASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678999999998543 24689999887777777777666654321 1112222345678899999999999888876
Q ss_pred ----------HHHHHcCCCCCCHHhHHhcCCCh--hhh---hcc---------CCCHHH---HHH------HHHHHHHHH
Q 044623 363 ----------GEDAQRGRVYLPQDELAQAGLSD--DDI---FAG---------EVTNKW---RNF------MKNQIKRAR 409 (486)
Q Consensus 363 ----------~EDl~rGRiYLP~d~L~k~Gvs~--edL---~~g---------~~~~~~---r~l------i~~la~rAr 409 (486)
+.|++.|.+-||.=..-+.+ ++ +.| +.. ...+.+ ..+ +..-...|+
T Consensus 231 gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~ 309 (352)
T 3nf2_A 231 GDPDATGKQTWSDLRQRKKSLPVVAALAAG-GAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEAR 309 (352)
T ss_dssp CCHHHHSSCTTHHHHTTCCCHHHHHHHHHC-SHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CChhhhCCCcCcccccCCccHHHHHHHHhC-ChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHH
Confidence 57999999999976544432 22 122 211 111222 222 244455688
Q ss_pred HHHHHHHHhhhhcccc
Q 044623 410 MFFDMAENGVTELSEA 425 (486)
Q Consensus 410 ~~l~~A~~~l~~Lp~~ 425 (486)
.+.++|...+..+|+.
T Consensus 310 ~~~~~A~~~L~~lp~~ 325 (352)
T 3nf2_A 310 RQHTIAIEALDAVDMP 325 (352)
T ss_dssp HHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 8999999999888863
No 6
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=95.51 E-value=0.99 Score=46.10 Aligned_cols=193 Identities=15% Similarity=0.061 Sum_probs=114.1
Q ss_pred CHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcHHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHhCC--CChHHH-
Q 044623 217 TSERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGR-----PFDMLDAALSDTVTKFP--VDIQPF- 288 (486)
Q Consensus 217 P~e~R~ai~ALYAF~R~lDdIvDd~~~~~i~~~~L~~Wrd~Le~~f~G~-----p~~pv~~aL~~~v~~~~--Lp~~~l- 288 (486)
+.++...+.-+..|.-.+||+-|+...+ .....++.+.+.+..++.|. +.+|+..+|.++..+.. .++...
T Consensus 102 s~erL~l~a~~~~w~f~~DD~~D~~~~g-~~~~~~~~~~~~l~~~l~~~~~~p~~~~p~~~al~dl~~~~~~~~~~~~~~ 180 (382)
T 3kb9_A 102 PDEVLQAIADYSAWFFVWDDRHDRDIVH-GRAGAWRRLRGLLHTALDSPGDHLHHEDTLVAGFADSVRRLYAFLPATWNA 180 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHSCGGGTTCSSHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccccc-cCHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHccCCHHHHH
Confidence 4455556777788888999999863211 12334555566666666652 23688899988877643 344433
Q ss_pred ------HHHHHHHHhhc---cCCCCCCHHHHHHHHHhhhhHHHHHHHh--hhCCCCC-CccchhhHHHHHHHHHHHHHHH
Q 044623 289 ------RDMIEGMRMDL---RKSRYKNFDELYLYCYYVAGTVGLMSVP--VMGIAPD-SQATTESVYNAALALGIANQLT 356 (486)
Q Consensus 289 ------~~mIegm~~DL---~~~~~~T~~DL~~Yc~~VAGtVG~Lll~--ilg~~~~-~~a~~e~~~~~A~~LG~ALQLT 356 (486)
.++++++...+ ....++|++|+..+-..+.|.--.+.+- .+|..-. .....+.........+...-++
T Consensus 181 r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~p~~~~l~~~~~~i~rL~ 260 (382)
T 3kb9_A 181 RFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPAYRRAALLSQEFAAWY 260 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhChHHHHHHHHHHHHHHHH
Confidence 44555554433 2245789999999988888764433322 2343211 0001122334556677777778
Q ss_pred HHHHhHHHHHHcCCC-CCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044623 357 NILRDVGEDAQRGRV-YLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGV 419 (486)
Q Consensus 357 NILRDv~EDl~rGRi-YLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l 419 (486)
|=|-.......+|-+ =+-.=+|.++|++.++ ..+.+..+++.+.+.+.++...+
T Consensus 261 NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~ee---------A~~~v~~~i~~~~k~~~~~~~~L 315 (382)
T 3kb9_A 261 NDLCSLPKEIAGDEVHNLGISLITHHSLTLEE---------AIGEVRRRVEECITEFLAVERDA 315 (382)
T ss_dssp HHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHcCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777777777764 2223356778888654 44555666666666665555443
No 7
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=95.27 E-value=0.49 Score=47.18 Aligned_cols=136 Identities=12% Similarity=0.129 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhhccC---CCCCCHHHHHHHHHhhhhHHHHHHHhhhCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhH-
Q 044623 287 PFRDMIEGMRMDLRK---SRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDV- 362 (486)
Q Consensus 287 ~l~~mIegm~~DL~~---~~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv- 362 (486)
.+.+|+.|...|+.. ....|++++..-+++=.|....+.+.+...-.+.. +...+...++|.|+|+.+=+-|+
T Consensus 119 ~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~---~~l~~~g~~lG~aFQi~DD~ld~~ 195 (301)
T 2q80_A 119 QLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYK---EDLKPLLNTLGLFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC---SCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCCh---HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 356889999999853 22468999988888877777766666543221111 13567899999999999888776
Q ss_pred ----------HHHHHcCCCCCCHHhHHhcCCChhhh---h-ccCCCHHHHH----HH------HHHHHHHHHHHHHHHHh
Q 044623 363 ----------GEDAQRGRVYLPQDELAQAGLSDDDI---F-AGEVTNKWRN----FM------KNQIKRARMFFDMAENG 418 (486)
Q Consensus 363 ----------~EDl~rGRiYLP~d~L~k~Gvs~edL---~-~g~~~~~~r~----li------~~la~rAr~~l~~A~~~ 418 (486)
+.|++.|.+-||.=..-+..-....+ . .+..++.... ++ ...-..++.+.++|...
T Consensus 196 ~~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~ 275 (301)
T 2q80_A 196 SKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQ 275 (301)
T ss_dssp CC------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhCCCccchhhcCCcHHHHHHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 47899999999986544432111112 2 2222233222 22 23345578888888888
Q ss_pred hhhcccc
Q 044623 419 VTELSEA 425 (486)
Q Consensus 419 l~~Lp~~ 425 (486)
+..+|..
T Consensus 276 L~~l~~~ 282 (301)
T 2q80_A 276 IDARGGN 282 (301)
T ss_dssp HHHTTCC
T ss_pred HHcCCCC
Confidence 8877753
No 8
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=95.21 E-value=0.84 Score=46.13 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=86.6
Q ss_pred HHHHHHHHHhhccCC--CCCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhH--
Q 044623 288 FRDMIEGMRMDLRKS--RYKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDV-- 362 (486)
Q Consensus 288 l~~mIegm~~DL~~~--~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv-- 362 (486)
..+|+.|...|+... .--|++++..-+++-.|.+..+.+.+... ...+....+...+...++|.|+|+.+=+-|+
T Consensus 146 ~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~ 225 (342)
T 1wy0_A 146 SNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIA 225 (342)
T ss_dssp HHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 578999999998643 23488998888888888777776654321 1111122345668899999999999888876
Q ss_pred ---------HHHHHcCCCCCCHHhHHhcCCChhh---h---hccCC-------------CHH---HHHHH------HHHH
Q 044623 363 ---------GEDAQRGRVYLPQDELAQAGLSDDD---I---FAGEV-------------TNK---WRNFM------KNQI 405 (486)
Q Consensus 363 ---------~EDl~rGRiYLP~d~L~k~Gvs~ed---L---~~g~~-------------~~~---~r~li------~~la 405 (486)
+.|++.|.+-||.=..-+.. ++++ | +.... .+. +++++ ...-
T Consensus 226 d~~~~GK~~g~Dl~egK~Tlp~i~al~~~-~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~ 304 (342)
T 1wy0_A 226 DEKKLGKPVGSDIRKGKKTLIVAHFFENA-DEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAA 304 (342)
T ss_dssp CHHHHTSCSCHHHHHTCCCHHHHHHHHHC-CHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHH
T ss_pred ChhhhCCCchhHHhCCCCcHHHHHHHHhC-CHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHH
Confidence 37889999999986543332 2211 1 11111 112 22222 2334
Q ss_pred HHHHHHHHHHHHhhhhccc
Q 044623 406 KRARMFFDMAENGVTELSE 424 (486)
Q Consensus 406 ~rAr~~l~~A~~~l~~Lp~ 424 (486)
..++.+.++|...+..+|+
T Consensus 305 ~~~~~~~~~A~~~L~~l~~ 323 (342)
T 1wy0_A 305 EIAKDMIKKANEALRILPK 323 (342)
T ss_dssp HHHHHHHHHHHTTGGGSCC
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 5678888888888888874
No 9
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=95.08 E-value=0.11 Score=52.33 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=76.2
Q ss_pred HHHHHHHhhccCC-CCCCHHHHHHHHHhhhhHHHHHHHhhhCCC-C-CCccchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 044623 290 DMIEGMRMDLRKS-RYKNFDELYLYCYYVAGTVGLMSVPVMGIA-P-DSQATTESVYNAALALGIANQLTNILRDVGEDA 366 (486)
Q Consensus 290 ~mIegm~~DL~~~-~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~-~-~~~a~~e~~~~~A~~LG~ALQLTNILRDv~EDl 366 (486)
.|+.|...|+... ...|++++..-.++-.|.+..+.+.+-.+- . .+....+...+.+.++|.|+|+.+=+-|+--|-
T Consensus 152 ~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 231 (317)
T 4f62_A 152 GMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDT 231 (317)
T ss_dssp THHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred hHHHhHHHHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 5889999998654 336888888777777777766666543221 1 122223456788999999999998888873331
Q ss_pred HcCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 044623 367 QRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEA 425 (486)
Q Consensus 367 ~rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp~~ 425 (486)
. .+.|- .-+|+..|+.+=-+.-.+..--..|+.+.++|...+..+|..
T Consensus 232 ~---------~~GK~--~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~ 279 (317)
T 4f62_A 232 E---------TLGKT--QFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGDK 279 (317)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred H---------hhCCC--cchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 1 11110 113444555544343456666778899999999999988863
No 10
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=94.97 E-value=0.27 Score=49.70 Aligned_cols=126 Identities=16% Similarity=0.147 Sum_probs=77.3
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHhhhhHHHHHHHhhhCCC-C-CCccchhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 044623 289 RDMIEGMRMDLRKS-RYKNFDELYLYCYYVAGTVGLMSVPVMGIA-P-DSQATTESVYNAALALGIANQLTNILRDVGED 365 (486)
Q Consensus 289 ~~mIegm~~DL~~~-~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~-~-~~~a~~e~~~~~A~~LG~ALQLTNILRDv~ED 365 (486)
..|+.|...|+... .-.|.+++..-.++-.|.+..+.+.+..+- . .+....+...+.+.++|.|+|+.+=+-|+--|
T Consensus 158 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d 237 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESD 237 (324)
T ss_dssp TTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 46889999998654 246889988888788887777766654322 1 12222334668899999999999877776322
Q ss_pred HHcCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 044623 366 AQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEA 425 (486)
Q Consensus 366 l~rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp~~ 425 (486)
- +.+.|- .-+|+..|+.+=-+.-.+..--..|+.+.++|...+..+|..
T Consensus 238 ~---------~~~GK~--~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~ 286 (324)
T 3ts7_A 238 T---------QTLGKT--RGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGPE 286 (324)
T ss_dssp --------------------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCGG
T ss_pred H---------HHhCCC--ccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 1 111110 012344444443333345556678899999999999999874
No 11
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=94.85 E-value=0.13 Score=52.22 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhccCC-----CCCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 044623 287 PFRDMIEGMRMDLRKS-----RYKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILR 360 (486)
Q Consensus 287 ~l~~mIegm~~DL~~~-----~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILR 360 (486)
.+.+|+.|...|+... ...|++++..-+++=.|.+..+.+.+... ...+. ..+...+...++|.|+|+.+=+-
T Consensus 139 ~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~l 217 (340)
T 2e8v_A 139 ELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYL 217 (340)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999998532 24689999888888777777666654322 11111 12345678999999999998888
Q ss_pred hH-----------HHHHHcCCCCCCHHh
Q 044623 361 DV-----------GEDAQRGRVYLPQDE 377 (486)
Q Consensus 361 Dv-----------~EDl~rGRiYLP~d~ 377 (486)
|+ +.|++.|.+-+|.=.
T Consensus 218 d~~~~~~~~GK~~g~Dl~egK~Tlp~i~ 245 (340)
T 2e8v_A 218 NLKDFQMSSEKGFAEDITEGKLSFPIVH 245 (340)
T ss_dssp HHHC-----CCCTTHHHHTTCCCHHHHH
T ss_pred hccCChhhhCCCchhhHhcCCchHHHHH
Confidence 87 378889999998754
No 12
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=94.83 E-value=0.18 Score=51.70 Aligned_cols=137 Identities=15% Similarity=0.215 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhccCC------------C--CCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHH
Q 044623 288 FRDMIEGMRMDLRKS------------R--YKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIA 352 (486)
Q Consensus 288 l~~mIegm~~DL~~~------------~--~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~A 352 (486)
+.+|+.|...|+... . -.|++++..-+++-.|.+..+.+.+... ...+....+...+.+.++|.|
T Consensus 141 ~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 220 (358)
T 4dhd_A 141 IKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVA 220 (358)
T ss_dssp HHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 467999999998654 2 4588998887777777777666654322 111112233466889999999
Q ss_pred HHHHHHHHhH-----------HHHHHcCCC-CCCHHhHHhcCCChh---hh---h-ccCCC-HHH---HHHH------HH
Q 044623 353 NQLTNILRDV-----------GEDAQRGRV-YLPQDELAQAGLSDD---DI---F-AGEVT-NKW---RNFM------KN 403 (486)
Q Consensus 353 LQLTNILRDv-----------~EDl~rGRi-YLP~d~L~k~Gvs~e---dL---~-~g~~~-~~~---r~li------~~ 403 (486)
+|+.+=+-|+ +.|++.|.+ -+|.=..-+.. +++ .| + .+..+ +.+ ++++ ..
T Consensus 221 FQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~-~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~ 299 (358)
T 4dhd_A 221 FQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHL-GEGERRRLLEILAREVVEEADVREAVALLDSVGAREE 299 (358)
T ss_dssp HHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHHS-CHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHhC-ChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHH
Confidence 9999877776 579999999 88876543332 221 11 1 12212 222 2222 23
Q ss_pred HHHHHHHHHHHHHHhhhhcccc
Q 044623 404 QIKRARMFFDMAENGVTELSEA 425 (486)
Q Consensus 404 la~rAr~~l~~A~~~l~~Lp~~ 425 (486)
.-..|+.+.++|...+..+|+.
