Query 044624
Match_columns 358
No_of_seqs 158 out of 1300
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:08:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 1.3E-56 2.7E-61 425.4 32.2 349 1-357 13-477 (491)
2 PLN02863 UDP-glucoronosyl/UDP- 100.0 7.4E-56 1.6E-60 420.8 32.7 345 1-357 14-462 (477)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 8.5E-56 1.8E-60 417.6 30.1 335 1-357 12-441 (451)
4 PLN02210 UDP-glucosyl transfer 100.0 3E-55 6.5E-60 415.4 31.1 335 1-357 13-446 (456)
5 PLN02555 limonoid glucosyltran 100.0 3.7E-55 7.9E-60 414.9 30.6 341 1-357 12-460 (480)
6 PLN02173 UDP-glucosyl transfer 100.0 5.6E-55 1.2E-59 410.4 31.2 337 1-357 10-439 (449)
7 PLN03007 UDP-glucosyltransfera 100.0 9.3E-55 2E-59 416.5 32.5 347 1-357 10-471 (482)
8 PLN02992 coniferyl-alcohol glu 100.0 9.3E-55 2E-59 411.1 31.1 339 1-357 10-460 (481)
9 PLN02764 glycosyltransferase f 100.0 4.2E-54 9.1E-59 403.3 31.7 340 1-357 10-436 (453)
10 PLN02152 indole-3-acetate beta 100.0 4.1E-54 8.8E-59 405.2 30.8 343 1-357 8-447 (455)
11 PLN02208 glycosyltransferase f 100.0 4.2E-54 9.1E-59 405.2 30.9 342 1-357 9-430 (442)
12 PLN00414 glycosyltransferase f 100.0 1.1E-53 2.4E-58 402.8 32.2 333 1-344 9-421 (446)
13 PLN02670 transferase, transfer 100.0 3.1E-53 6.7E-58 400.4 33.0 337 1-349 11-451 (472)
14 PLN03004 UDP-glycosyltransfera 100.0 3.7E-53 8.1E-58 398.3 32.3 340 1-356 8-451 (451)
15 PLN03015 UDP-glucosyl transfer 100.0 2.2E-53 4.9E-58 399.5 30.4 341 1-357 8-459 (470)
16 PLN02448 UDP-glycosyltransfera 100.0 2.7E-53 5.8E-58 404.4 30.6 339 1-357 15-448 (459)
17 PLN00164 glucosyltransferase; 100.0 5.7E-53 1.2E-57 402.3 29.7 337 1-357 8-464 (480)
18 PLN02207 UDP-glycosyltransfera 100.0 1.8E-52 3.8E-57 394.9 32.1 343 1-357 8-456 (468)
19 PLN02562 UDP-glycosyltransfera 100.0 2.1E-52 4.6E-57 395.6 30.6 331 1-357 11-440 (448)
20 PLN02554 UDP-glycosyltransfera 100.0 1.7E-52 3.6E-57 400.5 29.3 337 1-357 7-469 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 1.2E-50 2.6E-55 387.1 30.5 345 1-357 8-463 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.3E-37 2.8E-42 298.8 25.5 326 2-347 27-449 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.1E-40 2.3E-45 324.2 0.6 149 191-347 259-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.3E-35 2.7E-40 280.0 25.1 317 2-347 1-376 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 5.7E-35 1.2E-39 276.5 24.8 323 1-346 5-387 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 8.7E-34 1.9E-38 275.6 20.2 328 1-345 10-437 (496)
27 COG1819 Glycosyl transferases, 100.0 4.6E-31 1E-35 247.1 18.5 320 1-349 6-387 (406)
28 PRK12446 undecaprenyldiphospho 99.8 2E-17 4.3E-22 153.1 21.4 293 5-341 10-337 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.8 1.1E-16 2.5E-21 146.7 20.3 274 5-323 10-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.7 1.7E-16 3.7E-21 145.6 18.6 274 4-327 8-315 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.6 1.6E-14 3.5E-19 132.5 17.7 295 4-340 8-338 (357)
32 PRK00726 murG undecaprenyldiph 99.4 2.7E-11 5.9E-16 112.9 22.3 70 262-339 260-333 (357)
33 cd03785 GT1_MurG MurG is an N- 99.4 1E-10 2.3E-15 108.6 22.4 283 5-327 8-325 (350)
34 TIGR01133 murG undecaprenyldip 99.3 5.1E-10 1.1E-14 103.8 22.2 62 262-327 258-322 (348)
35 PF03033 Glyco_transf_28: Glyc 99.3 5.7E-12 1.2E-16 101.0 6.9 123 1-140 3-132 (139)
36 TIGR03590 PseG pseudaminic aci 99.2 2.8E-09 6E-14 95.7 19.0 231 6-293 13-279 (279)
37 TIGR00215 lpxB lipid-A-disacch 99.2 8.8E-10 1.9E-14 103.6 16.1 61 262-327 275-348 (385)
38 PRK00025 lpxB lipid-A-disaccha 98.9 9.5E-08 2.1E-12 89.9 15.9 104 5-136 10-116 (380)
39 PRK13609 diacylglycerol glucos 98.8 2E-07 4.4E-12 87.6 16.2 111 207-327 201-339 (380)
40 COG4671 Predicted glycosyl tra 98.6 2.8E-06 6E-11 75.8 15.2 82 262-347 302-392 (400)
41 PRK13608 diacylglycerol glucos 98.6 2.2E-06 4.8E-11 80.9 15.1 124 207-340 201-352 (391)
42 PF04101 Glyco_tran_28_C: Glyc 98.5 1.7E-08 3.6E-13 83.6 0.4 62 262-327 80-145 (167)
43 cd03814 GT1_like_2 This family 98.5 4.5E-05 9.8E-10 70.4 23.6 56 262-327 278-333 (364)
44 COG1519 KdtA 3-deoxy-D-manno-o 98.5 8.8E-05 1.9E-09 68.3 22.3 289 5-348 57-408 (419)
45 cd03818 GT1_ExpC_like This fam 98.4 3.8E-05 8.2E-10 72.7 19.8 66 265-340 315-380 (396)
46 cd03823 GT1_ExpE7_like This fa 98.4 4.7E-05 1E-09 70.1 20.1 68 262-339 275-342 (359)
47 PLN02605 monogalactosyldiacylg 98.4 2.1E-05 4.6E-10 74.0 17.4 70 262-339 290-361 (382)
48 PRK05749 3-deoxy-D-manno-octul 98.4 4.5E-05 9.8E-10 72.9 19.1 73 262-342 332-404 (425)
49 cd03800 GT1_Sucrose_synthase T 98.3 0.00038 8.2E-09 65.4 23.9 66 264-339 316-381 (398)
50 cd03794 GT1_wbuB_like This fam 98.3 0.00022 4.8E-09 66.1 21.8 64 266-339 315-378 (394)
51 PLN02871 UDP-sulfoquinovose:DA 98.3 0.00024 5.2E-09 68.7 22.4 68 262-339 343-413 (465)
52 cd03819 GT1_WavL_like This fam 98.3 0.00047 1E-08 63.7 23.3 70 262-341 276-346 (355)
53 COG3980 spsG Spore coat polysa 98.2 5.9E-05 1.3E-09 65.4 13.8 257 5-338 13-301 (318)
54 cd04962 GT1_like_5 This family 98.2 0.00045 9.9E-09 64.3 21.2 69 262-340 282-350 (371)
55 cd03817 GT1_UGDG_like This fam 98.2 0.00023 5.1E-09 65.6 18.9 72 262-344 290-361 (374)
56 cd03820 GT1_amsD_like This fam 98.1 0.00013 2.8E-09 66.5 16.1 56 262-327 264-320 (348)
57 cd03808 GT1_cap1E_like This fa 98.1 0.00098 2.1E-08 60.9 20.7 56 262-327 275-330 (359)
58 TIGR03492 conserved hypothetic 98.0 0.00035 7.5E-09 66.0 17.3 66 262-338 304-372 (396)
59 cd03816 GT1_ALG1_like This fam 98.0 0.0025 5.4E-08 60.7 22.8 65 265-341 332-399 (415)
60 TIGR03449 mycothiol_MshA UDP-N 97.9 0.0019 4.1E-08 61.1 20.4 69 262-340 314-382 (405)
61 cd03795 GT1_like_4 This family 97.9 0.003 6.5E-08 58.2 20.6 68 264-340 279-346 (357)
62 cd03825 GT1_wcfI_like This fam 97.9 0.0021 4.5E-08 59.5 19.5 56 262-327 276-331 (365)
63 PRK10307 putative glycosyl tra 97.8 0.018 3.9E-07 54.7 24.4 66 266-341 323-388 (412)
64 cd03798 GT1_wlbH_like This fam 97.7 0.014 3.1E-07 53.4 22.4 56 262-327 290-345 (377)
65 TIGR02468 sucrsPsyn_pln sucros 97.7 0.013 2.8E-07 61.0 23.5 66 264-339 585-650 (1050)
66 cd03801 GT1_YqgM_like This fam 97.7 0.016 3.4E-07 52.9 22.5 56 262-327 287-342 (374)
67 cd04951 GT1_WbdM_like This fam 97.7 0.0045 9.8E-08 57.1 18.5 54 262-327 274-327 (360)
68 cd03805 GT1_ALG2_like This fam 97.7 0.012 2.6E-07 55.3 20.8 67 262-339 311-377 (392)
69 cd03807 GT1_WbnK_like This fam 97.6 0.013 2.8E-07 53.6 20.6 54 262-327 280-333 (365)
70 cd03811 GT1_WabH_like This fam 97.6 0.0066 1.4E-07 55.1 18.3 56 262-327 275-333 (353)
71 PF04007 DUF354: Protein of un 97.6 0.025 5.5E-07 51.9 21.6 263 7-325 10-309 (335)
72 cd03821 GT1_Bme6_like This fam 97.5 0.028 6.1E-07 51.6 20.9 67 262-340 293-359 (375)
73 cd03796 GT1_PIG-A_like This fa 97.5 0.013 2.8E-07 55.5 18.8 103 7-136 14-120 (398)
74 PRK15179 Vi polysaccharide bio 97.4 0.13 2.9E-06 52.0 25.3 72 262-341 603-674 (694)
75 cd03786 GT1_UDP-GlcNAc_2-Epime 97.4 0.0022 4.7E-08 59.8 11.7 109 207-327 197-338 (363)
76 cd03812 GT1_CapH_like This fam 97.3 0.055 1.2E-06 49.9 20.7 55 262-327 278-332 (358)
77 cd03802 GT1_AviGT4_like This f 97.3 0.045 9.7E-07 50.0 19.2 52 264-327 258-309 (335)
78 cd03792 GT1_Trehalose_phosphor 97.2 0.054 1.2E-06 50.6 19.2 64 264-339 287-350 (372)
79 PF13844 Glyco_transf_41: Glyc 97.1 0.0011 2.4E-08 62.9 7.0 75 207-281 283-391 (468)
80 cd03791 GT1_Glycogen_synthase_ 96.9 0.35 7.5E-06 46.9 21.7 56 265-326 385-442 (476)
81 KOG4626 O-linked N-acetylgluco 96.7 0.014 3.1E-07 56.3 9.9 97 208-304 758-888 (966)
82 cd04946 GT1_AmsK_like This fam 96.5 0.032 6.9E-07 53.0 11.3 70 262-340 322-391 (407)
83 COG3914 Spy Predicted O-linked 96.1 0.036 7.8E-07 53.3 9.3 81 206-288 427-543 (620)
84 cd05844 GT1_like_7 Glycosyltra 96.1 0.011 2.4E-07 54.8 5.8 66 264-339 284-349 (367)
85 PF02684 LpxB: Lipid-A-disacch 95.8 0.45 9.8E-06 44.4 15.1 82 265-352 270-362 (373)
86 cd04949 GT1_gtfA_like This fam 95.8 0.016 3.6E-07 54.0 5.6 74 262-344 290-363 (372)
87 PF06722 DUF1205: Protein of u 95.8 0.01 2.2E-07 43.8 3.3 54 195-248 27-85 (97)
88 PRK01021 lpxB lipid-A-disaccha 95.7 0.52 1.1E-05 46.5 15.6 80 266-350 499-591 (608)
89 PF00534 Glycos_transf_1: Glyc 95.7 0.025 5.4E-07 46.4 5.6 56 262-327 104-159 (172)
90 TIGR03568 NeuC_NnaA UDP-N-acet 95.6 2.1 4.5E-05 40.1 21.3 103 208-324 201-337 (365)
91 cd03822 GT1_ecORF704_like This 95.5 0.024 5.1E-07 52.2 5.6 68 263-341 281-349 (366)
92 PF13579 Glyco_trans_4_4: Glyc 95.5 0.024 5.3E-07 45.3 4.9 95 12-137 6-104 (160)
93 TIGR03088 stp2 sugar transfera 95.3 0.033 7.1E-07 52.0 5.7 68 262-339 284-351 (374)
94 PRK09814 beta-1,6-galactofuran 94.9 0.047 1E-06 50.4 5.5 66 267-346 253-318 (333)
95 cd03799 GT1_amsK_like This is 94.8 0.053 1.2E-06 49.8 5.6 67 262-338 273-339 (355)
96 TIGR02149 glgA_Coryne glycogen 94.7 0.05 1.1E-06 51.0 5.3 73 262-339 292-365 (388)
97 TIGR03087 stp1 sugar transfera 94.6 0.062 1.3E-06 50.8 5.7 66 262-339 309-375 (397)
98 PRK15427 colanic acid biosynth 94.6 0.065 1.4E-06 50.9 5.8 65 265-339 319-384 (406)
99 cd03804 GT1_wbaZ_like This fam 94.6 0.064 1.4E-06 49.6 5.6 64 265-338 275-339 (351)
100 cd03813 GT1_like_3 This family 94.6 0.065 1.4E-06 52.1 5.8 68 262-338 382-454 (475)
101 PRK09922 UDP-D-galactose:(gluc 94.4 0.12 2.7E-06 48.0 7.1 71 262-342 269-342 (359)
102 PHA01633 putative glycosyl tra 94.4 0.11 2.3E-06 47.8 6.4 60 262-327 235-308 (335)
103 PRK15484 lipopolysaccharide 1, 94.3 0.14 3E-06 48.2 7.3 54 265-327 292-345 (380)
104 TIGR02472 sucr_P_syn_N sucrose 94.3 0.08 1.7E-06 50.9 5.7 65 264-338 354-418 (439)
105 cd03809 GT1_mtfB_like This fam 94.3 0.67 1.4E-05 42.4 11.7 54 262-327 284-337 (365)
106 PF13477 Glyco_trans_4_2: Glyc 94.2 0.5 1.1E-05 37.1 9.3 91 13-137 13-107 (139)
107 TIGR00236 wecB UDP-N-acetylglu 93.7 0.13 2.8E-06 48.0 5.8 57 266-337 285-341 (365)
108 PF13524 Glyco_trans_1_2: Glyc 93.1 0.32 6.9E-06 35.3 5.8 53 262-327 10-63 (92)
109 PF12000 Glyco_trans_4_3: Gkyc 92.9 1.2 2.7E-05 36.6 9.4 30 108-137 66-96 (171)
110 COG0763 LpxB Lipid A disacchar 92.6 7.6 0.00016 36.1 15.0 83 262-345 272-363 (381)
111 PLN00142 sucrose synthase 92.5 1.1 2.4E-05 46.0 10.4 53 265-327 681-737 (815)
112 PF13692 Glyco_trans_1_4: Glyc 92.2 0.14 3E-06 40.0 3.1 53 262-326 83-135 (135)
113 KOG3349 Predicted glycosyltran 92.0 0.42 9E-06 37.9 5.3 90 210-300 5-129 (170)
114 PF13439 Glyco_transf_4: Glyco 91.8 0.59 1.3E-05 37.8 6.5 29 7-36 12-40 (177)
115 TIGR02918 accessory Sec system 91.3 0.39 8.4E-06 47.0 5.7 77 262-343 404-483 (500)
116 TIGR02470 sucr_synth sucrose s 90.8 4 8.8E-05 41.9 12.4 54 264-327 657-714 (784)
117 TIGR02472 sucr_P_syn_N sucrose 90.6 2.1 4.5E-05 41.1 9.8 104 11-137 30-145 (439)
118 PF01975 SurE: Survival protei 90.5 0.39 8.5E-06 40.5 4.2 27 13-40 16-42 (196)
119 COG1817 Uncharacterized protei 90.1 6 0.00013 35.7 11.2 108 7-144 10-119 (346)
120 PRK10125 putative glycosyl tra 88.9 4.4 9.6E-05 38.5 10.6 48 262-320 318-365 (405)
121 PHA01630 putative group 1 glyc 88.9 12 0.00025 34.5 13.0 59 262-326 221-294 (331)
122 PRK14098 glycogen synthase; Pr 88.0 2.6 5.7E-05 41.1 8.5 54 262-324 394-449 (489)
123 PF04413 Glycos_transf_N: 3-De 87.7 2.8 6.2E-05 35.0 7.5 93 5-137 29-126 (186)
124 PRK14089 ipid-A-disaccharide s 87.5 0.51 1.1E-05 43.7 3.1 76 262-344 243-332 (347)
125 TIGR03713 acc_sec_asp1 accesso 86.6 0.91 2E-05 44.5 4.5 51 262-327 439-489 (519)
126 cd01635 Glycosyltransferase_GT 86.2 5.4 0.00012 33.4 8.7 26 6-32 12-37 (229)
127 cd03806 GT1_ALG11_like This fa 86.0 1.6 3.4E-05 41.7 5.7 51 265-327 339-393 (419)
128 COG5017 Uncharacterized conser 85.5 3 6.5E-05 32.6 5.8 60 262-324 73-140 (161)
129 TIGR02470 sucr_synth sucrose s 85.3 2.2 4.8E-05 43.8 6.6 117 6-137 278-416 (784)
130 PLN00142 sucrose synthase 84.4 2.5 5.5E-05 43.5 6.5 31 108-138 408-440 (815)
131 PLN02275 transferase, transfer 84.3 21 0.00046 33.3 12.4 48 265-324 324-371 (371)
132 PLN02275 transferase, transfer 83.0 1.8 3.8E-05 40.6 4.5 51 3-56 11-62 (371)
133 cd04955 GT1_like_6 This family 82.7 1.3 2.7E-05 40.8 3.4 45 8-56 16-60 (363)
134 PLN02949 transferase, transfer 82.3 1.6 3.5E-05 42.2 4.0 66 265-340 369-437 (463)
135 cd04950 GT1_like_1 Glycosyltra 82.1 4.3 9.3E-05 38.0 6.8 49 265-327 293-341 (373)
136 COG0496 SurE Predicted acid ph 81.7 7.1 0.00015 34.2 7.3 98 13-138 16-126 (252)
137 TIGR00087 surE 5'/3'-nucleotid 81.3 9.6 0.00021 33.4 8.1 26 13-40 16-41 (244)
138 TIGR02095 glgA glycogen/starch 81.2 2.7 5.8E-05 40.8 5.2 55 265-325 380-436 (473)
139 PRK00654 glgA glycogen synthas 80.2 3 6.5E-05 40.4 5.2 55 265-325 371-427 (466)
140 PF02350 Epimerase_2: UDP-N-ac 78.9 4.2 9.1E-05 37.7 5.5 110 206-327 178-319 (346)
141 PRK00654 glgA glycogen synthas 78.3 19 0.00041 34.9 10.0 27 8-35 18-44 (466)
142 TIGR02400 trehalose_OtsA alpha 78.3 4.9 0.00011 38.8 5.9 68 262-344 366-438 (456)
143 PLN02501 digalactosyldiacylgly 77.9 4 8.6E-05 41.3 5.1 53 262-327 630-682 (794)
144 PRK10017 colanic acid biosynth 77.2 4.7 0.0001 38.6 5.3 76 264-346 336-413 (426)
145 PRK13933 stationary phase surv 76.8 15 0.00032 32.4 7.9 24 13-38 16-39 (253)
146 TIGR00715 precor6x_red precorr 76.6 17 0.00038 32.0 8.4 24 13-37 12-35 (256)
147 PRK03359 putative electron tra 75.2 29 0.00062 30.7 9.3 40 92-138 103-148 (256)
148 PRK13932 stationary phase surv 73.6 29 0.00064 30.6 8.9 25 13-39 21-45 (257)
149 PRK13935 stationary phase surv 73.2 19 0.0004 31.8 7.6 25 13-39 16-40 (253)
150 cd01424 MGS_CPS_II Methylglyox 73.1 30 0.00065 25.9 7.9 83 9-134 11-100 (110)
151 smart00851 MGS MGS-like domain 72.8 21 0.00045 25.7 6.7 32 13-52 2-33 (90)
152 PRK00346 surE 5'(3')-nucleotid 72.8 26 0.00056 30.8 8.4 25 13-39 16-40 (250)
153 cd04955 GT1_like_6 This family 72.3 29 0.00063 31.6 9.3 50 264-327 282-331 (363)
154 PLN02846 digalactosyldiacylgly 72.1 8.1 0.00018 37.3 5.5 53 262-327 312-364 (462)
155 cd00532 MGS-like MGS-like doma 72.0 29 0.00062 26.2 7.6 83 11-135 12-105 (112)
156 TIGR00236 wecB UDP-N-acetylglu 71.7 15 0.00033 34.0 7.3 106 4-135 7-116 (365)
157 PF10083 DUF2321: Uncharacteri 71.7 1.6 3.5E-05 34.7 0.6 71 273-357 74-145 (158)
158 PF02142 MGS: MGS-like domain 71.6 5.6 0.00012 29.0 3.5 84 13-133 2-94 (95)
159 cd03788 GT1_TPS Trehalose-6-Ph 71.3 8.5 0.00018 37.2 5.6 53 262-327 371-428 (460)
160 KOG0853 Glycosyltransferase [C 71.1 7.3 0.00016 37.6 4.9 99 224-338 329-441 (495)
161 cd03806 GT1_ALG11_like This fa 70.4 45 0.00097 31.8 10.3 32 108-139 107-139 (419)
162 PF08660 Alg14: Oligosaccharid 70.1 60 0.0013 26.7 10.0 35 2-36 3-38 (170)
163 PLN02846 digalactosyldiacylgly 70.1 54 0.0012 31.8 10.6 24 11-35 23-47 (462)
164 PRK13931 stationary phase surv 69.6 29 0.00063 30.7 8.1 30 108-137 87-129 (261)
165 PRK15490 Vi polysaccharide bio 69.3 11 0.00023 37.3 5.7 39 262-305 484-522 (578)
166 PRK13934 stationary phase surv 64.6 40 0.00087 29.9 7.9 26 12-39 15-40 (266)
167 TIGR03087 stp1 sugar transfera 63.8 5.1 0.00011 37.7 2.4 32 2-35 8-40 (397)
168 PLN02316 synthase/transferase 63.4 18 0.00039 38.5 6.4 58 262-326 932-998 (1036)
169 PRK14099 glycogen synthase; Pr 63.0 14 0.00031 36.0 5.3 57 265-327 384-448 (485)
170 TIGR02919 accessory Sec system 62.3 14 0.0003 35.5 5.0 54 262-327 359-412 (438)
171 PRK08057 cobalt-precorrin-6x r 62.2 72 0.0016 28.0 9.1 38 91-136 55-99 (248)
172 PRK05595 replicative DNA helic 60.6 64 0.0014 31.1 9.3 36 4-40 209-245 (444)
173 PF02951 GSH-S_N: Prokaryotic 58.6 11 0.00023 29.1 2.8 24 12-36 19-42 (119)
174 COG4370 Uncharacterized protei 58.5 28 0.0006 31.5 5.7 67 262-338 317-387 (412)
175 COG1066 Sms Predicted ATP-depe 57.2 16 0.00035 34.4 4.2 35 5-41 102-136 (456)
176 PF09001 DUF1890: Domain of un 56.9 10 0.00023 29.6 2.5 30 12-42 15-44 (139)
177 cd03793 GT1_Glycogen_synthase_ 56.2 25 0.00055 34.9 5.6 61 264-327 488-553 (590)
178 cd01421 IMPCH Inosine monophos 55.5 53 0.0012 27.4 6.6 44 13-67 13-56 (187)
179 PF06925 MGDG_synth: Monogalac 55.2 33 0.00071 28.0 5.5 43 88-137 76-124 (169)
180 PRK12342 hypothetical protein; 55.0 28 0.0006 30.7 5.2 40 92-138 100-145 (254)
181 cd01423 MGS_CPS_I_III Methylgl 54.5 77 0.0017 23.9 7.1 85 11-134 13-106 (116)
182 PF04127 DFP: DNA / pantothena 53.4 14 0.00031 30.8 3.1 30 3-35 24-53 (185)
183 PF05225 HTH_psq: helix-turn-h 52.9 23 0.00051 21.8 3.2 26 312-340 1-26 (45)
184 PF07355 GRDB: Glycine/sarcosi 52.6 29 0.00063 31.9 5.0 42 87-135 66-117 (349)
185 COG0381 WecB UDP-N-acetylgluco 52.4 29 0.00063 32.4 5.1 55 267-336 293-347 (383)
186 cd02067 B12-binding B12 bindin 52.4 22 0.00048 27.0 3.8 35 2-37 5-39 (119)
187 PLN03063 alpha,alpha-trehalose 52.3 25 0.00054 36.7 5.2 55 262-327 386-444 (797)
188 PRK09922 UDP-D-galactose:(gluc 51.2 53 0.0011 30.3 6.9 24 11-35 18-43 (359)
189 PF02558 ApbA: Ketopantoate re 50.9 17 0.00037 28.8 3.1 33 15-53 12-44 (151)
190 PRK08006 replicative DNA helic 50.8 1.7E+02 0.0037 28.5 10.4 36 4-40 232-268 (471)
191 TIGR02482 PFKA_ATP 6-phosphofr 50.6 45 0.00098 30.2 6.0 50 222-288 76-129 (301)
192 COG0299 PurN Folate-dependent 50.4 33 0.00072 28.8 4.6 158 92-323 13-172 (200)
193 TIGR03088 stp2 sugar transfera 50.3 1.1E+02 0.0024 28.1 9.0 92 6-134 13-108 (374)
194 PRK06321 replicative DNA helic 50.2 2.1E+02 0.0046 27.9 10.9 36 4-40 234-270 (472)
195 TIGR03600 phage_DnaB phage rep 50.0 1.7E+02 0.0036 27.9 10.2 37 3-40 201-238 (421)
196 COG0801 FolK 7,8-dihydro-6-hyd 49.8 39 0.00085 27.4 4.9 35 210-244 3-37 (160)
197 cd03822 GT1_ecORF704_like This 49.6 36 0.00078 30.8 5.5 29 6-35 12-40 (366)
198 PRK08506 replicative DNA helic 48.5 1.9E+02 0.004 28.2 10.3 37 3-40 199-235 (472)
199 PF02571 CbiJ: Precorrin-6x re 47.9 1.7E+02 0.0036 25.8 9.0 38 91-136 56-100 (249)
200 COG2910 Putative NADH-flavin r 47.7 18 0.00039 30.2 2.6 20 15-35 15-34 (211)
201 cd03799 GT1_amsK_like This is 47.6 1.8E+02 0.0038 26.2 9.8 24 11-35 15-38 (355)
202 PRK08760 replicative DNA helic 47.5 1.5E+02 0.0032 29.0 9.4 38 3-40 236-273 (476)
203 PF00731 AIRC: AIR carboxylase 46.4 1.1E+02 0.0024 24.5 7.0 78 262-347 67-149 (150)
204 PF08323 Glyco_transf_5: Starc 46.2 17 0.00038 31.8 2.6 23 12-35 21-43 (245)
205 PLN02939 transferase, transfer 45.6 39 0.00086 35.7 5.3 58 262-325 869-930 (977)
206 cd01635 Glycosyltransferase_GT 45.1 14 0.00031 30.7 2.0 31 108-138 51-84 (229)
207 TIGR00745 apbA_panE 2-dehydrop 44.8 24 0.00053 31.4 3.5 33 15-53 5-37 (293)
208 PRK14501 putative bifunctional 44.6 23 0.00051 36.5 3.6 57 262-327 372-429 (726)
209 cd01840 SGNH_hydrolase_yrhL_li 43.8 82 0.0018 24.9 6.1 37 208-245 51-87 (150)
210 COG2099 CobK Precorrin-6x redu 43.5 2E+02 0.0044 25.3 8.6 36 94-136 189-229 (257)
211 cd00764 Eukaryotic_PFK Phospho 43.0 92 0.002 32.3 7.4 71 195-288 442-522 (762)
212 cd00763 Bacterial_PFK Phosphof 42.4 77 0.0017 29.0 6.2 49 222-287 77-128 (317)
213 COG1703 ArgK Putative periplas 41.8 1E+02 0.0022 28.0 6.6 33 4-37 59-91 (323)
214 PRK08840 replicative DNA helic 41.8 2.8E+02 0.006 27.0 10.3 37 4-40 225-261 (464)
215 PRK09165 replicative DNA helic 41.6 1.8E+02 0.004 28.5 9.1 38 3-41 224-276 (497)
216 PRK00881 purH bifunctional pho 41.4 94 0.002 30.4 6.8 45 13-68 17-61 (513)
217 TIGR01917 gly_red_sel_B glycin 41.2 51 0.0011 31.2 4.9 42 87-135 62-113 (431)
218 TIGR01918 various_sel_PB selen 41.0 52 0.0011 31.2 4.9 42 88-136 63-114 (431)
219 TIGR00347 bioD dethiobiotin sy 40.9 1.9E+02 0.0041 23.1 10.6 26 5-31 7-32 (166)
220 PF02350 Epimerase_2: UDP-N-ac 40.8 76 0.0017 29.4 6.1 43 88-137 54-99 (346)
221 COG2099 CobK Precorrin-6x redu 40.8 2.3E+02 0.0049 25.0 8.4 39 90-136 55-100 (257)
222 COG1484 DnaC DNA replication p 40.5 29 0.00064 30.6 3.2 38 4-42 113-150 (254)
223 PRK00039 ruvC Holliday junctio 40.3 90 0.0019 25.5 5.7 45 87-138 47-106 (164)
224 PF02571 CbiJ: Precorrin-6x re 40.2 2.6E+02 0.0056 24.6 9.4 103 13-136 118-226 (249)
225 PF09314 DUF1972: Domain of un 39.9 47 0.001 27.7 4.1 40 13-56 23-62 (185)
226 PLN02891 IMP cyclohydrolase 39.9 82 0.0018 30.9 6.1 47 12-69 34-80 (547)
227 cd00561 CobA_CobO_BtuR ATP:cor 39.3 2.1E+02 0.0045 23.2 8.9 28 2-30 8-35 (159)
228 PF14626 RNase_Zc3h12a_2: Zc3h 39.1 30 0.00065 26.4 2.5 31 10-41 9-39 (122)
229 TIGR01283 nifE nitrogenase mol 39.1 2.3E+02 0.005 27.3 9.4 36 91-136 385-420 (456)
230 PF00070 Pyr_redox: Pyridine n 38.1 47 0.001 23.0 3.4 22 13-35 11-32 (80)
231 TIGR03878 thermo_KaiC_2 KaiC d 38.0 79 0.0017 27.9 5.6 33 4-37 44-76 (259)
232 COG0438 RfaG Glycosyltransfera 37.8 95 0.0021 27.2 6.3 56 262-327 287-343 (381)
233 PRK03202 6-phosphofructokinase 37.8 81 0.0018 28.9 5.6 71 195-288 54-130 (320)
234 TIGR01285 nifN nitrogenase mol 37.7 2.9E+02 0.0064 26.5 9.7 35 92-136 364-398 (432)
235 TIGR02193 heptsyl_trn_I lipopo 37.6 82 0.0018 28.5 5.8 40 3-42 6-46 (319)
236 TIGR00355 purH phosphoribosyla 37.6 1.4E+02 0.003 29.2 7.3 45 13-68 13-57 (511)
237 cd01981 Pchlide_reductase_B Pc 37.6 56 0.0012 31.2 4.9 27 108-137 370-396 (430)
238 COG0381 WecB UDP-N-acetylgluco 37.1 99 0.0021 29.0 6.0 45 85-136 76-123 (383)
239 COG3340 PepE Peptidase E [Amin 36.8 1.3E+02 0.0029 25.7 6.2 84 197-281 23-125 (224)
240 PRK07773 replicative DNA helic 36.7 2.6E+02 0.0056 29.8 9.9 38 4-41 225-262 (886)
241 PF09334 tRNA-synt_1g: tRNA sy 36.7 31 0.00066 32.6 2.8 29 7-36 16-47 (391)
242 TIGR02853 spore_dpaA dipicolin 36.6 1.5E+02 0.0033 26.6 7.2 21 13-34 13-33 (287)
243 cd01141 TroA_d Periplasmic bin 36.3 54 0.0012 26.9 4.0 40 90-137 59-100 (186)
244 PF13450 NAD_binding_8: NAD(P) 35.8 46 0.001 22.4 2.9 21 14-35 9-29 (68)
245 TIGR00665 DnaB replicative DNA 35.5 3.5E+02 0.0075 25.8 9.9 37 4-40 203-239 (434)
246 PF02310 B12-binding: B12 bind 35.4 83 0.0018 23.6 4.7 32 3-35 7-38 (121)
247 TIGR02095 glgA glycogen/starch 35.1 34 0.00074 33.1 3.0 24 11-35 21-44 (473)
248 CHL00076 chlB photochlorophyll 34.9 61 0.0013 31.9 4.7 26 108-136 374-399 (513)
249 PRK05636 replicative DNA helic 34.6 2.4E+02 0.0053 27.7 8.7 36 4-40 273-309 (505)
250 PF07302 AroM: AroM protein; 34.6 1E+02 0.0022 26.5 5.4 28 108-135 178-208 (221)
251 COG4081 Uncharacterized protei 34.5 30 0.00065 26.8 1.9 30 10-40 18-47 (148)
252 PRK02910 light-independent pro 34.4 70 0.0015 31.5 5.0 26 108-136 362-387 (519)
253 TIGR01278 DPOR_BchB light-inde 34.1 67 0.0015 31.6 4.8 27 108-137 364-390 (511)
254 PRK09620 hypothetical protein; 33.8 51 0.0011 28.6 3.5 29 3-34 24-52 (229)
255 TIGR00708 cobA cob(I)alamin ad 33.6 2.7E+02 0.0059 22.9 9.1 29 2-31 11-39 (173)
256 PRK13982 bifunctional SbtC-lik 33.6 54 0.0012 31.8 3.9 21 14-35 286-306 (475)
257 PF04244 DPRP: Deoxyribodipyri 33.5 51 0.0011 28.5 3.4 26 9-35 47-72 (224)
258 PRK07004 replicative DNA helic 33.3 4.3E+02 0.0093 25.6 10.1 37 3-40 220-257 (460)
259 TIGR02478 6PF1K_euk 6-phosphof 33.1 1.5E+02 0.0033 30.7 7.3 54 216-286 457-520 (745)
260 COG2874 FlaH Predicted ATPases 32.6 78 0.0017 27.2 4.2 29 8-37 40-68 (235)
261 cd03412 CbiK_N Anaerobic cobal 32.5 74 0.0016 24.6 4.0 37 209-245 2-40 (127)
262 PLN02331 phosphoribosylglycina 32.4 93 0.002 26.5 4.8 43 92-135 12-55 (207)
263 cd01976 Nitrogenase_MoFe_alpha 32.3 64 0.0014 30.8 4.3 37 91-137 359-395 (421)
264 PF06506 PrpR_N: Propionate ca 32.2 80 0.0017 25.9 4.4 120 8-141 17-155 (176)
265 COG1618 Predicted nucleotide k 32.1 1.2E+02 0.0026 24.9 5.0 47 4-56 13-59 (179)
266 PRK10353 3-methyl-adenine DNA 32.0 76 0.0017 26.5 4.1 67 279-349 22-101 (187)
267 COG0143 MetG Methionyl-tRNA sy 32.0 45 0.00098 33.1 3.2 30 7-37 22-54 (558)
268 PF10649 DUF2478: Protein of u 31.8 2.8E+02 0.0061 22.5 10.4 31 4-35 6-37 (159)
269 COG0052 RpsB Ribosomal protein 31.3 83 0.0018 27.5 4.3 31 109-139 157-189 (252)
270 PF01497 Peripla_BP_2: Peripla 31.1 74 0.0016 27.1 4.2 32 108-139 60-93 (238)
271 COG0297 GlgA Glycogen synthase 31.0 1.1E+02 0.0023 30.0 5.5 75 262-349 381-459 (487)
272 cd03466 Nitrogenase_NifN_2 Nit 31.0 77 0.0017 30.4 4.6 26 108-136 372-397 (429)
273 PLN02470 acetolactate synthase 30.8 1.2E+02 0.0026 30.4 6.1 18 264-281 92-109 (585)
274 cd01965 Nitrogenase_MoFe_beta_ 30.6 75 0.0016 30.4 4.5 26 108-136 371-396 (428)
275 cd01121 Sms Sms (bacterial rad 30.6 4.6E+02 0.01 24.6 10.5 35 5-40 91-125 (372)
276 COG2230 Cfa Cyclopropane fatty 30.3 37 0.00081 30.4 2.1 92 195-300 28-121 (283)
277 COG1698 Uncharacterized protei 30.2 96 0.0021 22.3 3.7 33 314-350 16-48 (93)
278 PF01012 ETF: Electron transfe 29.6 1E+02 0.0022 24.8 4.5 41 90-137 79-122 (164)
279 TIGR02483 PFK_mixed phosphofru 29.0 1.3E+02 0.0028 27.7 5.4 69 195-286 54-129 (324)
280 PRK11199 tyrA bifunctional cho 28.9 3E+02 0.0065 25.8 8.1 19 15-34 113-131 (374)
281 cd07038 TPP_PYR_PDC_IPDC_like 28.9 69 0.0015 25.9 3.4 18 264-281 75-92 (162)
282 PRK02261 methylaspartate mutas 28.6 92 0.002 24.5 3.9 38 2-40 9-46 (137)
283 PF01210 NAD_Gly3P_dh_N: NAD-d 28.2 57 0.0012 26.2 2.8 21 14-35 12-32 (157)
284 cd00672 CysRS_core catalytic c 28.2 65 0.0014 27.6 3.2 30 6-36 35-67 (213)
285 cd01147 HemV-2 Metal binding p 27.9 91 0.002 27.1 4.3 31 108-138 74-107 (262)
286 PRK00994 F420-dependent methyl 27.8 4.2E+02 0.009 23.2 8.9 91 202-305 23-116 (277)
287 PF02441 Flavoprotein: Flavopr 27.7 64 0.0014 24.9 2.9 34 8-42 11-44 (129)
288 TIGR02655 circ_KaiC circadian 27.3 77 0.0017 30.9 3.9 37 4-41 271-307 (484)
289 PF01380 SIS: SIS domain SIS d 27.3 1.6E+02 0.0035 22.2 5.1 43 5-53 61-103 (131)
290 PRK08305 spoVFB dipicolinate s 26.8 72 0.0016 26.9 3.1 31 8-39 16-47 (196)
291 COG0162 TyrS Tyrosyl-tRNA synt 26.5 68 0.0015 30.4 3.2 26 7-34 48-73 (401)
292 PRK14072 6-phosphofructokinase 26.1 1.5E+02 0.0032 28.4 5.5 48 222-286 88-144 (416)
293 COG1090 Predicted nucleoside-d 26.0 64 0.0014 28.8 2.8 23 14-37 12-34 (297)
294 cd01974 Nitrogenase_MoFe_beta 26.0 1.2E+02 0.0027 29.0 5.1 26 108-136 377-402 (435)
295 PRK14075 pnk inorganic polypho 25.9 2.9E+02 0.0064 24.3 7.0 79 224-327 13-95 (256)
296 COG2085 Predicted dinucleotide 25.8 77 0.0017 27.0 3.1 23 14-37 14-36 (211)
297 PF06180 CbiK: Cobalt chelatas 25.7 1.3E+02 0.0027 26.8 4.6 38 209-246 2-42 (262)
298 TIGR01286 nifK nitrogenase mol 25.7 1E+02 0.0023 30.3 4.5 26 108-136 437-462 (515)
299 cd01980 Chlide_reductase_Y Chl 25.5 1.1E+02 0.0024 29.1 4.6 27 108-137 350-376 (416)
300 TIGR00421 ubiX_pad polyprenyl 25.3 91 0.002 25.9 3.5 28 13-41 15-42 (181)
301 cd07037 TPP_PYR_MenD Pyrimidin 25.2 1.1E+02 0.0024 24.9 3.9 20 262-281 74-93 (162)
302 TIGR01675 plant-AP plant acid 24.9 91 0.002 27.0 3.5 27 10-37 122-148 (229)
303 TIGR02193 heptsyl_trn_I lipopo 24.5 5.2E+02 0.011 23.2 9.3 120 200-324 171-319 (319)
304 PLN02501 digalactosyldiacylgly 24.5 5E+02 0.011 27.0 8.8 31 2-33 333-363 (794)
305 PRK06732 phosphopantothenate-- 24.4 81 0.0018 27.3 3.2 20 14-34 30-49 (229)
306 PRK14071 6-phosphofructokinase 24.3 1.6E+02 0.0034 27.6 5.2 47 223-286 93-143 (360)
307 cd06559 Endonuclease_V Endonuc 24.2 76 0.0016 27.1 2.9 42 91-137 81-129 (208)
308 cd01715 ETF_alpha The electron 24.2 1.7E+02 0.0037 23.7 4.9 41 91-138 73-116 (168)
309 PF13460 NAD_binding_10: NADH( 24.2 1.7E+02 0.0037 23.6 5.0 34 14-54 12-45 (183)
310 PF08026 Antimicrobial_5: Bee 23.8 13 0.00028 21.4 -1.2 24 2-26 16-39 (39)
311 PLN02929 NADH kinase 23.8 4.6E+02 0.01 23.8 7.9 95 222-327 32-138 (301)
312 PF00391 PEP-utilizers: PEP-ut 23.8 1.5E+02 0.0032 20.7 3.9 29 108-136 30-60 (80)
313 COG2327 WcaK Polysaccharide py 23.7 2E+02 0.0043 27.2 5.6 57 264-327 294-351 (385)
314 PF08030 NAD_binding_6: Ferric 23.6 65 0.0014 25.5 2.3 40 209-248 3-47 (156)
315 PRK14092 2-amino-4-hydroxy-6-h 23.6 1.9E+02 0.0041 23.6 4.9 31 206-236 5-35 (163)
316 TIGR02201 heptsyl_trn_III lipo 23.4 5.7E+02 0.012 23.3 9.8 101 3-134 6-108 (344)
317 PRK12921 2-dehydropantoate 2-r 23.2 1E+02 0.0022 27.6 3.8 28 14-42 13-40 (305)
318 PRK12595 bifunctional 3-deoxy- 22.7 6E+02 0.013 23.8 8.7 109 211-325 120-250 (360)
319 TIGR00228 ruvC crossover junct 22.6 2.4E+02 0.0052 22.9 5.2 46 86-138 42-102 (156)
320 TIGR00639 PurN phosphoribosylg 22.4 2E+02 0.0044 24.0 5.1 141 109-323 30-172 (190)
321 cd01828 sialate_O-acetylestera 22.2 3E+02 0.0065 21.8 6.1 49 197-247 40-97 (169)
322 PRK14478 nitrogenase molybdenu 22.1 1.1E+02 0.0024 29.8 3.9 25 108-135 393-417 (475)
323 PF05693 Glycogen_syn: Glycoge 22.0 66 0.0014 32.1 2.3 39 109-147 142-183 (633)
324 COG1400 SEC65 Signal recogniti 21.8 77 0.0017 23.1 2.1 41 277-324 4-45 (93)
325 cd00529 RuvC_resolvase Hollida 21.6 3.2E+02 0.0069 21.8 6.0 26 87-119 45-70 (154)
326 PF05728 UPF0227: Uncharacteri 21.5 1.9E+02 0.004 24.2 4.7 29 111-139 62-91 (187)
327 KOG3076 5'-phosphoribosylglyci 21.4 2E+02 0.0043 24.1 4.5 46 90-135 17-64 (206)
328 TIGR00288 conserved hypothetic 21.3 2.2E+02 0.0047 23.2 4.8 29 13-42 118-147 (160)
329 cd01832 SGNH_hydrolase_like_1 21.2 3.3E+02 0.0072 21.9 6.2 36 210-245 70-113 (185)
330 TIGR01689 EcbF-BcbF capsule bi 21.1 1.4E+02 0.0029 23.2 3.5 25 12-37 28-52 (126)
331 cd01916 ACS_1 Acetyl-CoA synth 21.0 1.1E+02 0.0023 31.6 3.6 33 105-138 263-297 (731)
332 PLN02828 formyltetrahydrofolat 21.0 2.1E+02 0.0045 25.5 5.0 61 256-323 179-240 (268)
333 TIGR02015 BchY chlorophyllide 20.9 1.1E+02 0.0024 29.3 3.5 26 108-136 355-380 (422)
334 cd01985 ETF The electron trans 20.9 2.2E+02 0.0047 23.3 5.0 40 91-137 81-123 (181)
335 PRK06249 2-dehydropantoate 2-r 20.8 1.5E+02 0.0032 26.9 4.3 32 15-53 19-50 (313)
336 cd01829 SGNH_hydrolase_peri2 S 20.8 3.9E+02 0.0086 21.8 6.7 49 197-246 50-117 (200)
337 PF03720 UDPG_MGDP_dh_C: UDP-g 20.7 1.2E+02 0.0027 22.4 3.1 29 11-40 17-45 (106)
338 PRK02155 ppnK NAD(+)/NADH kina 20.7 3.9E+02 0.0086 24.0 6.9 46 262-327 71-120 (291)
339 PRK06555 pyrophosphate--fructo 20.7 2.3E+02 0.005 26.9 5.5 49 223-288 98-155 (403)
340 PRK05920 aromatic acid decarbo 20.6 1.2E+02 0.0026 25.8 3.4 31 10-41 16-46 (204)
341 PF09884 DUF2111: Uncharacteri 20.5 41 0.0009 23.8 0.5 19 267-285 51-69 (84)
342 PF04558 tRNA_synt_1c_R1: Glut 20.5 80 0.0017 25.8 2.2 32 287-327 102-133 (164)
343 PRK05647 purN phosphoribosylgl 20.2 2.3E+02 0.0051 23.9 5.1 28 109-136 31-58 (200)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-56 Score=425.40 Aligned_cols=349 Identities=28% Similarity=0.496 Sum_probs=254.2
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCC----CCCCeEEEeccCCccCCCCCCCCCCCCCCCc
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLP----QSSPIHFLETPFNIIDHDLPPCTENTDSHPF 76 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 76 (358)
++|||++||++||++||+.|+. +|+.|||++++.+...+.+... .+..++|+.+|++...+++|++.+.....+.
T Consensus 13 ~vPfpaqGHi~P~l~LAk~La~-~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~~~~~ 91 (491)
T PLN02534 13 LIPLMAQGHMIPMIDMARLLAE-RGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLDTLPS 91 (491)
T ss_pred EECCCCcchHHHHHHHHHHHHh-CCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccccCCc
Confidence 5899999999999999999999 9999999999988765544221 0124899999976444678766444333222
Q ss_pred -hHHHHHHHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhhccCCC
Q 044624 77 -DVVRKLLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLWVDLPH 155 (358)
Q Consensus 77 -~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~ 155 (358)
.....+......+.+.+++++++. .. +++|||+|.+++|+.++|+++|||++.|++++++....+++...+.+.
