BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044624
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 101/229 (44%), Gaps = 49/229 (21%)
Query: 166 LDFPEASTIHPVLRFTGSKAGAGKEHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQ 225
LD P + P++ +A +E C WLD +P SVLYVSFGS T+ Q
Sbjct: 231 LDKPPVYPVGPLVNIGKQEAKQTEESE-----CLKWLDNQPLGSVLYVSFGSGGTLTCEQ 285
Query: 226 MVQLAMALEASGKNFIWIVRPPIG------FDINSE-----------------------F 256
+ +LA+ L S + F+W++R P G FD +S+ F
Sbjct: 286 LNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPF 345
Query: 257 RANDAD--------------GTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAE 302
A A G S LE++ G+P+ WPL AEQ N+ LL E++
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALR 405
Query: 303 VARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNAFRND 351
G + V +E + ++ +M E E+GK +R K E+KE ++D
Sbjct: 406 PRAGDDGLVRREEVARVVKGLM-EGEEGKGVRNKMKELKEAACRVLKDD 453
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 12/130 (9%)
Query: 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFL--ETPFN 58
++P GH+IP + A L T+ FV I P S + P +
Sbjct: 11 IIPSPGMGHLIPLVEFAKRLVHLHGLTVTFV--------IAGEGPPSKAQRTVLDSLPSS 62
Query: 59 IIDHDLPPCTENTDSHPFDVVRKLLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFF 118
I LPP S + ++ P +K+ + + G P ++ D+F
Sbjct: 63 ISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFV--EGGRLPTALVVDLFG 120
Query: 119 GWCKEIAQEY 128
++A E+
Sbjct: 121 TDAFDVAVEF 130
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 41/188 (21%)
Query: 198 CKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPP--IGFDI--N 253
C +WL+ K SV+YV+FGS + Q+++ A L K+F+WI+RP IG + +
Sbjct: 285 CLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFS 344
Query: 254 SEFRANDAD--------------------------GTQSALEALSHGVPINGWPLAAEQF 287
SEF AD G S E++ GVP+ WP A+Q
Sbjct: 345 SEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQP 404
Query: 288 YNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNA 347
+ + E E+ ++ V +E + I V+ +KGK M+ K +E+K+
Sbjct: 405 TDCRFICNE----WEIGMEIDTNVKREELAKLINEVI-AGDKGKKMKQKAMELKK----- 454
Query: 348 FRNDENLR 355
+ +EN R
Sbjct: 455 -KAEENTR 461
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 2/128 (1%)
Query: 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNII 60
M+P+ QGH+ P LA L + + I FVNT N K++ S + F + F I
Sbjct: 13 MIPYPVQGHINPLFKLAKLLH-LRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESI 71
Query: 61 DHDLPPCTENTDSHPFDVVRKLLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGW 120
L P + D DV +F + +L+ L N C+++D +
Sbjct: 72 PDGLTPMEGDGDVSQ-DVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSF 130
Query: 121 CKEIAQEY 128
+ A+E+
Sbjct: 131 TIQAAEEF 138
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 86/191 (45%), Gaps = 40/191 (20%)
Query: 190 EHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRP--- 246
EHG C WLD+ SV+Y+SFGS T ++ LA +LE G FIW R
Sbjct: 260 EHG-----CLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPK 314
Query: 247 ---PIGFDINSEFRAN--------------------DADGTQSALEALSHGVPINGWPLA 283
P GF ++ + G S LE + GVP+ P
Sbjct: 315 EKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFF 374
Query: 284 AEQFYNSNLLGEEVGVCAEVARGMNCAVL-KEHIVVKIELVMNETEKGKPMRMKDLEVKE 342
+Q N+ +L E V E+ G++ VL KE I +EL M+ +EKG MR K +++KE
Sbjct: 375 GDQGLNT-ILTESV---LEIGVGVDNGVLTKESIKKALELTMS-SEKGGIMRQKIVKLKE 429
Query: 343 IIDNAFRNDEN 353
+AF+ E
Sbjct: 430 ---SAFKAVEQ 437
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 79/177 (44%), Gaps = 40/177 (22%)
Query: 196 ELCKNWLDRKPCRSVLYVSFGSQD-TIAVSQMVQLAMALEASGKNFIWI------VRPP- 247
+L WLD +P +SV+++ FGS + SQ+ ++A+ L+ SG F+W V P
Sbjct: 264 DLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEG 323
Query: 248 -------------IGFDINSEFRANDADGT-------QSALEALSHGVPINGWPLAAEQF 287
G+ E A+ A G S LE++ GVPI WP+ AEQ
Sbjct: 324 FLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQ 383
Query: 288 YNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEII 344
N+ L +E G V G+ K VV E E EKG +KDL K+ I
Sbjct: 384 LNAFRLVKEWG----VGLGLRVDYRKGSDVVAAE----EIEKG----LKDLMDKDSI 428