T Consensus 300 a~~~a~~~~~~A~~~L~~lp~~ 321 (358)
T 4dhd_A 300 ALRLAARYREEAERHLAKIPNN 321 (358)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCCC
Confidence 4567889999999999988853
No 13
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=94.81 E-value=0.2 Score=50.49 Aligned_cols=125 Identities=13% Similarity=0.112 Sum_probs=75.4
Q ss_pred HHHHHHHHhhccCCC--CCCHHHHHHHHHhhhhHHHHHHHhhhCCC-C--CCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 044623 289 RDMIEGMRMDLRKSR--YKNFDELYLYCYYVAGTVGLMSVPVMGIA-P--DSQATTESVYNAALALGIANQLTNILRDVG 363 (486)
Q Consensus 289 ~~mIegm~~DL~~~~--~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~-~--~~~a~~e~~~~~A~~LG~ALQLTNILRDv~ 363 (486)
..|+.|...|+.... -.|++++..-..+-.|.+..+.+.+ .+- . .+....+...+.+.++|.|+|+.+=+-|+-
T Consensus 158 ~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~ 236 (313)
T 3lom_A 158 SGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLY 236 (313)
T ss_dssp TTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 468899999987642 5688998887777777776666665 332 1 122223456788999999999998777763
Q ss_pred HHHHcCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 044623 364 EDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEA 425 (486)
Q Consensus 364 EDl~rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp~~ 425 (486)
-|- +.+.|- .-+|+..|+.+=-+.-.+..--..|+.+.++|...+..+|..
T Consensus 237 gd~---------~~~GK~--~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 287 (313)
T 3lom_A 237 APT---------QILGKG--RSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGSK 287 (313)
T ss_dssp CC--------------------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGGG
T ss_pred CCH---------HhhCCC--CcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 221 011110 012333444333222234555677888999999999888874
No 14
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=94.78 E-value=0.22 Score=49.82 Aligned_cols=126 Identities=17% Similarity=0.167 Sum_probs=77.3
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHhhhhHHHHHHHhhhCCCCC--CccchhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 044623 289 RDMIEGMRMDLRKS-RYKNFDELYLYCYYVAGTVGLMSVPVMGIAPD--SQATTESVYNAALALGIANQLTNILRDVGED 365 (486)
Q Consensus 289 ~~mIegm~~DL~~~-~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~~~--~~a~~e~~~~~A~~LG~ALQLTNILRDv~ED 365 (486)
..|+.|...|+... ...|.+++..-+.+-.|.+..+.+.+...-.+ +....+...+.+.++|.|+|+.+=+-|+-.|
T Consensus 158 ~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~ 237 (302)
T 3p8r_A 158 QGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISD 237 (302)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 36888999998764 34688888877777777776666654322111 1112345678999999999998877776332
Q ss_pred HHcCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 044623 366 AQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEA 425 (486)
Q Consensus 366 l~rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp~~ 425 (486)
- +.+.|- .-+|+..|+.+=-+.-.+..--..|+.+.++|...+..+|..
T Consensus 238 ~---------~~~GK~--~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 286 (302)
T 3p8r_A 238 T---------ETLGKP--QGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYN 286 (302)
T ss_dssp --------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred H---------HHhCCC--cchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 1 111110 123455555554444456666788999999999999999864
No 15
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=94.55 E-value=0.24 Score=50.83 Aligned_cols=138 Identities=14% Similarity=0.209 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhhccCC-CCCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhH--
Q 044623 287 PFRDMIEGMRMDLRKS-RYKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDV-- 362 (486)
Q Consensus 287 ~l~~mIegm~~DL~~~-~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv-- 362 (486)
.+.+|+.|...|+... ...|++++..-+++-.|.+..+.+.+... ...+....+...+.+.++|.|+|+.+=+-|+
T Consensus 168 ~~~~~~~GQ~ldl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~ 247 (360)
T 3lmd_A 168 TFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFS 247 (360)
T ss_dssp HHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3568999999998653 22677888777777777777666554322 1112222344668899999999999888777
Q ss_pred ---------HHHHHcCCCCCCHHhHHhcCCChh--h---hhccC-CCH-HHH---HH------HHHHHHHHHHHHHHHHH
Q 044623 363 ---------GEDAQRGRVYLPQDELAQAGLSDD--D---IFAGE-VTN-KWR---NF------MKNQIKRARMFFDMAEN 417 (486)
Q Consensus 363 ---------~EDl~rGRiYLP~d~L~k~Gvs~e--d---L~~g~-~~~-~~r---~l------i~~la~rAr~~l~~A~~ 417 (486)
+.|++.|.+-||.=..-+.. +++ . ++.+. .++ .+. .+ +..--..++.+.++|..
T Consensus 248 d~~~~GK~~g~Dl~egK~Tlp~l~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~ 326 (360)
T 3lmd_A 248 ETHESGKTPGTDLREGVFTLPVLYALRED-TPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANA 326 (360)
T ss_dssp --------CCHHHHHTCCCHHHHHHHHCC-SHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhCCCchhHHhcCCchHHHHHHHHcC-CchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999987654442 221 1 22221 222 222 22 34445668889999999
Q ss_pred hhhhcccc
Q 044623 418 GVTELSEA 425 (486)
Q Consensus 418 ~l~~Lp~~ 425 (486)
.+..+|..
T Consensus 327 ~L~~lp~~ 334 (360)
T 3lmd_A 327 ELDRLPDS 334 (360)
T ss_dssp HHTTSCCS
T ss_pred HHHhCCCc
Confidence 99988864
No 16
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=94.45 E-value=1.7 Score=44.83 Aligned_cols=134 Identities=12% Similarity=0.102 Sum_probs=83.4
Q ss_pred HHHHHHHHhhccCC--CCCCHHHHHHHHHhhhhHH-HHHHHhh---hCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhH
Q 044623 289 RDMIEGMRMDLRKS--RYKNFDELYLYCYYVAGTV-GLMSVPV---MGIAPDSQATTESVYNAALALGIANQLTNILRDV 362 (486)
Q Consensus 289 ~~mIegm~~DL~~~--~~~T~~DL~~Yc~~VAGtV-G~Lll~i---lg~~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv 362 (486)
.+|+.|...|+... .-.|++++..-+.+=.|.. ..+.+.+ ++-.+ ....+.......++|+|+|+.+=+-|+
T Consensus 185 ~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~--~~~~~~l~~~G~~lG~AFQI~DDiLd~ 262 (380)
T 3lk5_A 185 TEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGS--PQLIDALLHYGHDIGIAFQLRDDLLGV 262 (380)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788888888542 3458888887766666665 3433332 32221 222345678899999999999888886
Q ss_pred -----------HHHHHcCCCCCCHHhHHhcCC--Ch---h---hhhccCCC-H---HHHHHH------HHHHHHHHHHHH
Q 044623 363 -----------GEDAQRGRVYLPQDELAQAGL--SD---D---DIFAGEVT-N---KWRNFM------KNQIKRARMFFD 413 (486)
Q Consensus 363 -----------~EDl~rGRiYLP~d~L~k~Gv--s~---e---dL~~g~~~-~---~~r~li------~~la~rAr~~l~ 413 (486)
+.|++.|.+-+|.=..-+..- ++ + +++....+ + .+++++ ......++.+.+
T Consensus 263 ~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~ 342 (380)
T 3lk5_A 263 FGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQLTE 342 (380)
T ss_dssp HSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 579999999998754332210 11 1 12222222 2 223322 344566888999
Q ss_pred HHHHhhhhccc
Q 044623 414 MAENGVTELSE 424 (486)
Q Consensus 414 ~A~~~l~~Lp~ 424 (486)
+|...+..+|.
T Consensus 343 ~A~~~L~~lp~ 353 (380)
T 3lk5_A 343 SGLAHLDDVDI 353 (380)
T ss_dssp HHHHHGGGSCC
T ss_pred HHHHHHHhCCC
Confidence 99999998884
No 17
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=94.39 E-value=0.46 Score=48.10 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhhccCC--CCCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhH-
Q 044623 287 PFRDMIEGMRMDLRKS--RYKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDV- 362 (486)
Q Consensus 287 ~l~~mIegm~~DL~~~--~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv- 362 (486)
.+.+|+.|...|+... .-.|++++..-+++-.|.+..+.+.+... ...+....+.+.+.+.++|.|+|+.+=+-|+
T Consensus 151 ~~~~~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~ 230 (334)
T 3pko_A 151 AMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYA 230 (334)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567899988887653 34688888777777777776666554321 1112222344667899999999999877775
Q ss_pred ----------HHHHHcCCCCCCHHhHHhcCCCh--hhhhc--cCCCH-H---HHHHH------HHHHHHHHHHHHHHHHh
Q 044623 363 ----------GEDAQRGRVYLPQDELAQAGLSD--DDIFA--GEVTN-K---WRNFM------KNQIKRARMFFDMAENG 418 (486)
Q Consensus 363 ----------~EDl~rGRiYLP~d~L~k~Gvs~--edL~~--g~~~~-~---~r~li------~~la~rAr~~l~~A~~~ 418 (486)
+.|++.|.+-||.=..-+.. ++ .+++. +..++ . ++.++ ..-...++.+.++|...
T Consensus 231 ~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~-~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~ 309 (334)
T 3pko_A 231 GDPKRTQKPVLEDLRSGVYSLPLLLSLSHA-PRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTL 309 (334)
T ss_dssp SCTTSCCHHHHHHHHTTCCCHHHHHHGGGS-HHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhcCCCCCCccccCchhHHHHHHHHhC-cHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 68999999999976543322 11 11221 11122 1 22222 23445678888888888
Q ss_pred hhhcccc
Q 044623 419 VTELSEA 425 (486)
Q Consensus 419 l~~Lp~~ 425 (486)
+..+|..
T Consensus 310 L~~lp~~ 316 (334)
T 3pko_A 310 IQQLPVG 316 (334)
T ss_dssp HTTSCSS
T ss_pred HHhCCCc
Confidence 8888763
No 18
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=94.39 E-value=1.5 Score=44.34 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=86.7
Q ss_pred HHHHHHHHHhhccCCC--CCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhH--
Q 044623 288 FRDMIEGMRMDLRKSR--YKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDV-- 362 (486)
Q Consensus 288 l~~mIegm~~DL~~~~--~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv-- 362 (486)
..+|+.|...|+.... -.|++++..-+++-.|.+..+.+.+... ...+....+...+...++|.|+|+.+=+-|+
T Consensus 162 ~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~g 241 (348)
T 3apz_A 162 VEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 5789999999997642 2477887776666666666665554322 1111122334567899999999999988886
Q ss_pred ---------HHHHHcCCCCCCHHhHHhcCCChhhhhccCC--CHH---HHH------HHHHHHHHHHHHHHHHHHhhhhc
Q 044623 363 ---------GEDAQRGRVYLPQDELAQAGLSDDDIFAGEV--TNK---WRN------FMKNQIKRARMFFDMAENGVTEL 422 (486)
Q Consensus 363 ---------~EDl~rGRiYLP~d~L~k~Gvs~edL~~g~~--~~~---~r~------li~~la~rAr~~l~~A~~~l~~L 422 (486)
+.|++.|.+-||.=..-+..-...+++.... .+. ++. .+...-..++.+.++|...+..+
T Consensus 242 d~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l 321 (348)
T 3apz_A 242 TSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSL 321 (348)
T ss_dssp TTTCTTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChhhcCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcC
Confidence 3689999999997653333212222222111 122 222 23344466788888898888888
Q ss_pred ccc
Q 044623 423 SEA 425 (486)
Q Consensus 423 p~~ 425 (486)
|..
T Consensus 322 ~~~ 324 (348)
T 3apz_A 322 PET 324 (348)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 19
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=94.38 E-value=0.97 Score=45.17 Aligned_cols=124 Identities=14% Similarity=0.095 Sum_probs=71.3
Q ss_pred HHHHHHHHhhccCCC-CCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 044623 289 RDMIEGMRMDLRKSR-YKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDVGEDA 366 (486)
Q Consensus 289 ~~mIegm~~DL~~~~-~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv~EDl 366 (486)
..|+.|...|+.... -.|++++..-++.-.|.+..+.+.+... ...+....+...+.+.++|.|+|+.+=+-|+--|-
T Consensus 156 ~~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~ 235 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTE 235 (302)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 368889999986542 4588888877767677776666554321 11122223456788999999999988777763221
Q ss_pred HcCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 044623 367 QRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELS 423 (486)
Q Consensus 367 ~rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp 423 (486)
. .+.|- .-+|+..|+.+=-+.-.+..--..++.+.++|...+..+|
T Consensus 236 ~---------~~GK~--~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~ 281 (302)
T 3p8l_A 236 A---------DLGKK--VGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKIK 281 (302)
T ss_dssp --------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---------HhCCC--hhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 11110 0234445555433333455555677788888888887775
No 20
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=94.24 E-value=0.26 Score=49.86 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=72.8
Q ss_pred HHHHHHHHhhccCCC--CCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhH---
Q 044623 289 RDMIEGMRMDLRKSR--YKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDV--- 362 (486)
Q Consensus 289 ~~mIegm~~DL~~~~--~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv--- 362 (486)
..|+.|...|+.... -.|.+++..-+++=.|.+..+.+.+-.+ ...+....+...+.+.++|.|+|+.+=+-|+
T Consensus 180 ~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd 259 (324)
T 3uca_A 180 DGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGN 259 (324)
T ss_dssp TTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 358899999986542 4688888777766667676666554321 1112222345678899999999999877776
Q ss_pred --------HHHHHcCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 044623 363 --------GEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEA 425 (486)
Q Consensus 363 --------~EDl~rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp~~ 425 (486)
+.|++.|.+-||.= -.+..--..|+.+.++|...+..+|..
T Consensus 260 ~~~~GK~~g~Dl~egK~T~p~l----------------------~al~~a~~~a~~~~~~A~~~L~~l~~~ 308 (324)
T 3uca_A 260 AKDLGKNVHKDQESNKNNYITI----------------------FGLEECKKKCVNITEECIEILSSIKGN 308 (324)
T ss_dssp -----------------CHHHH----------------------HCHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHhCCCcchHhhcCCccHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34444444444433 334555677888899999999888864
No 21
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=94.16 E-value=0.7 Score=47.03 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=84.1
Q ss_pred HHHHHHHHHhhccCC--CCCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhH--
Q 044623 288 FRDMIEGMRMDLRKS--RYKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDV-- 362 (486)
Q Consensus 288 l~~mIegm~~DL~~~--~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv-- 362 (486)
+.+|+.|...|+... .-.|++++..-+++-.|.+..+.+.+... ...+....+...+...++|.|+|+.+=+-|+
T Consensus 160 ~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 160 SRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 467999999998754 24688999888888888777776655321 1111222345678899999999999877775
Q ss_pred ---------HHHHHcCCCCCCHHhHHhcCCChh-h----hhc-c----CCCHHHHHHH------HHHHHHHHHHHHHHHH
Q 044623 363 ---------GEDAQRGRVYLPQDELAQAGLSDD-D----IFA-G----EVTNKWRNFM------KNQIKRARMFFDMAEN 417 (486)
Q Consensus 363 ---------~EDl~rGRiYLP~d~L~k~Gvs~e-d----L~~-g----~~~~~~r~li------~~la~rAr~~l~~A~~ 417 (486)
+.|++.|.+-+|.=..-+.+-+.+ + ++. + ..-..+..++ ..-...|+.+.++|..