T Consensus 92 ~~~~~~~~~~~~~l~~~l~~lL~~~----~~-pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~ 166 (491)
T PLN02534 92 RDLLRKFYDAVDKLQQPLERFLEQA----KP-PPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAH 166 (491)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhc----CC-CCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhccc
Confidence 122233334456777888888753 12 679999999999999999999999999999988777654432221111
Q ss_pred CCC--CCCccccCCCCCC-----------c-c----------------------------------------c-Cccccc
Q 044624 156 RNT--DSDEFLLLDFPEA-----------S-T----------------------------------------I-HPVLRF 180 (358)
Q Consensus 156 ~~~--~~~~~~~p~~~~~-----------~-~----------------------------------------~-~p~~~~ 180 (358)
... ..+.+.+|++|.. + . + .|+++.
T Consensus 167 ~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~V 246 (491)
T PLN02534 167 LSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVWCV 246 (491)
T ss_pred ccCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEEEE
Confidence 000 0011223333210 0 0 0 022222
Q ss_pred CCCCCCC----------CCCCCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCC---
Q 044624 181 TGSKAGA----------GKEHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPP--- 247 (358)
Q Consensus 181 ~~~~~~~----------~~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~--- 247 (358)
||.... +........+|.+|||+++++|||||||||...++.+++.+++.||+.++++|||+++.+
T Consensus 247 -GPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~ 325 (491)
T PLN02534 247 -GPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKH 325 (491)
T ss_pred -CcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccc
Confidence 443210 000011245799999999999999999999999999999999999999999999999842
Q ss_pred ---------CCCCCC--C-CCC-cccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhhhhccc
Q 044624 248 ---------IGFDIN--S-EFR-ANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEV 297 (358)
Q Consensus 248 ---------~~~~~~--~-~~~-~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~ 297 (358)
+++.+. . +.+ .+|+ |||||++||+++|||||++|+++||+.||+++++.|
T Consensus 326 ~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~ 405 (491)
T PLN02534 326 SELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVL 405 (491)
T ss_pred cchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhh
Confidence 112211 1 122 3676 999999999999999999999999999999999999
Q ss_pred cceEEecc------c-CC--c-cccHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHhhcc-CccccCC
Q 044624 298 GVCAEVAR------G-MN--C-AVLKEHIVVKIELVMN--ETEKGKPMRMKDLEVKEIIDNAFRN-DENLRDL 357 (358)
Q Consensus 298 G~G~~l~~------~-~~--~-~~~~~~l~~ai~~ll~--~~~~~~~~r~~a~~l~~~~~~a~~~-gss~~~~ 357 (358)
|+|+++.. + ++ + .+++++|+++|+++|. ++ +|+++|+||++|++++++|+++ |||++||
T Consensus 406 ~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~e-eg~~~R~rA~elk~~a~~Av~~GGSS~~nl 477 (491)
T PLN02534 406 RIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGE-EGERRRRRAQELGVMARKAMELGGSSHINL 477 (491)
T ss_pred cceEEecccccccccccccccCccCHHHHHHHHHHHhccccc-cHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999842 1 11 1 4899999999999997 34 7889999999999999999999 9999886
No 2
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.4e-56 Score=420.82 Aligned_cols=345 Identities=29% Similarity=0.480 Sum_probs=254.2
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHH
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVR 80 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
++|||++||++||++||+.|+. +|+.|||++|+.+..++.+.....+++++..+|++ ..+++|++.+..+..+.....
T Consensus 14 l~PfpaqGHi~P~l~LAk~La~-~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P-~~~~lPdG~~~~~~~~~~~~~ 91 (477)
T PLN02863 14 VFPFPAQGHMIPLLDLTHRLAL-RGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFP-SHPSIPSGVENVKDLPPSGFP 91 (477)
T ss_pred EecCcccchHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCC-CcCCCCCCCcChhhcchhhHH
Confidence 5899999999999999999999 99999999999988777653211146888888875 335677665544333322223
Q ss_pred HHHHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhhccCCCCCC--
Q 044624 81 KLLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLWVDLPHRNT-- 158 (358)
Q Consensus 81 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~-- 158 (358)
.+......+.+.+.+++++. .. +++|||+|.+++|+.++|+++|||++.|++++++.++.++++....+....
T Consensus 92 ~~~~a~~~~~~~~~~~l~~~----~~-~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~~~ 166 (477)
T PLN02863 92 LMIHALGELYAPLLSWFRSH----PS-PPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKINPD 166 (477)
T ss_pred HHHHHHHHhHHHHHHHHHhC----CC-CCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccccccccc
Confidence 34444456677777777763 12 679999999999999999999999999999999988877665433222110
Q ss_pred C-CCcc---ccCCCCC--------Ccc-------c---------------------------------------Cccccc
Q 044624 159 D-SDEF---LLLDFPE--------AST-------I---------------------------------------HPVLRF 180 (358)
Q Consensus 159 ~-~~~~---~~p~~~~--------~~~-------~---------------------------------------~p~~~~ 180 (358)
. .+.. .+|+++. .+. . .|+++.
T Consensus 167 ~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v~~I 246 (477)
T PLN02863 167 DQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDRVWAV 246 (477)
T ss_pred ccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCCeEEe
Confidence 0 0011 2343321 000 0 012222
Q ss_pred CCCCCCCC----------CCCCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCC-
Q 044624 181 TGSKAGAG----------KEHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIG- 249 (358)
Q Consensus 181 ~~~~~~~~----------~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~- 249 (358)
||..... ......+.+|.+|||.++++|||||||||+..++.+++++++.+|+.++++|||+++.+..
T Consensus 247 -GPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~ 325 (477)
T PLN02863 247 -GPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNE 325 (477)
T ss_pred -CCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCccc
Confidence 4442110 0001124579999999998999999999999999999999999999999999999985321
Q ss_pred ------CCCC-------CCC-Ccccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhhhhcccc
Q 044624 250 ------FDIN-------SEF-RANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVG 298 (358)
Q Consensus 250 ------~~~~-------~~~-~~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G 298 (358)
+... .+. +.+|+ |||||++||+++|||||+||+++||+.||+++++.||
T Consensus 326 ~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~g 405 (477)
T PLN02863 326 ESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELK 405 (477)
T ss_pred ccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhc
Confidence 1100 011 23675 9999999999999999999999999999999998889
Q ss_pred ceEEecccCCccccHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHhhcc-CccccCC
Q 044624 299 VCAEVARGMNCAVLKEHIVVKIELVM-NETEKGKPMRMKDLEVKEIIDNAFRN-DENLRDL 357 (358)
Q Consensus 299 ~G~~l~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~r~~a~~l~~~~~~a~~~-gss~~~~ 357 (358)
+|+++..+....++.+++.++|+++| +++ +||+||++|++.+++|+++ |||++||
T Consensus 406 vG~~~~~~~~~~~~~~~v~~~v~~~m~~~~----~~r~~a~~l~e~a~~Av~~gGSS~~~l 462 (477)
T PLN02863 406 VAVRVCEGADTVPDSDELARVFMESVSENQ----VERERAKELRRAALDAIKERGSSVKDL 462 (477)
T ss_pred eeEEeccCCCCCcCHHHHHHHHHHHhhccH----HHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 99999542223568999999999999 444 9999999999999999999 9999875
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.5e-56 Score=417.64 Aligned_cols=335 Identities=23% Similarity=0.396 Sum_probs=246.6
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCC-CCCCCCCchHH
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCT-ENTDSHPFDVV 79 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~ 79 (358)
+||||++||++||++||+.|+. +|+.|||++++.+... .. ....+++|..+| +++|+.. +.. . .
T Consensus 12 lvPfpaqGHi~P~l~LAk~La~-~G~~VT~v~T~~n~~~--~~-~~~~~i~~~~ip-----~glp~~~~~~~---~--~- 76 (451)
T PLN02410 12 LVPVPAQGHISPMMQLAKTLHL-KGFSITIAQTKFNYFS--PS-DDFTDFQFVTIP-----ESLPESDFKNL---G--P- 76 (451)
T ss_pred EECCCccccHHHHHHHHHHHHc-CCCEEEEEeCcccccc--cc-cCCCCeEEEeCC-----CCCCccccccc---C--H-
Confidence 5899999999999999999999 9999999999876521 11 101468888777 4666531 211 1 1
Q ss_pred HHHHHHH-hhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhhcc------
Q 044624 80 RKLLEAT-LSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLWVD------ 152 (358)
Q Consensus 80 ~~~~~~~-~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~------ 152 (358)
..+.... ..+.+.++++++++...... +++|||+|.+++|+.++|+++|||++.|++++++.+..+.++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~-p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~ 155 (451)
T PLN02410 77 IEFLHKLNKECQVSFKDCLGQLVLQQGN-EIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVL 155 (451)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccCC-CcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCC
Confidence 1233323 45667788888765321112 569999999999999999999999999999998877655543211
Q ss_pred CCCCCC-CCCccccCCCCC--------Ccc---------------cC---------------------------cccccC
Q 044624 153 LPHRNT-DSDEFLLLDFPE--------AST---------------IH---------------------------PVLRFT 181 (358)
Q Consensus 153 ~p~~~~-~~~~~~~p~~~~--------~~~---------------~~---------------------------p~~~~~ 181 (358)
.|.... ..+...+|+++. ... .+ |+++.
T Consensus 156 ~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~v- 234 (451)
T PLN02410 156 APLKEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNTVDKRTASSVIINTASCLESSSLSRLQQQLQIPVYPI- 234 (451)
T ss_pred CCccccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHHhhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEe-
Confidence 121110 001122343321 000 00 23332
Q ss_pred CCCCCCC---CCCCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCC----------
Q 044624 182 GSKAGAG---KEHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPI---------- 248 (358)
Q Consensus 182 ~~~~~~~---~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~---------- 248 (358)
|+..... ........+|.+|||+++++|||||||||...++.+++++++.||+.++++|||+++.+.
T Consensus 235 Gpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~l 314 (451)
T PLN02410 235 GPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESL 314 (451)
T ss_pred cccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcC
Confidence 4432110 111123457999999999999999999999999999999999999999999999998431
Q ss_pred --CCCC---CCCCCcccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEeccc
Q 044624 249 --GFDI---NSEFRANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARG 306 (358)
Q Consensus 249 --~~~~---~~~~~~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 306 (358)
++.+ ..+.+.+|+ |||||++||+++|||||+||+++||+.||+++++.||+|++++
T Consensus 315 p~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-- 392 (451)
T PLN02410 315 PKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-- 392 (451)
T ss_pred ChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC--
Confidence 1111 112344776 9999999999999999999999999999999999999999996
Q ss_pred CCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcc-CccccCC
Q 044624 307 MNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNAFRN-DENLRDL 357 (358)
Q Consensus 307 ~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~~~~~~a~~~-gss~~~~ 357 (358)
+.+++++|+++|+++|.++ ++++||++|+++++++++|+++ |||++||
T Consensus 393 --~~~~~~~v~~av~~lm~~~-~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l 441 (451)
T PLN02410 393 --GDLDRGAVERAVKRLMVEE-EGEEMRKRAISLKEQLRASVISGGSSHNSL 441 (451)
T ss_pred --CcccHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3789999999999999988 7889999999999999999999 9999875
No 4
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=3e-55 Score=415.41 Aligned_cols=335 Identities=24% Similarity=0.373 Sum_probs=244.4
Q ss_pred CcccCCCcChHHHHHHHHH--HHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchH
Q 044624 1 MLPFMAQGHVIPFLALAHH--LESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDV 78 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~--L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
++|||++||++||++||+. |++ ||++|||++++.+..++.........+++..+| +++|+..+ . .
T Consensus 13 ~~P~pa~GHi~P~l~La~~L~L~~-~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~-----~glp~~~~---~----~ 79 (456)
T PLN02210 13 MVTLAFQGHINPMLKLAKHLSLSS-KNLHFTLATTEQARDLLSTVEKPRRPVDLVFFS-----DGLPKDDP---R----A 79 (456)
T ss_pred EeCCcccccHHHHHHHHHHHHhhc-CCcEEEEEeccchhhhhccccCCCCceEEEECC-----CCCCCCcc---c----C
Confidence 5899999999999999999 559 999999999998876664321111345555444 46665431 1 1
Q ss_pred HHHHHHHH-hhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhhc-cCCCC
Q 044624 79 VRKLLEAT-LSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLWV-DLPHR 156 (358)
Q Consensus 79 ~~~~~~~~-~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~-~~p~~ 156 (358)
...+...+ ..+.+.+++++++. +|||||+|.+++|+.++|+++|||++.|++++++.+..+.+... ..+..
T Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~~-------~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~ 152 (456)
T PLN02210 80 PETLLKSLNKVGAKNLSKIIEEK-------RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFP 152 (456)
T ss_pred HHHHHHHHHHhhhHHHHHHHhcC-------CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCC
Confidence 12233333 45566777777765 79999999999999999999999999999988877766554311 10110
Q ss_pred CCC--CCccccCCCCC--------Ccc------c------------------------------------CcccccCCCC
Q 044624 157 NTD--SDEFLLLDFPE--------AST------I------------------------------------HPVLRFTGSK 184 (358)
Q Consensus 157 ~~~--~~~~~~p~~~~--------~~~------~------------------------------------~p~~~~~~~~ 184 (358)
... .+...+|+++. .+. + .|+++. ||.
T Consensus 153 ~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~~V-GPl 231 (456)
T PLN02210 153 DLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADLKPVIPI-GPL 231 (456)
T ss_pred cccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEEEE-ccc
Confidence 000 01112333321 000 0 022222 443
Q ss_pred CC-----CCC----C-----CCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCC-
Q 044624 185 AG-----AGK----E-----HGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIG- 249 (358)
Q Consensus 185 ~~-----~~~----~-----~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~- 249 (358)
.. ... . ....+.+|.+|||+++++|||||||||....+.+++++++.||+.++++|||+++....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~ 311 (456)
T PLN02210 232 VSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKA 311 (456)
T ss_pred CchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccc
Confidence 21 000 0 01235679999999988999999999999999999999999999999999999985321
Q ss_pred -----CCC----CCCCCcccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEe
Q 044624 250 -----FDI----NSEFRANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEV 303 (358)
Q Consensus 250 -----~~~----~~~~~~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l 303 (358)
+.. ..+.+.+|+ |||||++||+++|||||+||+++||+.||+++++.||+|+++
T Consensus 312 ~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l 391 (456)
T PLN02210 312 QNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRM 391 (456)
T ss_pred cchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEE
Confidence 111 112344675 999999999999999999999999999999999867999999
Q ss_pred cccC-CccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcc-CccccCC
Q 044624 304 ARGM-NCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNAFRN-DENLRDL 357 (358)
Q Consensus 304 ~~~~-~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~~~~~~a~~~-gss~~~~ 357 (358)
...+ ++.+++++|+++|+++|.++ +|++||+||++|++.+++|+++ |||++||
T Consensus 392 ~~~~~~~~~~~~~l~~av~~~m~~~-~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l 446 (456)
T PLN02210 392 RNDAVDGELKVEEVERCIEAVTEGP-AAADIRRRAAELKHVARLALAPGGSSARNL 446 (456)
T ss_pred eccccCCcCCHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 6421 24699999999999999887 7889999999999999999999 9999876
No 5
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=3.7e-55 Score=414.86 Aligned_cols=341 Identities=25% Similarity=0.383 Sum_probs=248.0
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhc--C-C---CCC---CeEEEeccCCccCCCCCCCCCCC
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSS--L-P---QSS---PIHFLETPFNIIDHDLPPCTENT 71 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~--~-~---~~~---~~~~~~~p~~~~~~~~~~~~~~~ 71 (358)
++|||++||++||++||+.|+. +|..|||++|+.+...+.+. . . ... .++|..+| +++|.+.+..
T Consensus 12 ~~PfpaqGHi~Pml~lA~~La~-~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p-----dglp~~~~~~ 85 (480)
T PLN02555 12 LVSFPGQGHVNPLLRLGKLLAS-KGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE-----DGWAEDDPRR 85 (480)
T ss_pred EECCcccccHHHHHHHHHHHHh-CCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-----CCCCCCcccc
Confidence 5899999999999999999999 99999999999877655421 0 0 001 23444333 4666543321
Q ss_pred CCCCchHHHHHHHHH-hhchHHHHHHHHHHhhhcCCCCC-cEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhh
Q 044624 72 DSHPFDVVRKLLEAT-LSFKPHFKKLIIDLIDEQNGHKP-LCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSL 149 (358)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~~~~~p-d~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 149 (358)
. ....+...+ ..+.+.++++++.... ++ +| +|||+|.+++|+.++|+++|||++.|++++++.+..+.+.
T Consensus 86 ~-----~~~~~~~~~~~~~~~~l~~~l~~~~~--~~-~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~ 157 (480)
T PLN02555 86 Q-----DLDLYLPQLELVGKREIPNLVKRYAE--QG-RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHY 157 (480)
T ss_pred c-----CHHHHHHHHHHhhhHHHHHHHHHHhc--cC-CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHH
Confidence 1 122333333 3567788888876532 12 44 9999999999999999999999999999999888776654
Q ss_pred hcc-CCCCCCC-C-CccccCCCCC--------Ccc----c--------------C-------------------------
Q 044624 150 WVD-LPHRNTD-S-DEFLLLDFPE--------AST----I--------------H------------------------- 175 (358)
Q Consensus 150 ~~~-~p~~~~~-~-~~~~~p~~~~--------~~~----~--------------~------------------------- 175 (358)
... .+..... . ..+.+|++|. .+. + .
T Consensus 158 ~~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~ 237 (480)
T PLN02555 158 YHGLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLC 237 (480)
T ss_pred hhcCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCC
Confidence 211 1211110 1 1123444431 000 0 0
Q ss_pred cccccCCCCCCCC--C-C---C--CCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCC
Q 044624 176 PVLRFTGSKAGAG--K-E---H--GISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPP 247 (358)
Q Consensus 176 p~~~~~~~~~~~~--~-~---~--~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~ 247 (358)
|+++. ||..... . . . ...+.+|.+|||++++++||||||||+..++.+++.+++.+|+.++++|||+++..
T Consensus 238 ~v~~i-GPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~ 316 (480)
T PLN02555 238 PIKPV-GPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPP 316 (480)
T ss_pred CEEEe-CcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 32222 4432110 0 0 0 12356799999999888999999999999999999999999999999999998742
Q ss_pred C------------CCCCC---CCCCcccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhhhhc
Q 044624 248 I------------GFDIN---SEFRANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGE 295 (358)
Q Consensus 248 ~------------~~~~~---~~~~~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 295 (358)
. ++..+ .+.+.+|+ |||||++||+++|||||+||+++||+.||+++++
T Consensus 317 ~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~ 396 (480)
T PLN02555 317 HKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVD 396 (480)
T ss_pred cccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHH
Confidence 1 11111 12234665 9999999999999999999999999999999999
Q ss_pred cccceEEeccc--CCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcc-CccccCC
Q 044624 296 EVGVCAEVARG--MNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNAFRN-DENLRDL 357 (358)
Q Consensus 296 ~~G~G~~l~~~--~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~~~~~~a~~~-gss~~~~ 357 (358)
.||+|+++... +.+.+++++|+++|+++|+++ +|+++|+||++|+++.++|+++ |||++||
T Consensus 397 ~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~-~g~~~r~ra~~l~~~a~~A~~egGSS~~~l 460 (480)
T PLN02555 397 VFKTGVRLCRGEAENKLITREEVAECLLEATVGE-KAAELKQNALKWKEEAEAAVAEGGSSDRNF 460 (480)
T ss_pred HhCceEEccCCccccCcCcHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999531 124689999999999999887 8999999999999999999999 9999875
No 6
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.6e-55 Score=410.36 Aligned_cols=337 Identities=24% Similarity=0.388 Sum_probs=244.3
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCC-CCCCCCCchHH
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCT-ENTDSHPFDVV 79 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~ 79 (358)
+||||++||++||++||+.|+. +|+.|||++++.+...+..... ++++|+.+| +++|+.. +..+. .
T Consensus 10 ~~P~paqGHi~P~l~lAk~La~-~G~~vT~v~t~~~~~~~~~~~~--~~i~~~~ip-----dglp~~~~~~~~~-----~ 76 (449)
T PLN02173 10 AVPFPSQGHITPIRQFCKRLHS-KGFKTTHTLTTFIFNTIHLDPS--SPISIATIS-----DGYDQGGFSSAGS-----V 76 (449)
T ss_pred EecCcccccHHHHHHHHHHHHc-CCCEEEEEECCchhhhcccCCC--CCEEEEEcC-----CCCCCcccccccC-----H
Confidence 5899999999999999999999 9999999999987665532111 469999887 4676532 22111 2
Q ss_pred HHHHHHH-hhchHHHHHHHHHHhhhcCCCCC-cEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhhcc-----
Q 044624 80 RKLLEAT-LSFKPHFKKLIIDLIDEQNGHKP-LCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLWVD----- 152 (358)
Q Consensus 80 ~~~~~~~-~~~~~~l~~ll~~~~~~~~~~~p-d~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~----- 152 (358)
..+.... ..+.+.+++++++.... + +| +|||+|.+++|+.++|+++|||++.|++++++.+..+++....
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~--~-~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~~~~~ 153 (449)
T PLN02173 77 PEYLQNFKTFGSKTVADIIRKHQST--D-NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINNGSLT 153 (449)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcc--C-CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhccCCcc
Confidence 2344444 46778888888875321 2 45 9999999999999999999999999999887766554432110
Q ss_pred CCCCCCCC-CccccCCC-----CCC--cc------------------------------c---CcccccCCCCCC-----
Q 044624 153 LPHRNTDS-DEFLLLDF-----PEA--ST------------------------------I---HPVLRFTGSKAG----- 186 (358)
Q Consensus 153 ~p~~~~~~-~~~~~p~~-----~~~--~~------------------------------~---~p~~~~~~~~~~----- 186 (358)
.+..+... ....+|.+ +.. +. + .|+++. ||..+
T Consensus 154 ~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~v~~V-GPl~~~~~~~ 232 (449)
T PLN02173 154 LPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKVCPVLTI-GPTVPSMYLD 232 (449)
T ss_pred CCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhcCCeeEE-cccCchhhcc
Confidence 00000000 00001100 000 00 0 023222 44321
Q ss_pred ----CCCC-C---C--CChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCC------CC
Q 044624 187 ----AGKE-H---G--ISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPI------GF 250 (358)
Q Consensus 187 ----~~~~-~---~--~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~------~~ 250 (358)
.... . . ..+..|.+|||.++++|||||||||+..++.+++++++.+| ++.+|+|+++... ++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~~~~lp~~~ 310 (449)
T PLN02173 233 QQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASEESKLPPGF 310 (449)
T ss_pred ccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccchhcccchH
Confidence 0000 0 0 12346999999999999999999999999999999999999 7899999998432 12
Q ss_pred CC----CCCCCcccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccC-C
Q 044624 251 DI----NSEFRANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGM-N 308 (358)
Q Consensus 251 ~~----~~~~~~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~-~ 308 (358)
.. ....+.+|+ |||||++||+++|||||+||+++||+.||+++++.||+|+++...+ +
T Consensus 311 ~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~ 390 (449)
T PLN02173 311 LETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKES 390 (449)
T ss_pred HHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccC
Confidence 11 112334676 9999999999999999999999999999999999999999997522 2
Q ss_pred ccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcc-CccccCC
Q 044624 309 CAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNAFRN-DENLRDL 357 (358)
Q Consensus 309 ~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~~~~~~a~~~-gss~~~~ 357 (358)
+.+++++|+++|+++|+++ +|+++|+||+++++++++|+++ |||++||
T Consensus 391 ~~~~~e~v~~av~~vm~~~-~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l 439 (449)
T PLN02173 391 GIAKREEIEFSIKEVMEGE-KSKEMKENAGKWRDLAVKSLSEGGSTDINI 439 (449)
T ss_pred CcccHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3479999999999999987 7889999999999999999999 9999875
No 7
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=9.3e-55 Score=416.45 Aligned_cols=347 Identities=29% Similarity=0.515 Sum_probs=244.3
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCC------CCCCeEEEeccCCccCCCCCCCCCCCCCC
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLP------QSSPIHFLETPFNIIDHDLPPCTENTDSH 74 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 74 (358)
++|+|++||++||++||+.|++ |||+|||++++.+...+++... ++..+++..++++...+++|++.+.....
T Consensus 10 lvp~pa~GHi~P~L~LAk~L~~-rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~~~~~ 88 (482)
T PLN03007 10 FFPFMAHGHMIPTLDMAKLFSS-RGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCENVDFI 88 (482)
T ss_pred EECCCccccHHHHHHHHHHHHh-CCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccccccc
Confidence 5899999999999999999999 9999999999988866654311 00123455555442223566543322110
Q ss_pred ----C--c-hHHHHHHHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHh
Q 044624 75 ----P--F-DVVRKLLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYY 147 (358)
Q Consensus 75 ----~--~-~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 147 (358)
. . .....+......+.+.+++++++. +|||||+|.+++|+.++|+++|||++.|++++++..+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~ 161 (482)
T PLN03007 89 TSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT-------RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASY 161 (482)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHH
Confidence 0 0 111222223345556666666544 7999999999999999999999999999999877666544
Q ss_pred hhhccCCCCCCC--CCccccCCCCCCcc--------------cC------------------------------------
Q 044624 148 SLWVDLPHRNTD--SDEFLLLDFPEAST--------------IH------------------------------------ 175 (358)
Q Consensus 148 ~~~~~~p~~~~~--~~~~~~p~~~~~~~--------------~~------------------------------------ 175 (358)
....+.+..... .+...+|++|..+. +.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~ 241 (482)
T PLN03007 162 CIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFV 241 (482)
T ss_pred HHHhcccccccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhcc
Confidence 332222211100 01122444431000 00
Q ss_pred --cccccCCCCCC-C---------CCCCCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEE
Q 044624 176 --PVLRFTGSKAG-A---------GKEHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWI 243 (358)
Q Consensus 176 --p~~~~~~~~~~-~---------~~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~ 243 (358)
|+++. ||... . +......+.+|.+|||+++++|||||||||+...+.+++.+++.+|+.++++|||+
T Consensus 242 ~~~~~~V-GPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~ 320 (482)
T PLN03007 242 AKRAWHI-GPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWV 320 (482)
T ss_pred CCCEEEE-ccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 11111 44211 0 00011134679999999988999999999999999999999999999999999999
Q ss_pred ecCCCC-------CCC-------CCC-CCcccc-----------------cCCcchhhhhhcCcceEeccccccchhhhh
Q 044624 244 VRPPIG-------FDI-------NSE-FRANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSN 291 (358)
Q Consensus 244 ~~~~~~-------~~~-------~~~-~~~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 291 (358)
++.+.. +.+ ..+ .+.+|+ |||||++||+++|||||+||+++||+.||+
T Consensus 321 ~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~ 400 (482)
T PLN03007 321 VRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEK 400 (482)
T ss_pred EecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHH
Confidence 985321 111 011 123676 999999999999999999999999999999
Q ss_pred hhhccccceEEeccc-----CCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcc-CccccCC
Q 044624 292 LLGEEVGVCAEVARG-----MNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNAFRN-DENLRDL 357 (358)
Q Consensus 292 ~v~~~~G~G~~l~~~-----~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~~~~~~a~~~-gss~~~~ 357 (358)
++++.|++|+.+... +...+++++|+++|+++|.|+ +|++||+||+++++.+++|+++ |||++||
T Consensus 401 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l 471 (482)
T PLN03007 401 LVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGE-EAEERRLRAKKLAEMAKAAVEEGGSSFNDL 471 (482)
T ss_pred HHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999877888776421 124689999999999999987 8999999999999999999999 9999886
No 8
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=9.3e-55 Score=411.12 Aligned_cols=339 Identities=24% Similarity=0.367 Sum_probs=245.7
Q ss_pred CcccCCCcChHHHHHHHHHHH-hCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHH
Q 044624 1 MLPFMAQGHVIPFLALAHHLE-STKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVV 79 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~-~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
++|||++||++||++||+.|+ + +|++|||++++.+..++.+.....+++++..+|++. .+++++... ...
T Consensus 10 l~P~paqGHi~P~l~LAk~La~~-~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~-~~glp~~~~-------~~~ 80 (481)
T PLN02992 10 MFSSPGMGHVIPVIELGKRLSAN-HGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPD-ISGLVDPSA-------HVV 80 (481)
T ss_pred EeCCcccchHHHHHHHHHHHHhC-CCcEEEEEeCCCchhhhhhccccCCCceEEECCCcc-ccCCCCCCc-------cHH
Confidence 589999999999999999998 8 899999999998776553321111468999888652 234432110 011
Q ss_pred HHHHHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhhcc-CCCCC-
Q 044624 80 RKLLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLWVD-LPHRN- 157 (358)
Q Consensus 80 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~-~p~~~- 157 (358)
..+......+.+.+++++++.. . +|+|||+|.+++|+.++|+++|||++.|++++++.++.+.+.+.+ .+...
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~----~-~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~ 155 (481)
T PLN02992 81 TKIGVIMREAVPTLRSKIAEMH----Q-KPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEE 155 (481)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC----C-CCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccc
Confidence 2222333566788888887641 2 689999999999999999999999999999988776655433211 00000
Q ss_pred --CCCCccccCCCCC----Ccc----------c-------------------------------------------Cccc
Q 044624 158 --TDSDEFLLLDFPE----AST----------I-------------------------------------------HPVL 178 (358)
Q Consensus 158 --~~~~~~~~p~~~~----~~~----------~-------------------------------------------~p~~ 178 (358)
...+...+|+++. .+. + .|++
T Consensus 156 ~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~ 235 (481)
T PLN02992 156 HTVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVY 235 (481)
T ss_pred cccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceE
Confidence 0001122333321 000 0 0111
Q ss_pred ccCCCCCCCCCCCCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCC---------
Q 044624 179 RFTGSKAGAGKEHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIG--------- 249 (358)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~--------- 249 (358)
+. ||..... .....+.+|.+|||++++++||||||||+..++.+++++++.+|+.++++|||+++++..
T Consensus 236 ~V-GPl~~~~-~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~ 313 (481)
T PLN02992 236 PI-GPLCRPI-QSSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFS 313 (481)
T ss_pred Ee-cCccCCc-CCCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCccccccccccc
Confidence 11 4432110 011235679999999988999999999999999999999999999999999999974210
Q ss_pred ---------CCC-CC----------CCC-cccc-----------------cCCcchhhhhhcCcceEeccccccchhhhh
Q 044624 250 ---------FDI-NS----------EFR-ANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSN 291 (358)
Q Consensus 250 ---------~~~-~~----------~~~-~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 291 (358)
... .+ +.+ .+|+ |||||++||+++|||||+||+++||+.||+
T Consensus 314 ~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~ 393 (481)
T PLN02992 314 ANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAA 393 (481)
T ss_pred CcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHH
Confidence 000 00 112 2675 999999999999999999999999999999
Q ss_pred hhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhh--cc-CccccCC
Q 044624 292 LLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNAF--RN-DENLRDL 357 (358)
Q Consensus 292 ~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~~~~~~a~--~~-gss~~~~ 357 (358)
++++.||+|++++.. ++.+++++|+++|+++|+++ +|++||++|+++++++++|+ .+ |||++||
T Consensus 394 ~~~~~~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~-~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l 460 (481)
T PLN02992 394 LLSDELGIAVRSDDP-KEVISRSKIEALVRKVMVEE-EGEEMRRKVKKLRDTAEMSLSIDGGGVAHESL 460 (481)
T ss_pred HHHHHhCeeEEecCC-CCcccHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 997667999999741 13589999999999999988 88999999999999999999 46 9998875
No 9
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=4.2e-54 Score=403.29 Aligned_cols=340 Identities=24% Similarity=0.311 Sum_probs=242.5
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCC--eEEEeccCCccCCCCCCCCCCCCCCCchH
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSP--IHFLETPFNIIDHDLPPCTENTDSHPFDV 78 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
++|||++||++||++||+.|+. +|+.|||++++.+...+.+......+ +++..+|.+ +++|++.+...+.+...
T Consensus 10 l~P~paqGHi~P~l~LAk~La~-~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~---~glp~g~e~~~~~~~~~ 85 (453)
T PLN02764 10 MYPWFATGHMTPFLFLANKLAE-KGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHV---DGLPVGTETVSEIPVTS 85 (453)
T ss_pred EECCcccccHHHHHHHHHHHHh-CCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCc---CCCCCcccccccCChhH
Confidence 5899999999999999999999 99999999999887665542100013 555555532 57776544433333222
Q ss_pred HHHHHHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhhccC--CCC
Q 044624 79 VRKLLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLWVDL--PHR 156 (358)
Q Consensus 79 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~--p~~ 156 (358)
...+......+.+.+.+++++. +|+|||+|. ++|+.++|+++|||++.|++++++.+..+....... +..
T Consensus 86 ~~~~~~a~~~~~~~~~~~l~~~-------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~p 157 (453)
T PLN02764 86 ADLLMSAMDLTRDQVEVVVRAV-------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLVPGGELGVPPP 157 (453)
T ss_pred HHHHHHHHHHhHHHHHHHHHhC-------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhcccccCCCCCC
Confidence 2334444456778888888876 789999995 899999999999999999999988777664311110 000
Q ss_pred CCCC-----CccccCCC----CCC----c-----------c--------------------c-----CcccccCCCCCCC
Q 044624 157 NTDS-----DEFLLLDF----PEA----S-----------T--------------------I-----HPVLRFTGSKAGA 187 (358)
Q Consensus 157 ~~~~-----~~~~~p~~----~~~----~-----------~--------------------~-----~p~~~~~~~~~~~ 187 (358)
+.+. ....+|.+ +.. . . + .|+++. ||....
T Consensus 158 glp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~V-GPL~~~ 236 (453)
T PLN02764 158 GYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLT-GPVFPE 236 (453)
T ss_pred CCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEe-ccCccC
Confidence 1100 00000000 000 0 0 0 022222 444211
Q ss_pred CCCCCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCC-----------CCCCCC--
Q 044624 188 GKEHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPI-----------GFDINS-- 254 (358)
Q Consensus 188 ~~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~-----------~~~~~~-- 254 (358)
.......+.+|.+|||+++++|||||||||+..++.+|+.+++.+|+.++++|+|+++++. ++..+.
T Consensus 237 ~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~g 316 (453)
T PLN02764 237 PDKTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKG 316 (453)
T ss_pred ccccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhcc
Confidence 1001123568999999999999999999999999999999999999999999999999532 111111
Q ss_pred -CCC-cccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHH
Q 044624 255 -EFR-ANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEH 315 (358)
Q Consensus 255 -~~~-~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~ 315 (358)
+.+ .+|+ |||||++||+++|||||+||+++||+.||+++++.||+|+.+...+.+.+++++
T Consensus 317 rG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~ 396 (453)
T PLN02764 317 RGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKES 396 (453)
T ss_pred CCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHH
Confidence 112 2676 999999999999999999999999999999998878999998642113689999
Q ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHhhcc-CccccCC
Q 044624 316 IVVKIELVMNET-EKGKPMRMKDLEVKEIIDNAFRN-DENLRDL 357 (358)
Q Consensus 316 l~~ai~~ll~~~-~~~~~~r~~a~~l~~~~~~a~~~-gss~~~~ 357 (358)
|+++|+++|+++ ++|+++|++|+++++.++ + |||++||
T Consensus 397 i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l 436 (453)
T PLN02764 397 LRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYV 436 (453)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHH
Confidence 999999999875 268889999999998873 4 8998775
No 10
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=4.1e-54 Score=405.19 Aligned_cols=343 Identities=23% Similarity=0.330 Sum_probs=242.9
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcc-hhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHH
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLN-IKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVV 79 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
++|||++||++||++||+.|++++|+.|||++++.+ ...+.+.....++++|+.++ ++++.+.+.... ...
T Consensus 8 ~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~-----dglp~g~~~~~~---~~~ 79 (455)
T PLN02152 8 LVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFS-----DGFDDGVISNTD---DVQ 79 (455)
T ss_pred EecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcC-----CCCCCccccccc---cHH
Confidence 589999999999999999999416999999999854 22222111111368888776 466654321111 111
Q ss_pred HHHHHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhhcc------C
Q 044624 80 RKLLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLWVD------L 153 (358)
Q Consensus 80 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~------~ 153 (358)
..+......+.+.+++++++... .+.+++|||+|.+++|+.++|+++|||++.|++++++.+..+++.... +
T Consensus 80 ~~~~~~~~~~~~~l~~~l~~l~~--~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~~~i 157 (455)
T PLN02152 80 NRLVNFERNGDKALSDFIEANLN--GDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGNNSVFEF 157 (455)
T ss_pred HHHHHHHHhccHHHHHHHHHhhc--cCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccCCCeeec
Confidence 22333345667888888887531 121359999999999999999999999999999999887776554210 1
Q ss_pred CCCCCCCCccccCCC--C---CC--------------------cc--------------c--CcccccCCCCCCC----C
Q 044624 154 PHRNTDSDEFLLLDF--P---EA--------------------ST--------------I--HPVLRFTGSKAGA----G 188 (358)
Q Consensus 154 p~~~~~~~~~~~p~~--~---~~--------------------~~--------------~--~p~~~~~~~~~~~----~ 188 (358)
|.... .....+|.+ + .. +- + .|+++. ||.... .
T Consensus 158 Pglp~-l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~v~~V-GPL~~~~~~~~ 235 (455)
T PLN02152 158 PNLPS-LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNIEMVAV-GPLLPAEIFTG 235 (455)
T ss_pred CCCCC-CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcCCEEEE-cccCccccccc
Confidence 11000 000001100 0 00 00 0 033332 443211 0
Q ss_pred CC--C----CCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCC--------------
Q 044624 189 KE--H----GISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPI-------------- 248 (358)
Q Consensus 189 ~~--~----~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~-------------- 248 (358)
.. . ...+.+|.+|||++++++||||||||+..++.+++++++.+|+.++++|||+++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~ 315 (455)
T PLN02152 236 SESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEI 315 (455)
T ss_pred cccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCccccccccccccccc
Confidence 00 0 122457999999998899999999999999999999999999999999999998521
Q ss_pred ----CCCC---CCCCCcccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEec
Q 044624 249 ----GFDI---NSEFRANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVA 304 (358)
Q Consensus 249 ----~~~~---~~~~~~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 304 (358)
++.+ ..+.+.+|+ |||||++||+++|||||++|+++||+.||+++++.||+|+.+.
T Consensus 316 ~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~ 395 (455)
T PLN02152 316 EKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVR 395 (455)
T ss_pred ccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEee
Confidence 1100 112334676 9999999999999999999999999999999999888888886
Q ss_pred ccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcc-CccccCC
Q 044624 305 RGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNAFRN-DENLRDL 357 (358)
Q Consensus 305 ~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~~~~~~a~~~-gss~~~~ 357 (358)
.+..+.+++++|+++|+++|+|+ +++||+||++|++++++|+++ |||++||
T Consensus 396 ~~~~~~~~~e~l~~av~~vm~~~--~~~~r~~a~~~~~~~~~a~~~ggsS~~nl 447 (455)
T PLN02152 396 ENSEGLVERGEIRRCLEAVMEEK--SVELRESAEKWKRLAIEAGGEGGSSDKNV 447 (455)
T ss_pred cCcCCcCcHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 42234579999999999999754 557999999999999999999 9999875
No 11
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=4.2e-54 Score=405.17 Aligned_cols=342 Identities=25% Similarity=0.286 Sum_probs=241.9
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHH
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVR 80 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
+||||++||++||++||+.|++ +||+|||+|++.+...+.+......++++..++++ ..+++|++.+..+........
T Consensus 9 ~~P~paqGHi~P~l~LAk~La~-~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p-~~dgLp~g~~~~~~l~~~l~~ 86 (442)
T PLN02208 9 MFPWFAFGHMIPFLHLANKLAE-KGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIP-PVNGLPAGAETTSDIPISMDN 86 (442)
T ss_pred EecCccccHHHHHHHHHHHHHh-CCCEEEEEeccchhhhhhcccCCCCceEEEEeCCC-CccCCCCCcccccchhHHHHH
Confidence 5899999999999999999999 99999999999887776553211135777776653 124666554322221111112
Q ss_pred HHHHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhh-cc--CCCCC
Q 044624 81 KLLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLW-VD--LPHRN 157 (358)
Q Consensus 81 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~-~~--~p~~~ 157 (358)
.+......+.+.+++++++. ++||||+| ++.|+.++|+++|||++.|++++++.+. +.+.. .. .+..+
T Consensus 87 ~~~~~~~~~~~~l~~~L~~~-------~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~~~~~~~pg 157 (442)
T PLN02208 87 LLSEALDLTRDQVEAAVRAL-------RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGGKLGVPPPG 157 (442)
T ss_pred HHHHHHHHHHHHHHHHHhhC-------CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCccccCCCCCC
Confidence 22233456777888888776 78999999 5889999999999999999999887654 33321 11 01011
Q ss_pred CCC-----CccccCCCCC--C-c---------cc-----------------------Cc----ccccCCCCCCCCCCCCC
Q 044624 158 TDS-----DEFLLLDFPE--A-S---------TI-----------------------HP----VLRFTGSKAGAGKEHGI 193 (358)
Q Consensus 158 ~~~-----~~~~~p~~~~--~-~---------~~-----------------------~p----~~~~~~~~~~~~~~~~~ 193 (358)
.+. ....+|.+.. . + .. +| +++. |+..........
T Consensus 158 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~v-Gpl~~~~~~~~~ 236 (442)
T PLN02208 158 YPSSKVLFRENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLT-GPMFPEPDTSKP 236 (442)
T ss_pred CCCcccccCHHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEE-eecccCcCCCCC
Confidence 100 0001111100 0 0 00 02 2222 443221111123
Q ss_pred ChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCC-------CC----CC---CCC-Cc
Q 044624 194 SAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIG-------FD----IN---SEF-RA 258 (358)
Q Consensus 194 ~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~-------~~----~~---~~~-~~ 258 (358)
.+.+|.+|||++++++||||||||+..++.+++.+++.+|+.++.+|+|+++.+.+ +. .+ .+. +.
T Consensus 237 ~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~ 316 (442)
T PLN02208 237 LEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWG 316 (442)
T ss_pred CHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEee
Confidence 56789999999998999999999999999999999999999999999999985411 11 00 111 22
Q ss_pred ccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHH
Q 044624 259 NDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIE 321 (358)
Q Consensus 259 ~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 321 (358)
+|+ |||||++||+++|||||+||+++||+.||+++++.||+|++++..+++.+++++|+++|+
T Consensus 317 ~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~ 396 (442)
T PLN02208 317 GWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIK 396 (442)
T ss_pred ccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHH
Confidence 676 999999999999999999999999999999998878999999762223499999999999
Q ss_pred HHhcCCC-CCHHHHHHHHHHHHHHHHhhccCccccCC
Q 044624 322 LVMNETE-KGKPMRMKDLEVKEIIDNAFRNDENLRDL 357 (358)
Q Consensus 322 ~ll~~~~-~~~~~r~~a~~l~~~~~~a~~~gss~~~~ 357 (358)
++|++++ +|+++|++|+++++.+++ + |||++||
T Consensus 397 ~~m~~~~e~g~~~r~~~~~~~~~~~~--~-gsS~~~l 430 (442)
T PLN02208 397 SVMDKDSDLGKLVRSNHTKLKEILVS--P-GLLTGYV 430 (442)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHhc--C-CcHHHHH
Confidence 9998762 688999999999998732 2 9998875
No 12
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-53 Score=402.78 Aligned_cols=333 Identities=23% Similarity=0.300 Sum_probs=236.5
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHH
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVR 80 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
++|||++||++||++||+.|++ +|++|||+|++.+...+++......+++|..++++ ..+++|++.+...+.......
T Consensus 9 lvPfpaqGHi~PmL~LAk~Las-~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP-~~dGLP~g~e~~~~l~~~~~~ 86 (446)
T PLN00414 9 MYPWFGFGHMIPYLHLANKLAE-KGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLP-PVDGLPFGAETASDLPNSTKK 86 (446)
T ss_pred EecCcccchHHHHHHHHHHHHh-CCCEEEEEeCCchhhhhcccccCCCceEEEEecCC-CcCCCCCcccccccchhhHHH
Confidence 5899999999999999999999 99999999999887766543211135888766654 235777654333222211112
Q ss_pred HHHHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhhcc--CCCCCC
Q 044624 81 KLLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLWVD--LPHRNT 158 (358)
Q Consensus 81 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~--~p~~~~ 158 (358)
.+......+.+.++++++.. +|||||+|. ++|+.++|+++|||++.|++++++.++.+.+.... .+..+.
T Consensus 87 ~~~~a~~~l~~~l~~~L~~~-------~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~~~~~~pg~ 158 (446)
T PLN00414 87 PIFDAMDLLRDQIEAKVRAL-------KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAELGFPPPDY 158 (446)
T ss_pred HHHHHHHHHHHHHHHHHhcC-------CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhhcCCCCCCC
Confidence 23333455667777777654 789999995 89999999999999999999998877766542110 000000
Q ss_pred CC-------CccccCCCC-CC----------cc--------------------c-----CcccccCCCCCCCCCC--CCC
Q 044624 159 DS-------DEFLLLDFP-EA----------ST--------------------I-----HPVLRFTGSKAGAGKE--HGI 193 (358)
Q Consensus 159 ~~-------~~~~~p~~~-~~----------~~--------------------~-----~p~~~~~~~~~~~~~~--~~~ 193 (358)
+. ....++.+. .. +. + .|+++. ||....... ...
T Consensus 159 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~V-GPl~~~~~~~~~~~ 237 (446)
T PLN00414 159 PLSKVALRGHDANVCSLFANSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLT-GPMLPEPQNKSGKP 237 (446)
T ss_pred CCCcCcCchhhcccchhhcccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEE-cccCCCcccccCcc
Confidence 00 000000000 00 00 0 023322 554311111 112
Q ss_pred ChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCC-----------CCCCC---CCC-c
Q 044624 194 SAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIG-----------FDINS---EFR-A 258 (358)
Q Consensus 194 ~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~-----------~~~~~---~~~-~ 258 (358)
...+|.+|||+++++|||||||||....+.+++.+++.+|+.+|++|+|+++.+.+ +..+. +.+ .