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 79/177 (44%), Gaps = 40/177 (22%)
Query: 196 ELCKNWLDRKPCRSVLYVSFGSQD-TIAVSQMVQLAMALEASGKNFIWI------VRPP- 247
+L WLD +P +SV+++ FGS + SQ+ ++A+ L+ SG F+W V P
Sbjct: 264 DLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEG 323
Query: 248 -------------IGFDINSEFRANDADGT-------QSALEALSHGVPINGWPLAAEQF 287
G+ E A+ A G S LE++ GVPI WP+ AEQ
Sbjct: 324 FLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQ 383
Query: 288 YNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEII 344
N+ L +E G V G+ K VV E E EKG +KDL K+ I
Sbjct: 384 LNAFRLVKEWG----VGLGLRVDYRKGSDVVAAE----EIEKG----LKDLMDKDSI 428
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 30/176 (17%)
Query: 198 CKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRP------PIGF- 250
C WL + SV+Y+SFG+ T +++V L+ ALEAS FIW +R P GF
Sbjct: 261 CLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFL 320
Query: 251 ------------DINSEFRANDADGT-------QSALEALSHGVPINGWPLAAEQFYNSN 291
+E A++A G S E+++ GVP+ P +Q N
Sbjct: 321 EKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGR 380
Query: 292 LLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNA 347
++ + + + + G+ K ++ + ++++ EKGK +R ++E D A
Sbjct: 381 MVEDVLEIGVRIEGGV---FTKSGLMSCFDQILSQ-EKGKKLRENLRALRETADRA 432
>pdb|1LHY|A Chain A, Crystal Structure Of Tem-30 Beta-lactamase At 2.0 Angstrom
Length = 263
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 165 LLDFPEASTI-HPVLR-------FTGSKAGAGKEHGISAELCKNWLDRKPCRSVLYVSFG 216
L+D+ EA + P+LR F K+GAG E G S + D KP R V+ + G
Sbjct: 182 LIDWMEADKVAGPLLRSALPAGWFIADKSGAG-ERGSSGIIAALGPDGKPSRIVVIYTTG 240
Query: 217 SQDTI 221
SQ T+
Sbjct: 241 SQATM 245
>pdb|3TOI|A Chain A, Tailoring Enzyme Stability And Exploiting Stability-Trait
Linkage By Iterative Truncation And Optimization
pdb|3TOI|B Chain B, Tailoring Enzyme Stability And Exploiting Stability-Trait
Linkage By Iterative Truncation And Optimization
Length = 254
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 165 LLDFPEASTI-HPVLR-------FTGSKAGAGKEHGISAELCKNWLDRKPCRSVLYVSFG 216
L+D+ EA + P+LR F K+GAG EHG + D KP R V+ G
Sbjct: 169 LMDWMEADKVAGPLLRSVLPAGWFIADKSGAG-EHGSRGIIAALGPDGKPSRIVVIYMTG 227
Query: 217 SQDTI 221
SQ T+
Sbjct: 228 SQATM 232
>pdb|1JI5|A Chain A, Dlp-1 From Bacillus Anthracis
pdb|1JI5|B Chain B, Dlp-1 From Bacillus Anthracis
pdb|1JI5|C Chain C, Dlp-1 From Bacillus Anthracis
pdb|1JI5|D Chain D, Dlp-1 From Bacillus Anthracis
Length = 142
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 239 NFIWIVRPPIGFDINSEFRANDADGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVG 298
NF W V+ P F ++ +F + E + I G P+A + Y E+
Sbjct: 22 NFHWYVKGPQFFTLHEKFEELYTESATHIDEIAERILAIGGKPVATMKEYL------EIS 75
Query: 299 VCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNAFRNDENLRDLL 358
E A G + E I+ E+++ E +KG EI N+ +DE DLL
Sbjct: 76 SIQEAAYGETAEGMVEAIMKDYEMMLVELKKG----------MEIAQNS--DDEMTSDLL 123
>pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|J Chain J, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|K Chain K, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|L Chain L, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1QMG|A Chain A, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|B Chain B, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|C Chain C, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|D Chain D, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose
Length = 524
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 264 TQSALEALSHGVPINGWPLAAEQFYNSNLLG----EEVGVCAEVARGMNCAVLKEHIVVK 319
+Q AL A+ +G PIN Q SN L E +GVCA++ ++ +V + V+
Sbjct: 466 SQQALVAVDNGAPIN-------QDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVR 518
Query: 320 IEL 322
EL
Sbjct: 519 PEL 521
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,418,916
Number of Sequences: 62578
Number of extensions: 399315
Number of successful extensions: 980
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 18
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)