T Consensus 240 d~~~~GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~ 319 (345)
T 3oyr_A 240 ATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKA 319 (345)
T ss_dssp -----------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcCCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 578889999999765444332211 1 111 1 1122333333 4455678899999999
Q ss_pred hhhhcccc
Q 044623 418 GVTELSEA 425 (486)
Q Consensus 418 ~l~~Lp~~ 425 (486)
.+..+|+.
T Consensus 320 ~L~~lp~~ 327 (345)
T 3oyr_A 320 ALAMFPAN 327 (345)
T ss_dssp TTTTSCSS
T ss_pred HHHhCCCc
Confidence 99988863
No 22
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=94.15 E-value=0.56 Score=47.62 Aligned_cols=138 Identities=17% Similarity=0.184 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhccCC--CCCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhH--
Q 044623 288 FRDMIEGMRMDLRKS--RYKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDV-- 362 (486)
Q Consensus 288 l~~mIegm~~DL~~~--~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv-- 362 (486)
..+|+.|...|+... .-.|++++..-+++-.|.+..+.+.+... ...+....+...+.+.++|.|+|+.+=+-|+
T Consensus 148 ~~~~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~ 227 (341)
T 3mzv_A 148 SAVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGG 227 (341)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 567999999998643 34688998887777777777666654322 1112222344668899999999999877776
Q ss_pred ---------HHHHHcCCCCCCHHhHHhcCCChh-----hhhc-cC-CCHHH---HHH------HHHHHHHHHHHHHHHHH
Q 044623 363 ---------GEDAQRGRVYLPQDELAQAGLSDD-----DIFA-GE-VTNKW---RNF------MKNQIKRARMFFDMAEN 417 (486)
Q Consensus 363 ---------~EDl~rGRiYLP~d~L~k~Gvs~e-----dL~~-g~-~~~~~---r~l------i~~la~rAr~~l~~A~~ 417 (486)
+.|++.|.+-||.=..-+..-..+ +++. +. ..+.+ +++ +...-..|+.+.++|..
T Consensus 228 d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~ 307 (341)
T 3mzv_A 228 KSAEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARK 307 (341)
T ss_dssp --------CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcCCCCCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 468999999999765443322111 1221 21 12222 222 34445668889999999
Q ss_pred hhhhcccc
Q 044623 418 GVTELSEA 425 (486)
Q Consensus 418 ~l~~Lp~~ 425 (486)
.+..+|+.
T Consensus 308 ~L~~lp~~ 315 (341)
T 3mzv_A 308 ALAKLPDH 315 (341)
T ss_dssp HHTTSCCC
T ss_pred HHHhCCCC
Confidence 99888864
No 23
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=94.12 E-value=0.36 Score=48.20 Aligned_cols=124 Identities=18% Similarity=0.151 Sum_probs=78.3
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 044623 289 RDMIEGMRMDLRKS-RYKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDVGEDA 366 (486)
Q Consensus 289 ~~mIegm~~DL~~~-~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv~EDl 366 (486)
..|+.|...|+... .-.|++++..-+++-.|.+..+.+.+-.+ ...+....+...+.+.++|.|+|+.+=+-|+--|-
T Consensus 148 ~~~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~ 227 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDE 227 (301)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 56889999998643 25688999888888888777666654321 11112223456788999999999998888885553
Q ss_pred H-cCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 044623 367 Q-RGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSE 424 (486)
Q Consensus 367 ~-rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp~ 424 (486)
. .|+- .-+|+..|+.+=-+.-.+..--..|+.+.++|...+..+|+
T Consensus 228 ~~~GK~------------~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~ 274 (301)
T 1rtr_A 228 AKLGKK------------VGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDE 274 (301)
T ss_dssp CC-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHhCCC------------cchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2 1210 01455555555444444566677889999999999988874
No 24
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=94.06 E-value=5 Score=39.50 Aligned_cols=191 Identities=12% Similarity=0.094 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCcHHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhC--CCChHH-----
Q 044623 218 SERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGRPF---DMLDAALSDTVTKF--PVDIQP----- 287 (486)
Q Consensus 218 ~e~R~ai~ALYAF~R~lDdIvDd~~~~~i~~~~L~~Wrd~Le~~f~G~p~---~pv~~aL~~~v~~~--~Lp~~~----- 287 (486)
.++...+.-+.+|.-.+||+-|.... .....++.+.+.+..+..|..+ +|+..+|.++..+. ......
T Consensus 63 ~~rl~~~ak~~~~~~~~DD~~D~~~~--~~~ee~~~~~~~l~~~~~~~~p~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~ 140 (337)
T 1ps1_A 63 GADLDLGVDLMSWFFLFDDLFDGPRG--ENPEDTKQLTDQVAAALDGPLPDTAPPIAHGFADIWRRTCEGMTPAWCARSA 140 (337)
T ss_dssp THHHHHHHHHHHHHHHHHHTTSSGGG--GCHHHHHHHHHHHHGGGTSCCCTTSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcCC--CCHHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 34444666777888899999987521 1234466677778777766533 57777887776542 223333
Q ss_pred --HHHHHHHHHhhccC---CCCC-CHHHHHHHHHhhhhHHHHHHHhhh--CCCCC-CccchhhHHHHHHHHHHHHHHHHH
Q 044623 288 --FRDMIEGMRMDLRK---SRYK-NFDELYLYCYYVAGTVGLMSVPVM--GIAPD-SQATTESVYNAALALGIANQLTNI 358 (486)
Q Consensus 288 --l~~mIegm~~DL~~---~~~~-T~~DL~~Yc~~VAGtVG~Lll~il--g~~~~-~~a~~e~~~~~A~~LG~ALQLTNI 358 (486)
+.+++++....+.. ..++ |++|+..+-..+.|.--.+.+-.+ |..-. .....+.........+...-++|=
T Consensus 141 ~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~~~l~~~~~~i~rL~ND 220 (337)
T 1ps1_A 141 RHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQIAVDVNLLLND 220 (337)
T ss_dssp HHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 34555555543322 3567 999998888877776554443333 43211 000112233466677778888888
Q ss_pred HHhHHHHHHcCCC-CCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044623 359 LRDVGEDAQRGRV-YLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGV 419 (486)
Q Consensus 359 LRDv~EDl~rGRi-YLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l 419 (486)
|-.......+|-+ =.-.=++.++|++.++ ..+.+..+++.+.+.+.+....+
T Consensus 221 l~S~~kE~~~G~~~n~V~~~m~~~g~s~ee---------A~~~v~~~i~~~~~~~~~~~~~l 273 (337)
T 1ps1_A 221 IASLEKEEARGEQNNMVMILRREHGWSKSR---------SVSHMQNEVRARLEQYLLLESCL 273 (337)
T ss_dssp HHTHHHHHHTTCCCSHHHHHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHhcCCcchHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888863 2233467888888654 44556666666666666655433
No 25
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=93.94 E-value=0.74 Score=46.23 Aligned_cols=138 Identities=13% Similarity=0.101 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhccCC--CCCCHHHHHHHHHhhhhHHHHHHHhhhCCC-CCCccchhhHHHHHHHHHHHHHHHHHHHhH--
Q 044623 288 FRDMIEGMRMDLRKS--RYKNFDELYLYCYYVAGTVGLMSVPVMGIA-PDSQATTESVYNAALALGIANQLTNILRDV-- 362 (486)
Q Consensus 288 l~~mIegm~~DL~~~--~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~-~~~~a~~e~~~~~A~~LG~ALQLTNILRDv-- 362 (486)
..+|+.|...|+... .-.|++++..-+++-.|....+.+.+...- ..+....+...+...++|.|+|+.+=+-|+
T Consensus 139 ~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~ 218 (325)
T 3aqb_B 139 ILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 468999999998653 246889988888887888777766654321 112222344668899999999999888776
Q ss_pred ---------HHHHHcCCCCCCHHhHHh-cCCCh-h------hhhc-cCCCHH---HHHHHH-----HHHHHHHHHHHHHH
Q 044623 363 ---------GEDAQRGRVYLPQDELAQ-AGLSD-D------DIFA-GEVTNK---WRNFMK-----NQIKRARMFFDMAE 416 (486)
Q Consensus 363 ---------~EDl~rGRiYLP~d~L~k-~Gvs~-e------dL~~-g~~~~~---~r~li~-----~la~rAr~~l~~A~ 416 (486)
+.|+..|.+-||.=..-+ ..-.. + +++. +...+. +.+++. ..-..++.+.++|.
T Consensus 219 ~~~~~GK~~g~Dl~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~ 298 (325)
T 3aqb_B 219 DEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKAK 298 (325)
T ss_dssp CHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred ChhhcCCccchHhhCCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999754322 11000 0 2221 111122 222222 22455777888888
Q ss_pred Hhhhhcccc
Q 044623 417 NGVTELSEA 425 (486)
Q Consensus 417 ~~l~~Lp~~ 425 (486)
..+..+|..
T Consensus 299 ~~L~~lp~~ 307 (325)
T 3aqb_B 299 YHLSQLQDS 307 (325)
T ss_dssp HHHHTSCCC
T ss_pred HHHHhCCCc
Confidence 888887754
No 26
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=93.72 E-value=0.3 Score=48.88 Aligned_cols=124 Identities=19% Similarity=0.140 Sum_probs=77.6
Q ss_pred HHHHHHHhhccCC-CCCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCC-CccchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 044623 290 DMIEGMRMDLRKS-RYKNFDELYLYCYYVAGTVGLMSVPVMGI-APD-SQATTESVYNAALALGIANQLTNILRDVGEDA 366 (486)
Q Consensus 290 ~mIegm~~DL~~~-~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~-~~a~~e~~~~~A~~LG~ALQLTNILRDv~EDl 366 (486)
.|+.|...|+... ...|++++..-+++-.|.+..+.+.+... ... +....+...+.+.++|.|+|+.+=+-|+--|-
T Consensus 153 ~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~ 232 (304)
T 3lsn_A 153 GMVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDT 232 (304)
T ss_dssp THHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHhHHHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 4889999998654 24688888887777777777666554321 111 12223456788999999999999888875543
Q ss_pred -HcCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 044623 367 -QRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEA 425 (486)
Q Consensus 367 -~rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp~~ 425 (486)
..|.- .-+|+..|+.+=-+.-.+..--..|+.+.++|...+..+|..
T Consensus 233 ~~~GK~------------~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 280 (304)
T 3lsn_A 233 ATLGKR------------QGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAA 280 (304)
T ss_dssp HHC------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHhCCC------------cccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 22221 123455555554444455666778899999999999989863
No 27
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=93.44 E-value=0.91 Score=46.26 Aligned_cols=135 Identities=10% Similarity=0.006 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhccCC--------------C----CCCHHHHHHHHHhhhhHH-HHHHHhh---hCC-CCCCccchhhHHH
Q 044623 288 FRDMIEGMRMDLRKS--------------R----YKNFDELYLYCYYVAGTV-GLMSVPV---MGI-APDSQATTESVYN 344 (486)
Q Consensus 288 l~~mIegm~~DL~~~--------------~----~~T~~DL~~Yc~~VAGtV-G~Lll~i---lg~-~~~~~a~~e~~~~ 344 (486)
..+|+.|...|+... . -.|++++..-+++=.|.. ..+.+.+ ++- .+ ....+...+
T Consensus 160 ~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~--~~~~~~l~~ 237 (362)
T 1yhl_A 160 DYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAA--SVEMNLVER 237 (362)
T ss_dssp HHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGG--GSCHHHHHH
T ss_pred HHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCC--HHHHHHHHH
Confidence 478999999998765 2 258888888887777776 5554443 322 21 122345678
Q ss_pred HHHHHHHHHHHHHHHHhHH----------HHHHcCCCCCCHHhHHhcCCChhh---h---hccCCCHH---HHHHHH---
Q 044623 345 AALALGIANQLTNILRDVG----------EDAQRGRVYLPQDELAQAGLSDDD---I---FAGEVTNK---WRNFMK--- 402 (486)
Q Consensus 345 ~A~~LG~ALQLTNILRDv~----------EDl~rGRiYLP~d~L~k~Gvs~ed---L---~~g~~~~~---~r~li~--- 402 (486)
...++|.|+|+.+=+-|+- .|++.|.+-||.=..-+.. ++++ | +.....+. +++++.
T Consensus 238 ~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~T~p~l~al~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g 316 (362)
T 1yhl_A 238 VAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKA-NAAQVAEFKANYGDKDPAKVAVVKRLYSEAN 316 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHTTC-CHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCchHHHHHHHHhC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Confidence 9999999999999888874 5778899988875433322 2221 2 22221122 222222
Q ss_pred ---HHHHHHHHHHHHHHHhhhhcccc
Q 044623 403 ---NQIKRARMFFDMAENGVTELSEA 425 (486)
Q Consensus 403 ---~la~rAr~~l~~A~~~l~~Lp~~ 425 (486)
.....++.++++|...+..+|..
T Consensus 317 ~~~~~~~~~~~~~~~A~~~L~~lp~~ 342 (362)
T 1yhl_A 317 LQADFAAYEAEVVREVESLIEQLKVK 342 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 22355777788888888777754
No 28
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=93.33 E-value=0.56 Score=47.15 Aligned_cols=135 Identities=15% Similarity=0.125 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhhccCC--CCCCHHHHHHHHHhhhhHHHHHHHhhhCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhH--
Q 044623 287 PFRDMIEGMRMDLRKS--RYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDV-- 362 (486)
Q Consensus 287 ~l~~mIegm~~DL~~~--~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv-- 362 (486)
.+.+|+.|...|+... .-.|++++..-+++-.|.+..+.+.+...-.+.. .+.....+.++|.|+|+.+=+-|+
T Consensus 130 ~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~~~l~~~g~~lG~aFQI~DD~ld~~~ 207 (315)
T 3tc1_A 130 AVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD--AKIYADFGLNFGMAFQIIDDLLDITQ 207 (315)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3568889999998643 3468888887777777777766665432211111 345678999999999999988887
Q ss_pred ---------HHHHHcCCCCCCHHhHHhcCCChh---hh---hccCCCHHHH---HH------HHHHHHHHHHHHHHHHHh
Q 044623 363 ---------GEDAQRGRVYLPQDELAQAGLSDD---DI---FAGEVTNKWR---NF------MKNQIKRARMFFDMAENG 418 (486)
Q Consensus 363 ---------~EDl~rGRiYLP~d~L~k~Gvs~e---dL---~~g~~~~~~r---~l------i~~la~rAr~~l~~A~~~ 418 (486)
+.|++.|.+-+|.=..-+.. +++ .| +.....+.+. .+ +......++.+.++|...