T Consensus 238 ~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~ 317 (446)
T PLN00414 238 LEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWE 317 (446)
T ss_pred cHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEe
Confidence 24579999999999999999999999999999999999999999999999986421 11111 112 2
Q ss_pred ccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHH
Q 044624 259 NDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIE 321 (358)
Q Consensus 259 ~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 321 (358)
+|+ ||||||+||+++|||||+||+++||+.||+++++.||+|++++.++++.+++++|+++++
T Consensus 318 ~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~ 397 (446)
T PLN00414 318 GWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVK 397 (446)
T ss_pred ccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHH
Confidence 675 999999999999999999999999999999998878999999752223599999999999
Q ss_pred HHhcCCC-CCHHHHHHHHHHHHHH
Q 044624 322 LVMNETE-KGKPMRMKDLEVKEII 344 (358)
Q Consensus 322 ~ll~~~~-~~~~~r~~a~~l~~~~ 344 (358)
++|.+++ ++++||++|+++++.+
T Consensus 398 ~~m~~~~e~g~~~r~~a~~~~~~~ 421 (446)
T PLN00414 398 SVMDKDSEIGNLVKRNHKKLKETL 421 (446)
T ss_pred HHhcCChhhHHHHHHHHHHHHHHH
Confidence 9998752 6888999999999885
No 13
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.1e-53 Score=400.44 Aligned_cols=337 Identities=25% Similarity=0.384 Sum_probs=242.5
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCC-CCCeEEEeccCCccCCCCCCCCCCCCCCCchHH
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQ-SSPIHFLETPFNIIDHDLPPCTENTDSHPFDVV 79 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
++|||++||++||++||+.|+. ||+.|||++++.+..++.+.... ..+++++.+|++ +.+++|++.+...+......
T Consensus 11 l~P~paqGHi~P~l~LAk~La~-~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p-~~dglp~~~~~~~~~~~~~~ 88 (472)
T PLN02670 11 MFPWLAMGHLIPFLRLSKLLAQ-KGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLP-SVPGLPSSAESSTDVPYTKQ 88 (472)
T ss_pred EeCChhhhHHHHHHHHHHHHHh-CCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCC-ccCCCCCCcccccccchhhH
Confidence 5899999999999999999999 99999999999887666532111 146999999876 33577765443322221111
Q ss_pred HHHHHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhhccCCCCC--
Q 044624 80 RKLLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLWVDLPHRN-- 157 (358)
Q Consensus 80 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~-- 157 (358)
..+......+.+.+++++++. +++|||+|.+++|+.++|+++|||++.|++++++.++.+.+...+.....
T Consensus 89 ~~~~~~~~~~~~~~~~~l~~~-------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~ 161 (472)
T PLN02670 89 QLLKKAFDLLEPPLTTFLETS-------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLR 161 (472)
T ss_pred HHHHHHHHHhHHHHHHHHHhC-------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCC
Confidence 122233456778888888776 78999999999999999999999999999998877766543311100000
Q ss_pred CCCCcc-ccCCC--------------CCCcc--------------------------------------------c-Ccc
Q 044624 158 TDSDEF-LLLDF--------------PEAST--------------------------------------------I-HPV 177 (358)
Q Consensus 158 ~~~~~~-~~p~~--------------~~~~~--------------------------------------------~-~p~ 177 (358)
...+.. .+|++ |..+. + .|+
T Consensus 162 ~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~~v 241 (472)
T PLN02670 162 STAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYRKPI 241 (472)
T ss_pred CccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhCCCe
Confidence 000000 01111 00000 0 023
Q ss_pred cccCCCCCCC--C-CC-CC---CChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 044624 178 LRFTGSKAGA--G-KE-HG---ISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIGF 250 (358)
Q Consensus 178 ~~~~~~~~~~--~-~~-~~---~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~ 250 (358)
++. ||.... . .. .. ..+.+|.+|||++++++||||||||+..++.+++++++.+|+.++++|||+++.+.+.
T Consensus 242 ~~V-GPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~ 320 (472)
T PLN02670 242 IPI-GFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGT 320 (472)
T ss_pred EEE-ecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccc
Confidence 333 443211 0 00 10 1136799999999889999999999999999999999999999999999999863211
Q ss_pred --------C----CC---CCCC-cccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhhhhccc
Q 044624 251 --------D----IN---SEFR-ANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEV 297 (358)
Q Consensus 251 --------~----~~---~~~~-~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~ 297 (358)
. .+ .+.+ .+|+ |||||++||+++|||||+||+++||+.||+++++ +
T Consensus 321 ~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~-~ 399 (472)
T PLN02670 321 TQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHG-K 399 (472)
T ss_pred ccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHH-c
Confidence 0 00 0122 3676 9999999999999999999999999999999976 5
Q ss_pred cceEEecccC-CccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhc
Q 044624 298 GVCAEVARGM-NCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNAFR 349 (358)
Q Consensus 298 G~G~~l~~~~-~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~~~~~~a~~ 349 (358)
|+|++++..+ ++.+++++|+++|+++|.|+ +|++||+||+++++++++...
T Consensus 400 g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~-~g~~~r~~a~~l~~~~~~~~~ 451 (472)
T PLN02670 400 KLGLEVPRDERDGSFTSDSVAESVRLAMVDD-AGEEIRDKAKEMRNLFGDMDR 451 (472)
T ss_pred CeeEEeeccccCCcCcHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHhCcch
Confidence 9999997522 24589999999999999987 888999999999999987543
No 14
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3.7e-53 Score=398.25 Aligned_cols=340 Identities=23% Similarity=0.375 Sum_probs=239.0
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCC--cEEEE--EeCCcchhhhh----hcCCCCCCeEEEeccCCccCCCCCCCCCCCC
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKN--YTIAF--VNTHLNIKKIK----SSLPQSSPIHFLETPFNIIDHDLPPCTENTD 72 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rG--h~Vt~--~t~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 72 (358)
++|||++||++||++||+.|+. +| +.||+ ++++.+...+. ......++++|+.+|.. .+.+.... .
T Consensus 8 l~P~p~qGHi~P~l~LA~~La~-~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~~~~~~~~--~ 81 (451)
T PLN03004 8 LYPAPPIGHLVSMVELGKTILS-KNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAV---TPYSSSST--S 81 (451)
T ss_pred EeCCcccchHHHHHHHHHHHHh-CCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCC---CCCCCccc--c
Confidence 5899999999999999999999 98 45555 55544332221 11100146999988843 11111111 1
Q ss_pred CCCchHHHHHHHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhhcc
Q 044624 73 SHPFDVVRKLLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLWVD 152 (358)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 152 (358)
. ......+......+.+.+.++++++.. +.+++|||+|.+++|+.++|+++|||++.|++++++.++.+.+.+..
T Consensus 82 ~--~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~ 156 (451)
T PLN03004 82 R--HHHESLLLEILCFSNPSVHRTLFSLSR---NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTI 156 (451)
T ss_pred c--cCHHHHHHHHHHhhhHHHHHHHHhcCC---CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhc
Confidence 1 111122333335667778888876521 21359999999999999999999999999999999888777654211
Q ss_pred ---CCCCCCC-CCccccCCCCC--------Ccc------cC--------------------------------------c
Q 044624 153 ---LPHRNTD-SDEFLLLDFPE--------AST------IH--------------------------------------P 176 (358)
Q Consensus 153 ---~p~~~~~-~~~~~~p~~~~--------~~~------~~--------------------------------------p 176 (358)
.+..... .....+|++|. .+. +. |
T Consensus 157 ~~~~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~ 236 (451)
T PLN03004 157 DETTPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCFRN 236 (451)
T ss_pred cccccccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCC
Confidence 1110000 01123444432 010 00 1
Q ss_pred ccccCCCCCCCCC-C--CCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCC----
Q 044624 177 VLRFTGSKAGAGK-E--HGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIG---- 249 (358)
Q Consensus 177 ~~~~~~~~~~~~~-~--~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~---- 249 (358)
+++. ||...... . ....+.+|.+|||++++++||||||||+..++.+++++++.||+.++++|||+++.+..
T Consensus 237 v~~v-GPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~ 315 (451)
T PLN03004 237 IYPI-GPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKT 315 (451)
T ss_pred EEEE-eeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccc
Confidence 2222 55431110 0 11123569999999999999999999999999999999999999999999999995310
Q ss_pred ---CC--------CC---CCC-Ccccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhhhhccc
Q 044624 250 ---FD--------IN---SEF-RANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEV 297 (358)
Q Consensus 250 ---~~--------~~---~~~-~~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~ 297 (358)
.. ++ .+. +.+|+ |||||++||+++|||||+||+++||+.||+++++.|
T Consensus 316 ~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~ 395 (451)
T PLN03004 316 ELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEI 395 (451)
T ss_pred ccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHh
Confidence 11 00 111 23676 999999999999999999999999999999999888
Q ss_pred cceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcc-CccccC
Q 044624 298 GVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNAFRN-DENLRD 356 (358)
Q Consensus 298 G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~~~~~~a~~~-gss~~~ 356 (358)
|+|++++.++.+.+++++|+++|+++|+|+ +||+||+++++..+.|+++ |||+++
T Consensus 396 g~g~~l~~~~~~~~~~e~l~~av~~vm~~~----~~r~~a~~~~~~a~~Av~~GGSS~~~ 451 (451)
T PLN03004 396 KIAISMNESETGFVSSTEVEKRVQEIIGEC----PVRERTMAMKNAAELALTETGSSHTA 451 (451)
T ss_pred CceEEecCCcCCccCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 999999752223689999999999999998 9999999999999999999 999864
No 15
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.2e-53 Score=399.54 Aligned_cols=341 Identities=26% Similarity=0.397 Sum_probs=245.3
Q ss_pred CcccCCCcChHHHHHHHHHHHhCC-CcEEEEEeCCcchhhhh--hcCC---CCCCeEEEeccCCccCCCCCCCCCCCCCC
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTK-NYTIAFVNTHLNIKKIK--SSLP---QSSPIHFLETPFNIIDHDLPPCTENTDSH 74 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~r-Gh~Vt~~t~~~~~~~~~--~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 74 (358)
++|||++||++||++||+.|++ + |..|||++++.....+. .... ...+++++.+|++. .+++++. +.
T Consensus 8 l~P~p~qGHi~P~l~LAk~La~-~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-~~~l~~~----~~- 80 (470)
T PLN03015 8 LVASPGLGHLIPILELGNRLSS-VLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVD-VDNLVEP----DA- 80 (470)
T ss_pred EECCcccccHHHHHHHHHHHHh-CCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCc-cccCCCC----Cc-
Confidence 5899999999999999999998 7 99999999886554331 1010 00268999888542 1233110 01
Q ss_pred CchHHHHHHHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCc-eEEEcchhHHHHHHHhhhhcc-
Q 044624 75 PFDVVRKLLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIF-HAIFIEGGGFGFACYYSLWVD- 152 (358)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~- 152 (358)
.....+......+.+.+++++++.. . +++|||+|.+++|+.++|+++||| ++.|++++++.+..+.+++..
T Consensus 81 --~~~~~~~~~~~~~~~~~~~~l~~l~----~-~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~ 153 (470)
T PLN03015 81 --TIFTKMVVKMRAMKPAVRDAVKSMK----R-KPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLD 153 (470)
T ss_pred --cHHHHHHHHHHhchHHHHHHHHhcC----C-CCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhh
Confidence 1223344455677888999988752 2 679999999999999999999999 588888887766555443211
Q ss_pred --CCCCCCC-CCccccCCCCCC--------c--c----cC--------------------------------c-------
Q 044624 153 --LPHRNTD-SDEFLLLDFPEA--------S--T----IH--------------------------------P------- 176 (358)
Q Consensus 153 --~p~~~~~-~~~~~~p~~~~~--------~--~----~~--------------------------------p------- 176 (358)
.+..... .+.+.+|++|.. + . +. .
T Consensus 154 ~~~~~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~ 233 (470)
T PLN03015 154 TVVEGEYVDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRV 233 (470)
T ss_pred cccccccCCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccc
Confidence 1110000 111334554320 0 0 00 1
Q ss_pred ----ccccCCCCCCCCCCCCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCC---
Q 044624 177 ----VLRFTGSKAGAGKEHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIG--- 249 (358)
Q Consensus 177 ----~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~--- 249 (358)
+++. ||....+ .....+.+|.+|||+++++|||||||||...++.+++++++.+|+.++++|||+++.+..
T Consensus 234 ~~~~v~~V-GPl~~~~-~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~ 311 (470)
T PLN03015 234 MKVPVYPI-GPIVRTN-VHVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLG 311 (470)
T ss_pred cCCceEEe-cCCCCCc-ccccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccc
Confidence 1111 4443211 111234579999999999999999999999999999999999999999999999974210
Q ss_pred --------CC--------CCC---CC-Ccccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhh
Q 044624 250 --------FD--------INS---EF-RANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNL 292 (358)
Q Consensus 250 --------~~--------~~~---~~-~~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 292 (358)
.. ++. +. +..|+ |||||++||+++|||||+||+++||+.||++
T Consensus 312 ~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~ 391 (470)
T PLN03015 312 ASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATL 391 (470)
T ss_pred cccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHH
Confidence 10 000 11 23676 9999999999999999999999999999999
Q ss_pred hhccccceEEecc-cCCccccHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHhhcc-CccccCC
Q 044624 293 LGEEVGVCAEVAR-GMNCAVLKEHIVVKIELVMNE-TEKGKPMRMKDLEVKEIIDNAFRN-DENLRDL 357 (358)
Q Consensus 293 v~~~~G~G~~l~~-~~~~~~~~~~l~~ai~~ll~~-~~~~~~~r~~a~~l~~~~~~a~~~-gss~~~~ 357 (358)
+++.||+|+++.. .+.+.+++++|+++|+++|.+ .+||+++|+||++|++..++|+++ |||++||
T Consensus 392 ~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl 459 (470)
T PLN03015 392 LTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSL 459 (470)
T ss_pred HHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 9889999999952 112479999999999999963 227899999999999999999999 9999886
No 16
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.7e-53 Score=404.42 Aligned_cols=339 Identities=26% Similarity=0.348 Sum_probs=246.9
Q ss_pred CcccCCCcChHHHHHHHHHHHhCC--CcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchH
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTK--NYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDV 78 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~r--Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
++|||++||++||++||++|++ | ||+|||++++.+...+++... ..+++|+.+|. +++...+...+
T Consensus 15 lvp~pa~GHi~P~l~LA~~L~~-~~~G~~VT~~~t~~~~~~i~~~~~-~~gi~fv~lp~-----~~p~~~~~~~~----- 82 (459)
T PLN02448 15 AMPYPGRGHINPMMNLCKLLAS-RKPDILITFVVTEEWLGLIGSDPK-PDNIRFATIPN-----VIPSELVRAAD----- 82 (459)
T ss_pred EECCcccccHHHHHHHHHHHHc-CCCCcEEEEEeCCchHhHhhccCC-CCCEEEEECCC-----CCCCccccccC-----
Confidence 5899999999999999999999 9 999999999998877765321 14799998872 33432211111
Q ss_pred HHHHHHHH-hhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhhccC----
Q 044624 79 VRKLLEAT-LSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLWVDL---- 153 (358)
Q Consensus 79 ~~~~~~~~-~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~---- 153 (358)
...+.... ..+.+.+++++++.. . ++||||+|.++.|+..+|+++|||++.|+++++..+..+.+.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~----~-~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~ 157 (459)
T PLN02448 83 FPGFLEAVMTKMEAPFEQLLDRLE----P-PVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGH 157 (459)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcC----C-CcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccC
Confidence 12223332 456777888887652 1 6799999999999999999999999999999987666554432110
Q ss_pred -CCCCCC-CCc--cccCCCCC--------Cc-----c-cC-------------------------------------ccc
Q 044624 154 -PHRNTD-SDE--FLLLDFPE--------AS-----T-IH-------------------------------------PVL 178 (358)
Q Consensus 154 -p~~~~~-~~~--~~~p~~~~--------~~-----~-~~-------------------------------------p~~ 178 (358)
+..... .+. ..+|+++. .+ . +. |++
T Consensus 158 ~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~ 237 (459)
T PLN02448 158 FPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVY 237 (459)
T ss_pred CCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceE
Confidence 111000 000 01332211 00 0 00 111
Q ss_pred ccCCCCCCC---C--CC--CC-CChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCC-C
Q 044624 179 RFTGSKAGA---G--KE--HG-ISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPI-G 249 (358)
Q Consensus 179 ~~~~~~~~~---~--~~--~~-~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~-~ 249 (358)
+ +||.... . .. .. ..+.+|..||+.+++++||||||||+...+.+++++++++|+.++++|||+++... +
T Consensus 238 ~-iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~~ 316 (459)
T PLN02448 238 P-IGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEASR 316 (459)
T ss_pred E-ecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCchhh
Confidence 1 1332210 0 00 01 12347999999998899999999999988999999999999999999999987542 2
Q ss_pred CCCC---CCCCcccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEeccc--C
Q 044624 250 FDIN---SEFRANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARG--M 307 (358)
Q Consensus 250 ~~~~---~~~~~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~--~ 307 (358)
+.+. ...+.+|+ |||||++||+++|||||+||+++||+.||+++++.||+|+.+... +
T Consensus 317 ~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~ 396 (459)
T PLN02448 317 LKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGE 396 (459)
T ss_pred HhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEeccccc
Confidence 3221 22344665 999999999999999999999999999999999988999999641 1
Q ss_pred CccccHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHhhcc-CccccCC
Q 044624 308 NCAVLKEHIVVKIELVMNET-EKGKPMRMKDLEVKEIIDNAFRN-DENLRDL 357 (358)
Q Consensus 308 ~~~~~~~~l~~ai~~ll~~~-~~~~~~r~~a~~l~~~~~~a~~~-gss~~~~ 357 (358)
.+.+++++|+++|+++|+|+ ++|++||+||++|++++++|+++ |||++||
T Consensus 397 ~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l 448 (459)
T PLN02448 397 ETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNL 448 (459)
T ss_pred CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 23689999999999999874 37889999999999999999999 9999886
No 17
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=5.7e-53 Score=402.28 Aligned_cols=337 Identities=22% Similarity=0.341 Sum_probs=242.8
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCC----cEEEEEeCCcchh----hhhhcC----CCCCCeEEEeccCCccCCCCCCCC
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKN----YTIAFVNTHLNIK----KIKSSL----PQSSPIHFLETPFNIIDHDLPPCT 68 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rG----h~Vt~~t~~~~~~----~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~~ 68 (358)
++|||++||++||++||+.|+. +| +.|||++++.+.. .+.+.. ....+++|+.+|.. .++++.
T Consensus 8 lvPfpaqGHi~P~l~LAk~La~-~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~----~~p~~~ 82 (480)
T PLN00164 8 LLPVWGSGHLMSMLEAGKRLLA-SSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAV----EPPTDA 82 (480)
T ss_pred EeCCcchhHHHHHHHHHHHHHh-CCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCC----CCCCcc
Confidence 5899999999999999999999 86 8999999876422 232211 10125899988843 122221
Q ss_pred CCCCCCCchHHHHHHH-HHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHh
Q 044624 69 ENTDSHPFDVVRKLLE-ATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYY 147 (358)
Q Consensus 69 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 147 (358)
+. ...+.. ....+.+.+++++++.. . +++|||+|.+++|+.++|+++|||++.|++++++.+..+.
T Consensus 83 e~--------~~~~~~~~~~~~~~~l~~~L~~l~----~-pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~ 149 (480)
T PLN00164 83 AG--------VEEFISRYIQLHAPHVRAAIAGLS----C-PVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALML 149 (480)
T ss_pred cc--------HHHHHHHHHHhhhHHHHHHHHhcC----C-CceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHh
Confidence 10 112222 33567778888887651 1 4599999999999999999999999999999998877766
Q ss_pred hhhccC---C--CCCCCCCccccCCCCC--------Ccc------cC---------------------------------
Q 044624 148 SLWVDL---P--HRNTDSDEFLLLDFPE--------AST------IH--------------------------------- 175 (358)
Q Consensus 148 ~~~~~~---p--~~~~~~~~~~~p~~~~--------~~~------~~--------------------------------- 175 (358)
+.+... + .... .+.+.+|++|. .+. +.
T Consensus 150 ~~~~~~~~~~~~~~~~-~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 228 (480)
T PLN00164 150 RLPALDEEVAVEFEEM-EGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIAD 228 (480)
T ss_pred hhhhhcccccCccccc-CcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHh
Confidence 542210 0 0000 01112333321 000 00
Q ss_pred ----------cccccCCCCCC--CCCCCCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEE
Q 044624 176 ----------PVLRFTGSKAG--AGKEHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWI 243 (358)
Q Consensus 176 ----------p~~~~~~~~~~--~~~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~ 243 (358)
|+++ +||... ........+.+|.+|||+++++|||||||||+..++.+++++++.||+.++++|||+
T Consensus 229 ~~~~~~~~~~~v~~-vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv 307 (480)
T PLN00164 229 GRCTPGRPAPTVYP-IGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWV 307 (480)
T ss_pred ccccccCCCCceEE-eCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 1111 144321 111112345679999999999999999999999999999999999999999999999
Q ss_pred ecCCCC----------CC--CCC---------CCCc-ccc-----------------cCCcchhhhhhcCcceEeccccc
Q 044624 244 VRPPIG----------FD--INS---------EFRA-NDA-----------------DGTQSALEALSHGVPINGWPLAA 284 (358)
Q Consensus 244 ~~~~~~----------~~--~~~---------~~~~-~wl-----------------gG~~s~~eal~~GvP~l~~P~~~ 284 (358)
++.+.. .. ... +.+. .|+ |||||++||+++|||||+||+++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~ 387 (480)
T PLN00164 308 LRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYA 387 (480)
T ss_pred EcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccc
Confidence 985320 00 000 1111 565 99999999999999999999999
Q ss_pred cchhhhhhhhccccceEEecccC--CccccHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHhhcc-CccccCC
Q 044624 285 EQFYNSNLLGEEVGVCAEVARGM--NCAVLKEHIVVKIELVMNETE-KGKPMRMKDLEVKEIIDNAFRN-DENLRDL 357 (358)
Q Consensus 285 DQ~~na~~v~~~~G~G~~l~~~~--~~~~~~~~l~~ai~~ll~~~~-~~~~~r~~a~~l~~~~~~a~~~-gss~~~~ 357 (358)
||+.||+++++.||+|++++..+ ++.+++++|+++|+++|.+++ ||+.+|+||+++++++++|+++ |||++||
T Consensus 388 DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l 464 (480)
T PLN00164 388 EQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAAL 464 (480)
T ss_pred cchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999988889999996421 135799999999999998865 5889999999999999999999 9999875
No 18
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.8e-52 Score=394.90 Aligned_cols=343 Identities=21% Similarity=0.297 Sum_probs=237.9
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCC--cEEEEEeCCcch-hhhhh----cCCCCCCeEEEeccCCccCCCCCCCCCCCCC
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKN--YTIAFVNTHLNI-KKIKS----SLPQSSPIHFLETPFNIIDHDLPPCTENTDS 73 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rG--h~Vt~~t~~~~~-~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 73 (358)
++|||++||++||++||+.|+. +| +.|||++++.+. ..+.. .....++++|+.+|.. +..+.. .....
T Consensus 8 ~~P~p~qGHi~P~l~lA~~La~-~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~~~~~~-~~~~~ 82 (468)
T PLN02207 8 FIPTPTVGHLVPFLEFARRLIE-QDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPEL---EEKPTL-GGTQS 82 (468)
T ss_pred EeCCcchhhHHHHHHHHHHHHh-CCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCC---CCCCcc-ccccC
Confidence 5899999999999999999999 98 999999998765 22211 1110146999988832 111110 11111
Q ss_pred CCchHHHHHHHHHhhc----hHHHHHHHHHHhhhcCCCCC-cEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhh
Q 044624 74 HPFDVVRKLLEATLSF----KPHFKKLIIDLIDEQNGHKP-LCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYS 148 (358)
Q Consensus 74 ~~~~~~~~~~~~~~~~----~~~l~~ll~~~~~~~~~~~p-d~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 148 (358)
....+......+ .+.+.+++++.. ..+ +| +|||+|.+++|+.++|+++|||++.|++++++.+..+.+
T Consensus 83 ----~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~-~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~ 155 (468)
T PLN02207 83 ----VEAYVYDVIEKNIPLVRNIVMDILSSLA--LDG-VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQY 155 (468)
T ss_pred ----HHHHHHHHHHhcchhHHHHHHHHHHHhc--cCC-CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 112233333344 334455554321 112 34 999999999999999999999999999999887776654
Q ss_pred hhcc-CCCCCC---CC-CccccCCC-CC--------Ccc----cC-------------------------c---------
Q 044624 149 LWVD-LPHRNT---DS-DEFLLLDF-PE--------AST----IH-------------------------P--------- 176 (358)
Q Consensus 149 ~~~~-~p~~~~---~~-~~~~~p~~-~~--------~~~----~~-------------------------p--------- 176 (358)
.... .+.... .. ..+.+|++ +. .+. +. +
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~ 235 (468)
T PLN02207 156 LADRHSKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVEDGYDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQ 235 (468)
T ss_pred hhhccccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCccHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhcc
Confidence 4211 110000 00 11234554 21 000 00 1
Q ss_pred cccc---CCCCCCCCC--CC---CCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q 044624 177 VLRF---TGSKAGAGK--EH---GISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPI 248 (358)
Q Consensus 177 ~~~~---~~~~~~~~~--~~---~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~ 248 (358)
..+. +|+...... .. ...+.+|.+|||+++++|||||||||...++.+++++++.||+.++++|||+++.+.
T Consensus 236 ~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~ 315 (468)
T PLN02207 236 NYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEE 315 (468)
T ss_pred CCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCC
Confidence 1121 144321110 00 112367999999999899999999999999999999999999999999999998532
Q ss_pred ---------CCCC---CCCCCcccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhhhhccccc
Q 044624 249 ---------GFDI---NSEFRANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGV 299 (358)
Q Consensus 249 ---------~~~~---~~~~~~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~ 299 (358)
++.+ ..+.+.+|+ |||||++||+++|||||+||+++||+.||+++++.||+
T Consensus 316 ~~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gv 395 (468)
T PLN02207 316 VTNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKL 395 (468)
T ss_pred ccccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCc
Confidence 1111 112344776 99999999999999999999999999999999987899
Q ss_pred eEEeccc----CCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcc-CccccCC
Q 044624 300 CAEVARG----MNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNAFRN-DENLRDL 357 (358)
Q Consensus 300 G~~l~~~----~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~~~~~~a~~~-gss~~~~ 357 (358)
|+++..+ ..+.+++++|+++|+++|+ + ++++||+||++|++++++|+++ |||++||
T Consensus 396 Gv~~~~~~~~~~~~~v~~e~i~~av~~vm~-~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l 456 (468)
T PLN02207 396 AVELKLDYRVHSDEIVNANEIETAIRCVMN-K-DNNVVRKRVMDISQMIQRATKNGGSSFAAI 456 (468)
T ss_pred eEEEecccccccCCcccHHHHHHHHHHHHh-c-chHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 9988421 1235699999999999997 2 4569999999999999999999 9999875
No 19
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.1e-52 Score=395.57 Aligned_cols=331 Identities=21% Similarity=0.325 Sum_probs=240.0
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHH
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVR 80 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
++|||++||++||++||+.|+. +|++|||+|++.+..++.+.....++++|+.+|. +++... +. .+.
T Consensus 11 lvPfPaqGHi~PmL~LAk~Las-~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~-----g~~~~~------~~-~~~ 77 (448)
T PLN02562 11 LVPYPAQGHVTPMLKLASAFLS-RGFEPVVITPEFIHRRISATLDPKLGITFMSISD-----GQDDDP------PR-DFF 77 (448)
T ss_pred EEcCccccCHHHHHHHHHHHHh-CCCEEEEEeCcchhhhhhhccCCCCCEEEEECCC-----CCCCCc------cc-cHH
Confidence 5899999999999999999999 9999999999988776655321114699998772 333211 11 122
Q ss_pred HHHHHHh-hchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhhcc-----CC
Q 044624 81 KLLEATL-SFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLWVD-----LP 154 (358)
Q Consensus 81 ~~~~~~~-~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~-----~p 154 (358)
.+...+. .+.+.++++++++... + +++|||+|.+.+|+.++|+++|||++.|+++++..+..+.+.+.+ .+
T Consensus 78 ~l~~a~~~~~~~~l~~ll~~l~~~--~-pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~ 154 (448)
T PLN02562 78 SIENSMENTMPPQLERLLHKLDED--G-EVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLIS 154 (448)
T ss_pred HHHHHHHHhchHHHHHHHHHhcCC--C-CcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccc
Confidence 3344443 5788888888876321 2 458999999999999999999999999999988776655433211 11
Q ss_pred CCCCCC--Cc-cccCCCCC--------Cc--c------c-------------------------------------Cccc
Q 044624 155 HRNTDS--DE-FLLLDFPE--------AS--T------I-------------------------------------HPVL 178 (358)
Q Consensus 155 ~~~~~~--~~-~~~p~~~~--------~~--~------~-------------------------------------~p~~ 178 (358)
..+... +. ..+|++|. .+ . + +|..
T Consensus 155 ~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~ 234 (448)
T PLN02562 155 ETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQN 234 (448)
T ss_pred cccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccC
Confidence 000000 00 02333321 00 0 0 0111
Q ss_pred cc---CCCCCCCCC----CC--CCChhHHHHHhhcCCCCceEEEEeccCC-CCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q 044624 179 RF---TGSKAGAGK----EH--GISAELCKNWLDRKPCRSVLYVSFGSQD-TIAVSQMVQLAMALEASGKNFIWIVRPPI 248 (358)
Q Consensus 179 ~~---~~~~~~~~~----~~--~~~~~~~~~wld~~~~~~vvyvs~GS~~-~~~~~~~~~~~~al~~~~~~~lw~~~~~~ 248 (358)
+. +|+...... .. ...+.+|.+|||+++++|||||||||+. .++.+++++++.+|+.++++|||+++...
T Consensus 235 ~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~ 314 (448)
T PLN02562 235 PQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW 314 (448)
T ss_pred CCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc
Confidence 21 144321110 01 1234579999999988999999999986 67899999999999999999999997531
Q ss_pred --CCCC-------CCCCCcccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEE
Q 044624 249 --GFDI-------NSEFRANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAE 302 (358)
Q Consensus 249 --~~~~-------~~~~~~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~ 302 (358)
.+.. ....+.+|+ ||||||+||+++|||||+||+++||+.||+++++.||+|++
T Consensus 315 ~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~ 394 (448)
T PLN02562 315 REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVR 394 (448)
T ss_pred hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeE
Confidence 1211 122344675 99999999999999999999999999999999987899999
Q ss_pred ecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcc-CccccCC
Q 044624 303 VARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNAFRN-DENLRDL 357 (358)
Q Consensus 303 l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~~~~~~a~~~-gss~~~~ 357 (358)
+. .+++++|+++|+++|+|+ +||+||++++++++++ .+ |||++||
T Consensus 395 ~~-----~~~~~~l~~~v~~~l~~~----~~r~~a~~l~~~~~~~-~~gGSS~~nl 440 (448)
T PLN02562 395 IS-----GFGQKEVEEGLRKVMEDS----GMGERLMKLRERAMGE-EARLRSMMNF 440 (448)
T ss_pred eC-----CCCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhc-CCCCCHHHHH
Confidence 85 379999999999999999 9999999999998887 55 8999886
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.7e-52 Score=400.46 Aligned_cols=337 Identities=23% Similarity=0.307 Sum_probs=237.4
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCC--cEEEEEeCCcchhhh-------hhcCCC-CCCeEEEeccCCccCCCCCCCCCC
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKN--YTIAFVNTHLNIKKI-------KSSLPQ-SSPIHFLETPFNIIDHDLPPCTEN 70 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rG--h~Vt~~t~~~~~~~~-------~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~ 70 (358)
++|||++||++||++||+.|+. +| ..|||++++.+...+ .+.... .++++|+.+|.+ .++...
T Consensus 7 l~P~paqGHi~P~l~LAk~La~-~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~-----~~~~~~- 79 (481)
T PLN02554 7 FIPSPGIGHLRPTVELAKLLVD-SDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAG-----DQPTTE- 79 (481)
T ss_pred EeCCcchhhHHHHHHHHHHHHh-CCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCC-----CCCccc-
Confidence 5899999999999999999999 98 899999998765421 111100 146999988743 111110
Q ss_pred CCCCCchHHHHHHHHHhhchHHHHHHHHHHhhh---cCCCCC-cEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHH
Q 044624 71 TDSHPFDVVRKLLEATLSFKPHFKKLIIDLIDE---QNGHKP-LCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACY 146 (358)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---~~~~~p-d~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 146 (358)
. . .+...+..+.+.+++.++++.+. .++ +| +|||+|.+++|+.++|+++|||++.|++++++.++.+
T Consensus 80 --~-~-----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~ 150 (481)
T PLN02554 80 --D-P-----TFQSYIDNQKPKVRDAVAKLVDDSSTPSS-PRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQ 150 (481)
T ss_pred --c-h-----HHHHHHHHHHHHHHHHHHHHHhhhccCCC-CCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHH
Confidence 0 1 11222234445555555544221 112 34 8999999999999999999999999999999888877
Q ss_pred hhhhccC-----CCCCCC-C-CccccCCCCC---------Ccc----cC-------------------------------
Q 044624 147 YSLWVDL-----PHRNTD-S-DEFLLLDFPE---------AST----IH------------------------------- 175 (358)
Q Consensus 147 ~~~~~~~-----p~~~~~-~-~~~~~p~~~~---------~~~----~~------------------------------- 175 (358)
.+.+... +..... . +.+.+|+++. .+. +.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l 230 (481)
T PLN02554 151 LHVQMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSKEWLPLFLAQARRFREMKGILVNTVAELEPQALKFF 230 (481)
T ss_pred HhhhhhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHH
Confidence 6653211 100110 0 1133555421 000 00
Q ss_pred ----ccccc---CCCCCC-CCC-C--CCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEe
Q 044624 176 ----PVLRF---TGSKAG-AGK-E--HGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIV 244 (358)
Q Consensus 176 ----p~~~~---~~~~~~-~~~-~--~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~ 244 (358)
+..+. +|+... ... . ....+.+|.+|||++++++||||||||+..++.+++++++.||+.++++|||++
T Consensus 231 ~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~ 310 (481)
T PLN02554 231 SGSSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSL 310 (481)
T ss_pred HhcccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 01111 144421 111 0 022346899999999888999999999999999999999999999999999999
Q ss_pred cCCCC---------------C-CC-------CCCCCcccc-----------------cCCcchhhhhhcCcceEeccccc
Q 044624 245 RPPIG---------------F-DI-------NSEFRANDA-----------------DGTQSALEALSHGVPINGWPLAA 284 (358)
Q Consensus 245 ~~~~~---------------~-~~-------~~~~~~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~ 284 (358)
+.+.. . .. ..+.+.+|+ |||||++||+++|||||+||+++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~ 390 (481)
T PLN02554 311 RRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYA 390 (481)
T ss_pred cCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccc
Confidence 75210 0 00 011233675 99999999999999999999999
Q ss_pred cchhhhhhhhccccceEEeccc--------CCccccHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHhhcc-Cccc
Q 044624 285 EQFYNSNLLGEEVGVCAEVARG--------MNCAVLKEHIVVKIELVMN-ETEKGKPMRMKDLEVKEIIDNAFRN-DENL 354 (358)
Q Consensus 285 DQ~~na~~v~~~~G~G~~l~~~--------~~~~~~~~~l~~ai~~ll~-~~~~~~~~r~~a~~l~~~~~~a~~~-gss~ 354 (358)
||+.||+++++.||+|+.+++. ..+.+++++|+++|+++|+ |+ +||+||+++++++++|+++ |||+
T Consensus 391 DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~----~~r~~a~~l~~~~~~av~~gGss~ 466 (481)
T PLN02554 391 EQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDS----DVRKRVKEMSEKCHVALMDGGSSH 466 (481)
T ss_pred cchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHhcCCChHH
Confidence 9999997766777999999631 1246899999999999997 56 9999999999999999999 9999
Q ss_pred cCC
Q 044624 355 RDL 357 (358)
Q Consensus 355 ~~~ 357 (358)
+||
T Consensus 467 ~~l 469 (481)
T PLN02554 467 TAL 469 (481)
T ss_pred HHH
Confidence 875
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.2e-50 Score=387.13 Aligned_cols=345 Identities=22% Similarity=0.324 Sum_probs=236.5
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCC---cEEEEEeCCcchh-----hhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCC
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKN---YTIAFVNTHLNIK-----KIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTD 72 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rG---h~Vt~~t~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 72 (358)
+||||++||++||++||+.|+. +| +.||++++..... .+.+.....++++|+.+|++ .+ ++..+...
T Consensus 8 ~~PfpaqGHi~P~l~LAk~La~-~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~~-p~~~~~~~ 82 (475)
T PLN02167 8 FVPFPSTGHILVTIEFAKRLIN-LDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEV---QD-PPPMELFV 82 (475)
T ss_pred EeCChhhhhHHHHHHHHHHHHh-CCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCC---CC-Cccccccc
Confidence 5899999999999999999999 98 4567777543221 12221111146999998854 11 21111001
Q ss_pred CCCchHHHHHHHHHhhchHHHHHHHHHHhhh--cCCC-CCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhh
Q 044624 73 SHPFDVVRKLLEATLSFKPHFKKLIIDLIDE--QNGH-KPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSL 149 (358)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--~~~~-~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 149 (358)
... ...+...+..+.+.++++++++... .++. +++|||+|.+++|+.++|+++|||++.|++++++.++.+.+.
T Consensus 83 ~~~---~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~ 159 (475)
T PLN02167 83 KAS---EAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYL 159 (475)
T ss_pred cch---HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHH
Confidence 101 1223333345566667766654211 1121 349999999999999999999999999999998877766543
Q ss_pred hc-c--CCCC--C-CCCCccccCCCCCC-----cc--------cC-----------------------------------
Q 044624 150 WV-D--LPHR--N-TDSDEFLLLDFPEA-----ST--------IH----------------------------------- 175 (358)
Q Consensus 150 ~~-~--~p~~--~-~~~~~~~~p~~~~~-----~~--------~~----------------------------------- 175 (358)
+. . .+.. . ...+.+.+|+++.. +. +.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~ 239 (475)
T PLN02167 160 PERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSRLP 239 (475)
T ss_pred HHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcchHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHhhc
Confidence 21 1 1100 0 00111334554210 00 00
Q ss_pred ----cccccCCCCCCCCC-C----CCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecC
Q 044624 176 ----PVLRFTGSKAGAGK-E----HGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRP 246 (358)
Q Consensus 176 ----p~~~~~~~~~~~~~-~----~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~ 246 (358)
|+++. |+...... . ......+|.+|||.++++|||||||||+..++.+++++++.+|+.++++|||+++.
T Consensus 240 ~~~p~v~~v-Gpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~ 318 (475)
T PLN02167 240 ENYPPVYPV-GPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRT 318 (475)
T ss_pred ccCCeeEEe-ccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEec
Confidence 11111 44321100 0 11123679999999988999999999999999999999999999999999999985
Q ss_pred CCC--------CCC----CC---CCCcccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhhhh
Q 044624 247 PIG--------FDI----NS---EFRANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLG 294 (358)
Q Consensus 247 ~~~--------~~~----~~---~~~~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~ 294 (358)
+.. +.. +. +.+.+|+ |||||++||+++|||||+||+++||+.||++++
T Consensus 319 ~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~ 398 (475)
T PLN02167 319 NPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMV 398 (475)
T ss_pred CcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHH
Confidence 311 110 00 1344775 999999999999999999999999999999877
Q ss_pred ccccceEEeccc---C-CccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcc-CccccCC
Q 044624 295 EEVGVCAEVARG---M-NCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNAFRN-DENLRDL 357 (358)
Q Consensus 295 ~~~G~G~~l~~~---~-~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~~~~~~a~~~-gss~~~~ 357 (358)
+.||+|+.++.. + +..+++++|+++|+++|+++ ++||+||+++++.+++|+++ |||++||
T Consensus 399 ~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~---~~~r~~a~~~~~~~~~av~~gGsS~~~l 463 (475)
T PLN02167 399 KELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE---DVPRKKVKEIAEAARKAVMDGGSSFVAV 463 (475)
T ss_pred HHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 777999999642 1 13579999999999999754 28999999999999999999 9999875
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.3e-37 Score=298.81 Aligned_cols=326 Identities=19% Similarity=0.207 Sum_probs=211.0
Q ss_pred cccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCC------CC-
Q 044624 2 LPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTD------SH- 74 (358)
Q Consensus 2 ~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~------~~- 74 (358)
+|.++.||+.-+.+|+++|++ |||+||++++.... ....... .+++.+.++... +.......... ..
T Consensus 27 ~P~~~~SH~~~~~~l~~~La~-rGH~VTvi~p~~~~-~~~~~~~--~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~ 100 (507)
T PHA03392 27 FPTPAYSHHSVFKVYVEALAE-RGHNVTVIKPTLRV-YYASHLC--GNITEIDASLSV--EYFKKLVKSSAVFRKRGVVA 100 (507)
T ss_pred cCCCCCcHHHHHHHHHHHHHH-cCCeEEEEeccccc-ccccCCC--CCEEEEEcCCCh--HHHHHHHhhhhHHHhhhhhh
Confidence 466899999999999999999 99999999875321 1110001 556655443210 00000000000 00
Q ss_pred C-chHHH----HHHHHHh--hchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHh-CCceEEEcchhHHHH--H
Q 044624 75 P-FDVVR----KLLEATL--SFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEY-GIFHAIFIEGGGFGF--A 144 (358)
Q Consensus 75 ~-~~~~~----~~~~~~~--~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~l-giP~v~~~~~~~~~~--~ 144 (358)
. ..... .+...+. ...+.+.+++++ ++ . ++|+||+|.+..++..+|+.+ ++|.|.+++...... .
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~-~~---~-kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~ 175 (507)
T PHA03392 101 DSSTVTADNYMGLVRMISDQFDLPNVKNLIAN-KN---N-KFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFE 175 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc-CC---C-ceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHH
Confidence 0 00000 0011111 113445555541 01 1 799999999988888899999 999988877543211 1
Q ss_pred HHh---hhhccCCCCCCCC-C-----------------------------c---cccCC-CCCCc---------------
Q 044624 145 CYY---SLWVDLPHRNTDS-D-----------------------------E---FLLLD-FPEAS--------------- 172 (358)
Q Consensus 145 ~~~---~~~~~~p~~~~~~-~-----------------------------~---~~~p~-~~~~~--------------- 172 (358)
... .++.++|...... + . ..++. .|...
T Consensus 176 ~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~ 255 (507)
T PHA03392 176 TMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHP 255 (507)
T ss_pred hhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCc
Confidence 122 2334555432110 0 0 00010 11100
Q ss_pred --c-cCcccccC---CCCCCCCCCCCCChhHHHHHhhcCCCCceEEEEeccCCC---CCHHHHHHHHHHHHhCCCcEEEE
Q 044624 173 --T-IHPVLRFT---GSKAGAGKEHGISAELCKNWLDRKPCRSVLYVSFGSQDT---IAVSQMVQLAMALEASGKNFIWI 243 (358)
Q Consensus 173 --~-~~p~~~~~---~~~~~~~~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~~---~~~~~~~~~~~al~~~~~~~lw~ 243 (358)
. .+|+.+.. |+.........+.++++.+|+++++ +++|||||||+.. .+.+.++.++++++.++++|||+
T Consensus 256 ~~d~~rp~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~ 334 (507)
T PHA03392 256 VFDNNRPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWK 334 (507)
T ss_pred cccCCCCCCCCeeeecccccCCCCCCCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 0 01443332 2211111122456788999999864 5799999999863 56788899999999999999999
Q ss_pred ecCCCCCCCCCC--CCcccc-----------------cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEec
Q 044624 244 VRPPIGFDINSE--FRANDA-----------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVA 304 (358)
Q Consensus 244 ~~~~~~~~~~~~--~~~~wl-----------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 304 (358)
++........++ ...+|+ ||+||++||+++|||||++|+++||+.||+|++++ |+|+.++
T Consensus 335 ~~~~~~~~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~ 413 (507)
T PHA03392 335 YDGEVEAINLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVEL-GIGRALD 413 (507)
T ss_pred ECCCcCcccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHc-CcEEEec
Confidence 985431111122 234665 99999999999999999999999999999999988 9999999
Q ss_pred ccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 044624 305 RGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNA 347 (358)
Q Consensus 305 ~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~~~~~~a 347 (358)
+ ..+++++|+++|+++|+|+ +||+||+++++.+++.
T Consensus 414 ~---~~~t~~~l~~ai~~vl~~~----~y~~~a~~ls~~~~~~ 449 (507)
T PHA03392 414 T---VTVSAAQLVLAIVDVIENP----KYRKNLKELRHLIRHQ 449 (507)
T ss_pred c---CCcCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhC
Confidence 7 7899999999999999999 9999999999999874
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.1e-40 Score=324.16 Aligned_cols=149 Identities=25% Similarity=0.312 Sum_probs=118.9
Q ss_pred CCCChhHHHHHhhcCCCCceEEEEeccCCCC-CHHHHHHHHHHHHhCCCcEEEEecCCC-CCCCCCCCCcccc-------
Q 044624 191 HGISAELCKNWLDRKPCRSVLYVSFGSQDTI-AVSQMVQLAMALEASGKNFIWIVRPPI-GFDINSEFRANDA------- 261 (358)
Q Consensus 191 ~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~-~~~~~~~~~~al~~~~~~~lw~~~~~~-~~~~~~~~~~~wl------- 261 (358)
..+.+.++..|++...++++|||||||+... +.+.+++++++|++++++|||+++... .....+..+.+|+
T Consensus 259 ~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~~~l~~n~~~~~W~PQ~~lL~ 338 (500)
T PF00201_consen 259 AKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPPENLPKNVLIVKWLPQNDLLA 338 (500)
T ss_dssp --TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHGCHHHTTEEEESS--HHHHHT
T ss_pred ccccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCcccccccccccccccceEEEeccccchhhhh
Confidence 3467888999999855678999999999754 444578999999999999999998732 1111223445776
Q ss_pred ----------cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCH
Q 044624 262 ----------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGK 331 (358)
Q Consensus 262 ----------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~ 331 (358)
||+||++||+++|||||++|+++||+.||++++++ |+|+.+++ ..+|+++|.++|+++|+|+
T Consensus 339 hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~---~~~~~~~l~~ai~~vl~~~---- 410 (500)
T PF00201_consen 339 HPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLDK---NDLTEEELRAAIREVLENP---- 410 (500)
T ss_dssp STTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEGG---GC-SHHHHHHHHHHHHHSH----
T ss_pred cccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEE-eeEEEEEe---cCCcHHHHHHHHHHHHhhh----
Confidence 99999999999999999999999999999999999 99999998 7899999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 044624 332 PMRMKDLEVKEIIDNA 347 (358)
Q Consensus 332 ~~r~~a~~l~~~~~~a 347 (358)
+|++||+++++.+++-
T Consensus 411 ~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 411 SYKENAKRLSSLFRDR 426 (500)
T ss_dssp HHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998864
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.3e-35 Score=280.01 Aligned_cols=317 Identities=16% Similarity=0.130 Sum_probs=204.3
Q ss_pred cccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHH
Q 044624 2 LPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRK 81 (358)
Q Consensus 2 ~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (358)
+.+|+.||++|++.||++|++ +||+|||++++.+.+.+++ .|++|..++........... ... . ....