T Consensus 208 d~~~~GK~~g~Dl~egK~T~p~i~al~~~-~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~ 286 (315)
T 3tc1_A 208 DAKTLGKPNFSDFKEGKTTLPYLLLYEKL-NQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEA 286 (315)
T ss_dssp CTTCCCCCCCCTGGGTCCCHHHHHHHTTS-CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHhCCChhhHHHcCChhHHHHHHHHhC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 56889999999976544432 222 12 2222222222 22 233445578888889988
Q ss_pred hhhccc
Q 044623 419 VTELSE 424 (486)
Q Consensus 419 l~~Lp~ 424 (486)
+..+|+
T Consensus 287 L~~lp~ 292 (315)
T 3tc1_A 287 IKGENN 292 (315)
T ss_dssp TTTTCC
T ss_pred HHhCCC
Confidence 888876
No 29
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=92.95 E-value=0.33 Score=48.44 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhccCC-CCCCHHHHHHHHHhhhhHHHHHHHhhhCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhH----
Q 044623 288 FRDMIEGMRMDLRKS-RYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDV---- 362 (486)
Q Consensus 288 l~~mIegm~~DL~~~-~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv---- 362 (486)
..+|+.|...|+... ...|++++..-+++-.|.+..+.+.+...-.+... +...+.+.++|.|+|+.+=+-|+
T Consensus 136 ~~~~~~GQ~~dl~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~--~~l~~~g~~lG~aFQi~DD~lD~~~d~ 213 (299)
T 1v4e_A 136 IGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG--EDLYNLGVTIGTIYQMFDDIMDFAGME 213 (299)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC--HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhhhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 578999999998532 22789998888888777777666554321101011 45678999999999999888886
Q ss_pred ------HHHHHcCCCCCCHHh
Q 044623 363 ------GEDAQRGRVYLPQDE 377 (486)
Q Consensus 363 ------~EDl~rGRiYLP~d~ 377 (486)
+.|++.|.+-||.=.
T Consensus 214 ~~GK~~g~Dl~egK~T~p~l~ 234 (299)
T 1v4e_A 214 KIGKDGFLDLKNGVASFPLVT 234 (299)
T ss_dssp SCCTTSSCCCTTTTCCHHHHH
T ss_pred ccCCCcchHhhCCCchHHHHH
Confidence 456667888888653
No 30
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=92.79 E-value=1.1 Score=45.95 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhhccCCC---CCCH-HHHHHHHHhhhhHH-HHHHHh---hh-CCCCCCccchhhHHHHHHHHHHHHHHHH
Q 044623 287 PFRDMIEGMRMDLRKSR---YKNF-DELYLYCYYVAGTV-GLMSVP---VM-GIAPDSQATTESVYNAALALGIANQLTN 357 (486)
Q Consensus 287 ~l~~mIegm~~DL~~~~---~~T~-~DL~~Yc~~VAGtV-G~Lll~---il-g~~~~~~a~~e~~~~~A~~LG~ALQLTN 357 (486)
...+|+.|...|+.... -.+. +++..=+.+=.|.. ..+.+. ++ |.+++. ...+.+.....+||.|+|+.+
T Consensus 176 ~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~-~~~~~l~~~g~~lG~aFQI~D 254 (368)
T 2her_A 176 SIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSS-AQLNLIEAILYKLGEFYQVHN 254 (368)
T ss_dssp HHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCC-SSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999997653 3344 55554455555554 333332 23 322221 003456789999999999999
Q ss_pred HHHhH------HHHHHcCCCCCCHHhHHhcCCChhh---hhc--cCCCHHHHHHH------HHHHHHHHHHHHHHHHhhh
Q 044623 358 ILRDV------GEDAQRGRVYLPQDELAQAGLSDDD---IFA--GEVTNKWRNFM------KNQIKRARMFFDMAENGVT 420 (486)
Q Consensus 358 ILRDv------~EDl~rGRiYLP~d~L~k~Gvs~ed---L~~--g~~~~~~r~li------~~la~rAr~~l~~A~~~l~ 420 (486)
=+-|+ +.|++.|.+-||.=..-+. .++++ |.. +..++++++++ ......++.++++|...+.
T Consensus 255 D~LD~~~~GK~g~Dl~egK~T~pvi~al~~-a~~~~r~~L~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~ 333 (368)
T 2her_A 255 DVSDYLFNDSNADDICRFKLTWPLQKSFEI-ADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVK 333 (368)
T ss_dssp HHHHHHSCCSSSCTTTTTCCCHHHHSSTTT-CCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCChHhCCcccHHHHHHHHh-CCHHHHHHHHHHhCCcHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHH
Confidence 88887 4788899998886532221 12221 111 11114555544 3344567888999999999
Q ss_pred hcccc
Q 044623 421 ELSEA 425 (486)
Q Consensus 421 ~Lp~~ 425 (486)
.+|..
T Consensus 334 ~lp~~ 338 (368)
T 2her_A 334 DITDD 338 (368)
T ss_dssp TCSCH
T ss_pred hCCCc
Confidence 88874
No 31
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=92.62 E-value=1.2 Score=44.75 Aligned_cols=133 Identities=12% Similarity=0.049 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhhccC---C-CCCCHHHHHHHHHhhhhHH-HHHHHhhh---CCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 044623 287 PFRDMIEGMRMDLRK---S-RYKNFDELYLYCYYVAGTV-GLMSVPVM---GIAPDSQATTESVYNAALALGIANQLTNI 358 (486)
Q Consensus 287 ~l~~mIegm~~DL~~---~-~~~T~~DL~~Yc~~VAGtV-G~Lll~il---g~~~~~~a~~e~~~~~A~~LG~ALQLTNI 358 (486)
...+|+.|...|+.. . .-.|++++..-+++-.|.+ ..+.+.+. +-.++. .. ..+...++|.|+|+.+=
T Consensus 138 ~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~---~~-l~~~g~~lG~aFQi~DD 213 (330)
T 1wmw_A 138 VVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPP---AA-YEEGGLRLGTAFQIVDD 213 (330)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCC---HH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHH---HH-HHHHHHHHHHHHHHHHc
Confidence 357899999999864 2 3468999888888877777 66665543 222221 12 67899999999999988
Q ss_pred HHhH----------HHHHHcCCCCCCHHhHHhcCCChh------hhhcc-CC---CHHH---HHHH------HHHHHHHH
Q 044623 359 LRDV----------GEDAQRGRVYLPQDELAQAGLSDD------DIFAG-EV---TNKW---RNFM------KNQIKRAR 409 (486)
Q Consensus 359 LRDv----------~EDl~rGRiYLP~d~L~k~Gvs~e------dL~~g-~~---~~~~---r~li------~~la~rAr 409 (486)
+-|+ +.|++.|.+-||.=..-+.. +++ .++.. .. .+.+ ++++ ...-..++
T Consensus 214 ~ld~~~d~~~GK~~g~Dl~egK~T~p~i~al~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~ 292 (330)
T 1wmw_A 214 VLNLEGGEAYGKERAGDLYEGKRTLILLRFLEEA-PPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAK 292 (330)
T ss_dssp HHHHSCSCCCSSSTTHHHHHTCCCHHHHHHHHHS-CHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred cCcccCCcccCCCcCchhhCCCCCHHHHHHHHhC-CHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 8886 68999999999985433322 211 11211 11 1222 2222 22235577
Q ss_pred HHHHHHHHhhh----hccc
Q 044623 410 MFFDMAENGVT----ELSE 424 (486)
Q Consensus 410 ~~l~~A~~~l~----~Lp~ 424 (486)
.+.++|...+. .+|.
T Consensus 293 ~~~~~A~~~L~~~i~~lp~ 311 (330)
T 1wmw_A 293 RLQAEGLALLEAAFQDLPG 311 (330)
T ss_dssp HHHHHHHHHHHTGGGGCSC
T ss_pred HHHHHHHHHHHHHhhcCCC
Confidence 88888888887 7764
No 32
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=92.59 E-value=0.91 Score=46.61 Aligned_cols=135 Identities=10% Similarity=0.054 Sum_probs=83.6
Q ss_pred HHHHHHHHHhhccCCC---C----CCHHHHHHHHHhhhhHH-HHHHHhh---hCC-CCCCccchhhHHHHHHHHHHHHHH
Q 044623 288 FRDMIEGMRMDLRKSR---Y----KNFDELYLYCYYVAGTV-GLMSVPV---MGI-APDSQATTESVYNAALALGIANQL 355 (486)
Q Consensus 288 l~~mIegm~~DL~~~~---~----~T~~DL~~Yc~~VAGtV-G~Lll~i---lg~-~~~~~a~~e~~~~~A~~LG~ALQL 355 (486)
..+++.|...|+.... . .|++++..-+.+=.|.. ..+.+.+ ++- .+ ....+.+.+.+.+||.|+|+
T Consensus 185 ~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~--~~~~~~l~~~g~~lG~aFQI 262 (374)
T 2qis_A 185 SYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDG--EKEHANAKKILLEMGEFFQI 262 (374)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCC--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHHHHHHH
Confidence 4778999999986532 2 58899888888877777 5554443 222 22 22234467889999999999
Q ss_pred HHHHHhHH----------HHHHcCCCCCCHHhHHhcCCChh--h-h---hccCCCHH---HHHHHHH------HHHHHHH
Q 044623 356 TNILRDVG----------EDAQRGRVYLPQDELAQAGLSDD--D-I---FAGEVTNK---WRNFMKN------QIKRARM 410 (486)
Q Consensus 356 TNILRDv~----------EDl~rGRiYLP~d~L~k~Gvs~e--d-L---~~g~~~~~---~r~li~~------la~rAr~ 410 (486)
.+=+-|+- .|++.|.+-||.=..-+.. +++ + | +.....+. +++++.. ....++.
T Consensus 263 ~DDiLD~~gd~~~~GK~g~Dl~~gK~T~p~l~al~~a-~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~ 341 (374)
T 2qis_A 263 QDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRA-TPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEED 341 (374)
T ss_dssp HHHHHHHHSCHHHHCSCCCTTTTTCCCHHHHHHHHHC-CHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHccCChhhcCCchhHHHcCCccHHHHHHHHhC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHH
Confidence 99888874 4677899988875432221 221 1 2 11111222 2233221 2333777
Q ss_pred HHHHHHHhhhhcccc
Q 044623 411 FFDMAENGVTELSEA 425 (486)
Q Consensus 411 ~l~~A~~~l~~Lp~~ 425 (486)
++++|...+..+|..
T Consensus 342 ~~~~a~~~L~~lp~~ 356 (374)
T 2qis_A 342 SYSHIMALIEQYAAP 356 (374)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCCc
Confidence 888888888888754
No 33
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=92.43 E-value=0.66 Score=47.54 Aligned_cols=135 Identities=13% Similarity=0.087 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhccCCC-------CCCHHHHHHHHHhhhhHH-HHHHHhh---h-CCCCCCccchhhHHHHHHHHHHHHHH
Q 044623 288 FRDMIEGMRMDLRKSR-------YKNFDELYLYCYYVAGTV-GLMSVPV---M-GIAPDSQATTESVYNAALALGIANQL 355 (486)
Q Consensus 288 l~~mIegm~~DL~~~~-------~~T~~DL~~Yc~~VAGtV-G~Lll~i---l-g~~~~~~a~~e~~~~~A~~LG~ALQL 355 (486)
..+|+.|...|+.... -.|++++..-+.+=.|.. ..+.+.+ + |..+ ....+.+.+.+.+||.|+|+
T Consensus 178 ~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~--~~~~~~l~~~g~~lG~aFQI 255 (367)
T 1uby_A 178 AYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDS--KEEHENAKAILLEMGEYFQI 255 (367)
T ss_dssp HHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCC--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCcc--HHHHHHHHHHHHHHHHHHHH
Confidence 4678899999985432 358888877777766666 4444332 2 2122 12234567889999999999
Q ss_pred HHHHHhHH----------HHHHcCCCCCCHHhHHhcCCChhh---h---hccCCCHH---HHHHHHH------HHHHHHH
Q 044623 356 TNILRDVG----------EDAQRGRVYLPQDELAQAGLSDDD---I---FAGEVTNK---WRNFMKN------QIKRARM 410 (486)
Q Consensus 356 TNILRDv~----------EDl~rGRiYLP~d~L~k~Gvs~ed---L---~~g~~~~~---~r~li~~------la~rAr~ 410 (486)
.+=+-|+- .|++.|.+-||.=..-+.. ++++ | +.....+. +++++.. .-..++.
T Consensus 256 ~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~-~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~ 334 (367)
T 1uby_A 256 QDDYLDCFGDPALTGAVGTDIQDNKCSWLVVQCLQRV-TPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEES 334 (367)
T ss_dssp HHHHHHHHCCTTCSSCCCCCSSSCCCCHHHHHHHHHC-CHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhcCChhhcCCchhhHHcCCchHHHHHHHHhC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99888884 4778899999875432221 2221 2 11111122 2222221 1134777
Q ss_pred HHHHHHHhhhhcccc
Q 044623 411 FFDMAENGVTELSEA 425 (486)
Q Consensus 411 ~l~~A~~~l~~Lp~~ 425 (486)
++++|...+..+|+.
T Consensus 335 ~~~~A~~~L~~lp~~ 349 (367)
T 1uby_A 335 SYRRLQELIEKHSNR 349 (367)
T ss_dssp HHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhCCCc
Confidence 888888888888754
No 34
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=92.01 E-value=0.72 Score=45.95 Aligned_cols=124 Identities=17% Similarity=0.184 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhccCCC-CCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 044623 288 FRDMIEGMRMDLRKSR-YKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDVGED 365 (486)
Q Consensus 288 l~~mIegm~~DL~~~~-~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv~ED 365 (486)
..+|+.|...|+.... ..|.+++..-+++-.|.+..+.+.+... ...+....+...+.+.++|.|+|+.+=+-|+--|
T Consensus 136 ~~~~~~GQ~~dl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~ 215 (295)
T 3ipi_A 136 GMDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEV 215 (295)
T ss_dssp HHHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4579999999987542 3577888777777777777666654321 1112222344678899999999999988888554
Q ss_pred -----HHcCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 044623 366 -----AQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEA 425 (486)
Q Consensus 366 -----l~rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp~~ 425 (486)
...|.+-+|.=...+ ..+ ...+..--+.|+.+.++|...+..+|+.
T Consensus 216 ~~gkd~~~gk~Tlp~l~al~------------~~~--~~~le~a~~~a~~~~~~A~~~L~~lp~~ 266 (295)
T 3ipi_A 216 VEGKESKFTSETLPHIYMKS------------TSK--EEALKKSIDCVKLHVAAAKETLETFREC 266 (295)
T ss_dssp HHC-------CCHHHHHTTT------------SCH--HHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred ccCCCcccCcccHHHHHHHh------------cCc--hhHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 334444444322111 111 1236666678899999999999988753
No 35
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=91.48 E-value=2.4 Score=42.00 Aligned_cols=111 Identities=11% Similarity=0.072 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHhhhhHHHHHHHhh---hCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHH
Q 044623 288 FRDMIEGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPV---MGIAPDSQATTESVYNAALALGIANQLTNILRDVGE 364 (486)
Q Consensus 288 l~~mIegm~~DL~~~~~~T~~DL~~Yc~~VAGtVG~Lll~i---lg~~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv~E 364 (486)
..+|+.|...|+.. .+++....++-.|....+.+.+ ++ .+ ....+...+.+.++|.|+|+.+=+-|+-.
T Consensus 144 ~~~~~~GQ~~dl~~-----~~~y~~~i~~KTa~L~~~a~~~ga~la-~~--~~~~~~l~~~g~~lG~aFQi~DDilD~~~ 215 (289)
T 2azj_A 144 WKDTSVGALRDMYD-----NSDYIRTIELKTGSLFKLSTVLSAYAS-KH--YNTKQQMLDVGKYLGIIYQVIDDFVDYKT 215 (289)
T ss_dssp HHHHHHHHHHTTTT-----TSCHHHHHHHHTHHHHHHHHHHHHHHT-TC--GGGHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh-----HHHHHHHHHcchHHHHHHHHHHHHHHc-CC--HHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 57899999999974 5666666666666666555543 34 32 22334567899999999999988777743
Q ss_pred H----HHcCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 044623 365 D----AQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSE 424 (486)
Q Consensus 365 D----l~rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp~ 424 (486)
| +..|.+-+|.=. .+.| ...++ -..|+.+.++|...+..+|.
T Consensus 216 ~~K~dl~~gk~Tlp~l~-~~~g--------------~~~a~---~~~a~~~~~~A~~~L~~lp~ 261 (289)
T 2azj_A 216 KKVEEIDGSAKQLFKYY-REGK--------------LEEYV---RSVYLEYKQKYDELISNIPF 261 (289)
T ss_dssp SCTTTCCTTGGGGHHHH-TTTC--------------HHHHH---HHHHHHHHHHHHHHHHTSCC
T ss_pred CCChhhhcCcccHHHHH-HcCC--------------HHHHH---HHHHHHHHHHHHHHHHhCCC
Confidence 2 222323333221 1111 11111 24788999999999988876
No 36
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=91.39 E-value=0.52 Score=47.84 Aligned_cols=124 Identities=19% Similarity=0.129 Sum_probs=73.4
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 044623 289 RDMIEGMRMDLRKS-RYKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDVGEDA 366 (486)
Q Consensus 289 ~~mIegm~~DL~~~-~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv~EDl 366 (486)
.+|+.|...|+... .-.|++++..-.++-.|.+..+.+.+-.+ ...+....+...+.+.++|.|+|+.+=+-|+--|-
T Consensus 192 ~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 271 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADA 271 (335)
T ss_dssp TSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 56888888887532 24688999888888888777666554321 11111223456788999999999998887773321
Q ss_pred H-cCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 044623 367 Q-RGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSE 424 (486)
Q Consensus 367 ~-rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp~ 424 (486)
. .|. | .-+|+..|+.+=-+.-.+..--..++.+.++|...+..+|.
T Consensus 272 ~~~GK---~---------~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~~ 318 (335)
T 2h8o_A 272 ATMGK---A---------TGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGE 318 (335)
T ss_dssp --------------------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred HHhCC---C---------cchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 1 111 0 01233334433333333455667788889999988888875
No 37
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=91.23 E-value=1 Score=45.14 Aligned_cols=124 Identities=16% Similarity=0.111 Sum_probs=75.2
Q ss_pred HHHHHHHHhhccCCC-CCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 044623 289 RDMIEGMRMDLRKSR-YKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDVGEDA 366 (486)
Q Consensus 289 ~~mIegm~~DL~~~~-~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv~EDl 366 (486)
..|+.|...|+.... -.|.+++..-+++-.|.+..+.+.+..+ ...+....+...+.+.++|.|+|+.+=+-|+--|-
T Consensus 155 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~ 234 (309)
T 3pde_A 155 SGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSP 234 (309)
T ss_dssp TTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 468889999986542 3588898877777777777666554321 11122233456789999999999998777774321
Q ss_pred HcCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 044623 367 QRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELS 423 (486)
Q Consensus 367 ~rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp 423 (486)
+.+.|- .-+|+..|+.+=-+.-.+..--..++.++++|...+..+|
T Consensus 235 ---------~~~GK~--~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~~ 280 (309)
T 3pde_A 235 ---------AEMGKA--TQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGLP 280 (309)
T ss_dssp ---------------------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ---------HHhCCC--ccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 111110 1245556666544444555555677788888887777643
No 38
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=91.17 E-value=10 Score=36.43 Aligned_cols=185 Identities=11% Similarity=0.063 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCcHHHHHHHHHHHHHHHcCC--C--CCHHHHHHHHHHHhCCC--C---hHHH
Q 044623 218 SERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGR--P--FDMLDAALSDTVTKFPV--D---IQPF 288 (486)
Q Consensus 218 ~e~R~ai~ALYAF~R~lDdIvDd~~~~~i~~~~L~~Wrd~Le~~f~G~--p--~~pv~~aL~~~v~~~~L--p---~~~l 288 (486)
+++...+.-+.+|.-.+||+-|..+. ..+..+-+.+.++..|. | .+|+..+|.++..+..- + +..+
T Consensus 59 ~~rl~~~~k~~~~~~~~DD~~D~~~~-----~e~~~~~~~~~~~~~~~~lp~~~~~~~~~l~d~~~~~~~~~~~~~~~~~ 133 (300)
T 1di1_A 59 DDRIHFACRLLTVLFLIDDVLEHMSF-----ADGEAYNNRLIPISRGDVLPDRTKPEEFILYDLWESMRAHDAELANEVL 133 (300)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHSCH-----HHHHHHHHHHHHHHHTSSCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCH-----HHHHHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 44444677788888899999997431 22445556666665543 2 25677777666554311 0 1223
Q ss_pred HHHHHHHHh--hccCCCCCCHHHHHHHHHhhhhHHHHHHHhh--hCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHH
Q 044623 289 RDMIEGMRM--DLRKSRYKNFDELYLYCYYVAGTVGLMSVPV--MGIAPDSQATTESVYNAALALGIANQLTNILRDVGE 364 (486)
Q Consensus 289 ~~mIegm~~--DL~~~~~~T~~DL~~Yc~~VAGtVG~Lll~i--lg~~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv~E 364 (486)
..++.++.. +.....++|++|+..+-..+.|.--.+.+-. +|..-. ....+.........+...-++|=|-....
T Consensus 134 ~~~~~~~~ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~-~e~~~~~~~l~~~~~~~~~l~NDl~S~~k 212 (300)
T 1di1_A 134 EPTFVFMRAQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSMGLRLS-ADELQDMKALEANCAKQLSVVNDIYSYDK 212 (300)
T ss_dssp HHHHHHHHTTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCC-HHHHHTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhccccCCCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 445555532 1222467899999998888877544333322 343211 11111222344455555555554444443
Q ss_pred HHHcCCC---------CCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044623 365 DAQRGRV---------YLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAEN 417 (486)
Q Consensus 365 Dl~rGRi---------YLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~ 417 (486)
...+|-. -.-.=++.++|++.++ ..+.+..++..+.+.+.....
T Consensus 213 E~~~g~~~h~~~~~~~n~V~~~m~~~g~s~ee---------A~~~~~~~i~~~~~~~~~~~~ 265 (300)
T 1di1_A 213 EEEASRTGHKEGAFLCSAVKVLAEESKLGIPA---------TKRVLWSMTREWETVHDEIVA 265 (300)
T ss_dssp TCCC----------CCCHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccccccccccchhHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 3444431 2333456777777644 555667777777666666654
No 39
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=90.83 E-value=3 Score=41.26 Aligned_cols=113 Identities=14% Similarity=0.164 Sum_probs=68.0
Q ss_pred HHHHHHHhhccCCCC----CCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhHHH
Q 044623 290 DMIEGMRMDLRKSRY----KNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDVGE 364 (486)
Q Consensus 290 ~mIegm~~DL~~~~~----~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv~E 364 (486)
+|+.|...|+....- .|++++..-+.+-.|.+..+.+.+... ...+....+...+.+.++|.|+|+.+=+-|+-.
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~ 240 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTK 240 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 588999999975431 245555555555566666555544321 111222234566889999999999988888765
Q ss_pred HHHcCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCc
Q 044623 365 DAQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEASR 427 (486)
Q Consensus 365 Dl~rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp~~sr 427 (486)
|- ..-+|. .-.+..--+.|+.+.++|...+..+|...+
T Consensus 241 ~~---K~T~p~----------------------l~gle~a~~~a~~~~~~A~~~L~~l~~~~~ 278 (293)
T 2j1p_A 241 SS---KLTYPK----------------------LMGLEKSREFAEKLNTEARDQLLGFDSDKV 278 (293)
T ss_dssp -----CCCHHH----------------------HHHHHHHHHHHHHHHHHHHHHTTTSCTTTT
T ss_pred Cc---cccHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 54 222221 113445556788888999988888874333
No 40
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=90.79 E-value=1.9 Score=44.61 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=80.9
Q ss_pred HHHHHHHHHhhcc------------------CC----C----CCCHHHHHHHHHhhhhHH-HHHHHh---hhCCCCCCcc
Q 044623 288 FRDMIEGMRMDLR------------------KS----R----YKNFDELYLYCYYVAGTV-GLMSVP---VMGIAPDSQA 337 (486)
Q Consensus 288 l~~mIegm~~DL~------------------~~----~----~~T~~DL~~Yc~~VAGtV-G~Lll~---ilg~~~~~~a 337 (486)
..+|+.|...|+. .. . -.|++++..-+.+=.|.. ..+.+. +++..++...
T Consensus 187 ~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~ 266 (395)
T 2ihi_A 187 TLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNL 266 (395)
T ss_dssp HHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCT
T ss_pred HHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhH
Confidence 4788999999992 11 1 347888877666666654 322222 3332222110
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhH----------HHHHHcCCCCCCHHhHHhcCCChhh---h---hccCCCHH---HH
Q 044623 338 TTESVYNAALALGIANQLTNILRDV----------GEDAQRGRVYLPQDELAQAGLSDDD---I---FAGEVTNK---WR 398 (486)
Q Consensus 338 ~~e~~~~~A~~LG~ALQLTNILRDv----------~EDl~rGRiYLP~d~L~k~Gvs~ed---L---~~g~~~~~---~r 398 (486)
..+.+...+.+||.|+|+.+=+-|+ +.|++.|.+-||.=..-+.. ++++ | +.....+. ++
T Consensus 267 ~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~-~~~~~~~L~~~~~~~~~~~~~~v~ 345 (395)
T 2ihi_A 267 IYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELC-SEPDKIKIVKNYGKNNLACVKVID 345 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC---------CTTTTTCCCHHHHHHHHHC-CHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhcCCchHHHHHHHHhC-CHHHHHHHHHHhCCCCHHHHHHHH
Confidence 0345678999999999999988886 56888999988876433322 2221 2 21122222 22
Q ss_pred H------HHHHHHHHHHHHHHHHHHhhhhccc
Q 044623 399 N------FMKNQIKRARMFFDMAENGVTELSE 424 (486)
Q Consensus 399 ~------li~~la~rAr~~l~~A~~~l~~Lp~ 424 (486)
. .+......++.++++|...+..+|+
T Consensus 346 ~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~ 377 (395)
T 2ihi_A 346 SLYEQYKIRKHYESYEKAQKAKILSAINELHH 377 (395)
T ss_dssp HC----CHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2 2334445677888888888888877
No 41
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=90.31 E-value=0.8 Score=45.53 Aligned_cols=124 Identities=22% Similarity=0.213 Sum_probs=75.2
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHhhhhHHHHHHHhhhCCC-CC-CccchhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 044623 289 RDMIEGMRMDLRKS-RYKNFDELYLYCYYVAGTVGLMSVPVMGIA-PD-SQATTESVYNAALALGIANQLTNILRDVGED 365 (486)
Q Consensus 289 ~~mIegm~~DL~~~-~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~-~~-~~a~~e~~~~~A~~LG~ALQLTNILRDv~ED 365 (486)
.+|+.|...|+... ...|++++..-+.+-.|....+.+.+...- .. +....+...+.+.++|.|+|+.+=+-|+--|
T Consensus 152 ~~~~~GQ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~ 231 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGD 231 (299)
T ss_dssp TTHHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHhHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 46789999998653 245888888888777777776666553322 11 1112334667899999999999877776432
Q ss_pred HH-cCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 044623 366 AQ-RGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSE 424 (486)
Q Consensus 366 l~-rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp~ 424 (486)
-. .|. | .-+|+..|+.+=-+.-.+...-..++.+.++|...+..+|.
T Consensus 232 ~~~~GK---~---------~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~l~~ 279 (299)
T 1rqj_A 232 TATLGK---R---------QGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAE 279 (299)
T ss_dssp HHHHSS---C---------TTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCC---C---------hhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 21 111 0 01233333333222223344456778888888888877765
No 42
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=89.68 E-value=0.22 Score=49.67 Aligned_cols=112 Identities=22% Similarity=0.212 Sum_probs=69.3
Q ss_pred HHHHHHHHhhccCC---CCCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhH--
Q 044623 289 RDMIEGMRMDLRKS---RYKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDV-- 362 (486)
Q Consensus 289 ~~mIegm~~DL~~~---~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv-- 362 (486)
..|+.|...|+... .-.|.+++..-+++-.|.+..+.+.+..+ ...+. +...+.+.++|.|+|+.+=+-|+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQI~DDilD~~~ 223 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADR---GPLTAYATALGLAFQIADDILDVEG 223 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHTTCC----
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 46889999998643 34688998887777777777666554321 11111 14678999999999998755555
Q ss_pred ---------HHHHHcCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 044623 363 ---------GEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEA 425 (486)
Q Consensus 363 ---------~EDl~rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp~~ 425 (486)
+.|++.|.+-||.= -.+..--..++.+.++|...+..+|..
T Consensus 224 ~~~~~GK~~g~Dl~~gK~T~p~l----------------------~~l~~a~~~~~~~~~~A~~~L~~~~~~ 273 (297)
T 3m0g_A 224 NEEAAGKRLGKDAEAHKATFVSL----------------------LGLAGAKSRAADLVAEAEAALAPYGEA 273 (297)
T ss_dssp -----------------CCHHHH----------------------HCSSHHHHHHHHHHHHHHHHTGGGGGG
T ss_pred CHHHhCCCccchhhcCCccHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444455444433 233444566888888888888888764
No 43
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=89.22 E-value=10 Score=40.87 Aligned_cols=178 Identities=16% Similarity=0.144 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCcHHHHHHHHHHHHHHHc---CCCC---CHHHHHHHHHHHhC--------CCC--
Q 044623 221 RRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFR---GRPF---DMLDAALSDTVTKF--------PVD-- 284 (486)
Q Consensus 221 R~ai~ALYAF~R~lDdIvDd~~~~~i~~~~L~~Wrd~Le~~f~---G~p~---~pv~~aL~~~v~~~--------~Lp-- 284 (486)
|..+.=+.+|.-.+||+-|... +...|+.+-+.++..-. +..| .++..+|.+++.+. +..