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~-~Gh~V~~~~~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~--~~~--~--~~~~ 68 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVA-RGHRVTYATTEEFAERVEA-----AGAEFVLYGSALPPPDNPPE--NTE--E--EPID 68 (392)
T ss_pred CCCCccccccccHHHHHHHHh-CCCeEEEEeCHHHHHHHHH-----cCCEEEecCCcCcccccccc--ccC--c--chHH
Confidence 578999999999999999999 9999999999999999988 89999877632111001100 000 0 1111
Q ss_pred HHHHH-hhc---hHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhh-----c-
Q 044624 82 LLEAT-LSF---KPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLW-----V- 151 (358)
Q Consensus 82 ~~~~~-~~~---~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~-----~- 151 (358)
+...+ ... .+.+.++++.+ +||+||+|.+++++..+|+++|||+|.+++....... +.+.. .
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~~-------~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~-~~~~~~~~~~~~ 140 (392)
T TIGR01426 69 IIEKLLDEAEDVLPQLEEAYKGD-------RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE-FEEMVSPAGEGS 140 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-------CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc-ccccccccchhh
Confidence 12111 212 22233333333 7999999999999999999999999998654321100 00000 0
Q ss_pred --cCCCCC--CCC--C-------ccccCCCCCC----------cc-cCcccccCC----CCC-CCCCCCCCChhHHHHHh
Q 044624 152 --DLPHRN--TDS--D-------EFLLLDFPEA----------ST-IHPVLRFTG----SKA-GAGKEHGISAELCKNWL 202 (358)
Q Consensus 152 --~~p~~~--~~~--~-------~~~~p~~~~~----------~~-~~p~~~~~~----~~~-~~~~~~~~~~~~~~~wl 202 (358)
..+... ... + ...++..+.. +. ..|.+.... ... ..+. ......+...|.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp-~~~~~~~~~~~~ 219 (392)
T TIGR01426 141 AEEGAIAERGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTFVGP-CIGDRKEDGSWE 219 (392)
T ss_pred hhhhccccchhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEEECC-CCCCccccCCCC
Confidence 000000 000 0 0001000000 00 000000000 000 0000 011111233477
Q ss_pred hcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCC---CCCCCC--CCcccc---------------c
Q 044624 203 DRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIG---FDINSE--FRANDA---------------D 262 (358)
Q Consensus 203 d~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~---~~~~~~--~~~~wl---------------g 262 (358)
+...++++|||||||+.......++++++++++.+.+++|..+.... ...... ...+|+ |
T Consensus 220 ~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~I~hg 299 (392)
T TIGR01426 220 RPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADLGELPPNVEVRQWVPQLEILKKADAFITHG 299 (392)
T ss_pred CCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChhHhccCCCCeEEeCCCCHHHHHhhCCEEEECC
Confidence 76667889999999987767778889999999999999988765421 111111 122333 9
Q ss_pred CCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 044624 263 GTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKE 342 (358)
Q Consensus 263 G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~~ 342 (358)
|+||++||+++|+|+|++|...||+.||+++++. |+|+.+.. ..+++++|.++|+++|+|+ +|+++++++++
T Consensus 300 G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~-g~g~~l~~---~~~~~~~l~~ai~~~l~~~----~~~~~~~~l~~ 371 (392)
T TIGR01426 300 GMNSTMEALFNGVPMVAVPQGADQPMTARRIAEL-GLGRHLPP---EEVTAEKLREAVLAVLSDP----RYAERLRKMRA 371 (392)
T ss_pred CchHHHHHHHhCCCEEecCCcccHHHHHHHHHHC-CCEEEecc---ccCCHHHHHHHHHHHhcCH----HHHHHHHHHHH
Confidence 9999999999999999999999999999999887 99999986 6789999999999999999 99999999999
Q ss_pred HHHHh
Q 044624 343 IIDNA 347 (358)
Q Consensus 343 ~~~~a 347 (358)
.+++.
T Consensus 372 ~~~~~ 376 (392)
T TIGR01426 372 EIREA 376 (392)
T ss_pred HHHHc
Confidence 98764
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=5.7e-35 Score=276.48 Aligned_cols=323 Identities=15% Similarity=0.064 Sum_probs=200.8
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCC-CCCCCCCCchHH
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPC-TENTDSHPFDVV 79 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~ 79 (358)
|+++|+.||++|++.||++|++ |||+|+|++++.+...++. .|++|..++........... ............
T Consensus 5 ~~~~p~~GHv~P~l~la~~L~~-rGh~V~~~t~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (401)
T cd03784 5 ITTIGSRGDVQPLVALAWALRA-AGHEVRVATPPEFADLVEA-----AGLEFVPVGGDPDELLASPERNAGLLLLGPGLL 78 (401)
T ss_pred EEeCCCcchHHHHHHHHHHHHH-CCCeEEEeeCHhHHHHHHH-----cCCceeeCCCCHHHHHhhhhhcccccccchHHH
Confidence 4789999999999999999999 9999999999998888887 78999876532100000000 000000000111
Q ss_pred HHHHHHH-hhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhh----------
Q 044624 80 RKLLEAT-LSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYS---------- 148 (358)
Q Consensus 80 ~~~~~~~-~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~---------- 148 (358)
..+.... ......+.++++...+ . +||+||+|.+.+++..+|+++|||++.+++++........+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~---~-~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (401)
T cd03784 79 LGALRLLRREAEAMLDDLVAAARD---W-GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPLGRANLRLY 154 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc---c-CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCccchHHHHHH
Confidence 1111111 2222233333332211 1 89999999999999999999999999998765332110000
Q ss_pred -----------h-------hc-c-CCCCC---CCCCc--cccCCCCCCcccCcccccC----CCCCCCCCCCCCChhHHH
Q 044624 149 -----------L-------WV-D-LPHRN---TDSDE--FLLLDFPEASTIHPVLRFT----GSKAGAGKEHGISAELCK 199 (358)
Q Consensus 149 -----------~-------~~-~-~p~~~---~~~~~--~~~p~~~~~~~~~p~~~~~----~~~~~~~~~~~~~~~~~~ 199 (358)
. .. + .+... ...+. ...+... ....|-.+.. |............+.++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 232 (401)
T cd03784 155 ALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAV--LPPPPDWPRFDLVTGYGFRDVPYNGPPPPELW 232 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCccc--CCCCCCccccCcEeCCCCCCCCCCCCCCHHHH
Confidence 0 00 0 00000 00000 0000000 0000000100 000000011223456788
Q ss_pred HHhhcCCCCceEEEEeccCCCCCH-HHHHHHHHHHHhCCCcEEEEecCCCCCC-CCCC--CCcccc--------------
Q 044624 200 NWLDRKPCRSVLYVSFGSQDTIAV-SQMVQLAMALEASGKNFIWIVRPPIGFD-INSE--FRANDA-------------- 261 (358)
Q Consensus 200 ~wld~~~~~~vvyvs~GS~~~~~~-~~~~~~~~al~~~~~~~lw~~~~~~~~~-~~~~--~~~~wl-------------- 261 (358)
.|++. .+++|||||||+..... ..++.++++++..+.++||+.+...... ..++ ...+|+
T Consensus 233 ~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~~~~~~~v~~~~~~p~~~ll~~~d~~I~ 310 (401)
T cd03784 233 LFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLGAEDLPDNVRVVDFVPHDWLLPRCAAVVH 310 (401)
T ss_pred HHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccccccCCCCceEEeCCCCHHHHhhhhheeee
Confidence 89876 45799999999986554 5668899999999999999987643111 1111 122332
Q ss_pred -cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044624 262 -DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEV 340 (358)
Q Consensus 262 -gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l 340 (358)
||+||++||+++|||+|++|+..||+.||+++++. |+|+.++. ..+++++|.++|+++++++ ++++++++
T Consensus 311 hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~-G~g~~l~~---~~~~~~~l~~al~~~l~~~-----~~~~~~~~ 381 (401)
T cd03784 311 HGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAEL-GAGPALDP---RELTAERLAAALRRLLDPP-----SRRRAAAL 381 (401)
T ss_pred cCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHC-CCCCCCCc---ccCCHHHHHHHHHHHhCHH-----HHHHHHHH
Confidence 99999999999999999999999999999999988 99999986 5689999999999999855 55666666
Q ss_pred HHHHHH
Q 044624 341 KEIIDN 346 (358)
Q Consensus 341 ~~~~~~ 346 (358)
++.+++
T Consensus 382 ~~~~~~ 387 (401)
T cd03784 382 LRRIRE 387 (401)
T ss_pred HHHHHh
Confidence 666543
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=8.7e-34 Score=275.62 Aligned_cols=328 Identities=27% Similarity=0.326 Sum_probs=201.1
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeE---EEeccCCccCCCCCCCCCCCCCCCch
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIH---FLETPFNIIDHDLPPCTENTDSHPFD 77 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~ 77 (358)
++++|++||++|++.||+.|++ +||+||++++.......... .....+. ....++....++++....... ..
T Consensus 10 l~~~p~~sH~~~~~~la~~L~~-~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 84 (496)
T KOG1192|consen 10 LVPFPGQSHLNPMLQLAKRLAE-RGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDD---LD 84 (496)
T ss_pred EEECCcccHHHHHHHHHHHHHH-cCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHH---HH
Confidence 4789999999999999999999 99999999998765544321 0001111 111111100112222111000 00
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhC-CceEEEcchhHHHHHHHhhh-hccCCC
Q 044624 78 VVRKLLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYG-IFHAIFIEGGGFGFACYYSL-WVDLPH 155 (358)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~-~~~~p~ 155 (358)
...........+...+++.+......... ++||+|+|.+..|...+|...+ |+...+.+.+........+. ..+.|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~p~ 163 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKSE-KFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSYVPS 163 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhcC-CccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcccccCc
Confidence 00111111122333333333222111111 4999999999888888887775 99888887776554433321 112222
Q ss_pred CCCCC--Ccc---------------------------------ccCCCCC---------------------Cccc--Ccc
Q 044624 156 RNTDS--DEF---------------------------------LLLDFPE---------------------ASTI--HPV 177 (358)
Q Consensus 156 ~~~~~--~~~---------------------------------~~p~~~~---------------------~~~~--~p~ 177 (358)
..... +.. ....... ...+ +|.
T Consensus 164 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~~~~~ 243 (496)
T KOG1192|consen 164 PFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDFEPRPL 243 (496)
T ss_pred ccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCCCCCCC
Confidence 11000 000 0000000 0000 011
Q ss_pred cccC---CCCCCCCCCCCCChh-HHHHHhhcCCCC--ceEEEEeccCC---CCCHHHHHHHHHHHHhC-CCcEEEEecCC
Q 044624 178 LRFT---GSKAGAGKEHGISAE-LCKNWLDRKPCR--SVLYVSFGSQD---TIAVSQMVQLAMALEAS-GKNFIWIVRPP 247 (358)
Q Consensus 178 ~~~~---~~~~~~~~~~~~~~~-~~~~wld~~~~~--~vvyvs~GS~~---~~~~~~~~~~~~al~~~-~~~~lw~~~~~ 247 (358)
.+.+ |+... ....... .|.+|++..+.. +||||||||+. .++.++..+++.+|+.+ +++|+|+++..
T Consensus 244 ~~~v~~IG~l~~---~~~~~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~ 320 (496)
T KOG1192|consen 244 LPKVIPIGPLHV---KDSKQKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPD 320 (496)
T ss_pred CCCceEECcEEe---cCccccccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCC
Confidence 1111 11110 0111111 588899887765 89999999998 79999999999999999 88999999975
Q ss_pred ------CCCCCC-CCCCc--ccc------------------cCCcchhhhhhcCcceEeccccccchhhhhhhhccccce
Q 044624 248 ------IGFDIN-SEFRA--NDA------------------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVC 300 (358)
Q Consensus 248 ------~~~~~~-~~~~~--~wl------------------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G 300 (358)
+++... .+++. +|+ ||||||+|++++|||||++|+++||+.||++++++++++
T Consensus 321 ~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~ 400 (496)
T KOG1192|consen 321 DSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGG 400 (496)
T ss_pred cchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEE
Confidence 233332 22222 465 999999999999999999999999999999999995555
Q ss_pred EEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 044624 301 AEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIID 345 (358)
Q Consensus 301 ~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~~~~~ 345 (358)
+.... ..+.+.+..++.++++++ +|+++|+++++.++
T Consensus 401 v~~~~----~~~~~~~~~~~~~il~~~----~y~~~~~~l~~~~~ 437 (496)
T KOG1192|consen 401 VLDKR----DLVSEELLEAIKEILENE----EYKEAAKRLSEILR 437 (496)
T ss_pred EEehh----hcCcHHHHHHHHHHHcCh----HHHHHHHHHHHHHH
Confidence 55543 555555999999999999 99999999999876
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.97 E-value=4.6e-31 Score=247.13 Aligned_cols=320 Identities=19% Similarity=0.174 Sum_probs=198.6
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHH
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVR 80 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
++..|..||++|++.||++|.+ +||+|+|+|++.+.+.+++ .|+.|..++.. +......+....... ...
T Consensus 6 ~~~~~~~Ghv~p~~aL~~eL~~-~gheV~~~~~~~~~~~ve~-----ag~~f~~~~~~---~~~~~~~~~~~~~~~-~~~ 75 (406)
T COG1819 6 FVVCGAYGHVNPCLALGKELRR-RGHEVVFASTGKFKEFVEA-----AGLAFVAYPIR---DSELATEDGKFAGVK-SFR 75 (406)
T ss_pred EEeccccccccchHHHHHHHHh-cCCeEEEEeCHHHHHHHHH-----hCcceeecccc---CChhhhhhhhhhccc-hhH
Confidence 3567889999999999999999 9999999999999999998 67777766531 110111111110000 011
Q ss_pred HHHHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhhc---------
Q 044624 81 KLLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLWV--------- 151 (358)
Q Consensus 81 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~--------- 151 (358)
.....+......+.+++.+. .||+|+.|.-.... .+++..++|++..................
T Consensus 76 ~~~~~~~~~~~~~~~~~~e~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (406)
T COG1819 76 RLLQQFKKLIRELLELLREL-------EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLP 147 (406)
T ss_pred HHhhhhhhhhHHHHHHHHhc-------chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCccccccccccc
Confidence 01111122223333444444 78888888755544 77788888877654432211111100000
Q ss_pred --c--CCCCCCC-----CC---------cc-ccCCCCC---Cc--------ccCccccc---CCCCC--CCCCCCCCChh
Q 044624 152 --D--LPHRNTD-----SD---------EF-LLLDFPE---AS--------TIHPVLRF---TGSKA--GAGKEHGISAE 196 (358)
Q Consensus 152 --~--~p~~~~~-----~~---------~~-~~p~~~~---~~--------~~~p~~~~---~~~~~--~~~~~~~~~~~ 196 (358)
+ .+..... .. .. .-+..+. .+ .+.+..+. .-+.. ..+........
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 227 (406)
T COG1819 148 IPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIGPLLGEAAN 227 (406)
T ss_pred ccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCccccccccccc
Confidence 0 0000000 00 00 0000000 00 00011000 00000 00001122233
Q ss_pred HHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCC-CCCCC--CCCcccc------------
Q 044624 197 LCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIG-FDINS--EFRANDA------------ 261 (358)
Q Consensus 197 ~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~-~~~~~--~~~~~wl------------ 261 (358)
+...|.. .++++||+||||.... .+.++.+.++++.++.++|........ ..+.+ ..+..|+
T Consensus 228 ~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~~~~~~~~p~n~~v~~~~p~~~~l~~ad~v 304 (406)
T COG1819 228 ELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGARDTLVNVPDNVIVADYVPQLELLPRADAV 304 (406)
T ss_pred cCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccccccccccCCCceEEecCCCHHHHhhhcCEE
Confidence 3444533 3568999999999876 888899999999999999988866111 11111 1223443
Q ss_pred ---cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 044624 262 ---DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDL 338 (358)
Q Consensus 262 ---gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~ 338 (358)
||+|||+|||++|||+|++|...||+.||.++++. |+|+.+++ ...+++.++++|+++|+|+ .|+++++
T Consensus 305 I~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~-G~G~~l~~---~~l~~~~l~~av~~vL~~~----~~~~~~~ 376 (406)
T COG1819 305 IHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEEL-GAGIALPF---EELTEERLRAAVNEVLADD----SYRRAAE 376 (406)
T ss_pred EecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHc-CCceecCc---ccCCHHHHHHHHHHHhcCH----HHHHHHH
Confidence 99999999999999999999999999999999988 99999997 7899999999999999999 9999999
Q ss_pred HHHHHHHHhhc
Q 044624 339 EVKEIIDNAFR 349 (358)
Q Consensus 339 ~l~~~~~~a~~ 349 (358)
++++.+++..+
T Consensus 377 ~~~~~~~~~~g 387 (406)
T COG1819 377 RLAEEFKEEDG 387 (406)
T ss_pred HHHHHhhhccc
Confidence 99999887654
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.79 E-value=2e-17 Score=153.13 Aligned_cols=293 Identities=17% Similarity=0.142 Sum_probs=169.7
Q ss_pred CCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhh--hhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHH
Q 044624 5 MAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKK--IKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKL 82 (358)
Q Consensus 5 p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
+..||++|-+.||++|.+ +||+|.|+++....+. +.+ .++.+..++.. ++.. .. ....+...
T Consensus 10 GTGGHi~Pala~a~~l~~-~g~~v~~vg~~~~~e~~l~~~-----~g~~~~~~~~~----~l~~----~~--~~~~~~~~ 73 (352)
T PRK12446 10 GSAGHVTPNLAIIPYLKE-DNWDISYIGSHQGIEKTIIEK-----ENIPYYSISSG----KLRR----YF--DLKNIKDP 73 (352)
T ss_pred CcHHHHHHHHHHHHHHHh-CCCEEEEEECCCccccccCcc-----cCCcEEEEecc----CcCC----Cc--hHHHHHHH
Confidence 466999999999999999 9999999998765432 222 56777766521 2211 00 10011111
Q ss_pred HHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCcc--HHHHHHHhCCceEEEcchhHHHHHHHhhhhccCCCCCCCC
Q 044624 83 LEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGW--CKEIAQEYGIFHAIFIEGGGFGFACYYSLWVDLPHRNTDS 160 (358)
Q Consensus 83 ~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~ 160 (358)
.... ...-....++++. +||+||....+.. +..+|..+++|++.+..............+ +..
T Consensus 74 ~~~~-~~~~~~~~i~~~~-------kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~~nr~~~~-~a~------ 138 (352)
T PRK12446 74 FLVM-KGVMDAYVRIRKL-------KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGLANKIALR-FAS------ 138 (352)
T ss_pred HHHH-HHHHHHHHHHHhc-------CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccHHHHHHHH-hhC------
Confidence 1111 1112233556776 9999999776654 456888899999987655422222111100 000
Q ss_pred CccccCCCCCC---cccCcccccCCCCCCCCCCCCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHH-HHHHHHHHHhC
Q 044624 161 DEFLLLDFPEA---STIHPVLRFTGSKAGAGKEHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQ-MVQLAMALEAS 236 (358)
Q Consensus 161 ~~~~~p~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~-~~~~~~al~~~ 236 (358)
....+++.. +.-..+... |..+.... ..........-+.-.+++++|+|.-||.....-++ +.+++..+..
T Consensus 139 --~v~~~f~~~~~~~~~~k~~~t-G~Pvr~~~-~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~- 213 (352)
T PRK12446 139 --KIFVTFEEAAKHLPKEKVIYT-GSPVREEV-LKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL- 213 (352)
T ss_pred --EEEEEccchhhhCCCCCeEEE-CCcCCccc-ccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-
Confidence 001111110 000011111 21111000 01111111112222345679999999997644433 3444444432
Q ss_pred CCcEEEEecCCCCCCC-----CC----CCC----cccc---------cCCcchhhhhhcCcceEecccc-----ccchhh
Q 044624 237 GKNFIWIVRPPIGFDI-----NS----EFR----ANDA---------DGTQSALEALSHGVPINGWPLA-----AEQFYN 289 (358)
Q Consensus 237 ~~~~lw~~~~~~~~~~-----~~----~~~----~~wl---------gG~~s~~eal~~GvP~l~~P~~-----~DQ~~n 289 (358)
+..++|..+.+. ... .. .+. .+++ ||.+|+.|++++|+|+|.+|+. .||..|
T Consensus 214 ~~~vv~~~G~~~-~~~~~~~~~~~~~~~f~~~~m~~~~~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~N 292 (352)
T PRK12446 214 KYQIVHLCGKGN-LDDSLQNKEGYRQFEYVHGELPDILAITDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILN 292 (352)
T ss_pred CcEEEEEeCCch-HHHHHhhcCCcEEecchhhhHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHH
Confidence 478888887642 110 00 111 1111 9999999999999999999985 489999
Q ss_pred hhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044624 290 SNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVK 341 (358)
Q Consensus 290 a~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~ 341 (358)
|.++++. |+|..+.. .+++++.|.+++.++++|+ +.|++++++++
T Consensus 293 a~~l~~~-g~~~~l~~---~~~~~~~l~~~l~~ll~~~---~~~~~~~~~~~ 337 (352)
T PRK12446 293 AESFERQ-GYASVLYE---EDVTVNSLIKHVEELSHNN---EKYKTALKKYN 337 (352)
T ss_pred HHHHHHC-CCEEEcch---hcCCHHHHHHHHHHHHcCH---HHHHHHHHHcC
Confidence 9999988 99999975 6789999999999999885 15666665543
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.75 E-value=1.1e-16 Score=146.68 Aligned_cols=274 Identities=20% Similarity=0.166 Sum_probs=149.7
Q ss_pred CCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHHH-
Q 044624 5 MAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKLL- 83 (358)
Q Consensus 5 p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (358)
-+.||+.-.+.|+++| + ||+|+|++.....+.+.+ .+....++.. .........+. . .......
T Consensus 10 ~G~GH~~R~~~la~~L-r--g~~v~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~-~-~~~~~~~~ 74 (318)
T PF13528_consen 10 HGLGHASRCLALARAL-R--GHEVTFITSGPAPEFLKP------RFPVREIPGL----GPIQENGRLDR-W-KTVRNNIR 74 (318)
T ss_pred CCcCHHHHHHHHHHHH-c--cCceEEEEcCCcHHHhcc------ccCEEEccCc----eEeccCCccch-H-HHHHHHHH
Confidence 4889999999999999 5 799999999866555533 2444444311 11111111111 0 0111111
Q ss_pred --HHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhhccCCCCC-C-C
Q 044624 84 --EATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLWVDLPHRN-T-D 159 (358)
Q Consensus 84 --~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~-~-~ 159 (358)
.........+.++++.. +||+||+|. .+.+..+|+..|||++.+........... ..+... . .
T Consensus 75 ~~~~~~~~~~~~~~~l~~~-------~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~~~-----~~~~~~~~~~ 141 (318)
T PF13528_consen 75 WLARLARRIRREIRWLREF-------RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHPNF-----WLPWDQDFGR 141 (318)
T ss_pred hhHHHHHHHHHHHHHHHhc-------CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcccccC-----CcchhhhHHH
Confidence 11111222333444444 899999996 55567889999999998876543221000 000000 0 0
Q ss_pred -CCc----cccCCCCCCc--ccC-cccccCCCCCCCCCCCCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHH
Q 044624 160 -SDE----FLLLDFPEAS--TIH-PVLRFTGSKAGAGKEHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAM 231 (358)
Q Consensus 160 -~~~----~~~p~~~~~~--~~~-p~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~ 231 (358)
.+. ...+.....+ .+. |..+.. .....+.. ...+..... ..+.+.|+|+||..... .+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~p~---~~~~~~~~~--~~~~~~iLv~~gg~~~~------~~~~ 209 (318)
T PF13528_consen 142 LIERYIDRYHFPPADRRLALSFYPPLPPFF-RVPFVGPI---IRPEIRELP--PEDEPKILVYFGGGGPG------DLIE 209 (318)
T ss_pred HHHHhhhhccCCcccceecCCccccccccc-cccccCch---hcccccccC--CCCCCEEEEEeCCCcHH------HHHH
Confidence 000 0000000000 000 000000 00000000 011110111 12346899999988543 5566
Q ss_pred HHHhCC-CcEEEEecCCCC-CCCCC----CCC----cccc---------cCCcchhhhhhcCcceEeccc--cccchhhh
Q 044624 232 ALEASG-KNFIWIVRPPIG-FDINS----EFR----ANDA---------DGTQSALEALSHGVPINGWPL--AAEQFYNS 290 (358)
Q Consensus 232 al~~~~-~~~lw~~~~~~~-~~~~~----~~~----~~wl---------gG~~s~~eal~~GvP~l~~P~--~~DQ~~na 290 (358)
+++..+ .+|++. +.... ....+ .+. .+++ ||+||++|++++|+|+|++|. ..+|..||
T Consensus 210 ~l~~~~~~~~~v~-g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a 288 (318)
T PF13528_consen 210 ALKALPDYQFIVF-GPNAADPRPGNIHVRPFSTPDFAELMAAADLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNA 288 (318)
T ss_pred HHHhCCCCeEEEE-cCCcccccCCCEEEeecChHHHHHHHHhCCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHH
Confidence 677665 566655 44321 11111 001 1222 999999999999999999999 78999999
Q ss_pred hhhhccccceEEecccCCccccHHHHHHHHHHH
Q 044624 291 NLLGEEVGVCAEVARGMNCAVLKEHIVVKIELV 323 (358)
Q Consensus 291 ~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~l 323 (358)
+++.+. |+|+.++. ..++++.|+++|+++
T Consensus 289 ~~l~~~-G~~~~~~~---~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 289 RKLEEL-GLGIVLSQ---EDLTPERLAEFLERL 317 (318)
T ss_pred HHHHHC-CCeEEccc---ccCCHHHHHHHHhcC
Confidence 999887 99999986 789999999999875
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.73 E-value=1.7e-16 Score=145.60 Aligned_cols=274 Identities=16% Similarity=0.118 Sum_probs=144.3
Q ss_pred cCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeE-EEeccCCccCCCCCCCCCCCCCCCchHHHHH
Q 044624 4 FMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIH-FLETPFNIIDHDLPPCTENTDSHPFDVVRKL 82 (358)
Q Consensus 4 ~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
..+.||+.|.+.|+++|++ ||+|+|+++......+.. .++. +...|. +.....+ .... ....+
T Consensus 8 g~G~GH~~r~~ala~~L~~--g~ev~~~~~~~~~~~~~~-----~~~~~~~~~p~------~~~~~~~-~~~~--~~~~l 71 (321)
T TIGR00661 8 GEGFGHTTRSVAIGEALKN--DYEVSYIASGRSKNYISK-----YGFKVFETFPG------IKLKGED-GKVN--IVKTL 71 (321)
T ss_pred ccCccHHHHHHHHHHHHhC--CCeEEEEEcCCHHHhhhh-----hcCcceeccCC------ceEeecC-CcCc--HHHHH
Confidence 4567999999999999987 999999998774444443 3343 332221 1100000 0000 11111
Q ss_pred HH--HH-hhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHH---------hhhh
Q 044624 83 LE--AT-LSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACY---------YSLW 150 (358)
Q Consensus 83 ~~--~~-~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~---------~~~~ 150 (358)
.. .+ ........+++++. +||+||+| +.+.+..+|+.+|||++.+..+....+... ....
T Consensus 72 ~~~~~~~~~~~~~~~~~l~~~-------~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~~~~~~~~~~~~~~~~~~ 143 (321)
T TIGR00661 72 RNKEYSPKKAIRREINIIREY-------NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTRYPLKTDLIVYPTMAALR 143 (321)
T ss_pred HhhccccHHHHHHHHHHHHhc-------CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhcCCcccchhHHHHHHHHH
Confidence 10 11 11222334566666 89999999 566678899999999997765432210000 0000
Q ss_pred ccCCCCCCCCCccccCCCCCCcccCcccccCCCCCCCCCCCCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHH
Q 044624 151 VDLPHRNTDSDEFLLLDFPEASTIHPVLRFTGSKAGAGKEHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLA 230 (358)
Q Consensus 151 ~~~p~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~ 230 (358)
.+.+ ..+.+..+.++... +..|.. ... ........+..+|... .++.|+|.+||... +.++
T Consensus 144 ~~~~----~~~~~~~~~~~~~~---~~~p~~---~~~-~~~~~~~~~~~~~~~~--~~~~iLv~~g~~~~------~~l~ 204 (321)
T TIGR00661 144 IFNE----RCERFIVPDYPFPY---TICPKI---IKN-MEGPLIRYDVDDVDNY--GEDYILVYIGFEYR------YKIL 204 (321)
T ss_pred Hhcc----ccceEeeecCCCCC---CCCccc---ccc-CCCcccchhhhccccC--CCCcEEEECCcCCH------HHHH
Confidence 0000 00001112111000 000110 000 0000011122223221 24567788887532 3456
Q ss_pred HHHHhCCC-cEE-EEecCCC-CCCCCC---CCC----cccc---------cCCcchhhhhhcCcceEeccccc--cchhh
Q 044624 231 MALEASGK-NFI-WIVRPPI-GFDINS---EFR----ANDA---------DGTQSALEALSHGVPINGWPLAA--EQFYN 289 (358)
Q Consensus 231 ~al~~~~~-~~l-w~~~~~~-~~~~~~---~~~----~~wl---------gG~~s~~eal~~GvP~l~~P~~~--DQ~~n 289 (358)
++|...+. .++ |...... ....+. ... .+++ ||++|++|++++|+|++.+|..+ ||..|
T Consensus 205 ~~l~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~n 284 (321)
T TIGR00661 205 ELLGKIANVKFVCYSYEVAKNSYNENVEIRRITTDNFKELIKNAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNN 284 (321)
T ss_pred HHHHhCCCeEEEEeCCCCCccccCCCEEEEECChHHHHHHHHhCCEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHH
Confidence 66766553 444 2111110 111110 001 1111 99999999999999999999966 89999
Q ss_pred hhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 290 SNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 290 a~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|+.+++. |+|+.++. .++ ++.+++.++++|+
T Consensus 285 a~~l~~~-g~~~~l~~---~~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 285 AVKLEDL-GCGIALEY---KEL---RLLEAILDIRNMK 315 (321)
T ss_pred HHHHHHC-CCEEEcCh---hhH---HHHHHHHhccccc
Confidence 9999988 99999976 333 6666777777777
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=1.6e-14 Score=132.53 Aligned_cols=295 Identities=19% Similarity=0.157 Sum_probs=168.5
Q ss_pred cCCCcChHHHHHHHHHHHhCCCc-EEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHH
Q 044624 4 FMAQGHVIPFLALAHHLESTKNY-TIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKL 82 (358)
Q Consensus 4 ~p~~GH~~P~l~La~~L~~~rGh-~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
..+.||+.|-+.|+.+|.+ +|+ +|.++.+....+...... .++.+..++.. ++... ... ..+...
T Consensus 8 gGTGGHv~pAlAl~~~l~~-~g~~~v~~~~~~~~~e~~l~~~---~~~~~~~I~~~----~~~~~----~~~--~~~~~~ 73 (357)
T COG0707 8 GGTGGHVFPALALAEELAK-RGWEQVIVLGTGDGLEAFLVKQ---YGIEFELIPSG----GLRRK----GSL--KLLKAP 73 (357)
T ss_pred CCCccchhHHHHHHHHHHh-hCccEEEEecccccceeeeccc---cCceEEEEecc----ccccc----CcH--HHHHHH
Confidence 4577999999999999999 999 588886665554332211 46777766532 11111 010 001111
Q ss_pred HHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCcc--HHHHHHHhCCceEEEcchhHHHHHHHhhh-hc-cCCCCCC
Q 044624 83 LEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGW--CKEIAQEYGIFHAIFIEGGGFGFACYYSL-WV-DLPHRNT 158 (358)
Q Consensus 83 ~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~-~~-~~p~~~~ 158 (358)
+.. -......++++++. +||+||.-..++. +..+|..+|||.+.+-............. .. .+..
T Consensus 74 ~~~-~~~~~~a~~il~~~-------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~ank~~~~~a~~V~~--- 142 (357)
T COG0707 74 FKL-LKGVLQARKILKKL-------KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLANKILSKFAKKVAS--- 142 (357)
T ss_pred HHH-HHHHHHHHHHHHHc-------CCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchhHHHhHHhhceeee---
Confidence 111 12233456788888 9999999666654 34578888999998765432211111100 00 0000
Q ss_pred CCCccccCCCCCC-ccc--CcccccCCCCCCCCCCCCCChhHHHHHhhcCCCCceEEEEeccCCCCCHH-HHHHHHHHHH
Q 044624 159 DSDEFLLLDFPEA-STI--HPVLRFTGSKAGAGKEHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVS-QMVQLAMALE 234 (358)
Q Consensus 159 ~~~~~~~p~~~~~-~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~-~~~~~~~al~ 234 (358)
.......+.++. ... -|+.+.. .. .+..-.+ .+...++++|+|.=||.....-+ .+.+....+.
T Consensus 143 -~f~~~~~~~~~~~~~~tG~Pvr~~~---------~~-~~~~~~~-~~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~ 210 (357)
T COG0707 143 -AFPKLEAGVKPENVVVTGIPVRPEF---------EE-LPAAEVR-KDGRLDKKTILVTGGSQGAKALNDLVPEALAKLA 210 (357)
T ss_pred -ccccccccCCCCceEEecCcccHHh---------hc-cchhhhh-hhccCCCcEEEEECCcchhHHHHHHHHHHHHHhh
Confidence 000000000000 000 0111110 00 0111111 11111467999999998654333 3344555555
Q ss_pred hCCCcEEEEecCCC--C----CCCCC-----CCCc---ccc---------cCCcchhhhhhcCcceEeccc-c---ccch
Q 044624 235 ASGKNFIWIVRPPI--G----FDINS-----EFRA---NDA---------DGTQSALEALSHGVPINGWPL-A---AEQF 287 (358)
Q Consensus 235 ~~~~~~lw~~~~~~--~----~~~~~-----~~~~---~wl---------gG~~s~~eal~~GvP~l~~P~-~---~DQ~ 287 (358)
+ +..+++..+.+. . ..... .+.. .|+ .|.+|+.|..++|+|.+.+|. . .+|.
T Consensus 211 ~-~~~v~~~~G~~~~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~ 289 (357)
T COG0707 211 N-RIQVIHQTGKNDLEELKSAYNELGVVRVLPFIDDMAALLAAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQE 289 (357)
T ss_pred h-CeEEEEEcCcchHHHHHHHHhhcCcEEEeeHHhhHHHHHHhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHH
Confidence 4 467777776653 0 00000 1111 121 999999999999999999996 3 3899
Q ss_pred hhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044624 288 YNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEV 340 (358)
Q Consensus 288 ~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l 340 (358)
.||..++++ |.|..++. .++|.+.+.+.|.++++++++-+.|+++++.+
T Consensus 290 ~NA~~l~~~-gaa~~i~~---~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 290 YNAKFLEKA-GAALVIRQ---SELTPEKLAELILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred HHHHHHHhC-CCEEEecc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999999 99999986 67999999999999999863444666666655
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.44 E-value=2.7e-11 Score=112.93 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=60.6
Q ss_pred cCCcchhhhhhcCcceEeccc----cccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPL----AAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKD 337 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a 337 (358)
+|.++++||+++|+|+|+.|. .++|..|+..+.+. |.|+.+.. +++++++++++|.++++|+ .++++.
T Consensus 260 ~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~~---~~~~~~~l~~~i~~ll~~~----~~~~~~ 331 (357)
T PRK00726 260 AGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIPQ---SDLTPEKLAEKLLELLSDP----ERLEAM 331 (357)
T ss_pred CCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEEc---ccCCHHHHHHHHHHHHcCH----HHHHHH
Confidence 778999999999999999997 46899999999988 99999976 5678999999999999998 655444
Q ss_pred HH
Q 044624 338 LE 339 (358)
Q Consensus 338 ~~ 339 (358)
.+
T Consensus 332 ~~ 333 (357)
T PRK00726 332 AE 333 (357)
T ss_pred HH
Confidence 44
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.39 E-value=1e-10 Score=108.57 Aligned_cols=283 Identities=17% Similarity=0.156 Sum_probs=146.1
Q ss_pred CCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHHHH
Q 044624 5 MAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKLLE 84 (358)
Q Consensus 5 p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (358)
...||+...+.|++.|.+ +||+|++++....... ..... .++++..++.. +.... . .......+..
T Consensus 8 ~~gG~~~~~~~la~~l~~-~G~ev~v~~~~~~~~~-~~~~~--~~~~~~~~~~~----~~~~~----~--~~~~~~~~~~ 73 (350)
T cd03785 8 GTGGHIFPALALAEELRE-RGAEVLFLGTKRGLEA-RLVPK--AGIPLHTIPVG----GLRRK----G--SLKKLKAPFK 73 (350)
T ss_pred CchhhhhHHHHHHHHHHh-CCCEEEEEECCCcchh-hcccc--cCCceEEEEec----CcCCC----C--hHHHHHHHHH
Confidence 356999999999999999 9999999987643211 11000 35666666532 11100 0 0001111111
Q ss_pred HHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCc--cHHHHHHHhCCceEEEcchhHHHH-HHHhh--hhcc-CCCCCC
Q 044624 85 ATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFG--WCKEIAQEYGIFHAIFIEGGGFGF-ACYYS--LWVD-LPHRNT 158 (358)
Q Consensus 85 ~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~-~~~~~--~~~~-~p~~~~ 158 (358)
. ......+.+++++. +||+|++..... .+..+|...|+|++.......... ..... .... .+....
T Consensus 74 ~-~~~~~~~~~~i~~~-------~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~~~~~~~~~~~~~~~vi~~s~~~ 145 (350)
T cd03785 74 L-LKGVLQARKILKKF-------KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAVPGLANRLLARFADRVALSFPET 145 (350)
T ss_pred H-HHHHHHHHHHHHhc-------CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCCccHHHHHHHHhhCEEEEcchhh
Confidence 1 11223455666666 899999876432 345678888999987532211100 00000 0000 000000
Q ss_pred CCCccccCCCCCCcccCcccccCCCCCCCCCCCCCChhHHHHHhhcCCCCceEEEEeccCCCCCH-HHHHHHHHHHHhCC
Q 044624 159 DSDEFLLLDFPEASTIHPVLRFTGSKAGAGKEHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAV-SQMVQLAMALEASG 237 (358)
Q Consensus 159 ~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~-~~~~~~~~al~~~~ 237 (358)
.+ . .+. ..+. +.++ +.+... ... ... .+.+...+++.+|++..|+...... +.+.+.+..+...+
T Consensus 146 -~~-~-~~~--~~~~---~i~n-~v~~~~---~~~-~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~ 211 (350)
T cd03785 146 -AK-Y-FPK--DKAV---VTGN-PVREEI---LAL-DRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKR 211 (350)
T ss_pred -hh-c-CCC--CcEE---EECC-CCchHH---hhh-hhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccC
Confidence 00 0 000 0000 1111 100000 000 011 2222222334456655555532211 12234444454334
Q ss_pred CcEEEEecCCCC------CCCCCCC---------Ccccc---------cCCcchhhhhhcCcceEeccc----cccchhh
Q 044624 238 KNFIWIVRPPIG------FDINSEF---------RANDA---------DGTQSALEALSHGVPINGWPL----AAEQFYN 289 (358)
Q Consensus 238 ~~~lw~~~~~~~------~~~~~~~---------~~~wl---------gG~~s~~eal~~GvP~l~~P~----~~DQ~~n 289 (358)
..++|.++.... ....... ..+|+ +|.+|++||+++|+|+|+.|. ..+|..|
T Consensus 212 ~~~~~i~G~g~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~ 291 (350)
T cd03785 212 LQVIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQTAN 291 (350)
T ss_pred eEEEEEcCCccHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHh
Confidence 455666655320 0000000 11222 677899999999999999986 4578899
Q ss_pred hhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 290 SNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 290 a~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
+..+.+. |.|+.+.. ...+.+++.++|+++++|+
T Consensus 292 ~~~l~~~-g~g~~v~~---~~~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 292 ARALVKA-GAAVLIPQ---EELTPERLAAALLELLSDP 325 (350)
T ss_pred HHHHHhC-CCEEEEec---CCCCHHHHHHHHHHHhcCH
Confidence 9999988 99999975 4468999999999999887
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.31 E-value=5.1e-10 Score=103.83 Aligned_cols=62 Identities=21% Similarity=0.379 Sum_probs=53.9
Q ss_pred cCCcchhhhhhcCcceEecccc---ccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLA---AEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~---~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
+|.++++||+++|+|+|+.|+- .+|..|+..+.+. |.|..+.. ++.+++++.++++++++|+
T Consensus 258 ~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~~~---~~~~~~~l~~~i~~ll~~~ 322 (348)
T TIGR01133 258 AGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVIRQ---KELLPEKLLEALLKLLLDP 322 (348)
T ss_pred CChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEEec---ccCCHHHHHHHHHHHHcCH
Confidence 7778899999999999999873 4788899899877 99998875 5568999999999999988
No 35
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.29 E-value=5.7e-12 Score=101.02 Aligned_cols=123 Identities=16% Similarity=0.127 Sum_probs=77.4
Q ss_pred CcccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHH
Q 044624 1 MLPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVR 80 (358)
Q Consensus 1 ~~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
|.+.++.||++|++.|+++|++ |||+|++++++.+.+.+++ .|++|..++.+ ..++.. . ....
T Consensus 3 i~~~Gt~Ghv~P~lala~~L~~-rGh~V~~~~~~~~~~~v~~-----~Gl~~~~~~~~---~~~~~~------~--~~~~ 65 (139)
T PF03033_consen 3 IATGGTRGHVYPFLALARALRR-RGHEVRLATPPDFRERVEA-----AGLEFVPIPGD---SRLPRS------L--EPLA 65 (139)
T ss_dssp EEEESSHHHHHHHHHHHHHHHH-TT-EEEEEETGGGHHHHHH-----TT-EEEESSSC---GGGGHH------H--HHHH
T ss_pred EEEcCChhHHHHHHHHHHHHhc-cCCeEEEeecccceecccc-----cCceEEEecCC---cCcCcc------c--chhh
Confidence 4678999999999999999999 9999999999999999988 89999977621 000000 0 0001
Q ss_pred HHHHHHh--hchHHHHHHHHHHhhh-----cCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhH
Q 044624 81 KLLEATL--SFKPHFKKLIIDLIDE-----QNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGG 140 (358)
Q Consensus 81 ~~~~~~~--~~~~~l~~ll~~~~~~-----~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~ 140 (358)
.+..... .....+.+.+++.... .....+|+++.+.....+..+||++|||++.....+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 66 NLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred hhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 1110001 1112223333322110 1111468888888888889999999999999876653
No 36
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.18 E-value=2.8e-09 Score=95.70 Aligned_cols=231 Identities=19% Similarity=0.136 Sum_probs=123.8
Q ss_pred CCcChHHHHHHHHHHHhCCCcEEEEEeCCcch---hhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHH
Q 044624 6 AQGHVIPFLALAHHLESTKNYTIAFVNTHLNI---KKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKL 82 (358)
Q Consensus 6 ~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
+.||++=.+.||++|.+ +||+|+|++..... +.+.. .++.+..++.. . . ..
T Consensus 13 G~GHv~Rcl~LA~~l~~-~g~~v~f~~~~~~~~~~~~i~~-----~g~~v~~~~~~------~-~------~~------- 66 (279)
T TIGR03590 13 GLGHVMRCLTLARALHA-QGAEVAFACKPLPGDLIDLLLS-----AGFPVYELPDE------S-S------RY------- 66 (279)
T ss_pred cccHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHHHHH-----cCCeEEEecCC------C-c------hh-------
Confidence 78999999999999999 99999999987543 34444 67777766521 0 0 00
Q ss_pred HHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccH--HHHHHHhCCceEEEcchhHHHHHHHhhhhccCCCCCCCC
Q 044624 83 LEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWC--KEIAQEYGIFHAIFIEGGGFGFACYYSLWVDLPHRNTDS 160 (358)
Q Consensus 83 ~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~ 160 (358)
.-...+.+++++. +||+||+|.+.... ....+..+.+.+.+.-...... ..
T Consensus 67 -----~d~~~~~~~l~~~-------~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~~---------------~~ 119 (279)
T TIGR03590 67 -----DDALELINLLEEE-------KFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADRPH---------------DC 119 (279)
T ss_pred -----hhHHHHHHHHHhc-------CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCCCc---------------CC
Confidence 0112245666665 89999999976543 2334455666666543211000 00
Q ss_pred CccccCCC-CCCcccCcccccCCCCCCCCCCCCCChhHHHHHhhc---CCCCceEEEEeccCCCCCHHHHHHHHHHHHhC
Q 044624 161 DEFLLLDF-PEASTIHPVLRFTGSKAGAGKEHGISAELCKNWLDR---KPCRSVLYVSFGSQDTIAVSQMVQLAMALEAS 236 (358)
Q Consensus 161 ~~~~~p~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~wld~---~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~ 236 (358)
|.+..+.+ .....|....+.. .....|.......++....-.. .++.+.|+|+||...... ....++++|...
T Consensus 120 D~vin~~~~~~~~~y~~~~~~~-~~~l~G~~Y~~lr~eF~~~~~~~~~~~~~~~iLi~~GG~d~~~--~~~~~l~~l~~~ 196 (279)
T TIGR03590 120 DLLLDQNLGADASDYQGLVPAN-CRLLLGPSYALLREEFYQLATANKRRKPLRRVLVSFGGADPDN--LTLKLLSALAES 196 (279)
T ss_pred CEEEeCCCCcCHhHhcccCcCC-CeEEecchHHhhhHHHHHhhHhhhcccccCeEEEEeCCcCCcC--HHHHHHHHHhcc
Confidence 00000000 0000111111100 0000000011222222211111 112357999999665422 335566676654
Q ss_pred --CCcEEEEecCCCCCC-------CCCCC--Cc-------ccc---------cCCcchhhhhhcCcceEeccccccchhh
Q 044624 237 --GKNFIWIVRPPIGFD-------INSEF--RA-------NDA---------DGTQSALEALSHGVPINGWPLAAEQFYN 289 (358)
Q Consensus 237 --~~~~lw~~~~~~~~~-------~~~~~--~~-------~wl---------gG~~s~~eal~~GvP~l~~P~~~DQ~~n 289 (358)
+.++.+++++..... ..... .. +++ || +|+.|+++.|+|+|++|+..+|..|
T Consensus 197 ~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~ 275 (279)
T TIGR03590 197 QINISITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADLAIGAAG-STSWERCCLGLPSLAICLAENQQSN 275 (279)
T ss_pred ccCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCEEEECCc-hHHHHHHHcCCCEEEEEecccHHHH
Confidence 456777777642110 00001 11 111 77 9999999999999999999999999
Q ss_pred hhhh
Q 044624 290 SNLL 293 (358)
Q Consensus 290 a~~v 293 (358)
|+.+
T Consensus 276 a~~~ 279 (279)
T TIGR03590 276 SQQL 279 (279)
T ss_pred hhhC
Confidence 9753
No 37
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.17 E-value=8.8e-10 Score=103.59 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=52.4
Q ss_pred cCCcchhhhhhcCcceEec----cccc---------cchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGW----PLAA---------EQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~----P~~~---------DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
.|..|+ |++++|+|+|++ |+.. +|..|+..++++ ++..++.. ...|++.|.+.+.++|+|+
T Consensus 275 SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~-~~~pel~q---~~~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 275 SGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANR-LLVPELLQ---EECTPHPLAIALLLLLENG 348 (385)
T ss_pred CCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCC-ccchhhcC---CCCCHHHHHHHHHHHhcCC
Confidence 677666 999999999999 7632 288899999988 99888865 6799999999999999876
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.85 E-value=9.5e-08 Score=89.85 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=57.3
Q ss_pred CCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHHHH
Q 044624 5 MAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKLLE 84 (358)
Q Consensus 5 p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (358)
...||+.|-+ ++++|.+ +++++.++..... .++..... ..++++.++.. ++ ...+..+ .
T Consensus 10 gt~G~i~~a~-l~~~L~~-~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~l~~~----g~-----------~~~~~~~-~ 68 (380)
T PRK00025 10 EVSGDLLGAG-LIRALKA-RAPNLEFVGVGGP--RMQAAGCE-SLFDMEELAVM----GL-----------VEVLPRL-P 68 (380)
T ss_pred CcCHHHHHHH-HHHHHHh-cCCCcEEEEEccH--HHHhCCCc-cccCHHHhhhc----cH-----------HHHHHHH-H
Confidence 4569999998 9999999 9888888875432 23331110 12222222110 00 0111111 1
Q ss_pred HHhhchHHHHHHHHHHhhhcCCCCCcEEEECCC-CccH--HHHHHHhCCceEEEc
Q 044624 85 ATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMF-FGWC--KEIAQEYGIFHAIFI 136 (358)
Q Consensus 85 ~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~-~~~~--~~~A~~lgiP~v~~~ 136 (358)
.+......++++++++ +||+|+.-.. ..+. ...|.+.|||++.+.
T Consensus 69 ~~~~~~~~~~~~l~~~-------kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~ 116 (380)
T PRK00025 69 RLLKIRRRLKRRLLAE-------PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYV 116 (380)
T ss_pred HHHHHHHHHHHHHHHc-------CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEe
Confidence 1122344567777777 8999876322 2233 334678899988763
No 39
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=98.80 E-value=2e-07 Score=87.64 Aligned_cols=111 Identities=15% Similarity=0.276 Sum_probs=72.9
Q ss_pred CCceEEEEeccCCCCCHHHHHHHHHHHHhC-CCcEEEEecCCCC----C----CCCC------CC---Ccccc-------
Q 044624 207 CRSVLYVSFGSQDTIAVSQMVQLAMALEAS-GKNFIWIVRPPIG----F----DINS------EF---RANDA------- 261 (358)
Q Consensus 207 ~~~vvyvs~GS~~~~~~~~~~~~~~al~~~-~~~~lw~~~~~~~----~----~~~~------~~---~~~wl------- 261 (358)
+++++++.-|+.... ..+..+++++.+. +.+++++.+.+.. + .... ++ ..+++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v 278 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMI 278 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEE
Confidence 345777766776432 2345666666654 4567776653210 0 0000 00 01111
Q ss_pred --cCCcchhhhhhcCcceEec-cccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 --DGTQSALEALSHGVPINGW-PLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 --gG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
.|..|+.||+++|+|+|+. |..+.|..|+..+.+. |.|+... +.+++.++|.++++|+
T Consensus 279 ~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~~-------~~~~l~~~i~~ll~~~ 339 (380)
T PRK13609 279 TKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVIR-------DDEEVFAKTEALLQDD 339 (380)
T ss_pred eCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEEC-------CHHHHHHHHHHHHCCH
Confidence 5667889999999999985 6777788899988877 8887542 4689999999999988
No 40
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.58 E-value=2.8e-06 Score=75.76 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=64.3
Q ss_pred cCCcchhhhhhcCcceEeccccc---cchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCC------CCHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAA---EQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETE------KGKP 332 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~---DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~------~~~~ 332 (358)
||+||++|=|++|+|-|++|... +|-.-|.|+++. |.-=.+.. .++|++.++++|...++-|. .-+.
T Consensus 302 ~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~L-GL~dvL~p---e~lt~~~La~al~~~l~~P~~~~~~L~L~G 377 (400)
T COG4671 302 GGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEEL-GLVDVLLP---ENLTPQNLADALKAALARPSPSKPHLDLEG 377 (400)
T ss_pred ccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhc-CcceeeCc---ccCChHHHHHHHHhcccCCCCCccccCchh
Confidence 99999999999999999999855 999999999866 88767766 78999999999999998441 1113
Q ss_pred HHHHHHHHHHHHHHh
Q 044624 333 MRMKDLEVKEIIDNA 347 (358)
Q Consensus 333 ~r~~a~~l~~~~~~a 347 (358)
...-++.+++.+...
T Consensus 378 ~~~~a~~l~e~L~~~ 392 (400)
T COG4671 378 LEHIARILAELLSTR 392 (400)
T ss_pred hHhHHHHHHHHhhhh
Confidence 445555555555443
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=98.55 E-value=2.2e-06 Score=80.91 Aligned_cols=124 Identities=14% Similarity=0.134 Sum_probs=80.1
Q ss_pred CCceEEEEeccCCCCCHHHHHHHHHHHHh--CCCcEEEEecCCCC----CC----CC-C----CCC---cccc-------
Q 044624 207 CRSVLYVSFGSQDTIAVSQMVQLAMALEA--SGKNFIWIVRPPIG----FD----IN-S----EFR---ANDA------- 261 (358)
Q Consensus 207 ~~~vvyvs~GS~~~~~~~~~~~~~~al~~--~~~~~lw~~~~~~~----~~----~~-~----~~~---~~wl------- 261 (358)
+++++++..|+.... ..+..+++++.+ .+.+++++.+.+.. +. .. . ++. .+|.
T Consensus 201 ~~~~ilv~~G~lg~~--k~~~~li~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aDl~I 278 (391)
T PRK13608 201 DKQTILMSAGAFGVS--KGFDTMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMASSQLMI 278 (391)
T ss_pred CCCEEEEECCCcccc--hhHHHHHHHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHHHhhhEEE
Confidence 456888888887531 234444444332 24567666664421 10 00 0 011 1121
Q ss_pred --cCCcchhhhhhcCcceEec-cccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 044624 262 --DGTQSALEALSHGVPINGW-PLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDL 338 (358)
Q Consensus 262 --gG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~ 338 (358)
.|-.|+.||+++|+|+|+. |.-+.|-.|+..+.+. |+|+... +.+++.++|.++++|++.-+.++++++
T Consensus 279 ~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~-------~~~~l~~~i~~ll~~~~~~~~m~~~~~ 350 (391)
T PRK13608 279 TKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD-------TPEEAIKIVASLTNGNEQLTNMISTME 350 (391)
T ss_pred eCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC-------CHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5556899999999999998 6666677999999988 9997753 578899999999988733445666655
Q ss_pred HH
Q 044624 339 EV 340 (358)
Q Consensus 339 ~l 340 (358)
++
T Consensus 351 ~~ 352 (391)
T PRK13608 351 QD 352 (391)
T ss_pred Hh
Confidence 54
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=98.54 E-value=1.7e-08 Score=83.56 Aligned_cols=62 Identities=24% Similarity=0.321 Sum_probs=52.4
Q ss_pred cCCcchhhhhhcCcceEeccccc----cchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAA----EQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~----DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
||.||++|++++|+|+|++|... +|..||..+++. |.|+.+.. ...+.+.|.++|.+++.++
T Consensus 80 aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~---~~~~~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 80 AGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDE---SELNPEELAEAIEELLSDP 145 (167)
T ss_dssp S-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSEC---CC-SCCCHHHHHHCHCCCH
T ss_pred CCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCc---ccCCHHHHHHHHHHHHcCc
Confidence 99999999999999999999988 999999999998 99999876 5677999999999999887
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.54 E-value=4.5e-05 Score=70.37 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=44.3
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|..++++||+++|+|+|+.+..+ +...+.+. +.|..++. -+.+++.++|.+++.|+
T Consensus 278 ~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~-~~g~~~~~-----~~~~~l~~~i~~l~~~~ 333 (364)
T cd03814 278 TFGLVVLEAMASGLPVVAPDAGG----PADIVTDG-ENGLLVEP-----GDAEAFAAALAALLADP 333 (364)
T ss_pred cCCcHHHHHHHcCCCEEEcCCCC----chhhhcCC-cceEEcCC-----CCHHHHHHHHHHHHcCH
Confidence 55688999999999999887554 44555555 78887764 56788999999999998
No 44
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.46 E-value=8.8e-05 Score=68.33 Aligned_cols=289 Identities=15% Similarity=0.135 Sum_probs=159.0
Q ss_pred CCCcChHHHHHHHHHHHhCC--CcEEEEEe-CCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHH
Q 044624 5 MAQGHVIPFLALAHHLESTK--NYTIAFVN-THLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRK 81 (358)
Q Consensus 5 p~~GH~~P~l~La~~L~~~r--Gh~Vt~~t-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (358)
.+.|-++-.++|-++|.+ + ++.+++-| |+...+.+....+ ..+....+|++
T Consensus 57 aSVGEv~a~~pLv~~l~~-~~P~~~ilvTt~T~Tg~e~a~~~~~--~~v~h~YlP~D----------------------- 110 (419)
T COG1519 57 ASVGEVLAALPLVRALRE-RFPDLRILVTTMTPTGAERAAALFG--DSVIHQYLPLD----------------------- 110 (419)
T ss_pred cchhHHHHHHHHHHHHHH-hCCCCCEEEEecCccHHHHHHHHcC--CCeEEEecCcC-----------------------
Confidence 467889999999999999 7 88988888 6666666665433 34555555532
Q ss_pred HHHHHhhchHHHHHHHHHHhhhcCCCCCcE-EEECCCCcc-HHHHHHHhCCceEEEcch----hHHHHHHHh----hhhc
Q 044624 82 LLEATLSFKPHFKKLIIDLIDEQNGHKPLC-IITDMFFGW-CKEIAQEYGIFHAIFIEG----GGFGFACYY----SLWV 151 (358)
Q Consensus 82 ~~~~~~~~~~~l~~ll~~~~~~~~~~~pd~-vV~D~~~~~-~~~~A~~lgiP~v~~~~~----~~~~~~~~~----~~~~ 151 (358)
....++..++.+ +||+ ||++.-+|. ...-+++.|||.+.+.-- +...+.... .+..
T Consensus 111 -------~~~~v~rFl~~~-------~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~ 176 (419)
T COG1519 111 -------LPIAVRRFLRKW-------RPKLLIIMETELWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFK 176 (419)
T ss_pred -------chHHHHHHHHhc-------CCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHH
Confidence 112345677778 8875 555554443 356778999999886421 111111000 0000
Q ss_pred cCCCC--CCCCCccccCCCCCCcccCcccccCCCCCCCCCCCCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHH
Q 044624 152 DLPHR--NTDSDEFLLLDFPEASTIHPVLRFTGSKAGAGKEHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQL 229 (358)
Q Consensus 152 ~~p~~--~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~ 229 (358)
.+... ....|.-.+- .+...++.-. |-....-.+..........|-..-+....+.|.-+|. ....+.+.+.
T Consensus 177 ~i~li~aQse~D~~Rf~----~LGa~~v~v~-GNlKfd~~~~~~~~~~~~~~r~~l~~~r~v~iaaSTH-~GEeei~l~~ 250 (419)
T COG1519 177 NIDLILAQSEEDAQRFR----SLGAKPVVVT-GNLKFDIEPPPQLAAELAALRRQLGGHRPVWVAASTH-EGEEEIILDA 250 (419)
T ss_pred hcceeeecCHHHHHHHH----hcCCcceEEe-cceeecCCCChhhHHHHHHHHHhcCCCCceEEEecCC-CchHHHHHHH
Confidence 00000 0000000000 0111232221 2211100011112222223322212212466666663 2234445566
Q ss_pred HHHHHhC--CCcEEEEecCCCCCCC--------------CC-------C-C--Ccc-------c--------c-------
Q 044624 230 AMALEAS--GKNFIWIVRPPIGFDI--------------NS-------E-F--RAN-------D--------A------- 261 (358)
Q Consensus 230 ~~al~~~--~~~~lw~~~~~~~~~~--------------~~-------~-~--~~~-------w--------l------- 261 (358)
..+|.+. +...||+=|=++.+.. .+ . . +.+ + +
T Consensus 251 ~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~ 330 (419)
T COG1519 251 HQALKKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPI 330 (419)
T ss_pred HHHHHhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCC
Confidence 6666654 3456666543221100 00 0 0 000 0 0
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVK 341 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~ 341 (358)
||.| .+|+.++|+|++.=|....|.+.++++.+. |.|+.++. ++.+.+++..+++|+.+.+.|.+++.++-
T Consensus 331 GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga~~~v~~-------~~~l~~~v~~l~~~~~~r~~~~~~~~~~v 401 (419)
T COG1519 331 GGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQA-GAGLQVED-------ADLLAKAVELLLADEDKREAYGRAGLEFL 401 (419)
T ss_pred CCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhc-CCeEEECC-------HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 6665 789999999999999999999999999999 99999962 89999999999998744556666666666
Q ss_pred HHHHHhh
Q 044624 342 EIIDNAF 348 (358)
Q Consensus 342 ~~~~~a~ 348 (358)
+..+.|.
T Consensus 402 ~~~~gal 408 (419)
T COG1519 402 AQNRGAL 408 (419)
T ss_pred HHhhHHH
Confidence 6555544
No 45
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.42 E-value=3.8e-05 Score=72.68 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=46.5
Q ss_pred cchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044624 265 QSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEV 340 (358)
Q Consensus 265 ~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l 340 (358)
++++||+++|+|+|+.. ...+...+.+. ..|+.++. -++++++++|.++++|++..+.+.+++++.
T Consensus 315 ~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~~-----~d~~~la~~i~~ll~~~~~~~~l~~~ar~~ 380 (396)
T cd03818 315 WSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVDF-----FDPDALAAAVIELLDDPARRARLRRAARRT 380 (396)
T ss_pred hHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcCC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 48999999999999864 34455555444 56777764 468999999999999882233445555443
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.42 E-value=4.7e-05 Score=70.07 Aligned_cols=68 Identities=15% Similarity=0.060 Sum_probs=47.8
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLE 339 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~ 339 (358)
|.-.+++||+++|+|+|+.+. ..+...+.+. +.|..++. -+.+++.+++.++++|++..+.+++++++
T Consensus 275 ~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-----~d~~~l~~~i~~l~~~~~~~~~~~~~~~~ 342 (359)
T cd03823 275 NFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPP-----GDAEDLAAALERLIDDPDLLERLRAGIEP 342 (359)
T ss_pred CCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECC-----CCHHHHHHHHHHHHhChHHHHHHHHhHHH
Confidence 444579999999999998654 3455556544 57888764 45899999999999988333344444433
No 47
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=98.39 E-value=2.1e-05 Score=74.03 Aligned_cols=70 Identities=20% Similarity=0.148 Sum_probs=54.1
Q ss_pred cCCcchhhhhhcCcceEeccccccch-hhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcC-CCCCHHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQF-YNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNE-TEKGKPMRMKDLE 339 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~-~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~-~~~~~~~r~~a~~ 339 (358)
+|-+|++||+++|+|+|+.+....|. .|+..+.+. |.|+.+ -+++++.++|.++++| ++..+.+++++++
T Consensus 290 ~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~-------~~~~~la~~i~~ll~~~~~~~~~m~~~~~~ 361 (382)
T PLN02605 290 AGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS-------ESPKEIARIVAEWFGDKSDELEAMSENALK 361 (382)
T ss_pred CCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec-------CCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66689999999999999998777776 689889887 998755 2589999999999988 5222234444443
No 48
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.36 E-value=4.5e-05 Score=72.90 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=55.3
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVK 341 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~ 341 (358)
+|..+++||+++|+|+|+-|..+++......+.+. |.++... ++++++++|.++++|++..+.+.++|++..
T Consensus 332 ~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~~-------d~~~La~~l~~ll~~~~~~~~m~~~a~~~~ 403 (425)
T PRK05749 332 RGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQVE-------DAEDLAKAVTYLLTDPDARQAYGEAGVAFL 403 (425)
T ss_pred CCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEEC-------CHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 44557999999999999999988888888777666 7666542 479999999999998833344555555544
Q ss_pred H
Q 044624 342 E 342 (358)
Q Consensus 342 ~ 342 (358)
+
T Consensus 404 ~ 404 (425)
T PRK05749 404 K 404 (425)
T ss_pred H
Confidence 3
No 49
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.31 E-value=0.00038 Score=65.43 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=46.8
Q ss_pred CcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044624 264 TQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLE 339 (358)
Q Consensus 264 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~ 339 (358)
-.+++||+++|+|+|+-...+ +...+.+. +.|..++. -+.++++++|.++++|+++.+.+.+++++
T Consensus 316 ~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~-~~g~~~~~-----~~~~~l~~~i~~l~~~~~~~~~~~~~a~~ 381 (398)
T cd03800 316 GLTALEAMACGLPVVATAVGG----PRDIVVDG-VTGLLVDP-----RDPEALAAALRRLLTDPALRRRLSRAGLR 381 (398)
T ss_pred CcHHHHHHhcCCCEEECCCCC----HHHHccCC-CCeEEeCC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 368999999999999876433 44455554 68888864 46899999999999987222234444443
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.30 E-value=0.00022 Score=66.09 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=44.8
Q ss_pred chhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044624 266 SALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLE 339 (358)
Q Consensus 266 s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~ 339 (358)
+++||+++|+|+|+.+..+.+.. +.+. +.|..++. -+.++++++|.++++|+++.+.+++++++
T Consensus 315 ~~~Ea~~~G~pvi~~~~~~~~~~----~~~~-~~g~~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 378 (394)
T cd03794 315 KLFEYMAAGKPVLASVDGESAEL----VEEA-GAGLVVPP-----GDPEALAAAILELLDDPEERAEMGENGRR 378 (394)
T ss_pred HHHHHHHCCCcEEEecCCCchhh----hccC-CcceEeCC-----CCHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 47999999999999887665433 3233 56777764 37899999999999888323334444443
No 51
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.29 E-value=0.00024 Score=68.75 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=45.8
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhc---cccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGE---EVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDL 338 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~---~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~ 338 (358)
|--++++||+++|+|+|+....+ ....+.+ . +.|..++. -+.++++++|.++++|++..+++.++++
T Consensus 343 ~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~-~~G~lv~~-----~d~~~la~~i~~ll~~~~~~~~~~~~a~ 412 (465)
T PLN02871 343 TLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEG-KTGFLYTP-----GDVDDCVEKLETLLADPELRERMGAAAR 412 (465)
T ss_pred ccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCC-CceEEeCC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 43458999999999999876432 2223333 4 67888864 4679999999999998822223444444
Q ss_pred H
Q 044624 339 E 339 (358)
Q Consensus 339 ~ 339 (358)
+
T Consensus 413 ~ 413 (465)
T PLN02871 413 E 413 (465)
T ss_pred H
Confidence 3
No 52
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.27 E-value=0.00047 Score=63.72 Aligned_cols=70 Identities=14% Similarity=0.026 Sum_probs=45.8
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhc-CCCCCHHHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMN-ETEKGKPMRMKDLEV 340 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~-~~~~~~~~r~~a~~l 340 (358)
|.-++++||+++|+|+|+.-.. .+...+.+. +.|..++. -+.+++.++|..++. ++++.++++++|++.
T Consensus 276 ~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~ 345 (355)
T cd03819 276 AFGRTAVEAQAMGRPVIASDHG----GARETVRPG-ETGLLVPP-----GDAEALAQALDQILSLLPEGRAKMFAKARMC 345 (355)
T ss_pred CCchHHHHHHhcCCCEEEcCCC----CcHHHHhCC-CceEEeCC-----CCHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 3446999999999999986533 334444443 47877764 578999999976554 552333455555554
Q ss_pred H
Q 044624 341 K 341 (358)
Q Consensus 341 ~ 341 (358)
.
T Consensus 346 ~ 346 (355)
T cd03819 346 V 346 (355)
T ss_pred H
Confidence 4
No 53
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.19 E-value=5.9e-05 Score=65.45 Aligned_cols=257 Identities=19% Similarity=0.129 Sum_probs=146.5
Q ss_pred CCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHHHH
Q 044624 5 MAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKLLE 84 (358)
Q Consensus 5 p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (358)
-+.||+.-++.||++|.+ +|..++|++.+....-+-+ + +++..... .
T Consensus 13 iGmGHV~R~l~LA~~l~k-~~~~~~fl~k~~~e~~~~~----------~-------~~~f~~~~------~--------- 59 (318)
T COG3980 13 IGMGHVMRTLTLARELEK-RGFACLFLTKQDIEAIIHK----------V-------YEGFKVLE------G--------- 59 (318)
T ss_pred cCcchhhhHHHHHHHHHh-cCceEEEecccchhhhhhh----------h-------hhhcccee------e---------
Confidence 478999999999999999 9999999998754321111 0 00110000 0
Q ss_pred HHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHH---HHHHHhCCceEEEcchhHHHHHHHh-hhhccCCCCCCCC
Q 044624 85 ATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCK---EIAQEYGIFHAIFIEGGGFGFACYY-SLWVDLPHRNTDS 160 (358)
Q Consensus 85 ~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~---~~A~~lgiP~v~~~~~~~~~~~~~~-~~~~~~p~~~~~~ 160 (358)
+.. ..+.+. ++|++|.|.....+- .+.++.+.+.+.|-.-....+.... ...... + ..
T Consensus 60 --~~~-----n~ik~~-------k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~d~d~ivN~~~---~-a~ 121 (318)
T COG3980 60 --RGN-----NLIKEE-------KFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFKDNDLIVNAIL---N-AN 121 (318)
T ss_pred --ecc-----cccccc-------cCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchhhhHhhhhhhh---c-ch
Confidence 000 034444 899999999887653 4777899999998754332221000 000000 0 00
Q ss_pred CccccCCCCCCcccCcccccCCCCCCCCCCCCCChhHHHH----HhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhC
Q 044624 161 DEFLLLDFPEASTIHPVLRFTGSKAGAGKEHGISAELCKN----WLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEAS 236 (358)
Q Consensus 161 ~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~ 236 (358)
+. .--.|...++ .. |+. ....+++... -+.+ +..-|+||||-.. +....-.++..|+.-
T Consensus 122 ~~--y~~v~~k~~~----~l-Gp~------y~~lr~eF~~~r~~~~~r--~~r~ilI~lGGsD--pk~lt~kvl~~L~~~ 184 (318)
T COG3980 122 DY--YGLVPNKTRY----YL-GPG------YAPLRPEFYALREENTER--PKRDILITLGGSD--PKNLTLKVLAELEQK 184 (318)
T ss_pred hh--ccccCcceEE----Ee-cCC------ceeccHHHHHhHHHHhhc--chheEEEEccCCC--hhhhHHHHHHHhhcc
Confidence 00 0001111110 00 111 0111121111 1221 2235899998542 223445677777766
Q ss_pred CCcEEEEecCCC-CCCCCC------CC---------Cccc------c--cCCcchhhhhhcCcceEeccccccchhhhhh
Q 044624 237 GKNFIWIVRPPI-GFDINS------EF---------RAND------A--DGTQSALEALSHGVPINGWPLAAEQFYNSNL 292 (358)
Q Consensus 237 ~~~~lw~~~~~~-~~~~~~------~~---------~~~w------l--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 292 (358)
+..+-.+++... .+.... .. ..+. + .|.-|+.|++.-|+|.+++|+...|---|..
T Consensus 185 ~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~aI~AaGstlyEa~~lgvP~l~l~~a~NQ~~~a~~ 264 (318)
T COG3980 185 NVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADLAISAAGSTLYEALLLGVPSLVLPLAENQIATAKE 264 (318)
T ss_pred CeeEEEEecCCCcchhHHHHHHhhCCCeeeEecchhHHHHHHhcchheeccchHHHHHHHhcCCceEEeeeccHHHHHHH
Confidence 655556665321 000000 00 0000 1 5667899999999999999999999999999
Q ss_pred hhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 044624 293 LGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDL 338 (358)
Q Consensus 293 v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~ 338 (358)
.+.. |+-..+.. .++.+.+..-+.+++.|. ..|++.-
T Consensus 265 f~~l-g~~~~l~~----~l~~~~~~~~~~~i~~d~----~~rk~l~ 301 (318)
T COG3980 265 FEAL-GIIKQLGY----HLKDLAKDYEILQIQKDY----ARRKNLS 301 (318)
T ss_pred HHhc-CchhhccC----CCchHHHHHHHHHhhhCH----HHhhhhh
Confidence 9877 88777765 478888899999999988 5555543
No 54
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.18 E-value=0.00045 Score=64.33 Aligned_cols=69 Identities=14% Similarity=-0.017 Sum_probs=48.5
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEV 340 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l 340 (358)
|.-.+++||+++|+|+|+... ......+.+. ..|..++. -+.+++.+++.++++|++..+++++++++.
T Consensus 282 ~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~-----~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 282 SFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDV-----GDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred CCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 445699999999999998643 3455555544 56776654 467999999999999872233455555554
No 55
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.17 E-value=0.00023 Score=65.63 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=50.3
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVK 341 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~ 341 (358)
+.-++++||+++|+|+|+... ...+..+.+. +.|..++. .. . ++.+++.+++++++..+.+++++++..
T Consensus 290 ~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~---~~--~-~~~~~i~~l~~~~~~~~~~~~~~~~~~ 358 (374)
T cd03817 290 TQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPP---GD--E-ALAEALLRLLQDPELRRRLSKNAEESA 358 (374)
T ss_pred CcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCC---CC--H-HHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 445789999999999998653 3455556555 67887764 12 2 899999999999833334666666655
Q ss_pred HHH
Q 044624 342 EII 344 (358)
Q Consensus 342 ~~~ 344 (358)
+..
T Consensus 359 ~~~ 361 (374)
T cd03817 359 EKF 361 (374)
T ss_pred HHH
Confidence 543
No 56
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.13 E-value=0.00013 Score=66.48 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=42.7
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhcccc-ceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVG-VCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|.-++++||+++|+|+|+.+..+.+ ..+.+. + .|..++. -+.++++++|.++++|+
T Consensus 264 ~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~-----~~~~~~~~~i~~ll~~~ 320 (348)
T cd03820 264 GFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPN-----GDVEALAEALLRLMEDE 320 (348)
T ss_pred ccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCC-----CCHHHHHHHHHHHHcCH
Confidence 4457899999999999987654433 334445 4 7877764 56799999999999998
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.07 E-value=0.00098 Score=60.92 Aligned_cols=56 Identities=16% Similarity=0.061 Sum_probs=42.5
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|--++++||+++|+|+|+-+.. .+...+.+. +.|..++. -+.+++.++|.+++.|+
T Consensus 275 ~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~~~~-----~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 275 GLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFLVPP-----GDAEALADAIERLIEDP 330 (359)
T ss_pred CcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEEECC-----CCHHHHHHHHHHHHhCH
Confidence 4467899999999999986543 334445444 67877764 46899999999999988
No 58
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.04 E-value=0.00035 Score=66.03 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=47.5
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhcc---ccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEE---VGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDL 338 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~---~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~ 338 (358)
.|..| .|+...|+|+|.+|.-.-|. |+...++. .|.++.+. ..+.+.+.+++.++++|+ ..+++..
T Consensus 304 SGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~-----~~~~~~l~~~l~~ll~d~----~~~~~~~ 372 (396)
T TIGR03492 304 AGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLA-----SKNPEQAAQVVRQLLADP----ELLERCR 372 (396)
T ss_pred cCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecC-----CCCHHHHHHHHHHHHcCH----HHHHHHH
Confidence 66544 99999999999999655565 98766542 15555554 245599999999999988 5554433
No 59
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.01 E-value=0.0025 Score=60.73 Aligned_cols=65 Identities=9% Similarity=0.110 Sum_probs=46.9
Q ss_pred cchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcC---CCCCHHHHHHHHHHH
Q 044624 265 QSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNE---TEKGKPMRMKDLEVK 341 (358)
Q Consensus 265 ~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~---~~~~~~~r~~a~~l~ 341 (358)
++++||+++|+|+|+... ......+.+. +.|+.++ +.++++++|.++++| +++.+.|.+++++..
T Consensus 332 ~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv~-------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 332 MKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVFG-------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEEC-------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 468999999999998653 3444455444 6787762 579999999999998 534456666666544
No 60
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=97.93 E-value=0.0019 Score=61.15 Aligned_cols=69 Identities=12% Similarity=0.025 Sum_probs=47.1
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEV 340 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l 340 (358)
|.-.+++||+++|+|+|+.... .....+.+. +.|+.++. -+.++++++|.++++|++..+.+++++++.
T Consensus 314 ~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~-----~d~~~la~~i~~~l~~~~~~~~~~~~~~~~ 382 (405)
T TIGR03449 314 SFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVDG-----HDPADWADALARLLDDPRTRIRMGAAAVEH 382 (405)
T ss_pred CcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECCC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3345899999999999986543 333444444 56777754 468999999999999872233445555443
No 61
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.89 E-value=0.003 Score=58.25 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=46.7
Q ss_pred CcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044624 264 TQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEV 340 (358)
Q Consensus 264 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l 340 (358)
-.+++||+++|+|+|+....+....... +. +.|..++. -+.+++.++|.++++|+++.+.+++++++.
T Consensus 279 g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~-----~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 346 (357)
T cd03795 279 GIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPP-----GDPAALAEAIRRLLEDPELRERLGEAARER 346 (357)
T ss_pred chHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCC-----CCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 3479999999999999765554433322 24 66777754 468999999999999983333444444443
No 62
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=97.88 E-value=0.0021 Score=59.50 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=41.6
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|..++++||+++|+|+|+.... .....+.+. +.|+.++. .+.+++.+++.++++|+
T Consensus 276 ~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~~-----~~~~~~~~~l~~l~~~~ 331 (365)
T cd03825 276 NFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAKP-----GDPEDLAEGIEWLLADP 331 (365)
T ss_pred cccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeCC-----CCHHHHHHHHHHHHhCH
Confidence 6668999999999999986542 223334333 56777654 56899999999999988
No 63
>PRK10307 putative glycosyl transferase; Provisional
Probab=97.79 E-value=0.018 Score=54.73 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=44.6
Q ss_pred chhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044624 266 SALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVK 341 (358)
Q Consensus 266 s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~ 341 (358)
.+.|++++|+|+|+...-+.. ....+ + +.|+.++. -+.++++++|.++++|++..+.+++++++..
T Consensus 323 kl~eama~G~PVi~s~~~g~~--~~~~i-~--~~G~~~~~-----~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~ 388 (412)
T PRK10307 323 KLTNMLASGRNVVATAEPGTE--LGQLV-E--GIGVCVEP-----ESVEALVAAIAALARQALLRPKLGTVAREYA 388 (412)
T ss_pred HHHHHHHcCCCEEEEeCCCch--HHHHH-h--CCcEEeCC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 368999999999998754321 11122 2 56777764 4689999999999988733445666666543
No 64
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=97.73 E-value=0.014 Score=53.37 Aligned_cols=56 Identities=14% Similarity=0.088 Sum_probs=43.2
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|.-++++||+++|+|+|+-+.. .....+.+. +.|..++. -+.+++.+++.++++++
T Consensus 290 ~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~~~-----~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 290 GFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLVPP-----GDPEALAEAILRLLADP 345 (377)
T ss_pred cCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEECC-----CCHHHHHHHHHHHhcCc
Confidence 6667899999999999986543 344455444 66777764 57899999999999998
No 65
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=97.73 E-value=0.013 Score=61.00 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=45.5
Q ss_pred CcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044624 264 TQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLE 339 (358)
Q Consensus 264 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~ 339 (358)
-.+++||+++|+|+|+-...+ ....+... ..|+.++. -++++++++|.++++|+...+.|.+++++
T Consensus 585 GLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLVdP-----~D~eaLA~AL~~LL~Dpelr~~m~~~gr~ 650 (1050)
T TIGR02468 585 GLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLVDP-----HDQQAIADALLKLVADKQLWAECRQNGLK 650 (1050)
T ss_pred CHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEECC-----CCHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 368999999999999986543 22223222 45877764 56899999999999998223345555444
No 66
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.73 E-value=0.016 Score=52.92 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=44.2
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|.-++++||+++|+|+|+.+. ..+...+.+. +.|+.++. .+.+++.++|.++++|+
T Consensus 287 ~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~-----~~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 287 GFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP-----GDPEALAEAILRLLDDP 342 (374)
T ss_pred cccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC-----CCHHHHHHHHHHHHcCh
Confidence 566789999999999998765 3455555545 77887764 45899999999999988
No 67
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=97.70 E-value=0.0045 Score=57.12 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=38.4
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|.-++++||+++|+|+|+. |...+...+.+. |..+.. -+.+++++++.++++++
T Consensus 274 ~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~---g~~~~~-----~~~~~~~~~i~~ll~~~ 327 (360)
T cd04951 274 GFGLVVAEAMACELPVVAT----DAGGVREVVGDS---GLIVPI-----SDPEALANKIDEILKMS 327 (360)
T ss_pred CCChHHHHHHHcCCCEEEe----cCCChhhEecCC---ceEeCC-----CCHHHHHHHHHHHHhCC
Confidence 4456889999999999874 445555555543 444443 46889999999999543
No 68
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=97.65 E-value=0.012 Score=55.33 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=45.4
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLE 339 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~ 339 (358)
|--.+++||+++|+|+|+.-..+ ....+.+. +.|..++ .+.++++++|.+++++++..+.+++++++
T Consensus 311 ~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~-~~g~~~~------~~~~~~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 311 HFGIVPLEAMYAGKPVIACNSGG----PLETVVDG-ETGFLCE------PTPEEFAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred CCCchHHHHHHcCCCEEEECCCC----cHHHhccC-CceEEeC------CCHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 33368899999999999974432 33344443 5676664 26899999999999988333345555544
No 69
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=97.64 E-value=0.013 Score=53.62 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=40.1
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|.-++++||+++|+|+|+-. ...+...+.+ .|..++. -+.+++.+++.++++|+
T Consensus 280 ~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~---~g~~~~~-----~~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 280 GFPNVLLEAMACGLPVVATD----VGDNAELVGD---TGFLVPP-----GDPEALAEAIEALLADP 333 (365)
T ss_pred cCCcHHHHHHhcCCCEEEcC----CCChHHHhhc---CCEEeCC-----CCHHHHHHHHHHHHhCh
Confidence 55689999999999999854 3344444443 4555553 35899999999999987
No 70
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=97.63 E-value=0.0066 Score=55.15 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=39.6
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHH---HHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHI---VVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l---~~ai~~ll~~~ 327 (358)
|.-++++||+++|+|+|+-... .....+.+. +.|+..+. -+.+.+ ..++.++++++
T Consensus 275 ~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~-----~~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 275 GFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV-----GDEAALAAAALALLDLLLDP 333 (353)
T ss_pred CCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC-----CCHHHHHHHHHHHHhccCCh
Confidence 5567899999999999985443 455566555 77888764 455666 66666777766
No 71
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.63 E-value=0.025 Score=51.86 Aligned_cols=263 Identities=17% Similarity=0.117 Sum_probs=138.0
Q ss_pred CcChHHHHHHHHHHHhCCCcEEEEEeCCcch--hhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHHHH
Q 044624 7 QGHVIPFLALAHHLESTKNYTIAFVNTHLNI--KKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKLLE 84 (358)
Q Consensus 7 ~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (358)
.-|+.-+-.+.++|.+ +||+|.+.+-+... +.+.. -++++..+.-. + . ....++..
T Consensus 10 p~hvhfFk~~I~eL~~-~GheV~it~R~~~~~~~LL~~-----yg~~y~~iG~~----g--~----------~~~~Kl~~ 67 (335)
T PF04007_consen 10 PAHVHFFKNIIRELEK-RGHEVLITARDKDETEELLDL-----YGIDYIVIGKH----G--D----------SLYGKLLE 67 (335)
T ss_pred chHHHHHHHHHHHHHh-CCCEEEEEEeccchHHHHHHH-----cCCCeEEEcCC----C--C----------CHHHHHHH
Confidence 3499999999999999 99999998875432 33443 67887766521 1 0 01122222
Q ss_pred HHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhh----ccCCCCC---
Q 044624 85 ATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLW----VDLPHRN--- 157 (358)
Q Consensus 85 ~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~----~~~p~~~--- 157 (358)
...+. -.+.+++++. +||++|+-. .+.+..+|.-+|+|+|.|.-+...........+ ...|..-
T Consensus 68 ~~~R~-~~l~~~~~~~-------~pDv~is~~-s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~Pla~~i~~P~~~~~~ 138 (335)
T PF04007_consen 68 SIERQ-YKLLKLIKKF-------KPDVAISFG-SPEAARVAFGLGIPSIVFNDTEHAIAQNRLTLPLADVIITPEAIPKE 138 (335)
T ss_pred HHHHH-HHHHHHHHhh-------CCCEEEecC-cHHHHHHHHHhCCCeEEEecCchhhccceeehhcCCeeECCcccCHH
Confidence 22222 2334455555 899999743 567788999999999999876543322111110 0111100
Q ss_pred ----CCC-Ccc-ccCCCCCCcccCcccccCCCCCCCCCCCCCChhHHHHHhhcCCCCceEEEEeccCC----CCCHHHHH
Q 044624 158 ----TDS-DEF-LLLDFPEASTIHPVLRFTGSKAGAGKEHGISAELCKNWLDRKPCRSVLYVSFGSQD----TIAVSQMV 227 (358)
Q Consensus 158 ----~~~-~~~-~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~----~~~~~~~~ 227 (358)
... +.. ..+|+.......| ...+.+..+-+.- .+.+.|++=+-+.. ....+.+.
T Consensus 139 ~~~~~G~~~~i~~y~G~~E~ayl~~---------------F~Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~ 202 (335)
T PF04007_consen 139 FLKRFGAKNQIRTYNGYKELAYLHP---------------FKPDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILP 202 (335)
T ss_pred HHHhcCCcCCEEEECCeeeEEeecC---------------CCCChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHH
Confidence 000 000 0111111000001 1223333333432 24567777776643 22335567
Q ss_pred HHHHHHHhCCCcEEEEecCCCC------CCC--CCCCCc--ccc-------cCCcch-hhhhhcCcceEeccccccchhh
Q 044624 228 QLAMALEASGKNFIWIVRPPIG------FDI--NSEFRA--NDA-------DGTQSA-LEALSHGVPINGWPLAAEQFYN 289 (358)
Q Consensus 228 ~~~~al~~~~~~~lw~~~~~~~------~~~--~~~~~~--~wl-------gG~~s~-~eal~~GvP~l~~P~~~DQ~~n 289 (358)
++++.|++.+..++..-+.... +.. ....+. +.+ ||.||+ .||..-|+|.+.+ +-++--..
T Consensus 203 ~ii~~L~~~~~~vV~ipr~~~~~~~~~~~~~~i~~~~vd~~~Ll~~a~l~Ig~ggTMa~EAA~LGtPaIs~-~~g~~~~v 281 (335)
T PF04007_consen 203 EIIEELEKYGRNVVIIPRYEDQRELFEKYGVIIPPEPVDGLDLLYYADLVIGGGGTMAREAALLGTPAISC-FPGKLLAV 281 (335)
T ss_pred HHHHHHHhhCceEEEecCCcchhhHHhccCccccCCCCCHHHHHHhcCEEEeCCcHHHHHHHHhCCCEEEe-cCCcchhH
Confidence 8899999887764444332211 110 001111 111 555555 7999999999974 22232233
Q ss_pred hhhhhccccceEEecccCCccccHHHHHHHHHHHhc
Q 044624 290 SNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMN 325 (358)
Q Consensus 290 a~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~ 325 (358)
-+.+.+. |. -.. .-+++++.+.+++.+.
T Consensus 282 d~~L~~~-Gl--l~~-----~~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 282 DKYLIEK-GL--LYH-----STDPDEIVEYVRKNLG 309 (335)
T ss_pred HHHHHHC-CC--eEe-----cCCHHHHHHHHHHhhh
Confidence 3556666 54 222 3456777776666553
No 72
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=97.51 E-value=0.028 Score=51.58 Aligned_cols=67 Identities=16% Similarity=0.100 Sum_probs=45.1
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEV 340 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l 340 (358)
|--++++||+++|+|+|+-+.. .....+ .. +.|..... +.+++.++|.++++++++.+.+.+++++.
T Consensus 293 ~~~~~~~Eama~G~PvI~~~~~----~~~~~~-~~-~~~~~~~~------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 293 NFGIVVAEALACGTPVVTTDKV----PWQELI-EY-GCGWVVDD------DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred CCCcHHHHHHhcCCCEEEcCCC----CHHHHh-hc-CceEEeCC------ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 4456899999999999996543 233333 34 66766653 34999999999999872233445555444
No 73
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=97.50 E-value=0.013 Score=55.51 Aligned_cols=103 Identities=12% Similarity=0.108 Sum_probs=57.6
Q ss_pred CcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHHHHHH
Q 044624 7 QGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKLLEAT 86 (358)
Q Consensus 7 ~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (358)
.|--.-...|+++|++ +||+|+++++......-..... .++.+..+|.. ..... .... .+.
T Consensus 14 GG~e~~~~~la~~L~~-~G~~V~v~~~~~~~~~~~~~~~--~~i~v~~~p~~----~~~~~----~~~~-----~~~--- 74 (398)
T cd03796 14 GGVETHIYQLSQCLIK-RGHKVVVITHAYGNRVGIRYLT--NGLKVYYLPFV----VFYNQ----STLP-----TFF--- 74 (398)
T ss_pred ccHHHHHHHHHHHHHH-cCCeeEEEeccCCcCCCccccc--CceeEEEecce----eccCC----cccc-----chh---
Confidence 3445668899999999 9999999997532111000001 56666666532 11000 0000 000
Q ss_pred hhchHHHHHHHHHHhhhcCCCCCcEEEECCCCcc----HHHHHHHhCCceEEEc
Q 044624 87 LSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGW----CKEIAQEYGIFHAIFI 136 (358)
Q Consensus 87 ~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~----~~~~A~~lgiP~v~~~ 136 (358)
.....++.+++.. +||+|.+-..... +..+++.+++|++...
T Consensus 75 -~~~~~l~~~~~~~-------~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~ 120 (398)
T cd03796 75 -GTFPLLRNILIRE-------RITIVHGHQAFSALAHEALLHARTMGLKTVFTD 120 (398)
T ss_pred -hhHHHHHHHHHhc-------CCCEEEECCCCchHHHHHHHHhhhcCCcEEEEe
Confidence 1122344555555 8999988764322 3456788899988643
No 74
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.41 E-value=0.13 Score=51.99 Aligned_cols=72 Identities=11% Similarity=0.046 Sum_probs=45.6
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVK 341 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~ 341 (358)
|=-++++||+++|+|+|+....+ +...+.+. ..|+.++. ++.+.+++.+++.+++.+......+++++++..
T Consensus 603 gfp~vlLEAMA~G~PVVat~~gG----~~EiV~dg-~~GlLv~~---~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 603 GLPNVLIEAQFSGVPVVTTLAGG----AGEAVQEG-VTGLTLPA---DTVTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred cchHHHHHHHHcCCeEEEECCCC----hHHHccCC-CCEEEeCC---CCCChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 44568999999999999976532 33444443 46888875 455666666666665543211127777766543
No 75
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=97.37 E-value=0.0022 Score=59.78 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=64.9
Q ss_pred CCceEEEEeccCCCC-CHHHHHHHHHHHHhCCCc-EEEEe--cCCC--C-------CC--CCCC-CC--c------ccc-
Q 044624 207 CRSVLYVSFGSQDTI-AVSQMVQLAMALEASGKN-FIWIV--RPPI--G-------FD--INSE-FR--A------NDA- 261 (358)
Q Consensus 207 ~~~vvyvs~GS~~~~-~~~~~~~~~~al~~~~~~-~lw~~--~~~~--~-------~~--~~~~-~~--~------~wl- 261 (358)
+++.+++++|..... ....+..++++++....+ +.+++ .+.. . .. ...- +. . .+.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 276 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLK 276 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHH
Confidence 345788888887654 345567788887765332 33333 2220 0 10 0110 00 0 001
Q ss_pred --------cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 --------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 --------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
.| |.+.||+++|+|+|+++.. |. +..+++. |+++.+.. +.+++.++|.++++++
T Consensus 277 ~ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~~------~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 277 NADLVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVGT------DPEAILAAIEKLLSDE 338 (363)
T ss_pred cCcEEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecCC------CHHHHHHHHHHHhcCc
Confidence 44 5678999999999998633 22 4455556 76655531 4799999999999987
No 76
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=97.34 E-value=0.055 Score=49.89 Aligned_cols=55 Identities=16% Similarity=-0.054 Sum_probs=40.2
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|--++++||+++|+|+|+-...+ ....+ .. +.|..+.. -++++++++|.++++|+
T Consensus 278 ~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~~-----~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 278 GLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSLD-----ESPEIWAEEILKLKSED 332 (358)
T ss_pred CCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeCC-----CCHHHHHHHHHHHHhCc
Confidence 55679999999999999865544 22333 33 45544432 35799999999999999
No 77
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=97.28 E-value=0.045 Score=49.97 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=36.4
Q ss_pred CcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 264 TQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 264 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
-.+++||+++|+|+|+.... .+...+ +.-..|..++ . .+++.+++.+++..+
T Consensus 258 ~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~~-----~--~~~l~~~l~~l~~~~ 309 (335)
T cd03802 258 GLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLVD-----S--VEELAAAVARADRLD 309 (335)
T ss_pred chHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEeC-----C--HHHHHHHHHHHhccH
Confidence 35899999999999987553 333334 3403676664 2 899999999987544
No 78
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.21 E-value=0.054 Score=50.65 Aligned_cols=64 Identities=20% Similarity=0.205 Sum_probs=41.1
Q ss_pred CcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044624 264 TQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLE 339 (358)
Q Consensus 264 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~ 339 (358)
-.+++||+++|+|+|+-...+ ....+.+. ..|+.++ +.++++.+|.++++|++..+.+.++|++
T Consensus 287 g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~-~~g~~~~-------~~~~~a~~i~~ll~~~~~~~~~~~~a~~ 350 (372)
T cd03792 287 GLTVTEALWKGKPVIAGPVGG----IPLQIEDG-ETGFLVD-------TVEEAAVRILYLLRDPELRRKMGANARE 350 (372)
T ss_pred CHHHHHHHHcCCCEEEcCCCC----chhhcccC-CceEEeC-------CcHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 458999999999999875432 23334433 5576553 2467788999999887222334444444
No 79
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.15 E-value=0.0011 Score=62.95 Aligned_cols=75 Identities=27% Similarity=0.415 Sum_probs=46.8
Q ss_pred CCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCC-------------CCCC-CCCCc-----ccc------
Q 044624 207 CRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIG-------------FDIN-SEFRA-----NDA------ 261 (358)
Q Consensus 207 ~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~-------------~~~~-~~~~~-----~wl------ 261 (358)
+..++|.||.+..-.+++.+...++-|++.+...+|..+.+.. .... ..+.. +.+
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~ 362 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLA 362 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhC
Confidence 3469999999999899999999999999999999998865431 1000 00000 011
Q ss_pred ---------cCCcchhhhhhcCcceEecc
Q 044624 262 ---------DGTQSALEALSHGVPINGWP 281 (358)
Q Consensus 262 ---------gG~~s~~eal~~GvP~l~~P 281 (358)
+|..|++|||+.|||+|.+|
T Consensus 363 DI~LDT~p~nG~TTt~dALwmGVPvVTl~ 391 (468)
T PF13844_consen 363 DICLDTFPYNGGTTTLDALWMGVPVVTLP 391 (468)
T ss_dssp SEEE--SSS--SHHHHHHHHHT--EEB--
T ss_pred CEEeeCCCCCCcHHHHHHHHcCCCEEecc
Confidence 89999999999999999999
No 80
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=96.85 E-value=0.35 Score=46.88 Aligned_cols=56 Identities=9% Similarity=0.004 Sum_probs=37.9
Q ss_pred cchhhhhhcCcceEeccccc--cchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcC
Q 044624 265 QSALEALSHGVPINGWPLAA--EQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNE 326 (358)
Q Consensus 265 ~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~ 326 (358)
.+.+||+++|+|+|+....+ |.-.+...-.+. |.|+.++. -+.+++.+++.++++.