T Consensus 288 Rl~~aK~~~l~tviDD~yD~~g----t~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~ 363 (549)
T 1n1b_A 288 RKMAATIIVLATVIDDIYDVYG----TLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCL 363 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence 5555556666678899988753 23345556666654311 1112 23445665555432 111
Q ss_pred ---hHHHHHHHHHHHhhc---cCCCCCCHHHHHHHHHhhhhHHHHHHHhhhCCCCCCccchhhH-H-------HHHHHHH
Q 044623 285 ---IQPFRDMIEGMRMDL---RKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESV-Y-------NAALALG 350 (486)
Q Consensus 285 ---~~~l~~mIegm~~DL---~~~~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~~~~~a~~e~~-~-------~~A~~LG 350 (486)
++.+.++++++.... .....+|++|+......+.|..-.++...++..+..+ +++ . ......+
T Consensus 364 ~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt---~e~~~e~~~~~p~i~~~~~ 440 (549)
T 1n1b_A 364 QYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASH---DTAVIDSLYQYHDILCLAG 440 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCC---CHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCc---HHHHHhhhcccHHHHHHHH
Confidence 233456666665333 3345689999999988888765555555555433211 112 1 2334444
Q ss_pred HHHHHHHHHHhHHHHHHcCCCCCCHH---hHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044623 351 IANQLTNILRDVGEDAQRGRVYLPQD---ELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAE 416 (486)
Q Consensus 351 ~ALQLTNILRDv~EDl~rGRiYLP~d---~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~ 416 (486)
..+-+.|=|........+|-+ +.- .|.++|++.++ +.+-+..++..+.+-+.+..
T Consensus 441 ~i~RL~NDi~S~~~E~~rG~v--~n~V~cyMke~g~s~ee---------A~~~i~~~i~~~wk~ln~e~ 498 (549)
T 1n1b_A 441 IILRLPDDLGTSYFELARGDV--PKTIQCYMKETNASEEE---------AVEHVKFLIREAWKDMNTAI 498 (549)
T ss_dssp HHHHHHHHHC---------CC--CCHHHHHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhhhhccCCc--cHHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 444444544444555555653 332 57788887654 55677888888888777753
No 44
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=88.16 E-value=3.3 Score=40.93 Aligned_cols=120 Identities=14% Similarity=0.095 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhccCC--C-CCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 044623 288 FRDMIEGMRMDLRKS--R-YKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDVG 363 (486)
Q Consensus 288 l~~mIegm~~DL~~~--~-~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv~ 363 (486)
..+|+.|...|+... . -.|++++..-+++-.|.+..+.+.+... ...+. +...+.+.++|.|+|+.+=+-|+-
T Consensus 143 ~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQI~DD~lD~~ 219 (284)
T 2ftz_A 143 AYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDH---TXMXLLGEXFGVAFQIYDDLXDIL 219 (284)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHHHHHHhhhhhc
Confidence 478899999998542 2 4689999988888888887766654321 11111 146789999999999998888876
Q ss_pred HHHH-cCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 044623 364 EDAQ-RGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSE 424 (486)
Q Consensus 364 EDl~-rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp~ 424 (486)
-|-. .|.- .- +|+. +.+--+.-.+..--..|+.+.++|...+..+|.
T Consensus 220 ~d~~~~GK~-~g-----------~Dl~--K~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 267 (284)
T 2ftz_A 220 GSFEKVGKD-LG-----------KDTE--XVTLVXXVGIQXAREMADXYYEEVLXGIESEGL 267 (284)
T ss_dssp HHCCCC-------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHhhCCC-cc-----------hhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 5532 2221 00 1222 112112222444566788888888888887774
No 45
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=87.32 E-value=3.4 Score=42.65 Aligned_cols=136 Identities=11% Similarity=0.054 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhccCC------------------CCCCHHHHHHHHHhhhhHH-HHHHHhh---hCCCCCCccchhhHHHH
Q 044623 288 FRDMIEGMRMDLRKS------------------RYKNFDELYLYCYYVAGTV-GLMSVPV---MGIAPDSQATTESVYNA 345 (486)
Q Consensus 288 l~~mIegm~~DL~~~------------------~~~T~~DL~~Yc~~VAGtV-G~Lll~i---lg~~~~~~a~~e~~~~~ 345 (486)
..+++.|...|+... .-.|++++..-+++=.|.. ..+.+.+ ++-.++. ...+.+.+.
T Consensus 188 ~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~-~~~~~l~~~ 266 (390)
T 3dyh_A 188 DYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPT-VDMGVTEEL 266 (390)
T ss_dssp HHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGG-SCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChH-HHHHHHHHH
Confidence 467889999998651 1357888877777776765 4444332 3222111 012346789
Q ss_pred HHHHHHHHHHHHHHHhHH----------HHHHcCCCCCCHHhHHhcCCChhh---h---hccCCCHH---HHHHH-----
Q 044623 346 ALALGIANQLTNILRDVG----------EDAQRGRVYLPQDELAQAGLSDDD---I---FAGEVTNK---WRNFM----- 401 (486)
Q Consensus 346 A~~LG~ALQLTNILRDv~----------EDl~rGRiYLP~d~L~k~Gvs~ed---L---~~g~~~~~---~r~li----- 401 (486)
..+||.|+|+.+=+-|+- .|++.|.+-||.=..-+.. ++++ | +.....+. +++++
T Consensus 267 g~~lGlaFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~pvi~al~~~-~~~~r~~L~~~~~~~~~~~v~~v~~l~~~~g~ 345 (390)
T 3dyh_A 267 AMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKA-SSAQVAEFKANYGSGDSEKVATVRRLYEEADL 345 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHHHC-CHHHHHHHHTTTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHhhcCChHHhCCCcchhhcCCccHHHHHHHHhC-CHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCc
Confidence 999999999999888884 4888999988865433332 2221 2 22222222 22222
Q ss_pred -HHHHHHHHHHHHHHHHhhhhcccc
Q 044623 402 -KNQIKRARMFFDMAENGVTELSEA 425 (486)
Q Consensus 402 -~~la~rAr~~l~~A~~~l~~Lp~~ 425 (486)
..-...++.+++++...+..||..
T Consensus 346 ~~~~~~~~~~~~~~a~~~i~~l~~~ 370 (390)
T 3dyh_A 346 QGDYVAYEAAVAEQVKELIEKLRLC 370 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 222333567777778777777653
No 46
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=83.57 E-value=9.2 Score=39.28 Aligned_cols=137 Identities=14% Similarity=0.108 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhccCCC--------------------------CCCHHHHHHHHHhhhhHH-HHHHHh---hhCCCCCCcc
Q 044623 288 FRDMIEGMRMDLRKSR--------------------------YKNFDELYLYCYYVAGTV-GLMSVP---VMGIAPDSQA 337 (486)
Q Consensus 288 l~~mIegm~~DL~~~~--------------------------~~T~~DL~~Yc~~VAGtV-G~Lll~---ilg~~~~~~a 337 (486)
..+|+.|...|+.... -.|++++..=+++=.|.. ..+.+. +++.......
T Consensus 187 ~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~ 266 (395)
T 3mav_A 187 TLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNL 266 (395)
T ss_dssp HHHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCT
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhH
Confidence 4678888888874311 126677766555555544 332222 2222211112
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhH----------HHHHHcCCCCCCHHhHHhcCCChhh---hhc--cCCCHH----HH
Q 044623 338 TTESVYNAALALGIANQLTNILRDV----------GEDAQRGRVYLPQDELAQAGLSDDD---IFA--GEVTNK----WR 398 (486)
Q Consensus 338 ~~e~~~~~A~~LG~ALQLTNILRDv----------~EDl~rGRiYLP~d~L~k~Gvs~ed---L~~--g~~~~~----~r 398 (486)
..+.+.+.+.++|+|+|+.+=+-|+ +.|++.|.+-||.=..-+.. ++++ |.. ++.++. ++
T Consensus 267 ~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~p~i~al~~~-~~~~r~~L~~~~~~~d~~~~~~v~ 345 (395)
T 3mav_A 267 IYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELC-SEPDKIKIVKNYGKNNLACVKVID 345 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCTTTTTCCCHHHHHHHHHS-CHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHhcCCchHHHHHHHHhC-CHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2345668899999999999988886 35778888888876433321 2221 211 222222 22
Q ss_pred HHH------HHHHHHHHHHHHHHHHhhhhcccc
Q 044623 399 NFM------KNQIKRARMFFDMAENGVTELSEA 425 (486)
Q Consensus 399 ~li------~~la~rAr~~l~~A~~~l~~Lp~~ 425 (486)
.++ ...-..++.+.+++...+..+|..
T Consensus 346 ~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~ 378 (395)
T 3mav_A 346 SLYEQYKIRKHYESYEKAQKAKILSAINELHHE 378 (395)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCCH
T ss_pred HHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 222 222334667777777777777653
No 47
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=82.75 E-value=36 Score=32.94 Aligned_cols=184 Identities=11% Similarity=0.044 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCcHHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHhCCC-ChHHHHH--
Q 044623 218 SERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGRP----FDMLDAALSDTVTKFPV-DIQPFRD-- 290 (486)
Q Consensus 218 ~e~R~ai~ALYAF~R~lDdIvDd~~~~~i~~~~L~~Wrd~Le~~f~G~p----~~pv~~aL~~~v~~~~L-p~~~l~~-- 290 (486)
+++...+.-+.+|.-.+||+-|..+ ...+..+.+.+..+..|.. .+|+..+|.++..+..- .+...++
T Consensus 73 ~~rl~~~ak~~~~~~~~DD~~D~~~-----~~e~~~~~~~l~~~~~~~~~p~~~~~~~~al~d~~~e~~~~~~~~~~~~~ 147 (320)
T 3bny_A 73 DDRIHFACRLLTVLFLIDDLLEYMS-----FEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEIL 147 (320)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTTSC-----HHHHHHHHHHHHHHHHTSSCCCTTSHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhhcccccCC-----hhhHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 4445567788888899999999843 1224445566666555532 25777777766543310 0122222
Q ss_pred --HHHHHHh--hccCCCCCCHHHHHHHHHhhhhHHHHHHHhh--hCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHH
Q 044623 291 --MIEGMRM--DLRKSRYKNFDELYLYCYYVAGTVGLMSVPV--MGIAPDSQATTESVYNAALALGIANQLTNILRDVGE 364 (486)
Q Consensus 291 --mIegm~~--DL~~~~~~T~~DL~~Yc~~VAGtVG~Lll~i--lg~~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv~E 364 (486)
++..+.. +.....++|++|+..+-..+.|.--.+.+-. +|..-. ....+.........+...-++|=|-....
T Consensus 148 ~~~~~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~-~e~~~~~~~l~~~~~~~~~L~NDl~S~~k 226 (320)
T 3bny_A 148 EPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLS-PSELQRVREIDANCSKHLSVVNDIYSYEK 226 (320)
T ss_dssp HHHHHHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCC-HHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHHHHHHhcccchhHH
Confidence 3332221 1223457899999998888887544333322 343211 11111223455566666666666666665
Q ss_pred HHHcCC---------CCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044623 365 DAQRGR---------VYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAE 416 (486)
Q Consensus 365 Dl~rGR---------iYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~ 416 (486)
...+|- .=.-.=++.++|++.++ ..+.+..++....+.+.+..
T Consensus 227 E~~~g~~~~~~~~~~~N~V~~~m~~~g~s~ee---------A~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 227 ELYTSKTAHSEGGILCTSVQILAQEADVTAEA---------AKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HCC-----------CCSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccccccccchHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 555554 12334467778888654 34455555555555444433
No 48
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=82.64 E-value=13 Score=38.85 Aligned_cols=191 Identities=12% Similarity=-0.004 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHhhhh-cCCCCCCCCc-HHHHHHHHHHHHHH---HcCC-------CCCHHHHHHHHHHHhCC--C
Q 044623 218 SERRRAIWAIYVWCRRTDEL-VDGPNASHIT-PTALDRWESRLEDL---FRGR-------PFDMLDAALSDTVTKFP--V 283 (486)
Q Consensus 218 ~e~R~ai~ALYAF~R~lDdI-vDd~~~~~i~-~~~L~~Wrd~Le~~---f~G~-------p~~pv~~aL~~~v~~~~--L 283 (486)
.+.-..++-+..|.=.+||. .|+....... ..++..++..++.+ ..|. +.+|+..+|.+++++.. .
T Consensus 173 ~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a~~~~d~l~~~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a 252 (433)
T 3v1v_A 173 VDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLAHTAIDHFHSTAEYTPTWQASLAADAPRRAYDSAMGYFVRAA 252 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHHHTTTSCCCCCTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHHHHHHHhhhcccCCCCccccccCCchHHHHHHHHHHHHHhhc
Confidence 55666777777888899999 7873322221 22333333222111 1111 24678888888876542 2
Q ss_pred ChHHH-------HHHHHHHHhhc---cCCCCCCHHHHHHHHHhhhhHHHHHHHh-hhCCCCC-CccchhhHHHHHHHHHH
Q 044623 284 DIQPF-------RDMIEGMRMDL---RKSRYKNFDELYLYCYYVAGTVGLMSVP-VMGIAPD-SQATTESVYNAALALGI 351 (486)
Q Consensus 284 p~~~l-------~~mIegm~~DL---~~~~~~T~~DL~~Yc~~VAGtVG~Lll~-ilg~~~~-~~a~~e~~~~~A~~LG~ 351 (486)
+.... .++++++.... ....++|++|+..+-..+++.....++. .+|..-. .....+.........+.
T Consensus 253 ~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~sg~~p~~~l~e~~~g~~lp~~v~~~p~~~~L~~~~~~ 332 (433)
T 3v1v_A 253 TPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFNNFRPCPTITDTVGGYELPADLHARPDMQRVIALAGN 332 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHSSSTTTGGGHHHHHTCCCCHHHHTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhHHHHHHHHHHHcCCCCCHHHHhCchHHHHHHHHHH
Confidence 33333 34444444332 2246789999999877663322111222 2343211 00011123345566677
Q ss_pred HHHHHHHHHhHHHHHHcC-CC-CCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044623 352 ANQLTNILRDVGEDAQRG-RV-YLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAEN 417 (486)
Q Consensus 352 ALQLTNILRDv~EDl~rG-Ri-YLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~ 417 (486)
..-++|=|-.......+| .+ -+-.=+|.++|++.++ ..+.+..+++.....|.+...
T Consensus 333 i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~g~S~ee---------A~~~v~~~i~~~~~~F~~~~~ 391 (433)
T 3v1v_A 333 ATTIVNDLYSYTKELNSPGRHLNLPVVIAEREQLCERD---------AYLKAVEVHNELQHSFEAAAA 391 (433)
T ss_dssp HHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHhcCCCCCcHHHHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776663 43 4445567788888654 233344444444444444443
No 49
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=82.15 E-value=46 Score=35.64 Aligned_cols=182 Identities=13% Similarity=0.088 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCcHHHHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHHhC--------CCC--
Q 044623 221 RRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFR---GRPFD---MLDAALSDTVTKF--------PVD-- 284 (486)
Q Consensus 221 R~ai~ALYAF~R~lDdIvDd~~~~~i~~~~L~~Wrd~Le~~f~---G~p~~---pv~~aL~~~v~~~--------~Lp-- 284 (486)
|..+.=+.+|.-.+||+-|... +...|+.+-++++..-. +..|+ ++..+|.+++.+. +..
T Consensus 282 Rl~~aK~~~litviDD~fD~~g----t~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~ 357 (543)
T 2ong_A 282 RIMMGKVNALITVIDDIYDVYG----TLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVI 357 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSS----CHHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence 4444446677778999998753 23346656666654321 12222 3555665555432 111
Q ss_pred ---hHHHHHHHHHHHhhc---cCCCCCCHHHHHHHHHhhhhHHHHHHHhhhCCCCCCccc-hh---hHHHHHHHHHHHHH
Q 044623 285 ---IQPFRDMIEGMRMDL---RKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQAT-TE---SVYNAALALGIANQ 354 (486)
Q Consensus 285 ---~~~l~~mIegm~~DL---~~~~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~~~~~a~-~e---~~~~~A~~LG~ALQ 354 (486)
++.+.++++++...+ .....+|++|+......+.|..-.++...++..+..+.. .+ .........+...-
T Consensus 358 ~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~R 437 (543)
T 2ong_A 358 PYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLR 437 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHH
Confidence 233556666665443 344568999999988888776555554444433221100 00 00123344444455
Q ss_pred HHHHHHhHHHHHHcCCCC-CCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 044623 355 LTNILRDVGEDAQRGRVY-LPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMA 415 (486)
Q Consensus 355 LTNILRDv~EDl~rGRiY-LP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A 415 (486)
+.|=|........+|-+- .=.=.|.++|++.++ ..+-+..+++.+.+.+.+.
T Consensus 438 L~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~ee---------A~~~i~~~ie~~wk~ln~e 490 (543)
T 2ong_A 438 LADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAE---------ARKHVKWLIAEVWKKMNAE 490 (543)
T ss_dssp HHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HhcccchhhhccccCCccHHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 556566666666666641 112257778887654 4556778888887777764
No 50
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=81.82 E-value=8.4 Score=38.50 Aligned_cols=122 Identities=14% Similarity=0.053 Sum_probs=73.8
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccch-hhHHHHHHHHHHHHHHHHHHHhHHHH
Q 044623 289 RDMIEGMRMDLRKS-RYKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATT-ESVYNAALALGIANQLTNILRDVGED 365 (486)
Q Consensus 289 ~~mIegm~~DL~~~-~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~-e~~~~~A~~LG~ALQLTNILRDv~ED 365 (486)
..|+.|...|+... .-.|.+++..-+.+-.|.+..+.+.+-.+ ...+.... +...+.+.++|.|+|+.+=+-|+--|
T Consensus 159 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd 238 (311)
T 3llw_A 159 KGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQD 238 (311)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 46888999998754 34588888877777777766655554321 11111223 45678999999999999988888655
Q ss_pred HHcCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 044623 366 AQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELS 423 (486)
Q Consensus 366 l~rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp 423 (486)
-. .+.| +..+ ..|+.+=-+.-.+..--..++.++++|...+..++
T Consensus 239 ~~---------~~GK---~~g~-~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~ 283 (311)
T 3llw_A 239 EE---------ESGK---TTHL-DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDALK 283 (311)
T ss_dssp -------------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTTST
T ss_pred hH---------HHCc---cccc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 31 1111 1112 44555544444555556778888888888887743
No 51
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=81.53 E-value=11 Score=38.27 Aligned_cols=138 Identities=15% Similarity=0.101 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhhccCC---C-CCCHHHHHHHHH-hhhhHHHHHHHh---hhCCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 044623 287 PFRDMIEGMRMDLRKS---R-YKNFDELYLYCY-YVAGTVGLMSVP---VMGIAPDSQATTESVYNAALALGIANQLTNI 358 (486)
Q Consensus 287 ~l~~mIegm~~DL~~~---~-~~T~~DL~~Yc~-~VAGtVG~Lll~---ilg~~~~~~a~~e~~~~~A~~LG~ALQLTNI 358 (486)
...++..|...|+... . -.|.+++..-++ -+|+....+.+. +++....+....+.+.+.+..+|.|+|+.+=
T Consensus 176 ~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DD 255 (368)
T 2q58_A 176 SIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHND 255 (368)
T ss_dssp HHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999998642 2 235566554444 344443333322 2321111111233467899999999999988
Q ss_pred HHhH------HHHHHcCCCCCCHHhHHhcCCChhh---hh--ccCCCHHHHHHHHH------HHHHHHHHHHHHHHhhhh
Q 044623 359 LRDV------GEDAQRGRVYLPQDELAQAGLSDDD---IF--AGEVTNKWRNFMKN------QIKRARMFFDMAENGVTE 421 (486)
Q Consensus 359 LRDv------~EDl~rGRiYLP~d~L~k~Gvs~ed---L~--~g~~~~~~r~li~~------la~rAr~~l~~A~~~l~~ 421 (486)
+-|+ +.|++.|.+-||.=..-+. .++++ |. -++..+..+++... ..+.++..++.+.+.+..
T Consensus 256 iLD~~~gK~~g~Dl~egK~T~p~i~al~~-~~~~~r~~L~~~~~~~~~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~ 334 (368)
T 2q58_A 256 VSDYLFNDSNADDICRFKLTWPLQKSFEI-ADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKD 334 (368)
T ss_dssp HHHHHSCCCSSCTTTSCCCCHHHHSSTTT-CCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhcccCCCCCchHhcCCcHHHHHHHHHh-CCHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 8884 5788889998886422111 12222 11 13333334443322 223456666777766666
Q ss_pred cccc
Q 044623 422 LSEA 425 (486)
Q Consensus 422 Lp~~ 425 (486)
+|..
T Consensus 335 l~~~ 338 (368)
T 2q58_A 335 ITDD 338 (368)
T ss_dssp CSCH
T ss_pred ccch
Confidence 6653
No 52
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=81.53 E-value=12 Score=37.06 Aligned_cols=124 Identities=16% Similarity=0.170 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhccCC-CCCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 044623 288 FRDMIEGMRMDLRKS-RYKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTNILRDVGED 365 (486)
Q Consensus 288 l~~mIegm~~DL~~~-~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTNILRDv~ED 365 (486)
...|+.|...|+... .-.|.+++..-+++=.|.+..+.+.+-.+ ...+....+...+.+.++|.|+|+.+=+-|+-.|
T Consensus 144 ~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd 223 (291)
T 3npk_A 144 LNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTS 223 (291)
T ss_dssp TTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 356888999998653 34688998887777777776666553211 1111122345678899999999999988888655
Q ss_pred H-HcCCCCCCHHhHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 044623 366 A-QRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEA 425 (486)
Q Consensus 366 l-~rGRiYLP~d~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~~~l~~Lp~~ 425 (486)
- ..|+-. |. | .|+.+=-..-.+..--..++.++++|...+..++..
T Consensus 224 ~~~~GK~~---------~~---d--~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~ 270 (291)
T 3npk_A 224 QEQSGKPT---------NN---D--IHKNSFVNLLGLEQAIKTKENLLNECEQDLEKLNEK 270 (291)
T ss_dssp ----------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHCCcc---------ch---h--cCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHhchh
Confidence 3 223321 11 1 344443333344555567788888888888777653
No 53
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=78.11 E-value=39 Score=36.44 Aligned_cols=194 Identities=13% Similarity=0.178 Sum_probs=91.4
Q ss_pred HHhcCCHHH---HHHHHHHHHHHHHhhhhcCCCCCCCCcHHHHHHHHHHHHHHHc---CCCC---CHHHHHHHHHHHhC-
Q 044623 212 GTLLMTSER---RRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFR---GRPF---DMLDAALSDTVTKF- 281 (486)
Q Consensus 212 a~llLP~e~---R~ai~ALYAF~R~lDdIvDd~~~~~i~~~~L~~Wrd~Le~~f~---G~p~---~pv~~aL~~~v~~~- 281 (486)
+.....|+. |..+.=+.+|.-.+||+-|... +...|+.+-+.++..-. +..| .++..+|.+++.+.
T Consensus 297 ~a~~feP~~S~~Rl~~aK~~~litviDD~fD~yg----T~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~ 372 (569)
T 2j5c_A 297 TGVVERRQHGYERIMLTKINALVTTIDDVFDIYG----TLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMA 372 (569)
T ss_dssp HHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHH
Confidence 333444443 4444446667778999988753 23346666666664321 1122 23455665555432
Q ss_pred -------CCC-----hHHHHHHHHHHHhhc---cCCCCCCHHHHHHHHHhhhhHHHHHHHhhhCCCCCCccchhhHH---
Q 044623 282 -------PVD-----IQPFRDMIEGMRMDL---RKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVY--- 343 (486)
Q Consensus 282 -------~Lp-----~~~l~~mIegm~~DL---~~~~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~~~~~a~~e~~~--- 343 (486)
+.. ++.+.++++++...+ .....+|++|+......+.|..-.++...++..+..+ +++.
T Consensus 373 ~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt---~e~~e~l 449 (569)
T 2j5c_A 373 YDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIE---EEAAESM 449 (569)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCC---HHHHHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCC---HHHHHHh
Confidence 111 233556666665443 3345689999998888887755555444444432211 1111
Q ss_pred ----HHHHHHHHHHHHHHHHHhHHHHHHcCCCCCCHH---hHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044623 344 ----NAALALGIANQLTNILRDVGEDAQRGRVYLPQD---ELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAE 416 (486)
Q Consensus 344 ----~~A~~LG~ALQLTNILRDv~EDl~rGRiYLP~d---~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A~ 416 (486)
......+...-+.|=|........+|- ++.- .|.++|++.++ ..+-+..+++.+.+.+.+..
T Consensus 450 ~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~--v~s~V~cyMke~g~s~ee---------A~~~i~~~ie~~wk~ln~e~ 518 (569)
T 2j5c_A 450 HKYHDIVRASCTILRLADDMGTSLDEVERGD--VPKSVQCYMNEKNASEEE---------AREHVRSLIDQTWKMMNKEM 518 (569)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHC------------CCHHHHC------CCHH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhcccchhhhhcccCC--ccHHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 223333333334444444444444444 3322 35666766543 55567777777777666643
Q ss_pred Hhhhhccc
Q 044623 417 NGVTELSE 424 (486)
Q Consensus 417 ~~l~~Lp~ 424 (486)
-. ..+|.
T Consensus 519 l~-~~vp~ 525 (569)
T 2j5c_A 519 MT-SSFSK 525 (569)
T ss_dssp HH-CCSCH
T ss_pred hc-cCCCH
Confidence 22 34444
No 54
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=76.54 E-value=88 Score=33.69 Aligned_cols=188 Identities=12% Similarity=0.139 Sum_probs=101.2
Q ss_pred HHHHhcCCHHH---HHHHHHHHHHHHHhhhhcCCCCCCCCcHHHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHh
Q 044623 210 YLGTLLMTSER---RRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLF----RGRPFD--MLDAALSDTVTK 280 (486)
Q Consensus 210 yla~llLP~e~---R~ai~ALYAF~R~lDdIvDd~~~~~i~~~~L~~Wrd~Le~~f----~G~p~~--pv~~aL~~~v~~ 280 (486)
+.+..+..|+. |..+.=+-++.-.+||+=|... +.+.|+-+-+++++.- ..-|.. .+..+|.+++.+
T Consensus 277 w~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yg----t~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e 352 (555)
T 3n0f_A 277 WAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYG----TLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINE 352 (555)
T ss_dssp HHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccC----CHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHH
Confidence 33444455443 6666667777788899988643 3344666666666532 111221 244555554432
Q ss_pred --------CCCC-----hHHHHHHHHHHHhhc---cCCCCCCHHHHHHHHHhhhhHHHHHHHhhhCCCCCCccchhhHH-
Q 044623 281 --------FPVD-----IQPFRDMIEGMRMDL---RKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVY- 343 (486)
Q Consensus 281 --------~~Lp-----~~~l~~mIegm~~DL---~~~~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~~~~~a~~e~~~- 343 (486)
.+.. ++.+.+++.|+...+ .....+|++|+......+.|..-.++...++..+.- ++++.
T Consensus 353 ~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~l---t~e~~e 429 (555)
T 3n0f_A 353 IAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNI---KKEEIE 429 (555)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSC---CHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCC---CHHHHH
Confidence 2211 123456777765544 334568999999998887776444433344322211 11111
Q ss_pred ------HHHHHHHHHHHHHHHHHhHHHHHHcCCCCCCHH---hHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHH
Q 044623 344 ------NAALALGIANQLTNILRDVGEDAQRGRVYLPQD---ELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDM 414 (486)
Q Consensus 344 ------~~A~~LG~ALQLTNILRDv~EDl~rGRiYLP~d---~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~ 414 (486)
......+...-|.|=|........+|- ++.- .|.++|++.++ +.+-+..+++.+.+-+.+
T Consensus 430 ~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~--vas~V~cYMke~GvSeEe---------A~~~i~~~Ie~~wK~lN~ 498 (555)
T 3n0f_A 430 NLQKYHDIISRPSHIFRLCNDLASASAEIARGE--TANSVSCYMRTKGISEEL---------ATESVMNLIDETWKKMNK 498 (555)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHhccchhhhhhhhcCC--cchHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHH
Confidence 223334444444444444444445554 4433 46778888755 556677888888776665
Q ss_pred H
Q 044623 415 A 415 (486)
Q Consensus 415 A 415 (486)
.
T Consensus 499 e 499 (555)
T 3n0f_A 499 E 499 (555)
T ss_dssp H
T ss_pred H
Confidence 4
No 55
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=76.13 E-value=5.8 Score=38.88 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=47.0
Q ss_pred HHHHHHHHhhccCCC-CCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHHH
Q 044623 289 RDMIEGMRMDLRKSR-YKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLTN 357 (486)
Q Consensus 289 ~~mIegm~~DL~~~~-~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLTN 357 (486)
..|+.|...|+.... ..|++++..-+..=.|.+..+.+.+-.+ ...+....+...+.+.++|.|+|+.+
T Consensus 149 ~~~~~GQ~lDl~~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~D 219 (274)
T 3kra_B 149 EGMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMME 219 (274)
T ss_dssp TTHHHHHHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999997653 5788888877777777777666554321 11122223456688999999999954
No 56
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=72.18 E-value=1.1e+02 Score=32.88 Aligned_cols=187 Identities=13% Similarity=0.128 Sum_probs=99.8
Q ss_pred HHHHhcCCHHH---HHHHHHHHHHHHHhhhhcCCCCCCCCcHHHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHh
Q 044623 210 YLGTLLMTSER---RRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLF----RGRPFD--MLDAALSDTVTK 280 (486)
Q Consensus 210 yla~llLP~e~---R~ai~ALYAF~R~lDdIvDd~~~~~i~~~~L~~Wrd~Le~~f----~G~p~~--pv~~aL~~~v~~ 280 (486)
+.+..+..|+. |..+.=+-++.-.+||+=|... +.+-|+-+-+++++.- ..-|.. .+..+|.+++.+
T Consensus 279 w~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yg----TleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e 354 (554)
T 3g4d_A 279 WISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYA----TYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEE 354 (554)
T ss_dssp HHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSC----CHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHH
T ss_pred HHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccC----CHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHH
Confidence 33334444443 6666666677788899988643 3445666666666632 122322 344556555432
Q ss_pred C--------CCC-----hHHHHHHHHHHHhhcc---CCCCCCHHHHHHHHHhhhhHHHHHHHhhhCCCCCCccchhhHHH
Q 044623 281 F--------PVD-----IQPFRDMIEGMRMDLR---KSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYN 344 (486)
Q Consensus 281 ~--------~Lp-----~~~l~~mIegm~~DL~---~~~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~~~~~a~~e~~~~ 344 (486)
. +.. ++.+.++++|+...+. ....+|++|+.....-+.|..-.++...+|..+.- ++++.+
T Consensus 355 ~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~l---t~e~~e 431 (554)
T 3g4d_A 355 MVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIV---TPETFK 431 (554)
T ss_dssp HHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTS---CHHHHH
T ss_pred HHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCC---CHHHHH
Confidence 2 111 2235667777765543 34568999999998888887655555556654321 122222
Q ss_pred H-------HHHHHHHHHHHHHHHhHHHHH-HcCCCCCCHH---hHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHH
Q 044623 345 A-------ALALGIANQLTNILRDVGEDA-QRGRVYLPQD---ELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFD 413 (486)
Q Consensus 345 ~-------A~~LG~ALQLTNILRDv~EDl-~rGRiYLP~d---~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~ 413 (486)
. ....+... .++-|+.-.- ...|--++.- .|.++|++.++ +.+-+..+++.+.+-+.