T Consensus 385 l~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~-----~~~~~l~~~i~~~l~~ 442 (476)
T cd03791 385 LTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG-----YNADALLAALRRALAL 442 (476)
T ss_pred HHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC-----CCHHHHHHHHHHHHHH
Confidence 47899999999999865433 222221111123 57888865 5689999999998863
No 81
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.67 E-value=0.014 Score=56.29 Aligned_cols=97 Identities=21% Similarity=0.349 Sum_probs=66.8
Q ss_pred CceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCC-------------CCCCCC-CCCc-----c-----cc--
Q 044624 208 RSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPI-------------GFDINS-EFRA-----N-----DA-- 261 (358)
Q Consensus 208 ~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~-------------~~~~~~-~~~~-----~-----wl-- 261 (358)
.-+||.+|-...-++++.++..++-|.+.+..++|..+.+. ++.... .+.. + .+
T Consensus 758 d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaD 837 (966)
T KOG4626|consen 758 DAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLAD 837 (966)
T ss_pred CeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhh
Confidence 45899999888889999999999999999999999998653 111110 0000 0 01
Q ss_pred --------cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEec
Q 044624 262 --------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVA 304 (358)
Q Consensus 262 --------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 304 (358)
-|.-|.++.|+.|||||.+|.-.=-...|.-+...+|+|--+.
T Consensus 838 v~LDTplcnGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hlia 888 (966)
T KOG4626|consen 838 VCLDTPLCNGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIA 888 (966)
T ss_pred hcccCcCcCCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHh
Confidence 7899999999999999999964422223322223347776443
No 82
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=96.48 E-value=0.032 Score=53.03 Aligned_cols=70 Identities=19% Similarity=0.228 Sum_probs=49.3
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEV 340 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l 340 (358)
|--++++||+++|+|+|+-.. ......+.+. +.|..+.. .-+.++++++|.++++|++..+.++++|++.
T Consensus 322 g~p~~llEAma~G~PVIas~v----gg~~e~i~~~-~~G~l~~~----~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~ 391 (407)
T cd04946 322 GLPVSIMEAMSFGIPVIATNV----GGTPEIVDNG-GNGLLLSK----DPTPNELVSSLSKFIDNEEEYQTMREKAREK 391 (407)
T ss_pred cccHHHHHHHHcCCCEEeCCC----CCcHHHhcCC-CcEEEeCC----CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 556789999999999998653 3344455433 47887763 3478999999999999883334455555543
No 83
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.036 Score=53.26 Aligned_cols=81 Identities=23% Similarity=0.240 Sum_probs=60.4
Q ss_pred CCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCC----------------------CCCCCCC---C---
Q 044624 206 PCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIG----------------------FDINSEF---R--- 257 (358)
Q Consensus 206 ~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~----------------------~~~~~~~---~--- 257 (358)
+++-+||+||+...-..++.+...++-|...+-.++|....... |.++... .
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~ 506 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARY 506 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhh
Confidence 45679999999999999999988888888888899998876220 1110000 0
Q ss_pred --cccc------cCCcchhhhhhcCcceEeccccccchh
Q 044624 258 --ANDA------DGTQSALEALSHGVPINGWPLAAEQFY 288 (358)
Q Consensus 258 --~~wl------gG~~s~~eal~~GvP~l~~P~~~DQ~~ 288 (358)
.+-+ ||.-|+.|+|..|||+|.++ ++||-
T Consensus 507 ~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~Fa 543 (620)
T COG3914 507 GIADLVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFA 543 (620)
T ss_pred chhheeeecccCCCccchHHHHHhcCceeeec--cHHHH
Confidence 0111 99999999999999999997 78874
No 84
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.06 E-value=0.011 Score=54.81 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=47.4
Q ss_pred CcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044624 264 TQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLE 339 (358)
Q Consensus 264 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~ 339 (358)
-++++||+++|+|+|+-+.. .+...+.+. +.|..++. -+.+++.++|.++++|++..+++++++++
T Consensus 284 ~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~~~~~-----~d~~~l~~~i~~l~~~~~~~~~~~~~a~~ 349 (367)
T cd05844 284 PVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGLLVPE-----GDVAALAAALGRLLADPDLRARMGAAGRR 349 (367)
T ss_pred chHHHHHHHcCCCEEEeCCC----CchhheecC-CeeEEECC-----CCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 46899999999999987654 355566555 77887764 46799999999999988212234444443
No 85
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=95.84 E-value=0.45 Score=44.41 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=55.7
Q ss_pred cchhhhhhcCcceEecc-ccccchhhhhhhhccccceEEec-c--c-----C--CccccHHHHHHHHHHHhcCCCCCHHH
Q 044624 265 QSALEALSHGVPINGWP-LAAEQFYNSNLLGEEVGVCAEVA-R--G-----M--NCAVLKEHIVVKIELVMNETEKGKPM 333 (358)
Q Consensus 265 ~s~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~~G~G~~l~-~--~-----~--~~~~~~~~l~~ai~~ll~~~~~~~~~ 333 (358)
-.|+|+...|+|||++= ...=....++++++. .. +.+. . + | .+..|++.+..++.++|+|+ ..
T Consensus 270 TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~-~~-isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~----~~ 343 (373)
T PF02684_consen 270 TATLEAALLGVPMVVAYKVSPLTYFIAKRLVKV-KY-ISLPNIIAGREVVPELIQEDATPENIAAELLELLENP----EK 343 (373)
T ss_pred HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcC-CE-eechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCH----HH
Confidence 35799999999999863 222334456666543 32 1111 0 0 0 25789999999999999999 77
Q ss_pred HHHHHHHHHHHHHhhccCc
Q 044624 334 RMKDLEVKEIIDNAFRNDE 352 (358)
Q Consensus 334 r~~a~~l~~~~~~a~~~gs 352 (358)
++..+...+.+++...+|+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~ 362 (373)
T PF02684_consen 344 RKKQKELFREIRQLLGPGA 362 (373)
T ss_pred HHHHHHHHHHHHHhhhhcc
Confidence 7777777777777766643
No 86
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=95.80 E-value=0.016 Score=54.01 Aligned_cols=74 Identities=20% Similarity=0.157 Sum_probs=51.2
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVK 341 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~ 341 (358)
|.-.+++||+++|+|+|+...-. .....+.+. ..|..++. -+.++++++|.++++|++.-+.+.+++++..
T Consensus 290 g~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-----~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 360 (372)
T cd04949 290 GFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-----GDIEALAEAIIELLNDPKLLQKFSEAAYENA 360 (372)
T ss_pred ccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-----CcHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 55579999999999999865321 133445444 67877764 5789999999999999833345556665554
Q ss_pred HHH
Q 044624 342 EII 344 (358)
Q Consensus 342 ~~~ 344 (358)
+.+
T Consensus 361 ~~~ 363 (372)
T cd04949 361 ERY 363 (372)
T ss_pred HHh
Confidence 443
No 87
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.79 E-value=0.01 Score=43.85 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=43.8
Q ss_pred hhHHHHHhhcCCCCceEEEEeccCCCC---CH--HHHHHHHHHHHhCCCcEEEEecCCC
Q 044624 195 AELCKNWLDRKPCRSVLYVSFGSQDTI---AV--SQMVQLAMALEASGKNFIWIVRPPI 248 (358)
Q Consensus 195 ~~~~~~wld~~~~~~vvyvs~GS~~~~---~~--~~~~~~~~al~~~~~~~lw~~~~~~ 248 (358)
...+.+|+.+.+.+|.|+||+||.... .. ..+..++++++.++..+|..+....
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~ 85 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ 85 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 344556999989999999999998753 22 4778999999999999999887653
No 88
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.75 E-value=0.52 Score=46.47 Aligned_cols=80 Identities=9% Similarity=0.008 Sum_probs=46.2
Q ss_pred chhhhhhcCcceEecc-ccccchhhhhhhhcc-c-cc-------eEEecc--cC-CccccHHHHHHHHHHHhcCCCCCHH
Q 044624 266 SALEALSHGVPINGWP-LAAEQFYNSNLLGEE-V-GV-------CAEVAR--GM-NCAVLKEHIVVKIELVMNETEKGKP 332 (358)
Q Consensus 266 s~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~-~-G~-------G~~l~~--~~-~~~~~~~~l~~ai~~ll~~~~~~~~ 332 (358)
-|+|+..+|+|||++= ...=-...++++.+. . =+ |.++-+ -+ .++.|++.|.+++ ++|.|+ .
T Consensus 499 aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~----~ 573 (608)
T PRK01021 499 IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTS----Q 573 (608)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCH----H
Confidence 4689999999999852 221223345565540 0 11 111111 01 1468999999997 888888 6
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 044624 333 MRMKDLEVKEIIDNAFRN 350 (358)
Q Consensus 333 ~r~~a~~l~~~~~~a~~~ 350 (358)
+|++.++=-+++++..++
T Consensus 574 ~r~~~~~~l~~lr~~Lg~ 591 (608)
T PRK01021 574 SKEKQKDACRDLYQAMNE 591 (608)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 665555544455554443
No 89
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=95.67 E-value=0.025 Score=46.42 Aligned_cols=56 Identities=20% Similarity=0.127 Sum_probs=43.6
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|.-++++||+++|+|+|+. |...+...+.+. +.|+.++. -+.+++.++|.++++++
T Consensus 104 ~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~-----~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 104 GFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP-----NDIEELADAIEKLLNDP 159 (172)
T ss_dssp SS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST-----TSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccceeec----cccCCceeeccc-cceEEeCC-----CCHHHHHHHHHHHHCCH
Confidence 6667999999999999874 455555666555 66888875 38999999999999988
No 90
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=95.57 E-value=2.1 Score=40.09 Aligned_cols=103 Identities=22% Similarity=0.170 Sum_probs=59.5
Q ss_pred CceEEEEeccCC--C-CCHHHHHHHHHHHHhCCCcEEEEec--CCCC---------CCC-CCC-CCc------ccc----
Q 044624 208 RSVLYVSFGSQD--T-IAVSQMVQLAMALEASGKNFIWIVR--PPIG---------FDI-NSE-FRA------NDA---- 261 (358)
Q Consensus 208 ~~vvyvs~GS~~--~-~~~~~~~~~~~al~~~~~~~lw~~~--~~~~---------~~~-~~~-~~~------~wl---- 261 (358)
++.++|++=... . ...+.+.+++++|.+.+.+++++.. ++.. +.. ... ... +.+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~ 280 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLK 280 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHH
Confidence 458888885543 2 3456789999999888766665542 1110 000 010 000 111
Q ss_pred ------cCC-cchhhhhhcCcceEeccccccchhhhhhhhccccceEE-ecccCCccccHHHHHHHHHHHh
Q 044624 262 ------DGT-QSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAE-VARGMNCAVLKEHIVVKIELVM 324 (358)
Q Consensus 262 ------gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~-l~~~~~~~~~~~~l~~ai~~ll 324 (358)
|.. +.+.||.+.|+|.|.+- +-+ ...+. |..+. + ..++++|.+++++++
T Consensus 281 ~a~~vitdSSggi~EA~~lg~Pvv~l~---~R~----e~~~~-g~nvl~v------g~~~~~I~~a~~~~~ 337 (365)
T TIGR03568 281 NADAVIGNSSSGIIEAPSFGVPTINIG---TRQ----KGRLR-ADSVIDV------DPDKEEIVKAIEKLL 337 (365)
T ss_pred hCCEEEEcChhHHHhhhhcCCCEEeec---CCc----hhhhh-cCeEEEe------CCCHHHHHHHHHHHh
Confidence 444 77899999999999773 211 11122 33322 3 246899999999954
No 91
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=95.52 E-value=0.024 Score=52.21 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=47.6
Q ss_pred CC-cchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044624 263 GT-QSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVK 341 (358)
Q Consensus 263 G~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~ 341 (358)
|+ ++++||+++|+|+|+-+..+ ...+.+. +.|..++. -+.+++.+++.++++|++..+++++++++..
T Consensus 281 ~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~~-----~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 349 (366)
T cd03822 281 TQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVPP-----GDPAALAEAIRRLLADPELAQALRARAREYA 349 (366)
T ss_pred ccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEcC-----CCHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 44 47889999999999977654 3334445 77777764 4589999999999998723334555555443
No 92
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.49 E-value=0.024 Score=45.33 Aligned_cols=95 Identities=15% Similarity=0.206 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHHHHHHhhchH
Q 044624 12 PFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKLLEATLSFKP 91 (358)
Q Consensus 12 P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (358)
=+..|+++|++ +||+|++++........+. .. .++++..++... ... ...... ...
T Consensus 6 ~~~~l~~~L~~-~G~~V~v~~~~~~~~~~~~-~~--~~~~~~~~~~~~----~~~--------~~~~~~--------~~~ 61 (160)
T PF13579_consen 6 YVRELARALAA-RGHEVTVVTPQPDPEDDEE-EE--DGVRVHRLPLPR----RPW--------PLRLLR--------FLR 61 (160)
T ss_dssp HHHHHHHHHHH-TT-EEEEEEE---GGG-SE-EE--TTEEEEEE--S-----SSS--------GGGHCC--------HHH
T ss_pred HHHHHHHHHHH-CCCEEEEEecCCCCccccc-cc--CCceEEeccCCc----cch--------hhhhHH--------HHH
Confidence 36789999999 9999999997655442211 11 678888776431 110 000000 112
Q ss_pred HHHHHH--HHHhhhcCCCCCcEEEECCCCcc-HHHHHH-HhCCceEEEcc
Q 044624 92 HFKKLI--IDLIDEQNGHKPLCIITDMFFGW-CKEIAQ-EYGIFHAIFIE 137 (358)
Q Consensus 92 ~l~~ll--~~~~~~~~~~~pd~vV~D~~~~~-~~~~A~-~lgiP~v~~~~ 137 (358)
.+.+++ +.. +||+|.+.....+ ...+++ ..++|++....
T Consensus 62 ~~~~~l~~~~~-------~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 62 RLRRLLAARRE-------RPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHHCHHCT----------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHHHHhhhcc-------CCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 334444 222 8999998884332 234555 78999988654
No 93
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=95.28 E-value=0.033 Score=52.04 Aligned_cols=68 Identities=13% Similarity=0.138 Sum_probs=47.1
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLE 339 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~ 339 (358)
|--++++||+++|+|+|+-...+ +...+.+. ..|..++. -+.++++++|.+++++++..+.+.++|++
T Consensus 284 g~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~-~~g~~~~~-----~d~~~la~~i~~l~~~~~~~~~~~~~a~~ 351 (374)
T TIGR03088 284 GISNTILEAMASGLPVIATAVGG----NPELVQHG-VTGALVPP-----GDAVALARALQPYVSDPAARRAHGAAGRA 351 (374)
T ss_pred cCchHHHHHHHcCCCEEEcCCCC----cHHHhcCC-CceEEeCC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 55679999999999999976533 44444443 56777754 46789999999999987222234444443
No 94
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=94.93 E-value=0.047 Score=50.35 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=51.9
Q ss_pred hhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 044624 267 ALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDN 346 (358)
Q Consensus 267 ~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~~~~~~ 346 (358)
+.+.+++|+|+|+++ +...+..+.+. ++|+.++ +.+++.+++.++. ++ +.+.|++|++++++.+++
T Consensus 253 ~~~ymA~G~PVI~~~----~~~~~~~V~~~-~~G~~v~-------~~~el~~~l~~~~-~~-~~~~m~~n~~~~~~~~~~ 318 (333)
T PRK09814 253 LSLYLAAGLPVIVWS----KAAIADFIVEN-GLGFVVD-------SLEELPEIIDNIT-EE-EYQEMVENVKKISKLLRN 318 (333)
T ss_pred HHHHHHCCCCEEECC----CccHHHHHHhC-CceEEeC-------CHHHHHHHHHhcC-HH-HHHHHHHHHHHHHHHHhc
Confidence 667899999999964 45677777777 9999985 3578999998863 34 455789999999988875
No 95
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=94.80 E-value=0.053 Score=49.83 Aligned_cols=67 Identities=18% Similarity=0.170 Sum_probs=44.9
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDL 338 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~ 338 (358)
|.-++++||+++|+|+|+.+..+ ....+ +.-..|..++. -+.+++.++|.++++|++..++++++|+
T Consensus 273 ~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~a~ 339 (355)
T cd03799 273 GLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGLLVPP-----GDPEALADAIERLLDDPELRREMGEAGR 339 (355)
T ss_pred CccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceEEeCC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 33468999999999999866422 22233 34147877764 4789999999999998822223344443
No 96
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=94.73 E-value=0.05 Score=51.00 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=47.3
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccC-CccccHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGM-NCAVLKEHIVVKIELVMNETEKGKPMRMKDLE 339 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~-~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~ 339 (358)
+.-.+++||+++|+|+|+... ..+...+.+. +.|..++.+. +..-..+++.++|.++++|+++.+++.+++++
T Consensus 292 ~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~ 365 (388)
T TIGR02149 292 PLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRK 365 (388)
T ss_pred CCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 334577999999999998654 3344555544 6788886510 01122389999999999988333345555554
No 97
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=94.65 E-value=0.062 Score=50.82 Aligned_cols=66 Identities=20% Similarity=0.188 Sum_probs=44.3
Q ss_pred cCC-cchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044624 262 DGT-QSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLE 339 (358)
Q Consensus 262 gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~ 339 (358)
.|+ +.++||+++|+|+|+.+...+.. .... |.|+.+. -++++++++|.++++|++..+.+.+++++
T Consensus 309 eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~------~~~~~la~ai~~ll~~~~~~~~~~~~ar~ 375 (397)
T TIGR03087 309 RGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA------ADPADFAAAILALLANPAEREELGQAARR 375 (397)
T ss_pred CCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC------CCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 344 46999999999999987643221 1223 5666653 36899999999999988223344455544
No 98
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=94.64 E-value=0.065 Score=50.90 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=45.6
Q ss_pred cchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhc-CCCCCHHHHHHHHH
Q 044624 265 QSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMN-ETEKGKPMRMKDLE 339 (358)
Q Consensus 265 ~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~-~~~~~~~~r~~a~~ 339 (358)
++++||+++|+|+|+-...+ ....+.+. ..|+.++. -+.++++++|.++++ |+++.+++.+++++
T Consensus 319 ~~llEAma~G~PVI~t~~~g----~~E~v~~~-~~G~lv~~-----~d~~~la~ai~~l~~~d~~~~~~~~~~ar~ 384 (406)
T PRK15427 319 VALMEAMAVGIPVVSTLHSG----IPELVEAD-KSGWLVPE-----NDAQALAQRLAAFSQLDTDELAPVVKRARE 384 (406)
T ss_pred HHHHHHHhCCCCEEEeCCCC----chhhhcCC-CceEEeCC-----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56899999999999975433 33344433 56877764 468999999999999 77223345555554
No 99
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=94.60 E-value=0.064 Score=49.58 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=45.4
Q ss_pred cchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC-CCCHHHHHHHH
Q 044624 265 QSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET-EKGKPMRMKDL 338 (358)
Q Consensus 265 ~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~-~~~~~~r~~a~ 338 (358)
.+++||+++|+|+|+....+ ....+.+. +.|+.++. -+.++++++|.++++|+ ...+.++++++
T Consensus 275 ~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-----~~~~~la~~i~~l~~~~~~~~~~~~~~~~ 339 (351)
T cd03804 275 IVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-----QTVESLAAAVERFEKNEDFDPQAIRAHAE 339 (351)
T ss_pred chHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-----CCHHHHHHHHHHHHhCcccCHHHHHHHHH
Confidence 56789999999999986533 33445444 67888864 46888999999999987 23334444444
No 100
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.60 E-value=0.065 Score=52.07 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=45.8
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhcc----cc-ceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEE----VG-VCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMK 336 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~----~G-~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~ 336 (358)
|--++++||+++|+|+|+- |.......+.+. +| .|..++. -+.++++++|.++++|++..+.+.++
T Consensus 382 g~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~~-----~d~~~la~ai~~ll~~~~~~~~~~~~ 452 (475)
T cd03813 382 GQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVPP-----ADPEALARAILRLLKDPELRRAMGEA 452 (475)
T ss_pred cCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEECC-----CCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5557899999999999995 333344444431 12 6777764 57899999999999998223334444
Q ss_pred HH
Q 044624 337 DL 338 (358)
Q Consensus 337 a~ 338 (358)
++
T Consensus 453 a~ 454 (475)
T cd03813 453 GR 454 (475)
T ss_pred HH
Confidence 44
No 101
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=94.44 E-value=0.12 Score=48.04 Aligned_cols=71 Identities=14% Similarity=0.064 Sum_probs=48.9
Q ss_pred cCCcchhhhhhcCcceEecc-ccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCC--CCHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWP-LAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETE--KGKPMRMKDL 338 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~--~~~~~r~~a~ 338 (358)
|--++++||+++|+|+|+.- ..+ ....+.+. ..|.-++. -+.++++++|.++++|++ ..+.++++++
T Consensus 269 gf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~~-----~d~~~la~~i~~l~~~~~~~~~~~~~~~~~ 338 (359)
T PRK09922 269 GFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYTP-----GNIDEFVGKLNKVISGEVKYQHDAIPNSIE 338 (359)
T ss_pred CcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEECC-----CCHHHHHHHHHHHHhCcccCCHHHHHHHHH
Confidence 44579999999999999875 322 22234333 56877764 578999999999999983 1334555555
Q ss_pred HHHH
Q 044624 339 EVKE 342 (358)
Q Consensus 339 ~l~~ 342 (358)
+..+
T Consensus 339 ~~~~ 342 (359)
T PRK09922 339 RFYE 342 (359)
T ss_pred HhhH
Confidence 5544
No 102
>PHA01633 putative glycosyl transferase group 1
Probab=94.41 E-value=0.11 Score=47.85 Aligned_cols=60 Identities=17% Similarity=0.092 Sum_probs=40.7
Q ss_pred cCCcchhhhhhcCcceEeccc------cccc------hhhhhhhh--ccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPL------AAEQ------FYNSNLLG--EEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~------~~DQ------~~na~~v~--~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|=-++++||+++|+|+|+--+ .+|+ ..+....+ +. |.|..++ ..++++++.+|.+++...
T Consensus 235 gfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~-g~g~~~~-----~~d~~~la~ai~~~~~~~ 308 (335)
T PHA01633 235 GFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEH-GQKWKIH-----KFQIEDMANAIILAFELQ 308 (335)
T ss_pred cCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCccc-Cceeeec-----CCCHHHHHHHHHHHHhcc
Confidence 334678999999999998633 3443 23333333 24 6677765 378999999999995443
No 103
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=94.34 E-value=0.14 Score=48.16 Aligned_cols=54 Identities=17% Similarity=0.224 Sum_probs=40.1
Q ss_pred cchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 265 QSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 265 ~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
.+++||+++|+|+|+....+ +...+.+. ..|..+.. ..+.++++++|.++++|+
T Consensus 292 ~~~lEAma~G~PVI~s~~gg----~~Eiv~~~-~~G~~l~~----~~d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 292 MVAVEAMAAGKPVLASTKGG----ITEFVLEG-ITGYHLAE----PMTSDSIISDINRTLADP 345 (380)
T ss_pred cHHHHHHHcCCCEEEeCCCC----cHhhcccC-CceEEEeC----CCCHHHHHHHHHHHHcCH
Confidence 57899999999999976532 33444443 56775532 357899999999999998
No 104
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=94.32 E-value=0.08 Score=50.86 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=45.3
Q ss_pred CcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 044624 264 TQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDL 338 (358)
Q Consensus 264 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~ 338 (358)
-++++||+++|+|+|+.... .+...+.+. ..|+.++. -++++++++|.++++|+...+.+.++++
T Consensus 354 g~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv~~-----~d~~~la~~i~~ll~~~~~~~~~~~~a~ 418 (439)
T TIGR02472 354 GLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLVDV-----LDLEAIASALEDALSDSSQWQLWSRNGI 418 (439)
T ss_pred ccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEeCC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 35899999999999987653 344444433 46877764 5689999999999998822233444443
No 105
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=94.29 E-value=0.67 Score=42.45 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=38.1
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|.-++++||+++|+|+|+-... .....+. ..|..+.. -+.+++.++|.++++|+
T Consensus 284 ~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~---~~~~~~~~-----~~~~~~~~~i~~l~~~~ 337 (365)
T cd03809 284 GFGLPVLEAMACGTPVIASNIS----SLPEVAG---DAALYFDP-----LDPEALAAAIERLLEDP 337 (365)
T ss_pred cCCCCHHHHhcCCCcEEecCCC----Cccceec---CceeeeCC-----CCHHHHHHHHHHHhcCH
Confidence 5567899999999999985542 1222222 23455543 36899999999999988
No 106
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=94.22 E-value=0.5 Score=37.09 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=57.4
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHHHHHHhhchHH
Q 044624 13 FLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKLLEATLSFKPH 92 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (358)
...+++.|.+ +||+|++++.....+..... .++.+..++.. . .. . .. + .. .. .
T Consensus 13 ~~~~~~~L~~-~g~~V~ii~~~~~~~~~~~~----~~i~~~~~~~~-----~-------k~-~---~~-~---~~-~~-~ 65 (139)
T PF13477_consen 13 IYNLAKELKK-RGYDVHIITPRNDYEKYEII----EGIKVIRLPSP-----R-------KS-P---LN-Y---IK-YF-R 65 (139)
T ss_pred HHHHHHHHHH-CCCEEEEEEcCCCchhhhHh----CCeEEEEecCC-----C-------Cc-c---HH-H---HH-HH-H
Confidence 5688999999 99999999996654333211 67888766421 0 00 1 11 1 11 12 5
Q ss_pred HHHHHHHHhhhcCCCCCcEEEECCCCcc-H--HHHHHHhC-CceEEEcc
Q 044624 93 FKKLIIDLIDEQNGHKPLCIITDMFFGW-C--KEIAQEYG-IFHAIFIE 137 (358)
Q Consensus 93 l~~ll~~~~~~~~~~~pd~vV~D~~~~~-~--~~~A~~lg-iP~v~~~~ 137 (358)
+..++++. +||+|.+...... . ..++...+ +|.+....
T Consensus 66 l~k~ik~~-------~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 66 LRKIIKKE-------KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHHHhccC-------CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 56777776 8999988876653 2 23556778 88876443
No 107
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=93.74 E-value=0.13 Score=47.98 Aligned_cols=57 Identities=23% Similarity=0.086 Sum_probs=42.7
Q ss_pred chhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHH
Q 044624 266 SALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKD 337 (358)
Q Consensus 266 s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a 337 (358)
.+.||+++|+|+|..+-.++++. +.+. |.++.+. -+++++.+++.++++|+ ..+++.
T Consensus 285 ~~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~------~d~~~i~~ai~~ll~~~----~~~~~~ 341 (365)
T TIGR00236 285 VQEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG------TDKENITKAAKRLLTDP----DEYKKM 341 (365)
T ss_pred HHHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC------CCHHHHHHHHHHHHhCh----HHHHHh
Confidence 37999999999999976666553 3334 7666553 36899999999999988 555543
No 108
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.09 E-value=0.32 Score=35.28 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=37.1
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhcccc-ceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVG-VCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|-..-+.|++++|+|+|+-.. ......+ +. | -++.. . +.+++..+|+.+++|+
T Consensus 10 ~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~-~~~~~~~------~-~~~el~~~i~~ll~~~ 63 (92)
T PF13524_consen 10 GPNMRIFEAMACGTPVISDDS----PGLREIF-ED-GEHIITY------N-DPEELAEKIEYLLENP 63 (92)
T ss_pred CCchHHHHHHHCCCeEEECCh----HHHHHHc-CC-CCeEEEE------C-CHHHHHHHHHHHHCCH
Confidence 334578999999999998765 3333333 23 3 23333 2 7999999999999998
No 109
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.86 E-value=1.2 Score=36.55 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=25.4
Q ss_pred CCcEEEECCCCccHHHHHHHh-CCceEEEcc
Q 044624 108 KPLCIITDMFFGWCKEIAQEY-GIFHAIFIE 137 (358)
Q Consensus 108 ~pd~vV~D~~~~~~~~~A~~l-giP~v~~~~ 137 (358)
.||+||.....-.++-+-+.+ ++|.+.++-
T Consensus 66 ~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 66 VPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 799999999877788888888 899888754
No 110
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=92.59 E-value=7.6 Score=36.08 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=47.1
Q ss_pred cCCcchhhhhhcCcceEeccc-cccchhhhhhhhccccceE-------Eecc-cCCccccHHHHHHHHHHHhcCCCCCHH
Q 044624 262 DGTQSALEALSHGVPINGWPL-AAEQFYNSNLLGEEVGVCA-------EVAR-GMNCAVLKEHIVVKIELVMNETEKGKP 332 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~-~~DQ~~na~~v~~~~G~G~-------~l~~-~~~~~~~~~~l~~ai~~ll~~~~~~~~ 332 (358)
+|. -++|+..+|+|||+.=- -.=-...+++.++-+=+++ .+-+ .=..+.+++.|.+++.+++.|+...+.
T Consensus 272 SGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~ 350 (381)
T COG0763 272 SGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREA 350 (381)
T ss_pred ccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHH
Confidence 444 36899999999998521 1111234455554422222 1111 002568899999999999998822234
Q ss_pred HHHHHHHHHHHHH
Q 044624 333 MRMKDLEVKEIID 345 (358)
Q Consensus 333 ~r~~a~~l~~~~~ 345 (358)
+++.-+++.+.++
T Consensus 351 ~~~~~~~l~~~l~ 363 (381)
T COG0763 351 LKEKFRELHQYLR 363 (381)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555554443
No 111
>PLN00142 sucrose synthase
Probab=92.46 E-value=1.1 Score=45.96 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=36.6
Q ss_pred cchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHH----HhcCC
Q 044624 265 QSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIEL----VMNET 327 (358)
Q Consensus 265 ~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~----ll~~~ 327 (358)
.+++||+++|+|+|+-... .....+.+. ..|..++. -+.++++++|.+ +++|+
T Consensus 681 LvvLEAMA~GlPVVATdvG----G~~EIV~dG-~tG~LV~P-----~D~eaLA~aI~~lLekLl~Dp 737 (815)
T PLN00142 681 LTVVEAMTCGLPTFATCQG----GPAEIIVDG-VSGFHIDP-----YHGDEAANKIADFFEKCKEDP 737 (815)
T ss_pred HHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeCC-----CCHHHHHHHHHHHHHHhcCCH
Confidence 4899999999999986543 344444443 46888875 456777777665 45677
No 112
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=92.21 E-value=0.14 Score=39.98 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=34.1
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNE 326 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~ 326 (358)
|--+++.|++++|+|+|+.+. ......... +.|..+ . -+++++.++|+++++|
T Consensus 83 ~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~-~~~~~~-~-----~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 83 GFPNKLLEAMAAGKPVIASDN-----GAEGIVEED-GCGVLV-A-----NDPEELAEAIERLLND 135 (135)
T ss_dssp CC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE--T-----T-HHHHHHHHHHHHH-
T ss_pred cCcHHHHHHHHhCCCEEECCc-----chhhheeec-CCeEEE-C-----CCHHHHHHHHHHHhcC
Confidence 445899999999999999876 122333334 777766 3 3799999999999876
No 113
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=92.02 E-value=0.42 Score=37.93 Aligned_cols=90 Identities=22% Similarity=0.230 Sum_probs=56.6
Q ss_pred eEEEEeccCCCCCH-HH--HHHHHHHHHhCCC-cEEEEecCCC-CCCCC------C-CCCc----------ccc------
Q 044624 210 VLYVSFGSQDTIAV-SQ--MVQLAMALEASGK-NFIWIVRPPI-GFDIN------S-EFRA----------NDA------ 261 (358)
Q Consensus 210 vvyvs~GS~~~~~~-~~--~~~~~~al~~~~~-~~lw~~~~~~-~~~~~------~-~~~~----------~wl------ 261 (358)
.+||+-||....+- .. -.+..+.|...|. +.+.-++... .+.+. . +... +.+
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~AdlV 84 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSADLV 84 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhhccEE
Confidence 69999999874221 11 1456777777776 4444454431 11111 0 1000 111
Q ss_pred ---cCCcchhhhhhcCcceEeccc----cccchhhhhhhhccccce
Q 044624 262 ---DGTQSALEALSHGVPINGWPL----AAEQFYNSNLLGEEVGVC 300 (358)
Q Consensus 262 ---gG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~~G~G 300 (358)
+|.||++|.|..|+|.|+++- ---|-.-|..+++. |.=
T Consensus 85 IsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL 129 (170)
T KOG3349|consen 85 ISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYL 129 (170)
T ss_pred EecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcE
Confidence 999999999999999999984 23578888888877 553
No 114
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.77 E-value=0.59 Score=37.83 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=22.3
Q ss_pred CcChHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 044624 7 QGHVIPFLALAHHLESTKNYTIAFVNTHLN 36 (358)
Q Consensus 7 ~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~ 36 (358)
.|=-.-+..|+++|++ +||+|+++++...
T Consensus 12 GG~e~~~~~l~~~l~~-~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 12 GGAERVVLNLARALAK-RGHEVTVVSPGVK 40 (177)
T ss_dssp SHHHHHHHHHHHHHHH-TT-EEEEEESS-T
T ss_pred ChHHHHHHHHHHHHHH-CCCEEEEEEcCCC
Confidence 3445678899999999 9999999987543
No 115
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=91.33 E-value=0.39 Score=46.97 Aligned_cols=77 Identities=12% Similarity=0.066 Sum_probs=47.9
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEeccc--CCcccc-HHHHHHHHHHHhcCCCCCHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARG--MNCAVL-KEHIVVKIELVMNETEKGKPMRMKDL 338 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~--~~~~~~-~~~l~~ai~~ll~~~~~~~~~r~~a~ 338 (358)
|--.+++||+++|+|+|+.-+.+ .+...+.+. .-|..+..+ ++..-+ .++++++|.++++++ +.+.|.++|+
T Consensus 404 gfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~~-~~~~~~~~a~ 478 (500)
T TIGR02918 404 GFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEEEDDEDQIITALAEKIVEYFNSN-DIDAFHEYSY 478 (500)
T ss_pred cccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCccccchhHHHHHHHHHHHHHhChH-HHHHHHHHHH
Confidence 55578999999999999975431 122333333 457776531 001112 789999999999654 4445666666
Q ss_pred HHHHH
Q 044624 339 EVKEI 343 (358)
Q Consensus 339 ~l~~~ 343 (358)
+.++.
T Consensus 479 ~~a~~ 483 (500)
T TIGR02918 479 QIAEG 483 (500)
T ss_pred HHHHh
Confidence 65444
No 116
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=90.80 E-value=4 Score=41.94 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=39.7
Q ss_pred CcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHh----cCC
Q 044624 264 TQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVM----NET 327 (358)
Q Consensus 264 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll----~~~ 327 (358)
-.+++||++||+|+|+--.. .....+.+. ..|..++. -++++++++|.+++ .|+
T Consensus 657 GLvvLEAMAcGlPVVAT~~G----G~~EiV~dg-~tGfLVdp-----~D~eaLA~aL~~ll~kll~dp 714 (784)
T TIGR02470 657 GLTVLEAMTCGLPTFATRFG----GPLEIIQDG-VSGFHIDP-----YHGEEAAEKIVDFFEKCDEDP 714 (784)
T ss_pred CHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeCC-----CCHHHHHHHHHHHHHHhcCCH
Confidence 35899999999999986543 344445444 56888875 46788888888876 566
No 117
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=90.55 E-value=2.1 Score=41.14 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhCCCc--EEEEEeCCcch--------hhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHH
Q 044624 11 IPFLALAHHLESTKNY--TIAFVNTHLNI--------KKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVR 80 (358)
Q Consensus 11 ~P~l~La~~L~~~rGh--~Vt~~t~~~~~--------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
.-+..|+++|++ +|| +|+++|..... ..... .. .+++++.++.. +.... . ..
T Consensus 30 ~~v~~La~~L~~-~G~~~~V~v~t~~~~~~~~~~~~~~~~~~-~~--~gv~v~r~~~~------~~~~~-----~---~~ 91 (439)
T TIGR02472 30 KYVLELARALAR-RSEVEQVDLVTRLIKDAKVSPDYAQPIER-IA--PGARIVRLPFG------PRRYL-----R---KE 91 (439)
T ss_pred hHHHHHHHHHHh-CCCCcEEEEEeccccCcCCCCccCCCeeE-eC--CCcEEEEecCC------CCCCc-----C---hh
Confidence 446789999999 998 99999953211 11110 01 56777766532 11000 0 01
Q ss_pred HHHHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCc--cHHHHHHHhCCceEEEcc
Q 044624 81 KLLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFG--WCKEIAQEYGIFHAIFIE 137 (358)
Q Consensus 81 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~--~~~~~A~~lgiP~v~~~~ 137 (358)
.+...+..+...+..++++.. . +||+|-+..... .+..+++.+|+|+|....
T Consensus 92 ~~~~~~~~~~~~l~~~~~~~~----~-~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~H 145 (439)
T TIGR02472 92 LLWPYLDELADNLLQHLRQQG----H-LPDLIHAHYADAGYVGARLSRLLGVPLIFTGH 145 (439)
T ss_pred hhhhhHHHHHHHHHHHHHHcC----C-CCCEEEEcchhHHHHHHHHHHHhCCCEEEecc
Confidence 111111223334444554320 1 699999976432 234467788999877544
No 118
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=90.48 E-value=0.39 Score=40.52 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhhh
Q 044624 13 FLALAHHLESTKNYTIAFVNTHLNIKKI 40 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~~~~~~ 40 (358)
+..|.++|.+ .||+|+++.+...+.-.
T Consensus 16 i~aL~~~L~~-~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 16 IRALAKALSA-LGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp HHHHHHHHTT-TSSEEEEEEESSSTTTS
T ss_pred HHHHHHHHHh-cCCeEEEEeCCCCCcCc
Confidence 5679999988 89999999998776543
No 119
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.12 E-value=6 Score=35.66 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=71.4
Q ss_pred CcChHHHHHHHHHHHhCCCcEEEEEeCCcc--hhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHHHH
Q 044624 7 QGHVIPFLALAHHLESTKNYTIAFVNTHLN--IKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKLLE 84 (358)
Q Consensus 7 ~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (358)
.-|+.-+-.|-++|.+ +||+|.+.+-+.. .+.+.. -|+.+..+.-. +. .. ...++..
T Consensus 10 ~~hvhfFk~lI~elek-kG~ev~iT~rd~~~v~~LLd~-----ygf~~~~Igk~----g~-------~t----l~~Kl~~ 68 (346)
T COG1817 10 PPHVHFFKNLIWELEK-KGHEVLITCRDFGVVTELLDL-----YGFPYKSIGKH----GG-------VT----LKEKLLE 68 (346)
T ss_pred cchhhHHHHHHHHHHh-CCeEEEEEEeecCcHHHHHHH-----hCCCeEeeccc----CC-------cc----HHHHHHH
Confidence 4588889999999999 9999987765432 233333 56777755421 10 00 0112222
Q ss_pred HHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHH
Q 044624 85 ATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFA 144 (358)
Q Consensus 85 ~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 144 (358)
...+ .-.+.+++.+. +||+.|. -+.+.+..+|--+|+|.+.+.-..-+...
T Consensus 69 ~~eR-~~~L~ki~~~~-------kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA~~q 119 (346)
T COG1817 69 SAER-VYKLSKIIAEF-------KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHAEAQ 119 (346)
T ss_pred HHHH-HHHHHHHHhhc-------CCceEee-cCCcchhhHHhhcCCceEEecCChhHHHH
Confidence 2211 12456777777 8999999 77888999999999999999876654433
No 120
>PRK10125 putative glycosyl transferase; Provisional
Probab=88.91 E-value=4.4 Score=38.46 Aligned_cols=48 Identities=19% Similarity=0.020 Sum_probs=34.7
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKI 320 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai 320 (358)
|--++++||+++|+|+|+....+ . ..+++. +.|+.++. -+.++|++++
T Consensus 318 gfp~vilEAmA~G~PVVat~~gG----~-~Eiv~~-~~G~lv~~-----~d~~~La~~~ 365 (405)
T PRK10125 318 NYPLILCEALSIGVPVIATHSDA----A-REVLQK-SGGKTVSE-----EEVLQLAQLS 365 (405)
T ss_pred cCcCHHHHHHHcCCCEEEeCCCC----h-HHhEeC-CcEEEECC-----CCHHHHHhcc
Confidence 66678999999999999988765 1 223445 67888875 3567777654
No 121
>PHA01630 putative group 1 glycosyl transferase
Probab=88.86 E-value=12 Score=34.53 Aligned_cols=59 Identities=15% Similarity=-0.008 Sum_probs=35.8
Q ss_pred cCCcchhhhhhcCcceEeccccc--cchhhhh--hhhcc-----------ccceEEecccCCccccHHHHHHHHHHHhcC
Q 044624 262 DGTQSALEALSHGVPINGWPLAA--EQFYNSN--LLGEE-----------VGVCAEVARGMNCAVLKEHIVVKIELVMNE 326 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~--DQ~~na~--~v~~~-----------~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~ 326 (358)
|--.+++||+++|+|+|+.-..+ |...+.. .+++. .++|..+. .+.+++.+++.++|.|
T Consensus 221 ~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~------~~~~~~~~~ii~~l~~ 294 (331)
T PHA01630 221 AFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLD------PDIEDAYQKLLEALAN 294 (331)
T ss_pred cCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccC------CCHHHHHHHHHHHHhC
Confidence 44568999999999999976543 3222210 11111 12344443 2567788888888887
No 122
>PRK14098 glycogen synthase; Provisional
Probab=88.01 E-value=2.6 Score=41.12 Aligned_cols=54 Identities=17% Similarity=0.125 Sum_probs=36.8
Q ss_pred cCCcchhhhhhcCcceEeccccc--cchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHh
Q 044624 262 DGTQSALEALSHGVPINGWPLAA--EQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVM 324 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll 324 (358)
||. +.+||+++|+|.|+....+ |...+ ...+. +.|..++. -+++++.++|.+++
T Consensus 394 ~Gl-~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~-~~G~l~~~-----~d~~~la~ai~~~l 449 (489)
T PRK14098 394 CGM-LQMFAMSYGTIPVAYAGGGIVETIEE--VSEDK-GSGFIFHD-----YTPEALVAKLGEAL 449 (489)
T ss_pred chH-HHHHHHhCCCCeEEecCCCCceeeec--CCCCC-CceeEeCC-----CCHHHHHHHHHHHH
Confidence 665 8899999999888876533 22111 11123 67887764 56899999998866
No 123
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=87.67 E-value=2.8 Score=35.03 Aligned_cols=93 Identities=17% Similarity=0.196 Sum_probs=46.3
Q ss_pred CCCcChHHHHHHHHHHHhCC--CcEEEEEeCCc-chhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHH
Q 044624 5 MAQGHVIPFLALAHHLESTK--NYTIAFVNTHL-NIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRK 81 (358)
Q Consensus 5 p~~GH~~P~l~La~~L~~~r--Gh~Vt~~t~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (358)
.+.|-++-..+|.++|.+ + |+.|.+-|+.. ..+.+.+... +.+....+|++
T Consensus 29 ~SvGE~~a~~~Li~~l~~-~~p~~~illT~~T~tg~~~~~~~~~--~~v~~~~~P~D----------------------- 82 (186)
T PF04413_consen 29 ASVGEVNAARPLIKRLRK-QRPDLRILLTTTTPTGREMARKLLP--DRVDVQYLPLD----------------------- 82 (186)
T ss_dssp SSHHHHHHHHHHHHHHTT----TS-EEEEES-CCHHHHHHGG-G--GG-SEEE---S-----------------------
T ss_pred CCHHHHHHHHHHHHHHHH-hCCCCeEEEEecCCchHHHHHHhCC--CCeEEEEeCcc-----------------------
Confidence 355788999999999999 6 89988877643 3333433211 23333334421
Q ss_pred HHHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCcc--HHHHHHHhCCceEEEcc
Q 044624 82 LLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGW--CKEIAQEYGIFHAIFIE 137 (358)
Q Consensus 82 ~~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~--~~~~A~~lgiP~v~~~~ 137 (358)
....++.+++.+ +||++|.=..-.| ....|++.|||.+.+.-
T Consensus 83 -------~~~~~~rfl~~~-------~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 -------FPWAVRRFLDHW-------RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -------SHHHHHHHHHHH---------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -------CHHHHHHHHHHh-------CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 123456788888 8875554444444 35688899999998753
No 124
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=87.50 E-value=0.51 Score=43.67 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=49.8
Q ss_pred cCCcchhhhhhcCcceEecccc--ccchhhhhhhhcc--ccceEEe-c----c-----cCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLA--AEQFYNSNLLGEE--VGVCAEV-A----R-----GMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~--~DQ~~na~~v~~~--~G~G~~l-~----~-----~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
.|..|+ |+..+|+|||+ +.- .=|..||+++++. .|..--+ + + .-.+..|++.|.+++.+ ...+
T Consensus 243 SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~-~~~~ 319 (347)
T PRK14089 243 SGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKE-MDRE 319 (347)
T ss_pred CcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHHHH-HHHH
Confidence 788777 99999999999 443 3577899998731 1432222 1 0 01256889999999987 2333
Q ss_pred CCCHHHHHHHHHHHHHH
Q 044624 328 EKGKPMRMKDLEVKEII 344 (358)
Q Consensus 328 ~~~~~~r~~a~~l~~~~ 344 (358)
++++..+++++.+
T Consensus 320 ----~~~~~~~~l~~~l 332 (347)
T PRK14089 320 ----KFFKKSKELREYL 332 (347)
T ss_pred ----HHHHHHHHHHHHh
Confidence 5666666665554
No 125
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=86.62 E-value=0.91 Score=44.54 Aligned_cols=51 Identities=6% Similarity=0.132 Sum_probs=37.5
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
=|.++.+||+++|+|+| .......|.+. .=|.-+. +.++|.++|..+|.+.
T Consensus 439 eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li~-------d~~~l~~al~~~L~~~ 489 (519)
T TIGR03713 439 PDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYIID-------DISELLKALDYYLDNL 489 (519)
T ss_pred CChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEeC-------CHHHHHHHHHHHHhCH
Confidence 45559999999999999 33334444433 4466663 4789999999999988
No 126
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=86.17 E-value=5.4 Score=33.41 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=24.6
Q ss_pred CCcChHHHHHHHHHHHhCCCcEEEEEe
Q 044624 6 AQGHVIPFLALAHHLESTKNYTIAFVN 32 (358)
Q Consensus 6 ~~GH~~P~l~La~~L~~~rGh~Vt~~t 32 (358)
..|+-.....|++.|.+ +||+|++++
T Consensus 12 ~~G~~~~~~~l~~~L~~-~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALAR-RGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHH-cCCeEEEEE
Confidence 67999999999999999 999999998
No 127
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=86.03 E-value=1.6 Score=41.73 Aligned_cols=51 Identities=10% Similarity=-0.025 Sum_probs=36.0
Q ss_pred cchhhhhhcCcceEeccccccchhhhhhhh----ccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 265 QSALEALSHGVPINGWPLAAEQFYNSNLLG----EEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 265 ~s~~eal~~GvP~l~~P~~~DQ~~na~~v~----~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
.++.||+++|+|+|+.-..+.- ..++ +. ..|.... ++++++++|.++++++
T Consensus 339 i~~lEAMa~G~pvIa~~~ggp~----~~iv~~~~~g-~~G~l~~-------d~~~la~ai~~ll~~~ 393 (419)
T cd03806 339 IGVVEYMAAGLIPLAHASGGPL----LDIVVPWDGG-PTGFLAS-------TAEEYAEAIEKILSLS 393 (419)
T ss_pred cHHHHHHHcCCcEEEEcCCCCc----hheeeccCCC-CceEEeC-------CHHHHHHHHHHHHhCC
Confidence 5889999999999986543321 1222 23 4666531 6899999999999976
No 128
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=85.52 E-value=3 Score=32.63 Aligned_cols=60 Identities=22% Similarity=0.161 Sum_probs=39.0
Q ss_pred cCCcchhhhhhcCcceEeccccc--------cchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHh
Q 044624 262 DGTQSALEALSHGVPINGWPLAA--------EQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVM 324 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~--------DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll 324 (358)
||.||++.++.-++|.+++|-.. -|-..|..+++. +.=+.... ....-.+.++....+++
T Consensus 73 aG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~sp--te~~L~a~l~~s~~~v~ 140 (161)
T COG5017 73 AGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVACSP--TELVLQAGLQVSVADVL 140 (161)
T ss_pred cCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEEcC--CchhhHHhHhhhhhhhc
Confidence 99999999999999999999543 356677777755 55444432 01223344444444444
No 129
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=85.34 E-value=2.2 Score=43.75 Aligned_cols=117 Identities=16% Similarity=0.225 Sum_probs=61.2
Q ss_pred CCcChHHHHHHHHH--------HHhCCCc----EEEEEeCCcch-------hhhhhcCCCCCCeEEEeccCCccCCCCCC
Q 044624 6 AQGHVIPFLALAHH--------LESTKNY----TIAFVNTHLNI-------KKIKSSLPQSSPIHFLETPFNIIDHDLPP 66 (358)
Q Consensus 6 ~~GH~~P~l~La~~--------L~~~rGh----~Vt~~t~~~~~-------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 66 (358)
+.|+..=.+.||++ |++ +|| +|+++|-.... +.++... ..+++++..+|+.. ..
T Consensus 278 tGGq~vYV~elaraL~~~~~~~La~-~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~-~~~~~~I~rvp~g~-----~~ 350 (784)
T TIGR02470 278 TGGQVVYILDQVRALENEMLQRIKL-QGLEITPKILIVTRLIPDAEGTTCNQRLEKVY-GTEHAWILRVPFRT-----EN 350 (784)
T ss_pred CCCceeHHHHHHHHHHHHHHHHHHh-cCCCccceEEEEecCCCCcccccccccccccc-CCCceEEEEecCCC-----Cc
Confidence 45666667778876 568 999 77799854321 1111110 01677877777531 11
Q ss_pred CCCCCCCCCchHHHHHHHHHhhchHHHHH-HHHHHhhhcCCCCCcEEEECCCCc--cHHHHHHHhCCceEEEcc
Q 044624 67 CTENTDSHPFDVVRKLLEATLSFKPHFKK-LIIDLIDEQNGHKPLCIITDMFFG--WCKEIAQEYGIFHAIFIE 137 (358)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~~~~~~~~~~pd~vV~D~~~~--~~~~~A~~lgiP~v~~~~ 137 (358)
........+. ..++..+..+...+.+ +..+. .+ +||+|+...... .+..+|+++|||.+....
T Consensus 351 ~~~~~~~i~k---~~l~p~l~~f~~~~~~~~~~~~----~~-~pDlIHahy~d~glva~lla~~lgVP~v~t~H 416 (784)
T TIGR02470 351 GIILRNWISR---FEIWPYLETFAEDAEKEILAEL----QG-KPDLIIGNYSDGNLVASLLARKLGVTQCTIAH 416 (784)
T ss_pred ccccccccCH---HHHHHHHHHHHHHHHHHHHHhc----CC-CCCEEEECCCchHHHHHHHHHhcCCCEEEECC
Confidence 1000011121 2222233333333332 22222 23 799999987554 256799999999776543
No 130
>PLN00142 sucrose synthase
Probab=84.44 E-value=2.5 Score=43.50 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=24.9
Q ss_pred CCcEEEECCCCc--cHHHHHHHhCCceEEEcch
Q 044624 108 KPLCIITDMFFG--WCKEIAQEYGIFHAIFIEG 138 (358)
Q Consensus 108 ~pd~vV~D~~~~--~~~~~A~~lgiP~v~~~~~ 138 (358)
+||+|....... .|..+++++|||.+....+
T Consensus 408 ~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~Hs 440 (815)
T PLN00142 408 KPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHA 440 (815)
T ss_pred CCCEEEECCccHHHHHHHHHHHhCCCEEEEccc
Confidence 799999997655 3567999999999987654
No 131
>PLN02275 transferase, transferring glycosyl groups
Probab=84.27 E-value=21 Score=33.29 Aligned_cols=48 Identities=6% Similarity=0.135 Sum_probs=35.6
Q ss_pred cchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHh
Q 044624 265 QSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVM 324 (358)
Q Consensus 265 ~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll 324 (358)
++++||+++|+|+|+.... .+...+.+. +.|+.++ +.++++++|.+++
T Consensus 324 ~~llEAmA~G~PVVa~~~g----g~~eiv~~g-~~G~lv~-------~~~~la~~i~~l~ 371 (371)
T PLN02275 324 MKVVDMFGCGLPVCAVSYS----CIGELVKDG-KNGLLFS-------SSSELADQLLELL 371 (371)
T ss_pred HHHHHHHHCCCCEEEecCC----ChHHHccCC-CCeEEEC-------CHHHHHHHHHHhC
Confidence 4799999999999997532 245555444 6788773 3789999998875
No 132
>PLN02275 transferase, transferring glycosyl groups
Probab=82.95 E-value=1.8 Score=40.55 Aligned_cols=51 Identities=12% Similarity=-0.108 Sum_probs=32.9
Q ss_pred ccCCCcChHHHHHHHHHHHhCCCc-EEEEEeCCcchhhhhhcCCCCCCeEEEecc
Q 044624 3 PFMAQGHVIPFLALAHHLESTKNY-TIAFVNTHLNIKKIKSSLPQSSPIHFLETP 56 (358)
Q Consensus 3 ~~p~~GH~~P~l~La~~L~~~rGh-~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p 56 (358)
..+-.|.-.-|..++..|++ +|| +|++++........+.... .++++..++
T Consensus 11 ~~~~~g~~~r~~~~~~~l~~-~~~~~v~vi~~~~~~~~~~~~~~--~~v~v~r~~ 62 (371)
T PLN02275 11 VLGDFGRSPRMQYHALSLAR-QASFQVDVVAYGGSEPIPALLNH--PSIHIHLMV 62 (371)
T ss_pred EecCCCCCHHHHHHHHHHHh-cCCceEEEEEecCCCCCHHHhcC--CcEEEEECC
Confidence 34445666678889999999 987 7999986543221111111 568888765
No 133
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=82.72 E-value=1.3 Score=40.80 Aligned_cols=45 Identities=13% Similarity=0.122 Sum_probs=29.9
Q ss_pred cChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEecc
Q 044624 8 GHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETP 56 (358)
Q Consensus 8 GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p 56 (358)
|=-.-...|+++|.+ +||+|++++.......... .. .++++..++
T Consensus 16 G~~~~~~~la~~L~~-~g~~v~v~~~~~~~~~~~~-~~--~~i~~~~~~ 60 (363)
T cd04955 16 GFETFVEELAPRLVA-RGHEVTVYCRSPYPKQKET-EY--NGVRLIHIP 60 (363)
T ss_pred cHHHHHHHHHHHHHh-cCCCEEEEEccCCCCCccc-cc--CCceEEEcC
Confidence 334456789999999 9999999998644322100 01 577777665
No 134
>PLN02949 transferase, transferring glycosyl groups
Probab=82.26 E-value=1.6 Score=42.21 Aligned_cols=66 Identities=11% Similarity=-0.032 Sum_probs=39.2
Q ss_pred cchhhhhhcCcceEeccccccchhhhhhhhc--cccceEEecccCCccccHHHHHHHHHHHhcC-CCCCHHHHHHHHHH
Q 044624 265 QSALEALSHGVPINGWPLAAEQFYNSNLLGE--EVGVCAEVARGMNCAVLKEHIVVKIELVMNE-TEKGKPMRMKDLEV 340 (358)
Q Consensus 265 ~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~--~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~-~~~~~~~r~~a~~l 340 (358)
.+++||+++|+|.|+....+--.+ .+.+ .-..|... -+.++++++|.+++++ +++.+++++++++.
T Consensus 369 ivvlEAMA~G~PVIa~~~gGp~~e---IV~~~~~g~tG~l~-------~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~ 437 (463)
T PLN02949 369 ISVVEYMAAGAVPIAHNSAGPKMD---IVLDEDGQQTGFLA-------TTVEEYADAILEVLRMRETERLEIAAAARKR 437 (463)
T ss_pred hHHHHHHHcCCcEEEeCCCCCcce---eeecCCCCcccccC-------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 489999999999999865431000 0111 00123222 2689999999999985 31233455555543
No 135
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=82.14 E-value=4.3 Score=37.95 Aligned_cols=49 Identities=22% Similarity=0.158 Sum_probs=32.8
Q ss_pred cchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 265 QSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 265 ~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
+.+.|++++|+|+|+.++ + ..+ +. +-|..+.. -+.+++.++|.+++.++
T Consensus 293 ~Kl~EylA~G~PVVat~~----~---~~~-~~-~~~~~~~~-----~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 293 LKLFEYLAAGKPVVATPL----P---EVR-RY-EDEVVLIA-----DDPEEFVAAIEKALLED 341 (373)
T ss_pred chHHHHhccCCCEEecCc----H---HHH-hh-cCcEEEeC-----CCHHHHHHHHHHHHhcC
Confidence 458999999999998763 1 122 22 22333332 27899999999977654
No 136
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=81.73 E-value=7.1 Score=34.18 Aligned_cols=98 Identities=14% Similarity=0.097 Sum_probs=51.8
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHHHHHHhhchHH
Q 044624 13 FLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKLLEATLSFKPH 92 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (358)
+..|+++|+. +++|+++.+...++-......-...+++..+. ........-+. +...-.
T Consensus 16 i~aL~~al~~--~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~---------~~~~av~GTPa----------DCV~la 74 (252)
T COG0496 16 IRALARALRE--GADVTVVAPDREQSGASHSLTLHEPLRVRQVD---------NGAYAVNGTPA----------DCVILG 74 (252)
T ss_pred HHHHHHHHhh--CCCEEEEccCCCCcccccccccccCceeeEec---------cceEEecCChH----------HHHHHH
Confidence 4567777774 99999999987765433211000112221111 00000011111 112234
Q ss_pred HHHHHHHHhhhcCCCCCcEEEECCC-------------CccHHHHHHHhCCceEEEcch
Q 044624 93 FKKLIIDLIDEQNGHKPLCIITDMF-------------FGWCKEIAQEYGIFHAIFIEG 138 (358)
Q Consensus 93 l~~ll~~~~~~~~~~~pd~vV~D~~-------------~~~~~~~A~~lgiP~v~~~~~ 138 (358)
+..++++. +||+||+... +.++..=|..+|||.|.++..
T Consensus 75 l~~l~~~~-------~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 75 LNELLKEP-------RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred HHHhccCC-------CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 45565554 6999998653 234445567889999998765
No 137
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=81.30 E-value=9.6 Score=33.40 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=21.3
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhhh
Q 044624 13 FLALAHHLESTKNYTIAFVNTHLNIKKI 40 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~~~~~~ 40 (358)
+..|+++|.+ .| +|+++.+...+.-.
T Consensus 16 i~aL~~~l~~-~g-~V~VvAP~~~~Sg~ 41 (244)
T TIGR00087 16 IRALYQALKE-LG-EVTVVAPARQRSGT 41 (244)
T ss_pred HHHHHHHHHh-CC-CEEEEeCCCCcccc
Confidence 5679999999 88 89999998776544
No 138
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=81.16 E-value=2.7 Score=40.78 Aligned_cols=55 Identities=9% Similarity=0.026 Sum_probs=37.1
Q ss_pred cchhhhhhcCcceEeccccc--cchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhc
Q 044624 265 QSALEALSHGVPINGWPLAA--EQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMN 325 (358)
Q Consensus 265 ~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~ 325 (358)
.+.+||+++|+|.|+-...+ |.-.+...-... +.|+.++. -+++++.++|.+++.
T Consensus 380 l~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~-----~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 380 LTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEE-----YDPGALLAALSRALR 436 (473)
T ss_pred HHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCC-----CCHHHHHHHHHHHHH
Confidence 37899999999998865533 222211111122 67888764 578899999999887
No 139
>PRK00654 glgA glycogen synthase; Provisional
Probab=80.22 E-value=3 Score=40.38 Aligned_cols=55 Identities=13% Similarity=0.023 Sum_probs=37.6
Q ss_pred cchhhhhhcCcceEeccccc--cchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhc
Q 044624 265 QSALEALSHGVPINGWPLAA--EQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMN 325 (358)
Q Consensus 265 ~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~ 325 (358)
.+.+||+++|+|.|+.-..+ |.-.+...-.+. +.|+.++. -+++++.++|.++++
T Consensus 371 l~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-----~d~~~la~~i~~~l~ 427 (466)
T PRK00654 371 LTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-----FNAEDLLRALRRALE 427 (466)
T ss_pred HHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-----CCHHHHHHHHHHHHH
Confidence 48999999999999865432 322222111233 67888864 568999999999886
No 140
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=78.95 E-value=4.2 Score=37.73 Aligned_cols=110 Identities=17% Similarity=0.148 Sum_probs=61.2
Q ss_pred CCCceEEEEeccCCCCC-H---HHHHHHHHHHHhC-CCcEEEEecCCC-----------CCCCCCCCCc-----ccc---
Q 044624 206 PCRSVLYVSFGSQDTIA-V---SQMVQLAMALEAS-GKNFIWIVRPPI-----------GFDINSEFRA-----NDA--- 261 (358)
Q Consensus 206 ~~~~vvyvs~GS~~~~~-~---~~~~~~~~al~~~-~~~~lw~~~~~~-----------~~~~~~~~~~-----~wl--- 261 (358)
.+++.++|++=...... + .++.+++++|.+. +.++||.+.... .+ .+..... +++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~-~~v~~~~~l~~~~~l~ll 256 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKY-DNVRLIEPLGYEEYLSLL 256 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT--TTEEEE----HHHHHHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhccc-CCEEEECCCCHHHHHHHH
Confidence 46679999996666655 3 3455566667666 778999987432 11 1100000 111
Q ss_pred -------cCCcchh-hhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 -------DGTQSAL-EALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 -------gG~~s~~-eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|-.+++. ||.+.|+|.|.+=-.++-+ .-+ .. |..+-+. .+++++.+++++++++.
T Consensus 257 ~~a~~vvgdSsGI~eEa~~lg~P~v~iR~~geRq---e~r-~~-~~nvlv~------~~~~~I~~ai~~~l~~~ 319 (346)
T PF02350_consen 257 KNADLVVGDSSGIQEEAPSLGKPVVNIRDSGERQ---EGR-ER-GSNVLVG------TDPEAIIQAIEKALSDK 319 (346)
T ss_dssp HHESEEEESSHHHHHHGGGGT--EEECSSS-S-H---HHH-HT-TSEEEET------SSHHHHHHHHHHHHH-H
T ss_pred hcceEEEEcCccHHHHHHHhCCeEEEecCCCCCH---HHH-hh-cceEEeC------CCHHHHHHHHHHHHhCh
Confidence 6566888 9999999999992222221 111 12 4444442 67999999999999874
No 141
>PRK00654 glgA glycogen synthase; Provisional
Probab=78.28 E-value=19 Score=34.88 Aligned_cols=27 Identities=15% Similarity=-0.006 Sum_probs=21.8
Q ss_pred cChHHHHHHHHHHHhCCCcEEEEEeCCc
Q 044624 8 GHVIPFLALAHHLESTKNYTIAFVNTHL 35 (358)
Q Consensus 8 GH~~P~l~La~~L~~~rGh~Vt~~t~~~ 35 (358)
|--.-+-.|+++|++ +||+|+++++..
T Consensus 18 Gl~~~v~~L~~~L~~-~G~~V~v~~p~y 44 (466)
T PRK00654 18 GLGDVVGALPKALAA-LGHDVRVLLPGY 44 (466)
T ss_pred cHHHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 444455779999999 999999999753
No 142
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=78.28 E-value=4.9 Score=38.81 Aligned_cols=68 Identities=13% Similarity=0.040 Sum_probs=43.8
Q ss_pred cCC-cchhhhhhcCcc----eEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHH
Q 044624 262 DGT-QSALEALSHGVP----INGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMK 336 (358)
Q Consensus 262 gG~-~s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~ 336 (358)
-|+ ++..||+++|+| +|+--+.+- +..+ +-|+.++. -+.++++++|.++|+++ . ++.+++
T Consensus 366 EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~l----~~gllVnP-----~d~~~lA~aI~~aL~~~-~-~er~~r 430 (456)
T TIGR02400 366 DGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQEL----NGALLVNP-----YDIDGMADAIARALTMP-L-EEREER 430 (456)
T ss_pred cccCccHHHHHHhcCCCCceEEEeCCCCC----hHHh----CCcEEECC-----CCHHHHHHHHHHHHcCC-H-HHHHHH
Confidence 454 477899999999 555544432 2222 24677765 67899999999999866 1 134445
Q ss_pred HHHHHHHH
Q 044624 337 DLEVKEII 344 (358)
Q Consensus 337 a~~l~~~~ 344 (358)
.+++.+.+
T Consensus 431 ~~~~~~~v 438 (456)
T TIGR02400 431 HRAMMDKL 438 (456)
T ss_pred HHHHHHHH
Confidence 55544443
No 143
>PLN02501 digalactosyldiacylglycerol synthase
Probab=77.91 E-value=4 Score=41.25 Aligned_cols=53 Identities=15% Similarity=0.067 Sum_probs=37.8
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|=-++++||+++|+|+|+.-.-+... + .. |.+..+. -+.+++.++|.++|.|+
T Consensus 630 gFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~-g~nGll~------~D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 630 VLCTATAEALAMGKFVVCADHPSNEF-----F-RS-FPNCLTY------KTSEDFVAKVKEALANE 682 (794)
T ss_pred cchHHHHHHHHcCCCEEEecCCCCce-----E-ee-cCCeEec------CCHHHHHHHHHHHHhCc
Confidence 55578999999999999987654321 2 23 3222232 25899999999999988
No 144
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=77.22 E-value=4.7 Score=38.55 Aligned_cols=76 Identities=9% Similarity=0.077 Sum_probs=51.1
Q ss_pred CcchhhhhhcCcceEeccccccchhhhhhhhccccceEE-ecccCCccccHHHHHHHHHHHhcCCCC-CHHHHHHHHHHH
Q 044624 264 TQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAE-VARGMNCAVLKEHIVVKIELVMNETEK-GKPMRMKDLEVK 341 (358)
Q Consensus 264 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~-l~~~~~~~~~~~~l~~ai~~ll~~~~~-~~~~r~~a~~l~ 341 (358)
+.++.-|+..|||.++++. |...... +. .+|..-. ++. ..++.++|.+.++++++|.++ .+.+++++.+++
T Consensus 336 lHa~I~a~~~gvP~i~i~Y--~~K~~~~-~~-~lg~~~~~~~~---~~l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r 408 (426)
T PRK10017 336 LHSAIISMNFGTPAIAINY--EHKSAGI-MQ-QLGLPEMAIDI---RHLLDGSLQAMVADTLGQLPALNARLAEAVSRER 408 (426)
T ss_pred chHHHHHHHcCCCEEEeee--hHHHHHH-HH-HcCCccEEech---hhCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 5688899999999999987 4444333 33 3477644 454 578889999999999988521 223455555555
Q ss_pred HHHHH
Q 044624 342 EIIDN 346 (358)
Q Consensus 342 ~~~~~ 346 (358)
++..+
T Consensus 409 ~~~~~ 413 (426)
T PRK10017 409 QTGMQ 413 (426)
T ss_pred HHHHH
Confidence 54444
No 145
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=76.85 E-value=15 Score=32.41 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchh
Q 044624 13 FLALAHHLESTKNYTIAFVNTHLNIK 38 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~~~~ 38 (358)
+..|+++|.+ +|+|+++.+...+.
T Consensus 16 l~aL~~~l~~--~~~V~VvAP~~~~S 39 (253)
T PRK13933 16 INTLAELLSK--YHEVIIVAPENQRS 39 (253)
T ss_pred HHHHHHHHHh--CCcEEEEccCCCCc
Confidence 6778888865 57999999877664
No 146
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=76.56 E-value=17 Score=32.04 Aligned_cols=24 Identities=21% Similarity=0.037 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcch
Q 044624 13 FLALAHHLESTKNYTIAFVNTHLNI 37 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~~~ 37 (358)
-..|++.|.+ +||+|+..+.....
T Consensus 12 gr~la~~L~~-~g~~v~~s~~t~~~ 35 (256)
T TIGR00715 12 SRAIAKGLIA-QGIEILVTVTTSEG 35 (256)
T ss_pred HHHHHHHHHh-CCCeEEEEEccCCc
Confidence 4678999999 99999988776543
No 147
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=75.17 E-value=29 Score=30.68 Aligned_cols=40 Identities=5% Similarity=-0.289 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEECCCCcc------HHHHHHHhCCceEEEcch
Q 044624 92 HFKKLIIDLIDEQNGHKPLCIITDMFFGW------CKEIAQEYGIFHAIFIEG 138 (358)
Q Consensus 92 ~l~~ll~~~~~~~~~~~pd~vV~D~~~~~------~~~~A~~lgiP~v~~~~~ 138 (358)
.+.+.++.. .||+|++.....- +..+|+.||+|++.+...
T Consensus 103 ~La~ai~~~-------~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 103 ALAAAAQKA-------GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHh-------CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 344555655 7999999776542 457999999999987654
No 148
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=73.61 E-value=29 Score=30.60 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhh
Q 044624 13 FLALAHHLESTKNYTIAFVNTHLNIKK 39 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~~~~~ 39 (358)
+..|+++|.+ .| +|+++.+...+.-
T Consensus 21 i~aL~~~l~~-~g-~V~VvAP~~~~Sg 45 (257)
T PRK13932 21 IHVLAASMKK-IG-RVTVVAPAEPHSG 45 (257)
T ss_pred HHHHHHHHHh-CC-CEEEEcCCCCCCC
Confidence 6679999999 88 7999988766543
No 149
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=73.20 E-value=19 Score=31.75 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhh
Q 044624 13 FLALAHHLESTKNYTIAFVNTHLNIKK 39 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~~~~~ 39 (358)
+..|+++|++ +|+|+++.+...+.-
T Consensus 16 i~aL~~~l~~--~~~V~VvAP~~~qSg 40 (253)
T PRK13935 16 IIILAEYLSE--KHEVFVVAPDKERSA 40 (253)
T ss_pred HHHHHHHHHh--CCcEEEEccCCCCcc
Confidence 5678888865 579999998776543
No 150
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=73.08 E-value=30 Score=25.87 Aligned_cols=83 Identities=16% Similarity=0.035 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHHHHHHhh
Q 044624 9 HVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKLLEATLS 88 (358)
Q Consensus 9 H~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (358)
+-.=++++++.|.+ .|+++ ++++...+.+.. .|+.+..+... . .
T Consensus 11 ~k~~~~~~~~~l~~-~G~~l--~aT~gT~~~l~~-----~gi~~~~v~~~------~-~--------------------- 54 (110)
T cd01424 11 DKPEAVEIAKRLAE-LGFKL--VATEGTAKYLQE-----AGIPVEVVNKV------S-E--------------------- 54 (110)
T ss_pred cHhHHHHHHHHHHH-CCCEE--EEchHHHHHHHH-----cCCeEEEEeec------C-C---------------------
Confidence 34457899999999 99988 345566667776 67776544311 0 0
Q ss_pred chHHHHHHHHHHhhhcCCCCCcEEEECCC-------CccHHHHHHHhCCceEE
Q 044624 89 FKPHFKKLIIDLIDEQNGHKPLCIITDMF-------FGWCKEIAQEYGIFHAI 134 (358)
Q Consensus 89 ~~~~l~~ll~~~~~~~~~~~pd~vV~D~~-------~~~~~~~A~~lgiP~v~ 134 (358)
-.+.+.+++++- ++|+||.-.. .+.....|-++|||++.
T Consensus 55 ~~~~i~~~i~~~-------~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 GRPNIVDLIKNG-------EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred CchhHHHHHHcC-------CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 112334555543 7999998542 23445689999999885
No 151
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=72.83 E-value=21 Score=25.67 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEE
Q 044624 13 FLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHF 52 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~ 52 (358)
++.+++.|.+ .|+++ ++ ++...+.++. .|+.+
T Consensus 2 ~~~~~~~l~~-lG~~i-~A-T~gTa~~L~~-----~Gi~~ 33 (90)
T smart00851 2 LVELAKRLAE-LGFEL-VA-TGGTAKFLRE-----AGLPV 33 (90)
T ss_pred HHHHHHHHHH-CCCEE-EE-ccHHHHHHHH-----CCCcc
Confidence 4689999999 99998 34 4455666766 56654
No 152
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=72.81 E-value=26 Score=30.83 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhh
Q 044624 13 FLALAHHLESTKNYTIAFVNTHLNIKK 39 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~~~~~ 39 (358)
+..|+++|.+ . |+|+++.+...+.-
T Consensus 16 i~aL~~~l~~-~-~~V~VvAP~~~qSg 40 (250)
T PRK00346 16 IRALAEALRE-L-ADVTVVAPDRERSG 40 (250)
T ss_pred HHHHHHHHHh-C-CCEEEEeCCCCCcC
Confidence 6679999999 8 79999998776543
No 153
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=72.34 E-value=29 Score=31.61 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=32.3
Q ss_pred CcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 264 TQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 264 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
-++++||+++|+|+|+....+ +...+.. .|...+. . +.++++|.++++|+
T Consensus 282 ~~~~~EAma~G~PvI~s~~~~----~~e~~~~---~g~~~~~---~----~~l~~~i~~l~~~~ 331 (363)
T cd04955 282 NPSLLEAMAYGCPVLASDNPF----NREVLGD---KAIYFKV---G----DDLASLLEELEADP 331 (363)
T ss_pred ChHHHHHHHcCCCEEEecCCc----cceeecC---CeeEecC---c----hHHHHHHHHHHhCH
Confidence 357999999999999875432 2222222 2333332 1 12999999999987
No 154
>PLN02846 digalactosyldiacylglycerol synthase
Probab=72.12 E-value=8.1 Score=37.33 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=37.1
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
+=-++++||+++|+|+|+.-.-+ + ..+.+. +-|...+ +.+++.+++.++|.++
T Consensus 312 t~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~~-------~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 312 VVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTYD-------DGKGFVRATLKALAEE 364 (462)
T ss_pred cchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEecC-------CHHHHHHHHHHHHccC
Confidence 55578999999999999976443 2 333222 4444442 4789999999999865
No 155
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=71.97 E-value=29 Score=26.16 Aligned_cols=83 Identities=17% Similarity=0.056 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHHHHHHhhch
Q 044624 11 IPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKLLEATLSFK 90 (358)
Q Consensus 11 ~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (358)
.=++.+++.|.+ .||++ +.++...+.+.. .|+.+..+... +.. -.
T Consensus 12 ~~~~~~a~~l~~-~G~~i--~AT~gTa~~L~~-----~Gi~~~~v~~~------~~~---------------------g~ 56 (112)
T cd00532 12 AMLVDLAPKLSS-DGFPL--FATGGTSRVLAD-----AGIPVRAVSKR------HED---------------------GE 56 (112)
T ss_pred HHHHHHHHHHHH-CCCEE--EECcHHHHHHHH-----cCCceEEEEec------CCC---------------------CC
Confidence 347899999999 99988 345566667776 67776644311 110 01
Q ss_pred HHHHHHHHH-HhhhcCCCCCcEEEE--CCCC--------ccHHHHHHHhCCceEEE
Q 044624 91 PHFKKLIID-LIDEQNGHKPLCIIT--DMFF--------GWCKEIAQEYGIFHAIF 135 (358)
Q Consensus 91 ~~l~~ll~~-~~~~~~~~~pd~vV~--D~~~--------~~~~~~A~~lgiP~v~~ 135 (358)
+.+.+++++ - +.|+||. |... +.....|-++|||+++-
T Consensus 57 ~~i~~~i~~~g-------~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 57 PTVDAAIAEKG-------KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred cHHHHHHhCCC-------CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 233445554 3 7899988 3222 12235788999998863
No 156
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=71.72 E-value=15 Score=34.02 Aligned_cols=106 Identities=12% Similarity=0.019 Sum_probs=57.9
Q ss_pred cCCCcChHHHHHHHHHHHhCC-CcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHH
Q 044624 4 FMAQGHVIPFLALAHHLESTK-NYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKL 82 (358)
Q Consensus 4 ~p~~GH~~P~l~La~~L~~~r-Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
..+..|+.=+.+|.++|.+ + +.++.++.|............. -++.. .+.+ .+. . .. . ..
T Consensus 7 ~gtr~~~~~~~p~~~~l~~-~~~~~~~~~~tg~h~~~~~~~~~~-~~i~~-~~~~-----~~~----~-~~--~----~~ 67 (365)
T TIGR00236 7 LGTRPEAIKMAPLIRALKK-YPEIDSYVIVTAQHREMLDQVLDL-FHLPP-DYDL-----NIM----S-PG--Q----TL 67 (365)
T ss_pred EecCHHHHHHHHHHHHHhh-CCCCCEEEEEeCCCHHHHHHHHHh-cCCCC-Ceee-----ecC----C-CC--C----CH
Confidence 4556778888999999998 6 5666666665444333221000 11110 0000 000 0 00 0 01
Q ss_pred HHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECC--CC-ccHHHHHHHhCCceEEE
Q 044624 83 LEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDM--FF-GWCKEIAQEYGIFHAIF 135 (358)
Q Consensus 83 ~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~--~~-~~~~~~A~~lgiP~v~~ 135 (358)
...+......+.+++++. +||+|++-. .. .++..+|..+|||++.+
T Consensus 68 ~~~~~~~~~~l~~~l~~~-------~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 68 GEITSNMLEGLEELLLEE-------KPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHHHHHHHHHHHHHc-------CCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 112222335667778877 899999864 22 23567888999999865
No 157
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=71.71 E-value=1.6 Score=34.68 Aligned_cols=71 Identities=23% Similarity=0.309 Sum_probs=51.4
Q ss_pred cCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcc-C
Q 044624 273 HGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNAFRN-D 351 (358)
Q Consensus 273 ~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~~l~~~~~~a~~~-g 351 (358)
+|+| .|....+-.+|+.+++. --+|+ .-..+.+.+.+.+|+.|.. +-+-.+.+++..+.++... +
T Consensus 74 CGkp---yPWt~~~L~aa~el~ee---~eeLs-----~deke~~~~sl~dL~~d~P---kT~vA~~rfKk~~~K~g~~v~ 139 (158)
T PF10083_consen 74 CGKP---YPWTENALEAANELIEE---DEELS-----PDEKEQFKESLPDLTKDTP---KTKVAATRFKKILSKAGSIVG 139 (158)
T ss_pred CCCC---CchHHHHHHHHHHHHHH---hhcCC-----HHHHHHHHhhhHHHhhcCC---ccHHHHHHHHHHHHHHhHHHH
Confidence 4555 68888899999988865 22343 2457899999999997631 6777788888888777766 6
Q ss_pred ccccCC
Q 044624 352 ENLRDL 357 (358)
Q Consensus 352 ss~~~~ 357 (358)
+..+|+
T Consensus 140 ~~~~dI 145 (158)
T PF10083_consen 140 DAIRDI 145 (158)
T ss_pred HHHHHH
Confidence 666554
No 158
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=71.62 E-value=5.6 Score=29.04 Aligned_cols=84 Identities=20% Similarity=0.095 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHHHHHHhhchHH
Q 044624 13 FLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKLLEATLSFKPH 92 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (358)
++++|+.|.+ .||+ ++.|+...+.+.+ .|++...+-.. .+.+.. ... . ..
T Consensus 2 ~~~~a~~l~~-lG~~--i~AT~gTa~~L~~-----~Gi~~~~v~~~---~~~~~~---~~g----~------------~~ 51 (95)
T PF02142_consen 2 IVPLAKRLAE-LGFE--IYATEGTAKFLKE-----HGIEVTEVVNK---IGEGES---PDG----R------------VQ 51 (95)
T ss_dssp HHHHHHHHHH-TTSE--EEEEHHHHHHHHH-----TT--EEECCEE---HSTG-G---GTH----C------------HH
T ss_pred HHHHHHHHHH-CCCE--EEEChHHHHHHHH-----cCCCceeeeee---cccCcc---CCc----h------------hH
Confidence 5789999999 9965 4556667777777 77875533210 000000 000 0 03
Q ss_pred HHHHHHHHhhhcCCCCCcEEEECCCCccH---------HHHHHHhCCceE
Q 044624 93 FKKLIIDLIDEQNGHKPLCIITDMFFGWC---------KEIAQEYGIFHA 133 (358)
Q Consensus 93 l~~ll~~~~~~~~~~~pd~vV~D~~~~~~---------~~~A~~lgiP~v 133 (358)
+.+++++- +.|+||.-..-... ..+|.+++||++
T Consensus 52 i~~~i~~~-------~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 52 IMDLIKNG-------KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHTT-------SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHcC-------CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 44555554 89999987754321 357889999976
No 159
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=71.34 E-value=8.5 Score=37.25 Aligned_cols=53 Identities=15% Similarity=0.028 Sum_probs=35.3
Q ss_pred cCCc-chhhhhhcCcc----eEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQ-SALEALSHGVP----INGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~-s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
-|+| +++||+++|+| +|+--..+ .+... .-|+.++. -+.++++++|.++++++
T Consensus 371 Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~~~~----~~g~lv~p-----~d~~~la~ai~~~l~~~ 428 (460)
T cd03788 371 DGMNLVAKEYVACQDDDPGVLILSEFAG----AAEEL----SGALLVNP-----YDIDEVADAIHRALTMP 428 (460)
T ss_pred cccCcccceeEEEecCCCceEEEecccc----chhhc----CCCEEECC-----CCHHHHHHHHHHHHcCC
Confidence 4554 67999999999 44432222 11111 33667764 56899999999999876
No 160
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=71.09 E-value=7.3 Score=37.63 Aligned_cols=99 Identities=8% Similarity=0.080 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhCCC--cEEEEecCCCCCC-----C-------CCCCCcccccCCcchhhhhhcCcceEeccccccchhh
Q 044624 224 SQMVQLAMALEASGK--NFIWIVRPPIGFD-----I-------NSEFRANDADGTQSALEALSHGVPINGWPLAAEQFYN 289 (358)
Q Consensus 224 ~~~~~~~~al~~~~~--~~lw~~~~~~~~~-----~-------~~~~~~~wlgG~~s~~eal~~GvP~l~~P~~~DQ~~n 289 (358)
..+.++.+-+++.+. .++|-+....... . .+.. +-+| -++.||+++|+|+++.= +-.-
T Consensus 329 ~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~--E~FG--iv~IEAMa~glPvvAt~----~GGP 400 (495)
T KOG0853|consen 329 EYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPAN--EHFG--IVPIEAMACGLPVVATN----NGGP 400 (495)
T ss_pred HHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCC--CCcc--ceeHHHHhcCCCEEEec----CCCc
Confidence 345677777776643 6777655432100 0 0000 1113 58999999999999862 2233
Q ss_pred hhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 044624 290 SNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKDL 338 (358)
Q Consensus 290 a~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a~ 338 (358)
+.-++.. -.|.-+++ +.-....++.++.++..|+ .++.+..
T Consensus 401 ~EiV~~~-~tG~l~dp---~~e~~~~~a~~~~kl~~~p----~l~~~~~ 441 (495)
T KOG0853|consen 401 AEIVVHG-VTGLLIDP---GQEAVAELADALLKLRRDP----ELWARMG 441 (495)
T ss_pred eEEEEcC-CcceeeCC---chHHHHHHHHHHHHHhcCH----HHHHHHH
Confidence 3333322 45777764 2333347999999999999 7755543
No 161
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=70.39 E-value=45 Score=31.77 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=24.3
Q ss_pred CCcEEEECCCCccHHHHHHH-hCCceEEEcchh
Q 044624 108 KPLCIITDMFFGWCKEIAQE-YGIFHAIFIEGG 139 (358)
Q Consensus 108 ~pd~vV~D~~~~~~~~~A~~-lgiP~v~~~~~~ 139 (358)
+||++|.+.....+..+++. .++|.+.+...|
T Consensus 107 ~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~P 139 (419)
T cd03806 107 VPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHYP 139 (419)
T ss_pred CCCEEEEcCCcccHHHHHHHhcCCeEEEEecCC
Confidence 79988888877777777775 478988876644
No 162
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=70.12 E-value=60 Score=26.65 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=24.2
Q ss_pred cccCCCcChHHHHHHHHHH-HhCCCcEEEEEeCCcc
Q 044624 2 LPFMAQGHVIPFLALAHHL-ESTKNYTIAFVNTHLN 36 (358)
Q Consensus 2 ~~~p~~GH~~P~l~La~~L-~~~rGh~Vt~~t~~~~ 36 (358)
+-..+.||..=|+.|.+.+ .+...++..++|..+.
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~ 38 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDK 38 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCc
Confidence 4467889999999999999 3314455555555443
No 163
>PLN02846 digalactosyldiacylglycerol synthase
Probab=70.08 E-value=54 Score=31.78 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhCCC-cEEEEEeCCc
Q 044624 11 IPFLALAHHLESTKN-YTIAFVNTHL 35 (358)
Q Consensus 11 ~P~l~La~~L~~~rG-h~Vt~~t~~~ 35 (358)
.-.+.++..|++ +| |+|+++.+..
T Consensus 23 ~s~~~~a~~L~~-~G~heV~vvaP~~ 47 (462)
T PLN02846 23 VNPLFRAAYLAK-DGDREVTLVIPWL 47 (462)
T ss_pred ccHHHHHHHHHh-cCCcEEEEEecCC
Confidence 445677779999 99 8999998853
No 164
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=69.62 E-value=29 Score=30.72 Aligned_cols=30 Identities=10% Similarity=0.055 Sum_probs=21.7
Q ss_pred CCcEEEECCC----------Cc---cHHHHHHHhCCceEEEcc
Q 044624 108 KPLCIITDMF----------FG---WCKEIAQEYGIFHAIFIE 137 (358)
Q Consensus 108 ~pd~vV~D~~----------~~---~~~~~A~~lgiP~v~~~~ 137 (358)
+||+||+... +. ++..-|..+|||.+.++.
T Consensus 87 ~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 87 PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 7999998653 33 334456678999999985
No 165
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=69.29 E-value=11 Score=37.29 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=28.4
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecc
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVAR 305 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~ 305 (358)
|--++++||+++|+|+|+.... .+...+.+. ..|..++.
T Consensus 484 Gfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG-~nG~LVp~ 522 (578)
T PRK15490 484 GLPNVLIEAQMVGVPVISTPAG----GSAECFIEG-VSGFILDD 522 (578)
T ss_pred CccHHHHHHHHhCCCEEEeCCC----CcHHHcccC-CcEEEECC
Confidence 4467999999999999987653 344555555 67888765
No 166
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=64.60 E-value=40 Score=29.91 Aligned_cols=26 Identities=8% Similarity=0.023 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCcchhh
Q 044624 12 PFLALAHHLESTKNYTIAFVNTHLNIKK 39 (358)
Q Consensus 12 P~l~La~~L~~~rGh~Vt~~t~~~~~~~ 39 (358)
-+..|+++|.+ .| +|+++.+...++-
T Consensus 15 Gi~aL~~al~~-~g-~V~VvAP~~eqSg 40 (266)
T PRK13934 15 GLRLLYEFVSP-LG-EVDVVAPETPKSA 40 (266)
T ss_pred HHHHHHHHHHh-CC-cEEEEccCCCCcc
Confidence 36789999999 88 7999988766543
No 167
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=63.83 E-value=5.1 Score=37.73 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=26.3
Q ss_pred cccC-CCcChHHHHHHHHHHHhCCCcEEEEEeCCc
Q 044624 2 LPFM-AQGHVIPFLALAHHLESTKNYTIAFVNTHL 35 (358)
Q Consensus 2 ~~~p-~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~ 35 (358)
+|+| -.|+-.=+..+.++|++ + |+||++|-..
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~-~-~~v~l~~~~~ 40 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAA-R-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHh-c-CcEEEEEeCC
Confidence 5666 45888889999999977 5 9999999754
No 168
>PLN02316 synthase/transferase
Probab=63.41 E-value=18 Score=38.53 Aligned_cols=58 Identities=10% Similarity=0.034 Sum_probs=38.2
Q ss_pred cCCcchhhhhhcCcceEeccccc--cchhhh-------hhhhccccceEEecccCCccccHHHHHHHHHHHhcC
Q 044624 262 DGTQSALEALSHGVPINGWPLAA--EQFYNS-------NLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNE 326 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~--DQ~~na-------~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~ 326 (358)
|| .+.+||+++|+|.|+....+ |..... ...-.. +.|..++. .+++.+..+|.++|.+
T Consensus 932 ~G-LvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~tGflf~~-----~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 932 CG-LTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-PNGFSFDG-----ADAAGVDYALNRAISA 998 (1036)
T ss_pred cc-HHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-CceEEeCC-----CCHHHHHHHHHHHHhh
Confidence 55 58999999999888765433 332221 100012 46777764 6789999999999975
No 169
>PRK14099 glycogen synthase; Provisional
Probab=63.04 E-value=14 Score=36.00 Aligned_cols=57 Identities=11% Similarity=0.111 Sum_probs=35.6
Q ss_pred cchhhhhhcCcceEeccccc--cchhhhhhh---hccccceEEecccCCccccHHHHHHHHHH---HhcCC
Q 044624 265 QSALEALSHGVPINGWPLAA--EQFYNSNLL---GEEVGVCAEVARGMNCAVLKEHIVVKIEL---VMNET 327 (358)
Q Consensus 265 ~s~~eal~~GvP~l~~P~~~--DQ~~na~~v---~~~~G~G~~l~~~~~~~~~~~~l~~ai~~---ll~~~ 327 (358)
.+.+||+++|+|.|+.-..+ |........ +.. +.|+.++. -+++++.++|.+ +++|+
T Consensus 384 l~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~-----~d~~~La~ai~~a~~l~~d~ 448 (485)
T PRK14099 384 LTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFSP-----VTADALAAALRKTAALFADP 448 (485)
T ss_pred HHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeCC-----CCHHHHHHHHHHHHHHhcCH
Confidence 48899999997766654322 322221111 111 46777764 578999999987 66676
No 170
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=62.26 E-value=14 Score=35.50 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=38.0
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|-.+++.||+.+|+|++..=... .+...+. . |.-+.. -+.+++.++|.++|+|+
T Consensus 359 ~~~~al~eA~~~G~pI~afd~t~---~~~~~i~-~---g~l~~~-----~~~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 359 EILNAVRRAFEYNLLILGFEETA---HNRDFIA-S---ENIFEH-----NEVDQLISKLKDLLNDP 412 (438)
T ss_pred cHHHHHHHHHHcCCcEEEEeccc---CCccccc-C---CceecC-----CCHHHHHHHHHHHhcCH
Confidence 77789999999999999874322 1112222 2 333432 45799999999999998
No 171
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=62.22 E-value=72 Score=28.04 Aligned_cols=38 Identities=8% Similarity=-0.009 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEECCCCccHH-------HHHHHhCCceEEEc
Q 044624 91 PHFKKLIIDLIDEQNGHKPLCIITDMFFGWCK-------EIAQEYGIFHAIFI 136 (358)
Q Consensus 91 ~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~-------~~A~~lgiP~v~~~ 136 (358)
+.+.+++++. ++++| .|.-.+++. .+++++|||++-|-
T Consensus 55 ~~l~~~l~~~-------~i~~V-IDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 55 EGLAAYLREE-------GIDLV-IDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred HHHHHHHHHC-------CCCEE-EECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 4556666665 67775 566666553 58889999999874
No 172
>PRK05595 replicative DNA helicase; Provisional
Probab=60.64 E-value=64 Score=31.05 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=29.3
Q ss_pred cCCCcChHHHHHHHHHHH-hCCCcEEEEEeCCcchhhh
Q 044624 4 FMAQGHVIPFLALAHHLE-STKNYTIAFVNTHLNIKKI 40 (358)
Q Consensus 4 ~p~~GH~~P~l~La~~L~-~~rGh~Vt~~t~~~~~~~~ 40 (358)
-|+.|--.-.+.+|..++ + +|+.|.|++.+...+.+
T Consensus 209 rpg~GKT~~al~ia~~~a~~-~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 209 RPSMGKTTFALNIAEYAALR-EGKSVAIFSLEMSKEQL 245 (444)
T ss_pred cCCCChHHHHHHHHHHHHHH-cCCcEEEEecCCCHHHH
Confidence 478888889999998876 6 79999999998766544
No 173
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=58.62 E-value=11 Score=29.06 Aligned_cols=24 Identities=8% Similarity=0.038 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCcc
Q 044624 12 PFLALAHHLESTKNYTIAFVNTHLN 36 (358)
Q Consensus 12 P~l~La~~L~~~rGh~Vt~~t~~~~ 36 (358)
-.+.|+++.++ |||+|.+++....
T Consensus 19 TT~alm~eAq~-RGhev~~~~~~dL 42 (119)
T PF02951_consen 19 TTFALMLEAQR-RGHEVFYYEPGDL 42 (119)
T ss_dssp HHHHHHHHHHH-TT-EEEEE-GGGE
T ss_pred hHHHHHHHHHH-CCCEEEEEEcCcE
Confidence 46789999999 9999999988654
No 174
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.50 E-value=28 Score=31.45 Aligned_cols=67 Identities=13% Similarity=0.196 Sum_probs=44.9
Q ss_pred cCCcchh-hhhhcCcceEeccccccchh--hhhhhhccccceEEecccCCccccHHHHHH-HHHHHhcCCCCCHHHHHHH
Q 044624 262 DGTQSAL-EALSHGVPINGWPLAAEQFY--NSNLLGEEVGVCAEVARGMNCAVLKEHIVV-KIELVMNETEKGKPMRMKD 337 (358)
Q Consensus 262 gG~~s~~-eal~~GvP~l~~P~~~DQ~~--na~~v~~~~G~G~~l~~~~~~~~~~~~l~~-ai~~ll~~~~~~~~~r~~a 337 (358)
|=.||.. +++--|||+|.+|-.+-|+. .|.+-.+.+|..+.+-. .+++.+. +.+++|.|+ .+..+.