T Consensus 432 ~~~~~p~i~~~~~~I~---RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEe---------A~~~i~~~Ie~~wK~lN 499 (554)
T 3g4d_A 432 WAASDPKIIQASTIIC---RFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQE---------AYDVFNKHVESAWKDLN 499 (554)
T ss_dssp HHHTCCHHHHHHHHHH---HHHHHHHHHCC------CCCHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHH---HHhcccchhhhhhccCCccHHHHHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHH
Confidence 2 22222222 3333444322 1233334443 46678888654 55667788888777666
Q ss_pred HH
Q 044623 414 MA 415 (486)
Q Consensus 414 ~A 415 (486)
+.
T Consensus 500 ~e 501 (554)
T 3g4d_A 500 QE 501 (554)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 57
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=60.11 E-value=1.9e+02 Score=31.10 Aligned_cols=191 Identities=11% Similarity=0.086 Sum_probs=105.1
Q ss_pred HHHHhcCCHHH---HHHHHHHHHHHHHhhhhcCCCCCCCCcHHHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHh
Q 044623 210 YLGTLLMTSER---RRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLF----RGRPFD--MLDAALSDTVTK 280 (486)
Q Consensus 210 yla~llLP~e~---R~ai~ALYAF~R~lDdIvDd~~~~~i~~~~L~~Wrd~Le~~f----~G~p~~--pv~~aL~~~v~~ 280 (486)
+.+..+..|+. |..+.=+-++.-.+||+=|... +.+-|+-+-+++++.- ..-|.. .+..+|.+++.+
T Consensus 275 w~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yg----TleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E 350 (550)
T 3m00_A 275 WTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYG----TVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKD 350 (550)
T ss_dssp HHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccC----CHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHH
Confidence 34444554443 6666667777788899988643 3445666666666632 111222 344555554432
Q ss_pred C--------CC-C----hHHHHHHHHHHHhhcc---CCCCCCHHHHHHHHHhhhhHHHHHHHhhhCCCCCCccchhh---
Q 044623 281 F--------PV-D----IQPFRDMIEGMRMDLR---KSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTES--- 341 (486)
Q Consensus 281 ~--------~L-p----~~~l~~mIegm~~DL~---~~~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~~~~~a~~e~--- 341 (486)
. +. . ++.+.+++.|+-..+. ....+|++|+..-...+.|..-......+|...-.....+.
T Consensus 351 ~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~~~lt~e~~e~~~~ 430 (550)
T 3m00_A 351 YEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGMKSATEQDFEWLSK 430 (550)
T ss_dssp HHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTCTTCCHHHHHHHHT
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcCCCCcHHHHHhhcc
Confidence 1 11 1 2335667777765543 23468999999998888887655555566652111100000
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHcCCCCCCHH---hHHhcCCChhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 044623 342 VYNAALALGIANQLTNILRDVGEDAQRGRVYLPQD---ELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMA 415 (486)
Q Consensus 342 ~~~~A~~LG~ALQLTNILRDv~EDl~rGRiYLP~d---~L~k~Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~A 415 (486)
........+...-|.|=|........+|-+ +.- .|.++|++.|+ +.+-+..+++.+.+-+.+.
T Consensus 431 ~p~i~~~~~~I~RL~NDI~S~k~E~~rG~v--as~V~cYMke~GvSeEe---------A~~~i~~~Ie~~wK~lN~e 496 (550)
T 3m00_A 431 NPKILEASVIICRVIDDTATYEVEKSRGQI--ATGIECCMRDYGISTKE---------AMAKFQNMAETAWKDINEG 496 (550)
T ss_dssp CCHHHHHHHHHHHHHHHHHSHHHHHHTTCT--TSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhhheeeccchhHHHHHhcCCc--ccHHHHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 012233344444444544444455566754 333 57778888765 5566777888887766654
No 58
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=59.04 E-value=1.6e+02 Score=29.93 Aligned_cols=160 Identities=11% Similarity=0.052 Sum_probs=90.8
Q ss_pred cCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHh--CCCChHHHHHH
Q 044623 215 LMTSERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGRP-FDMLDAALSDTVTK--FPVDIQPFRDM 291 (486)
Q Consensus 215 lLP~e~R~ai~ALYAF~R~lDdIvDd~~~~~i~~~~L~~Wrd~Le~~f~G~p-~~pv~~aL~~~v~~--~~Lp~~~l~~m 291 (486)
..+.+....+..+..|.=.+||+.|++. ..+..+.+.+- .|.+ .+|+..+|.++..+ -..++.....+
T Consensus 80 ~a~~e~l~liad~~~~~F~lDD~~d~~~------~~l~~~~~~ll---~G~~~~~Pl~~al~dl~~rl~~~~~p~~~~rf 150 (374)
T 1yyq_A 80 KVSKECMADLSIHYTYTLVLDDSKDDPY------PTMVNYFDDLQ---AGREQAHPWWALVNEHFPNVLRHFGPFCSLNL 150 (374)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCSCSH------HHHTTHHHHHH---HTCCCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcccccCcH------HHHHHHHHHHh---cCCCCCChHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4478888888888899999999998753 23444444433 3654 47998988888764 23444444444
Q ss_pred HHHHHhhc-------c-CCCCCCHHHHHHHHHhhhhHHHHHHHh-hhCCCC-CCccchhhHHHHHHHHHHHHHHHHHHHh
Q 044623 292 IEGMRMDL-------R-KSRYKNFDELYLYCYYVAGTVGLMSVP-VMGIAP-DSQATTESVYNAALALGIANQLTNILRD 361 (486)
Q Consensus 292 Iegm~~DL-------~-~~~~~T~~DL~~Yc~~VAGtVG~Lll~-ilg~~~-~~~a~~e~~~~~A~~LG~ALQLTNILRD 361 (486)
+.++..++ . ...+++.+++-.|-+...|. ++.... ++.... +.....+....+...|.. .+++.-|
T Consensus 151 ~~s~~~~~~a~~~Ea~n~~~~p~~~~Y~~~rR~~sG~-~E~~~~~~~P~~~~~e~~~~~~~~~~i~am~~---~i~~~ND 226 (374)
T 1yyq_A 151 IRSTLDFFEGCWIEQYNFGGFPGSHDYPQFLRRMNGL-GHCVGASLWPKEQFNERSLFLEITSAIAQMEN---WMVWVND 226 (374)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCTTCTTHHHHHHHHHHC-HHHHHHTTCCTTTCCTTTTHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhccH-HHHHHHhhccccccchhhcchhHHHHHHHHHH---HHHhhhh
Confidence 44443332 2 23455778887888887775 443333 332211 011111223344444544 4455555
Q ss_pred HHHH---HH--cCCCCCCHHhHHhcCCChhh
Q 044623 362 VGED---AQ--RGRVYLPQDELAQAGLSDDD 387 (486)
Q Consensus 362 v~ED---l~--rGRiYLP~d~L~k~Gvs~ed 387 (486)
|--- .. ..+.-+...+...+|++.++
T Consensus 227 IlSf~KE~~~~Gd~~NlV~vl~~~~g~S~~e 257 (374)
T 1yyq_A 227 LMSFYKEFDDERDQISLVKNYVVSDEISLHE 257 (374)
T ss_dssp HHHHHHHTTCSSCCCCHHHHHHHHHTCCHHH
T ss_pred hhccchhhhccCCccchhhhehhcCCCCHHH
Confidence 5433 32 23456677778888888543
No 59
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=59.04 E-value=16 Score=35.67 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=40.1
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHhhhhHHHHHHHhhhCC-CCCCccchhhHHHHHHHHHHHHHHH
Q 044623 289 RDMIEGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQATTESVYNAALALGIANQLT 356 (486)
Q Consensus 289 ~~mIegm~~DL~~~~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~-~~~~~a~~e~~~~~A~~LG~ALQLT 356 (486)
..|+.|...|+....-.+.+.++.-+++-.|.+..+.+.+-.+ ...+....+...+.+.++|.|+|+.
T Consensus 151 ~~~~~GQ~lDl~~~~~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~ 219 (273)
T 3qkc_B 151 EGIVEGQYHELGLNQLNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLL 219 (273)
T ss_dssp TTHHHHHHHHTTCCSSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999976433355444433355555555555544211 1111122344667899999999984
No 60
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=42.15 E-value=4.2e+02 Score=29.82 Aligned_cols=107 Identities=12% Similarity=0.026 Sum_probs=59.3
Q ss_pred HHhcCCHHH---HHHHHHHHHHHHHhhhhcCCCCCCCCcHHHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHhC-
Q 044623 212 GTLLMTSER---RRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLF----RGRPFD--MLDAALSDTVTKF- 281 (486)
Q Consensus 212 a~llLP~e~---R~ai~ALYAF~R~lDdIvDd~~~~~i~~~~L~~Wrd~Le~~f----~G~p~~--pv~~aL~~~v~~~- 281 (486)
+..+..|+. |..+.=+-++.-.+||+=|... +.+.|+-+-+.+++.- .+-|.. .+..+|.+++.+.
T Consensus 540 ~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yg----T~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~ 615 (817)
T 3sdr_A 540 AAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYG----TLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVA 615 (817)
T ss_dssp HTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCccchHHHHHHHHHHHHHHHHHHHcccCC----CHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHH
Confidence 334455444 5656666667788899888633 3445666666666531 112221 2445555544322
Q ss_pred -------CCC-----hHHHHHHHHHHHhhc---cCCCCCCHHHHHHHHHhhhhHHH
Q 044623 282 -------PVD-----IQPFRDMIEGMRMDL---RKSRYKNFDELYLYCYYVAGTVG 322 (486)
Q Consensus 282 -------~Lp-----~~~l~~mIegm~~DL---~~~~~~T~~DL~~Yc~~VAGtVG 322 (486)
+.. ++.+.+++.++.... .....+|++|+..-...+.|..-
T Consensus 616 ~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ 671 (817)
T 3sdr_A 616 WEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRI 671 (817)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccH
Confidence 211 123456777776554 23456899998888777766543
No 61
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=31.24 E-value=6e+02 Score=28.41 Aligned_cols=188 Identities=12% Similarity=0.094 Sum_probs=98.7
Q ss_pred HHHhcCCHHH---HHHHHHHHHHHHHhhhhcCCCCCCCCcHHHHHHHHHHHHHHHcC----CCCC--HHHHHHHHHHHh-
Q 044623 211 LGTLLMTSER---RRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRG----RPFD--MLDAALSDTVTK- 280 (486)
Q Consensus 211 la~llLP~e~---R~ai~ALYAF~R~lDdIvDd~~~~~i~~~~L~~Wrd~Le~~f~G----~p~~--pv~~aL~~~v~~- 280 (486)
.+..+..|+. |..+.=+-++.-.+||+=|... +.+.|+-+-+.+++.-.. -|.. .+..+|.+++.+
T Consensus 511 ~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yg----T~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~nei 586 (785)
T 3s9v_A 511 PASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHG----SLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDI 586 (785)
T ss_dssp HHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCC----CHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHHHH
Confidence 3334444443 5555566677778899888533 344566666666653211 1211 244555444432
Q ss_pred -------CCCC-----hHHHHHHHHHHHhhc---cCCCCCCHHHHHHHHHhhhhHHHHHHHhhhCCCCCCccchhhH---
Q 044623 281 -------FPVD-----IQPFRDMIEGMRMDL---RKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESV--- 342 (486)
Q Consensus 281 -------~~Lp-----~~~l~~mIegm~~DL---~~~~~~T~~DL~~Yc~~VAGtVG~Lll~ilg~~~~~~a~~e~~--- 342 (486)
.+.. ++.+.+++.++.... .....+|++|+..-...+.|..-.++..+++..+.- ++++
T Consensus 587 ~~~~~~~~g~~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~l---t~e~~e~ 663 (785)
T 3s9v_A 587 AKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVL---TDEVLSK 663 (785)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCC---CHHHHTT
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCC---CHHHHhc
Confidence 1211 123456777776554 234568999998888777775444444444432211 0111
Q ss_pred ----HHHHHHHHHHHHHHHHHHhHHHHHHcCCCC-CCHHhHHhc-CCChhhhhccCCCHHHHHHHHHHHHHHHHHHHH
Q 044623 343 ----YNAALALGIANQLTNILRDVGEDAQRGRVY-LPQDELAQA-GLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDM 414 (486)
Q Consensus 343 ----~~~A~~LG~ALQLTNILRDv~EDl~rGRiY-LP~d~L~k~-Gvs~edL~~g~~~~~~r~li~~la~rAr~~l~~ 414 (486)
.......+.-+-+.|=|........+|-+- .=.=.|.++ |++.++ ..+-+..+++.+.+-+.+
T Consensus 664 ~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEe---------A~~~i~~~Ie~~wKeln~ 732 (785)
T 3s9v_A 664 IDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEE---------ALQHVYSVMENALEELNR 732 (785)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHH---------HHHHHHHHHHHHHHHHHH
Confidence 122333333344444444444455566431 112257778 788765 445567777777665554
No 62
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=21.55 E-value=41 Score=24.40 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=19.2
Q ss_pred HcCCCCCCHHhHHhcCCChhhh
Q 044623 367 QRGRVYLPQDELAQAGLSDDDI 388 (486)
Q Consensus 367 ~rGRiYLP~d~L~k~Gvs~edL 388 (486)
..|++.||.++..+.|+.+.|-
T Consensus 10 ~kgqi~IPk~ir~~lgi~~Gd~ 31 (53)
T 2l66_A 10 RNYQVTIPAKVRQKFQIKEGDL 31 (53)
T ss_dssp SSSCBCCCHHHHHHSCCCTTCE
T ss_pred CCCEEEeCHHHHHHcCcCCCCE
Confidence 4799999999999999998663
Done!