T Consensus 317 gmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~------~~aq~a~~~~q~ll~dp----~r~~ai 386 (412)
T COG4370 317 GMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR------PEAQAAAQAVQELLGDP----QRLTAI 386 (412)
T ss_pred HhccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC------CchhhHHHHHHHHhcCh----HHHHHH
Confidence 5556554 46788999999999998864 56666667788777753 1233333 444599999 555444
Q ss_pred H
Q 044624 338 L 338 (358)
Q Consensus 338 ~ 338 (358)
+
T Consensus 387 r 387 (412)
T COG4370 387 R 387 (412)
T ss_pred H
Confidence 4
No 175
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=57.16 E-value=16 Score=34.44 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=29.8
Q ss_pred CCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhh
Q 044624 5 MAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIK 41 (358)
Q Consensus 5 p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~ 41 (358)
|+-|--.-+++++..|++ +| .|.+++.+.-..++.
T Consensus 102 PGIGKSTLLLQva~~lA~-~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 102 PGIGKSTLLLQVAARLAK-RG-KVLYVSGEESLQQIK 136 (456)
T ss_pred CCCCHHHHHHHHHHHHHh-cC-cEEEEeCCcCHHHHH
Confidence 667777889999999999 99 999999988776553
No 176
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=56.87 E-value=10 Score=29.63 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 044624 12 PFLALAHHLESTKNYTIAFVNTHLNIKKIKS 42 (358)
Q Consensus 12 P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~ 42 (358)
-.+-|+..|.+ +||+|+++.++...+.++-
T Consensus 15 ~alYl~~~Lk~-~G~~v~Va~npAA~kLl~v 44 (139)
T PF09001_consen 15 SALYLSYKLKK-KGFEVVVAGNPAALKLLEV 44 (139)
T ss_dssp HHHHHHHHHHC-TTEEEEEEE-HHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCeEEEecCHHHHhHhhh
Confidence 46789999999 9999999999988877765
No 177
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=56.25 E-value=25 Score=34.87 Aligned_cols=61 Identities=10% Similarity=-0.027 Sum_probs=37.4
Q ss_pred CcchhhhhhcCcceEeccccc-cchhhhhhhhcccc--ceEEecc-c-CCccccHHHHHHHHHHHhcCC
Q 044624 264 TQSALEALSHGVPINGWPLAA-EQFYNSNLLGEEVG--VCAEVAR-G-MNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 264 ~~s~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~~G--~G~~l~~-~-~~~~~~~~~l~~ai~~ll~~~ 327 (358)
-.+.+||+++|+|+|+-...+ .... ..+... + .|+.+.. . ++-.-+.+++++++.++++.+
T Consensus 488 G~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~-~~~~gi~V~~r~~~~~~e~v~~La~~m~~~~~~~ 553 (590)
T cd03793 488 GYTPAECTVMGIPSITTNLSGFGCFM--EEHIED-PESYGIYIVDRRFKSPDESVQQLTQYMYEFCQLS 553 (590)
T ss_pred CcHHHHHHHcCCCEEEccCcchhhhh--HHHhcc-CCCceEEEecCCccchHHHHHHHHHHHHHHhCCc
Confidence 348899999999999976533 1211 223222 2 4666642 1 111345688999999988544
No 178
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=55.52 E-value=53 Score=27.41 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCC
Q 044624 13 FLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPC 67 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 67 (358)
++.||+.|.+ .|+++ +.+....+.++. .|+.+..+.- ..++|+-
T Consensus 13 l~~lAk~L~~-lGf~I--~AT~GTAk~L~e-----~GI~v~~V~k---~TgfpE~ 56 (187)
T cd01421 13 LVEFAKELVE-LGVEI--LSTGGTAKFLKE-----AGIPVTDVSD---ITGFPEI 56 (187)
T ss_pred HHHHHHHHHH-CCCEE--EEccHHHHHHHH-----cCCeEEEhhh---ccCCcHh
Confidence 6789999999 99988 355567778877 7888776542 2355543
No 179
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=55.21 E-value=33 Score=27.95 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=28.1
Q ss_pred hchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHH--HHHH---Hh-CCceEEEcc
Q 044624 88 SFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCK--EIAQ---EY-GIFHAIFIE 137 (358)
Q Consensus 88 ~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~--~~A~---~l-giP~v~~~~ 137 (358)
...+.+.+++++. +||+||+-..+.... ...+ .+ ++|.+.+.|
T Consensus 76 ~~~~~l~~~l~~~-------~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 76 LFARRLIRLLREF-------QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHhhc-------CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 3455777888877 999999999876544 2112 23 477666554
No 180
>PRK12342 hypothetical protein; Provisional
Probab=54.97 E-value=28 Score=30.73 Aligned_cols=40 Identities=5% Similarity=-0.198 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEECCCCcc------HHHHHHHhCCceEEEcch
Q 044624 92 HFKKLIIDLIDEQNGHKPLCIITDMFFGW------CKEIAQEYGIFHAIFIEG 138 (358)
Q Consensus 92 ~l~~ll~~~~~~~~~~~pd~vV~D~~~~~------~~~~A~~lgiP~v~~~~~ 138 (358)
.+.+.++.. .||+|++.....- +..+|+.||+|++.+...
T Consensus 100 ~La~~i~~~-------~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 100 ALAAAIEKI-------GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHh-------CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 344555655 6999999776542 568999999999987654
No 181
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=54.47 E-value=77 Score=23.89 Aligned_cols=85 Identities=15% Similarity=0.138 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHHHHHHhhch
Q 044624 11 IPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKLLEATLSFK 90 (358)
Q Consensus 11 ~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (358)
.=++.+++.|.+ .|+++ ++++...+.+.. .++....+--. .+... . -.
T Consensus 13 ~~~~~~a~~l~~-~G~~i--~aT~gTa~~L~~-----~gi~~~~v~~~---~~~~~-----~----------------~~ 60 (116)
T cd01423 13 PELLPTAQKLSK-LGYKL--YATEGTADFLLE-----NGIPVTPVAWP---SEEPQ-----N----------------DK 60 (116)
T ss_pred hhHHHHHHHHHH-CCCEE--EEccHHHHHHHH-----cCCCceEeeec---cCCCC-----C----------------Cc
Confidence 347889999999 99888 345566666665 56654433100 00000 0 01
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEECCC---------CccHHHHHHHhCCceEE
Q 044624 91 PHFKKLIIDLIDEQNGHKPLCIITDMF---------FGWCKEIAQEYGIFHAI 134 (358)
Q Consensus 91 ~~l~~ll~~~~~~~~~~~pd~vV~D~~---------~~~~~~~A~~lgiP~v~ 134 (358)
+.+.+++++- ++|+||.-+. .+.....|-++|||++.
T Consensus 61 ~~i~~~i~~~-------~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 61 PSLRELLAEG-------KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred hhHHHHHHcC-------CceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 3445666654 8999998442 23345688899999863
No 182
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=53.43 E-value=14 Score=30.77 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=19.5
Q ss_pred ccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCc
Q 044624 3 PFMAQGHVIPFLALAHHLESTKNYTIAFVNTHL 35 (358)
Q Consensus 3 ~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~ 35 (358)
+.++.|.+- ..||+++.. +||+||+++.+.
T Consensus 24 tN~SSG~~G--~~lA~~~~~-~Ga~V~li~g~~ 53 (185)
T PF04127_consen 24 TNRSSGKMG--AALAEEAAR-RGAEVTLIHGPS 53 (185)
T ss_dssp EES--SHHH--HHHHHHHHH-TT-EEEEEE-TT
T ss_pred cCCCcCHHH--HHHHHHHHH-CCCEEEEEecCc
Confidence 344444332 568999999 999999999974
No 183
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=52.92 E-value=23 Score=21.81 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044624 312 LKEHIVVKIELVMNETEKGKPMRMKDLEV 340 (358)
Q Consensus 312 ~~~~l~~ai~~ll~~~~~~~~~r~~a~~l 340 (358)
+++.|.+||..+.++. .++++.|+..
T Consensus 1 tee~l~~Ai~~v~~g~---~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK---MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS---S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC---CCHHHHHHHH
Confidence 5789999999998762 2888888764
No 184
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=52.61 E-value=29 Score=31.92 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=29.7
Q ss_pred hhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccH----------HHHHHHhCCceEEE
Q 044624 87 LSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWC----------KEIAQEYGIFHAIF 135 (358)
Q Consensus 87 ~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~----------~~~A~~lgiP~v~~ 135 (358)
+.....+.++++.. +||+||+.+.+.++ ..+.++++||.++-
T Consensus 66 eea~~~i~~mv~~~-------~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 66 EEALKKILEMVKKL-------KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHHHhc-------CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 34455566666666 89999999976532 13567899999874
No 185
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=52.42 E-value=29 Score=32.43 Aligned_cols=55 Identities=20% Similarity=0.120 Sum_probs=43.5
Q ss_pred hhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHH
Q 044624 267 ALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMK 336 (358)
Q Consensus 267 ~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~ 336 (358)
.-||-..|+|.+++=...+++. ++ +. |.-+.+. .+++.+.+++.++++++ +..+|
T Consensus 293 qEEAp~lg~Pvl~lR~~TERPE---~v-~a-gt~~lvg------~~~~~i~~~~~~ll~~~----~~~~~ 347 (383)
T COG0381 293 QEEAPSLGKPVLVLRDTTERPE---GV-EA-GTNILVG------TDEENILDAATELLEDE----EFYER 347 (383)
T ss_pred hhhHHhcCCcEEeeccCCCCcc---ce-ec-CceEEeC------ccHHHHHHHHHHHhhCh----HHHHH
Confidence 4689999999999988888887 33 45 6655554 46799999999999998 55553
No 186
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=52.40 E-value=22 Score=26.97 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=29.4
Q ss_pred cccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcch
Q 044624 2 LPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNI 37 (358)
Q Consensus 2 ~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~ 37 (358)
.+.++..|.....-++..|.+ +||+|.++......
T Consensus 5 ~~~~~e~H~lG~~~~~~~l~~-~G~~V~~lg~~~~~ 39 (119)
T cd02067 5 ATVGGDGHDIGKNIVARALRD-AGFEVIDLGVDVPP 39 (119)
T ss_pred EeeCCchhhHHHHHHHHHHHH-CCCEEEECCCCCCH
Confidence 456789999999999999999 99999888754333
No 187
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=52.25 E-value=25 Score=36.66 Aligned_cols=55 Identities=16% Similarity=0.056 Sum_probs=37.7
Q ss_pred cCCc-chhhhhhcCcc---eEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQ-SALEALSHGVP---INGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~-s~~eal~~GvP---~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
-|+| +.+|++++|+| ++++.-++ ..+..+. .-|+.+++ .+.++++++|.++|+.+
T Consensus 386 EGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~~l~---~~allVnP-----~D~~~lA~AI~~aL~m~ 444 (797)
T PLN03063 386 DGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQSLG---AGALLVNP-----WNITEVSSAIKEALNMS 444 (797)
T ss_pred cccCcchhhHheeecCCCCCEEeeCCc---Cchhhhc---CCeEEECC-----CCHHHHHHHHHHHHhCC
Confidence 6777 66799999999 44444322 2222221 24788875 68899999999999843
No 188
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=51.17 E-value=53 Score=30.33 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCC--CcEEEEEeCCc
Q 044624 11 IPFLALAHHLESTK--NYTIAFVNTHL 35 (358)
Q Consensus 11 ~P~l~La~~L~~~r--Gh~Vt~~t~~~ 35 (358)
.-++.|+++|.+ + ||+|++++...
T Consensus 18 ~~~~~l~~~L~~-~~~g~~v~v~~~~~ 43 (359)
T PRK09922 18 TVISNVINTFEE-SKINCEMFFFCRND 43 (359)
T ss_pred HHHHHHHHHhhh-cCcceeEEEEecCC
Confidence 556889999999 9 99999998754
No 189
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=50.87 E-value=17 Score=28.81 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEE
Q 044624 15 ALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFL 53 (358)
Q Consensus 15 ~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~ 53 (358)
-+|..|++ .||+|++++.....+.+.. .++.+.
T Consensus 12 ~~a~~L~~-~g~~V~l~~r~~~~~~~~~-----~g~~~~ 44 (151)
T PF02558_consen 12 LYAARLAQ-AGHDVTLVSRSPRLEAIKE-----QGLTIT 44 (151)
T ss_dssp HHHHHHHH-TTCEEEEEESHHHHHHHHH-----HCEEEE
T ss_pred HHHHHHHH-CCCceEEEEccccHHhhhh-----eeEEEE
Confidence 47899999 9999999999874444554 455554
No 190
>PRK08006 replicative DNA helicase; Provisional
Probab=50.83 E-value=1.7e+02 Score=28.47 Aligned_cols=36 Identities=8% Similarity=0.086 Sum_probs=29.5
Q ss_pred cCCCcChHHHHHHHHHHH-hCCCcEEEEEeCCcchhhh
Q 044624 4 FMAQGHVIPFLALAHHLE-STKNYTIAFVNTHLNIKKI 40 (358)
Q Consensus 4 ~p~~GH~~P~l~La~~L~-~~rGh~Vt~~t~~~~~~~~ 40 (358)
-|+.|--.-.+.+|..++ + .|+.|.|++.+...+.+
T Consensus 232 rPgmGKTafalnia~~~a~~-~g~~V~~fSlEM~~~ql 268 (471)
T PRK08006 232 RPSMGKTTFAMNLCENAAML-QDKPVLIFSLEMPGEQI 268 (471)
T ss_pred CCCCCHHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHH
Confidence 478888899999999887 5 69999999988766543
No 191
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=50.64 E-value=45 Score=30.24 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCCCCcccccCCcchhhhh----hcCcceEeccccccchh
Q 044624 222 AVSQMVQLAMALEASGKNFIWIVRPPIGFDINSEFRANDADGTQSALEAL----SHGVPINGWPLAAEQFY 288 (358)
Q Consensus 222 ~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~wlgG~~s~~eal----~~GvP~l~~P~~~DQ~~ 288 (358)
.++.++.+++.|++.+...+.++ ||-+|...|. ..|+|++++|-.-|-..
T Consensus 76 ~~~~~~~~~~~l~~~~Id~Li~I-----------------GGdgs~~~a~~L~e~~~i~vigiPkTIDNDl 129 (301)
T TIGR02482 76 TEEGRQKAVENLKKLGIEGLVVI-----------------GGDGSYTGAQKLYEEGGIPVIGLPGTIDNDI 129 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-----------------CCchHHHHHHHHHHhhCCCEEeecccccCCC
Confidence 45678889999999999888777 4445544332 26999999998766544
No 192
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=50.36 E-value=33 Score=28.78 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhh-cCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhhccCCCCCCCCCccccCCCCC
Q 044624 92 HFKKLIIDLIDE-QNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLWVDLPHRNTDSDEFLLLDFPE 170 (358)
Q Consensus 92 ~l~~ll~~~~~~-~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~ 170 (358)
+++.+++..... .+. +..+||+|---..+..-|++.|||.+.+.. ..+++
T Consensus 13 Nlqaiida~~~~~~~a-~i~~Visd~~~A~~lerA~~~gIpt~~~~~----------------------------k~~~~ 63 (200)
T COG0299 13 NLQAIIDAIKGGKLDA-EIVAVISDKADAYALERAAKAGIPTVVLDR----------------------------KEFPS 63 (200)
T ss_pred cHHHHHHHHhcCCCCc-EEEEEEeCCCCCHHHHHHHHcCCCEEEecc----------------------------ccCCC
Confidence 345555554311 112 578999999888899999999999877532 11211
Q ss_pred CcccCcccccCCCCCCCCCCCCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 044624 171 ASTIHPVLRFTGSKAGAGKEHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIGF 250 (358)
Q Consensus 171 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~ 250 (358)
...-+..+.+.|+...+. +.|.=|=|--+++..+.. ++. +.| -+.
T Consensus 64 --------------------r~~~d~~l~~~l~~~~~d--lvvLAGyMrIL~~~fl~~----~~g---rIl-NIH----- 108 (200)
T COG0299 64 --------------------REAFDRALVEALDEYGPD--LVVLAGYMRILGPEFLSR----FEG---RIL-NIH----- 108 (200)
T ss_pred --------------------HHHHHHHHHHHHHhcCCC--EEEEcchHHHcCHHHHHH----hhc---ceE-ecC-----
Confidence 011244566667765554 444445565566555433 331 221 111
Q ss_pred CCCCCCCcccccCCcchhhhhhcCcceEeccc-cccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHH
Q 044624 251 DINSEFRANDADGTQSALEALSHGVPINGWPL-AAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELV 323 (358)
Q Consensus 251 ~~~~~~~~~wlgG~~s~~eal~~GvP~l~~P~-~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~l 323 (358)
+...+.+ +|..+..+|+.+|+..-++-+ +.|--.-.--+.. ...+.+.. .=|.|+|.+.|.+.
T Consensus 109 ---PSLLP~f-~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~--Q~~Vpv~~----~Dt~etl~~RV~~~ 172 (200)
T COG0299 109 ---PSLLPAF-PGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIA--QAAVPVLP----GDTAETLEARVLEQ 172 (200)
T ss_pred ---cccccCC-CCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEE--EEeeeecC----CCCHHHHHHHHHHH
Confidence 1223333 899999999999998766553 2232222222221 11233332 23889999888775
No 193
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=50.25 E-value=1.1e+02 Score=28.09 Aligned_cols=92 Identities=22% Similarity=0.255 Sum_probs=54.9
Q ss_pred CCcChHHHHHHHHHHHhCCCcEEEEEeCCcc---hhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHH
Q 044624 6 AQGHVIPFLALAHHLESTKNYTIAFVNTHLN---IKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKL 82 (358)
Q Consensus 6 ~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
..|--.-++.|++.|.+ +||++++++.... .+.+.. .++.++.++.. . . .. +.
T Consensus 13 ~GG~e~~~~~l~~~l~~-~~~~~~v~~~~~~~~~~~~~~~-----~~i~~~~~~~~------~-~----~~-----~~-- 68 (374)
T TIGR03088 13 VGGLENGLVNLINHLPA-DRYRHAVVALTEVSAFRKRIQR-----PDVAFYALHKQ------P-G----KD-----VA-- 68 (374)
T ss_pred CCcHHHHHHHHHhhccc-cccceEEEEcCCCChhHHHHHh-----cCceEEEeCCC------C-C----CC-----hH--
Confidence 34555778999999999 9999988874322 223333 57777755421 0 0 00 01
Q ss_pred HHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCcc-HHHHHHHhCCceEE
Q 044624 83 LEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGW-CKEIAQEYGIFHAI 134 (358)
Q Consensus 83 ~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~-~~~~A~~lgiP~v~ 134 (358)
....+..+++.. +||+|-+...... +..++...++|...
T Consensus 69 ------~~~~l~~~l~~~-------~~Divh~~~~~~~~~~~~~~~~~~~~~i 108 (374)
T TIGR03088 69 ------VYPQLYRLLRQL-------RPDIVHTRNLAALEAQLPAALAGVPARI 108 (374)
T ss_pred ------HHHHHHHHHHHh-------CCCEEEEcchhHHHHHHHHHhcCCCeEE
Confidence 112345666666 8999987653322 33456677998644
No 194
>PRK06321 replicative DNA helicase; Provisional
Probab=50.25 E-value=2.1e+02 Score=27.87 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=29.4
Q ss_pred cCCCcChHHHHHHHHHHH-hCCCcEEEEEeCCcchhhh
Q 044624 4 FMAQGHVIPFLALAHHLE-STKNYTIAFVNTHLNIKKI 40 (358)
Q Consensus 4 ~p~~GH~~P~l~La~~L~-~~rGh~Vt~~t~~~~~~~~ 40 (358)
-|+.|--.-.+.+|..++ . .|+.|.|++.+.....+
T Consensus 234 rPgmGKTafal~ia~~~a~~-~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 234 RPAMGKTALALNIAENFCFQ-NRLPVGIFSLEMTVDQL 270 (472)
T ss_pred CCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHH
Confidence 478888888999999987 5 69999999988766544
No 195
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=50.00 E-value=1.7e+02 Score=27.93 Aligned_cols=37 Identities=11% Similarity=0.235 Sum_probs=30.2
Q ss_pred ccCCCcChHHHHHHHHHHH-hCCCcEEEEEeCCcchhhh
Q 044624 3 PFMAQGHVIPFLALAHHLE-STKNYTIAFVNTHLNIKKI 40 (358)
Q Consensus 3 ~~p~~GH~~P~l~La~~L~-~~rGh~Vt~~t~~~~~~~~ 40 (358)
.-|+.|--.-.+.+|..++ + .|+.|.|++.+.....+
T Consensus 201 g~pg~GKT~~al~ia~~~a~~-~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 201 ARPSMGKTTLALNIAENVALR-EGKPVLFFSLEMSAEQL 238 (421)
T ss_pred eCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCCHHHH
Confidence 3578888889999998887 7 79999999988766544
No 196
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=49.77 E-value=39 Score=27.43 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=27.0
Q ss_pred eEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEe
Q 044624 210 VLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIV 244 (358)
Q Consensus 210 vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~ 244 (358)
.+|+++||.......+++....+|.+.+.--++..
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 69999999988777788888888988765334443
No 197
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=49.63 E-value=36 Score=30.82 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=23.9
Q ss_pred CCcChHHHHHHHHHHHhCCCcEEEEEeCCc
Q 044624 6 AQGHVIPFLALAHHLESTKNYTIAFVNTHL 35 (358)
Q Consensus 6 ~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~ 35 (358)
..|--.-...|+++|.+ +||+|++++...
T Consensus 12 ~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~ 40 (366)
T cd03822 12 KCGIATFTTDLVNALSA-RGPDVLVVSVAA 40 (366)
T ss_pred CCcHHHHHHHHHHHhhh-cCCeEEEEEeec
Confidence 34556678889999999 999999998754
No 198
>PRK08506 replicative DNA helicase; Provisional
Probab=48.50 E-value=1.9e+02 Score=28.23 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=31.1
Q ss_pred ccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhh
Q 044624 3 PFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKI 40 (358)
Q Consensus 3 ~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~ 40 (358)
.-|+.|--.-.+.+|...+. +|+.|.|++.+.....+
T Consensus 199 arpg~GKT~fal~ia~~~~~-~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 199 ARPSMGKTTLCLNMALKALN-QDKGVAFFSLEMPAEQL 235 (472)
T ss_pred cCCCCChHHHHHHHHHHHHh-cCCcEEEEeCcCCHHHH
Confidence 35788888999999999988 99999999998766544
No 199
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=47.86 E-value=1.7e+02 Score=25.77 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEECCCCccHH-------HHHHHhCCceEEEc
Q 044624 91 PHFKKLIIDLIDEQNGHKPLCIITDMFFGWCK-------EIAQEYGIFHAIFI 136 (358)
Q Consensus 91 ~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~-------~~A~~lgiP~v~~~ 136 (358)
+.+.+++++. ++++|| |.-.+++. .+++++|||++-|-
T Consensus 56 ~~l~~~l~~~-------~i~~vI-DATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 56 EGLAEFLREN-------GIDAVI-DATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred HHHHHHHHhC-------CCcEEE-ECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 3455666665 677764 66555543 57889999998873
No 200
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=47.67 E-value=18 Score=30.18 Aligned_cols=20 Identities=0% Similarity=0.019 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCcEEEEEeCCc
Q 044624 15 ALAHHLESTKNYTIAFVNTHL 35 (358)
Q Consensus 15 ~La~~L~~~rGh~Vt~~t~~~ 35 (358)
.+.++..+ |||+||-++-..
T Consensus 15 ~i~~EA~~-RGHeVTAivRn~ 34 (211)
T COG2910 15 RILKEALK-RGHEVTAIVRNA 34 (211)
T ss_pred HHHHHHHh-CCCeeEEEEeCh
Confidence 57889999 999999998744
No 201
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=47.62 E-value=1.8e+02 Score=26.18 Aligned_cols=24 Identities=13% Similarity=0.033 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCc
Q 044624 11 IPFLALAHHLESTKNYTIAFVNTHL 35 (358)
Q Consensus 11 ~P~l~La~~L~~~rGh~Vt~~t~~~ 35 (358)
.-+..+++.|.+ +||+|++++...
T Consensus 15 ~~~~~~~~~L~~-~g~~v~v~~~~~ 38 (355)
T cd03799 15 TFILREILALEA-AGHEVEIFSLRP 38 (355)
T ss_pred HHHHHHHHHHHh-CCCeEEEEEecC
Confidence 457889999999 999999999754
No 202
>PRK08760 replicative DNA helicase; Provisional
Probab=47.45 E-value=1.5e+02 Score=28.96 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=29.8
Q ss_pred ccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhh
Q 044624 3 PFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKI 40 (358)
Q Consensus 3 ~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~ 40 (358)
.-|+.|--.-.+.+|...+.+.|+.|.|++.+.....+
T Consensus 236 arPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 236 ARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred eCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 35788889999999998874059999999988766543
No 203
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=46.36 E-value=1.1e+02 Score=24.52 Aligned_cols=78 Identities=14% Similarity=0.214 Sum_probs=40.3
Q ss_pred cCCcchhhhhhcCcceEeccccccchhhhh----hhh-ccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAAEQFYNSN----LLG-EEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMK 336 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~----~v~-~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~ 336 (358)
++.-++..++. -.|++.+|....+..... .+. =. |+++..-.- ++-.++..++..|-.+ .|+ +++++
T Consensus 67 a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~-g~pvatv~i-~~~~nAA~~A~~ILa~-~d~----~l~~k 138 (150)
T PF00731_consen 67 AALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPS-GVPVATVGI-NNGFNAALLAARILAL-KDP----ELREK 138 (150)
T ss_dssp --HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--T-TS--EE-SS-THHHHHHHHHHHHHHT-T-H----HHHHH
T ss_pred ccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccC-CCCceEEEc-cCchHHHHHHHHHHhc-CCH----HHHHH
Confidence 33445555555 789999998877553222 111 12 555443210 1234555665555444 667 89999
Q ss_pred HHHHHHHHHHh
Q 044624 337 DLEVKEIIDNA 347 (358)
Q Consensus 337 a~~l~~~~~~a 347 (358)
.+..+++.++.
T Consensus 139 l~~~~~~~~~~ 149 (150)
T PF00731_consen 139 LRAYREKMKEK 149 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 99888887653
No 204
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=46.17 E-value=17 Score=31.76 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCc
Q 044624 12 PFLALAHHLESTKNYTIAFVNTHL 35 (358)
Q Consensus 12 P~l~La~~L~~~rGh~Vt~~t~~~ 35 (358)
-.-.|+++|++ +||+|+++++..
T Consensus 21 v~~~L~kaL~~-~G~~V~Vi~P~y 43 (245)
T PF08323_consen 21 VVGSLPKALAK-QGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHH-TT-EEEEEEE-T
T ss_pred HHHHHHHHHHh-cCCeEEEEEccc
Confidence 35579999999 999999999864
No 205
>PLN02939 transferase, transferring glycosyl groups
Probab=45.60 E-value=39 Score=35.68 Aligned_cols=58 Identities=10% Similarity=0.056 Sum_probs=36.5
Q ss_pred cCCcchhhhhhcCcceEeccccc--cchhh--hhhhhccccceEEecccCCccccHHHHHHHHHHHhc
Q 044624 262 DGTQSALEALSHGVPINGWPLAA--EQFYN--SNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMN 325 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~--DQ~~n--a~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~ 325 (358)
|| .+.+||++||+|.|+....+ |...+ ...+...-+.|..+.. .+++++..+|.+++.
T Consensus 869 fG-LvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~-----~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 869 CG-LTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLT-----PDEQGLNSALERAFN 930 (977)
T ss_pred Cc-HHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecC-----CCHHHHHHHHHHHHH
Confidence 44 47999999999998876544 32221 1111111156777754 578888888888764
No 206
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=45.15 E-value=14 Score=30.71 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=22.6
Q ss_pred CCcEEEECCCCccHH---HHHHHhCCceEEEcch
Q 044624 108 KPLCIITDMFFGWCK---EIAQEYGIFHAIFIEG 138 (358)
Q Consensus 108 ~pd~vV~D~~~~~~~---~~A~~lgiP~v~~~~~ 138 (358)
+||+|++........ ..+...++|++.....
T Consensus 51 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 84 (229)
T cd01635 51 KPDVVHAHGYYPAPLALLLAARLLGIPLVLTVHG 84 (229)
T ss_pred CCCEEEEcCCCcHHHHHHHHHhhCCCCEEEEEcC
Confidence 899999888776554 3567789998775443
No 207
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=44.79 E-value=24 Score=31.42 Aligned_cols=33 Identities=3% Similarity=0.139 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEE
Q 044624 15 ALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFL 53 (358)
Q Consensus 15 ~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~ 53 (358)
-+|..|++ .||+||++......+.+.. .|+.+.
T Consensus 5 ~~a~~L~~-~G~~V~l~~r~~~~~~i~~-----~Gl~i~ 37 (293)
T TIGR00745 5 LYGAYLAR-AGHDVTLLARGEQLEALNQ-----EGLRIV 37 (293)
T ss_pred HHHHHHHh-CCCcEEEEecHHHHHHHHH-----CCcEEE
Confidence 47889999 9999999998644455554 566544
No 208
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=44.56 E-value=23 Score=36.49 Aligned_cols=57 Identities=19% Similarity=0.079 Sum_probs=36.0
Q ss_pred cCCc-chhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQ-SALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
-|+| +++||+++|+|-.+.|+..+--.-+..+. -|+.+++ -+.++++++|.++|+++
T Consensus 372 EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~----~~llv~P-----~d~~~la~ai~~~l~~~ 429 (726)
T PRK14501 372 DGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA----EALLVNP-----NDIEGIAAAIKRALEMP 429 (726)
T ss_pred cccCcccceEEEEcCCCCceEEEecccchhHHhC----cCeEECC-----CCHHHHHHHHHHHHcCC
Confidence 5655 77999999775333333222222222222 2677765 57899999999999865
No 209
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=43.79 E-value=82 Score=24.90 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=29.3
Q ss_pred CceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEec
Q 044624 208 RSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVR 245 (358)
Q Consensus 208 ~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~ 245 (358)
..+|.+++||-.....+.++++++.+. .+.+++|+.-
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 459999999998878889999988874 3577777543
No 210
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=43.52 E-value=2e+02 Score=25.29 Aligned_cols=36 Identities=25% Similarity=0.151 Sum_probs=27.7
Q ss_pred HHHHHHHhhhcCCCCCcEEEECCCCcc-----HHHHHHHhCCceEEEc
Q 044624 94 KKLIIDLIDEQNGHKPLCIITDMFFGW-----CKEIAQEYGIFHAIFI 136 (358)
Q Consensus 94 ~~ll~~~~~~~~~~~pd~vV~D~~~~~-----~~~~A~~lgiP~v~~~ 136 (358)
+++++++ +.|+||+=..--. =..+|+++|||+|.+-
T Consensus 189 ~all~q~-------~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 189 KALLEQY-------RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred HHHHHHh-------CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 5788888 8999998654332 2469999999999874
No 211
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=42.97 E-value=92 Score=32.27 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=44.5
Q ss_pred hhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCCCCcccccCCcchhhh--hh
Q 044624 195 AELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIGFDINSEFRANDADGTQSALEA--LS 272 (358)
Q Consensus 195 ~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~wlgG~~s~~ea--l~ 272 (358)
+..+..|...... -+||.-..+.+.+..+++.|++.+...+.+++ |.+|..-| |+
T Consensus 442 ~~~v~~~~~~GGt------~LGT~R~~~~~~~~~i~~~l~~~~Id~LivIG-----------------Gdgs~~~a~~L~ 498 (762)
T cd00764 442 WIDVGGWTGRGGS------ELGTKRTLPKKDLETIAYNFQKYGIDGLIIVG-----------------GFEAYKGLLQLR 498 (762)
T ss_pred HHHHHHHHhCCcc------cccccCCCcHHHHHHHHHHHHHcCCCEEEEEC-----------------ChhHHHHHHHHH
Confidence 4445556543321 25665444556778888888888888887774 44444322 22
Q ss_pred --------cCcceEeccccccchh
Q 044624 273 --------HGVPINGWPLAAEQFY 288 (358)
Q Consensus 273 --------~GvP~l~~P~~~DQ~~ 288 (358)
.|+|++++|-.-|-..
T Consensus 499 ~~~~~y~~~~i~vVgIPkTIDNDv 522 (762)
T cd00764 499 EAREQYEEFCIPMVLIPATVSNNV 522 (762)
T ss_pred HHHhhCCCCCccEEEecccccCCC
Confidence 6899999997665443
No 212
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=42.44 E-value=77 Score=29.00 Aligned_cols=49 Identities=20% Similarity=0.309 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCCCCcccccCCcchhhhhh---cCcceEeccccccch
Q 044624 222 AVSQMVQLAMALEASGKNFIWIVRPPIGFDINSEFRANDADGTQSALEALS---HGVPINGWPLAAEQF 287 (358)
Q Consensus 222 ~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~wlgG~~s~~eal~---~GvP~l~~P~~~DQ~ 287 (358)
+++.++.+++.|++.+...+.+++ |-+|..-|.. +|+|++++|-.-|-.
T Consensus 77 ~~~~~~~~~~~l~~~~Id~Li~IG-----------------Gdgs~~~a~~L~e~~i~vigiPkTIDND 128 (317)
T cd00763 77 DEEGQAKAIEQLKKHGIDALVVIG-----------------GDGSYMGAMRLTEHGFPCVGLPGTIDND 128 (317)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC-----------------CchHHHHHHHHHHcCCCEEEecccccCC
Confidence 567788899999999998888874 4444433322 589999999766553
No 213
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=41.79 E-value=1e+02 Score=27.97 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=26.3
Q ss_pred cCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcch
Q 044624 4 FMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNI 37 (358)
Q Consensus 4 ~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~ 37 (358)
.|+.|-=.-.-.|.++|.+ +||.|.++.-++..
T Consensus 59 ~PGaGKSTli~~L~~~l~~-~G~rVaVlAVDPSS 91 (323)
T COG1703 59 VPGAGKSTLIEALGRELRE-RGHRVAVLAVDPSS 91 (323)
T ss_pred CCCCchHHHHHHHHHHHHH-CCcEEEEEEECCCC
Confidence 4666666777789999999 99999999865544
No 214
>PRK08840 replicative DNA helicase; Provisional
Probab=41.78 E-value=2.8e+02 Score=26.98 Aligned_cols=37 Identities=5% Similarity=0.113 Sum_probs=29.5
Q ss_pred cCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhh
Q 044624 4 FMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKI 40 (358)
Q Consensus 4 ~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~ 40 (358)
-|+.|--.-.+.+|...+...|+.|.|++.+.....+
T Consensus 225 rPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql 261 (464)
T PRK08840 225 RPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQL 261 (464)
T ss_pred CCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHH
Confidence 4788888889999999874169999999998766544
No 215
>PRK09165 replicative DNA helicase; Provisional
Probab=41.61 E-value=1.8e+02 Score=28.48 Aligned_cols=38 Identities=8% Similarity=0.116 Sum_probs=29.3
Q ss_pred ccCCCcChHHHHHHHHHHHhCC---------------CcEEEEEeCCcchhhhh
Q 044624 3 PFMAQGHVIPFLALAHHLESTK---------------NYTIAFVNTHLNIKKIK 41 (358)
Q Consensus 3 ~~p~~GH~~P~l~La~~L~~~r---------------Gh~Vt~~t~~~~~~~~~ 41 (358)
.-|+.|--.-++.+|...+. + |..|.|++.+.....+.
T Consensus 224 arpg~GKT~~al~ia~~~a~-~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~ 276 (497)
T PRK09165 224 GRPSMGKTALATNIAFNAAK-AYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLA 276 (497)
T ss_pred eCCCCChHHHHHHHHHHHHH-hhcccccccccccccCCCeEEEEeCcCCHHHHH
Confidence 34778888888888888875 4 78999999987765543
No 216
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=41.37 E-value=94 Score=30.41 Aligned_cols=45 Identities=18% Similarity=0.132 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCC
Q 044624 13 FLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCT 68 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 68 (358)
++.||+.|.+ .|+++ +.|....+.++. .|+.+..+.- ..++|+-.
T Consensus 17 iv~lAk~L~~-lGfeI--~AT~GTak~L~e-----~GI~v~~V~k---~TgfpEil 61 (513)
T PRK00881 17 IVEFAKALVE-LGVEI--LSTGGTAKLLAE-----AGIPVTEVSD---VTGFPEIL 61 (513)
T ss_pred HHHHHHHHHH-CCCEE--EEcchHHHHHHH-----CCCeeEEeec---ccCCchhc
Confidence 6789999999 99988 355677778877 7887776542 23555543
No 217
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=41.17 E-value=51 Score=31.25 Aligned_cols=42 Identities=21% Similarity=0.161 Sum_probs=29.3
Q ss_pred hhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccH----------HHHHHHhCCceEEE
Q 044624 87 LSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWC----------KEIAQEYGIFHAIF 135 (358)
Q Consensus 87 ~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~----------~~~A~~lgiP~v~~ 135 (358)
+.....+.++++.. +||++|+.+.+.++ ..+.+++|||.+.-
T Consensus 62 eea~~~i~~mv~k~-------~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 62 EEAKAKVLEMIKGA-------NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred HHHHHHHHHHHHhc-------CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 33445556666666 89999999976532 13566899998874
No 218
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=41.03 E-value=52 Score=31.20 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=29.2
Q ss_pred hchHHHHHHHHHHhhhcCCCCCcEEEECCCCccH----------HHHHHHhCCceEEEc
Q 044624 88 SFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWC----------KEIAQEYGIFHAIFI 136 (358)
Q Consensus 88 ~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~----------~~~A~~lgiP~v~~~ 136 (358)
.....+.++++.. +||++|+.+.+.++ ..+.+++|||.+.--
T Consensus 63 ea~~~i~~mv~k~-------~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 63 EAVARVLEMLKDK-------EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHhc-------CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 3445556666666 89999999976532 135668999988743
No 219
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=40.86 E-value=1.9e+02 Score=23.14 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.9
Q ss_pred CCCcChHHHHHHHHHHHhCCCcEEEEE
Q 044624 5 MAQGHVIPFLALAHHLESTKNYTIAFV 31 (358)
Q Consensus 5 p~~GH~~P~l~La~~L~~~rGh~Vt~~ 31 (358)
++.|--.-.+.|++.|++ +|.+|.++
T Consensus 7 ~~~GKT~va~~L~~~l~~-~g~~V~~~ 32 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKK-AGYSVGYY 32 (166)
T ss_pred CCccHHHHHHHHHHHHHH-CCCcEEEE
Confidence 456778889999999999 99999886
No 220
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=40.81 E-value=76 Score=29.39 Aligned_cols=43 Identities=12% Similarity=-0.164 Sum_probs=27.8
Q ss_pred hchHHHHHHHHHHhhhcCCCCCcEEEECC--CCc-cHHHHHHHhCCceEEEcc
Q 044624 88 SFKPHFKKLIIDLIDEQNGHKPLCIITDM--FFG-WCKEIAQEYGIFHAIFIE 137 (358)
Q Consensus 88 ~~~~~l~~ll~~~~~~~~~~~pd~vV~D~--~~~-~~~~~A~~lgiP~v~~~~ 137 (358)
.+...+.++++.. +||+||+-. +.. ++..+|..++||++.+.-
T Consensus 54 ~~~~~~~~~~~~~-------~Pd~Vlv~GD~~~~la~alaA~~~~ipv~Hiea 99 (346)
T PF02350_consen 54 LAIIELADVLERE-------KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEA 99 (346)
T ss_dssp HHHHHHHHHHHHH-------T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-
T ss_pred HHHHHHHHHHHhc-------CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecC
Confidence 3456667788877 899877644 433 345688899999877653
No 221
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=40.76 E-value=2.3e+02 Score=25.00 Aligned_cols=39 Identities=15% Similarity=0.076 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEECCCCccH-------HHHHHHhCCceEEEc
Q 044624 90 KPHFKKLIIDLIDEQNGHKPLCIITDMFFGWC-------KEIAQEYGIFHAIFI 136 (358)
Q Consensus 90 ~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~-------~~~A~~lgiP~v~~~ 136 (358)
.+.+.+++++. +.|+|| |.-.+++ ..+|++.|||++.|-
T Consensus 55 ~e~l~~~l~e~-------~i~llI-DATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 55 AEGLAAFLREE-------GIDLLI-DATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred HHHHHHHHHHc-------CCCEEE-ECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 35667788876 677664 5555544 358899999999873
No 222
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=40.52 E-value=29 Score=30.57 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=31.8
Q ss_pred cCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 044624 4 FMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKS 42 (358)
Q Consensus 4 ~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~ 42 (358)
-|+.|-..-..+++.+|.+ +|+.|+|++.+.....+..
T Consensus 113 ~~G~GKThLa~Ai~~~l~~-~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 113 PPGVGKTHLAIAIGNELLK-AGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCCCcHHHHHHHHHHHHHH-cCCeEEEEEHHHHHHHHHH
Confidence 3566777778999999999 9999999999888777655
No 223
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=40.25 E-value=90 Score=25.46 Aligned_cols=45 Identities=16% Similarity=0.035 Sum_probs=31.4
Q ss_pred hhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccH---------------HHHHHHhCCceEEEcch
Q 044624 87 LSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWC---------------KEIAQEYGIFHAIFIEG 138 (358)
Q Consensus 87 ~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~---------------~~~A~~lgiP~v~~~~~ 138 (358)
......+.+++++. +||.|+.+..++.- ..++.+.|||+.-+.|+
T Consensus 47 ~~I~~~l~~~i~~~-------~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~ 106 (164)
T PRK00039 47 KQIYDGLSELIDEY-------QPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHHHHHHh-------CCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 34557788888887 89999888765431 12566778888777654
No 224
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=40.17 E-value=2.6e+02 Score=24.58 Aligned_cols=103 Identities=16% Similarity=0.063 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCCC-cEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCCCCCCCCchHHHHHHHHH-hhch
Q 044624 13 FLALAHHLESTKN-YTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTENTDSHPFDVVRKLLEAT-LSFK 90 (358)
Q Consensus 13 ~l~La~~L~~~rG-h~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 90 (358)
+-..++.|.+ .+ .+|-+.|.....+.+.........+-+..+|.+....+++.. .+.... +...
T Consensus 118 ~~eA~~~l~~-~~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~-------------~iia~~GPfs~ 183 (249)
T PF02571_consen 118 YEEAAELLKE-LGGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESALGFPPK-------------NIIAMQGPFSK 183 (249)
T ss_pred HHHHHHHHhh-cCCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccCCCChh-------------hEEEEeCCCCH
Confidence 4567777777 77 666555555555555331111134444455543111111111 000000 1112
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEECCCCccH----HHHHHHhCCceEEEc
Q 044624 91 PHFKKLIIDLIDEQNGHKPLCIITDMFFGWC----KEIAQEYGIFHAIFI 136 (358)
Q Consensus 91 ~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~----~~~A~~lgiP~v~~~ 136 (358)
+.=+++++++ +.|+||+=..--.+ ..+|+++|||++.+-
T Consensus 184 e~n~al~~~~-------~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 184 ELNRALFRQY-------GIDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred HHHHHHHHHc-------CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 2225778887 89999985543222 369999999999873
No 225
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=39.89 E-value=47 Score=27.74 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEecc
Q 044624 13 FLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETP 56 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p 56 (358)
.-.|+..|++ +||+||+++.....+.-+.. - .|++...+|
T Consensus 23 ve~L~~~l~~-~g~~v~Vyc~~~~~~~~~~~-y--~gv~l~~i~ 62 (185)
T PF09314_consen 23 VEELAPRLVS-KGIDVTVYCRSDYYPYKEFE-Y--NGVRLVYIP 62 (185)
T ss_pred HHHHHHHHhc-CCceEEEEEccCCCCCCCcc-c--CCeEEEEeC
Confidence 3458888899 99999999876554221110 1 577777666
No 226
>PLN02891 IMP cyclohydrolase
Probab=39.89 E-value=82 Score=30.87 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCCC
Q 044624 12 PFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCTE 69 (358)
Q Consensus 12 P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 69 (358)
-++.||+.|.+ .|.+ +++|....+.++. .|+.+..+. +..++|+-..
T Consensus 34 gi~~fAk~L~~-~gve--IiSTgGTak~L~e-----~Gi~v~~Vs---d~TgfPEiL~ 80 (547)
T PLN02891 34 DLALLANGLQE-LGYT--IVSTGGTASALEA-----AGVSVTKVE---ELTNFPEMLD 80 (547)
T ss_pred CHHHHHHHHHH-CCCE--EEEcchHHHHHHH-----cCCceeeHH---hccCCchhhC
Confidence 36789999999 7654 5778777778877 788888765 2346665433
No 227
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=39.34 E-value=2.1e+02 Score=23.23 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=24.0
Q ss_pred cccCCCcChHHHHHHHHHHHhCCCcEEEE
Q 044624 2 LPFMAQGHVIPFLALAHHLESTKNYTIAF 30 (358)
Q Consensus 2 ~~~p~~GH~~P~l~La~~L~~~rGh~Vt~ 30 (358)
++-++.|-....+.+|.+.+. +|+.|.|
T Consensus 8 y~g~G~Gkt~~a~g~~~ra~~-~g~~v~~ 35 (159)
T cd00561 8 YTGNGKGKTTAALGLALRALG-HGYRVGV 35 (159)
T ss_pred ECCCCCCHHHHHHHHHHHHHH-CCCeEEE
Confidence 456788888888899999999 9999999
No 228
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=39.13 E-value=30 Score=26.39 Aligned_cols=31 Identities=6% Similarity=0.049 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCcchhhhh
Q 044624 10 VIPFLALAHHLESTKNYTIAFVNTHLNIKKIK 41 (358)
Q Consensus 10 ~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~ 41 (358)
+.|++.+.-...- +||++|++.+..+...+.
T Consensus 9 Vk~L~eIll~Fil-rGHKT~vyLP~yY~~~~~ 39 (122)
T PF14626_consen 9 VKALVEILLHFIL-RGHKTVVYLPKYYKNYVD 39 (122)
T ss_pred HHHHHHHHHHHHh-ccCeeEEEChHHHhcccc
Confidence 5678888888888 999999999987765443
No 229
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=39.11 E-value=2.3e+02 Score=27.35 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEc
Q 044624 91 PHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFI 136 (358)
Q Consensus 91 ~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~ 136 (358)
..+.+++++. +||++|... ....+|.++|||.+.+.
T Consensus 385 ~e~~~~i~~~-------~pDl~ig~~---~~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 385 RELLKLLLEY-------KADLLIAGG---KERYTALKLGIPFCDIN 420 (456)
T ss_pred HHHHHHHhhc-------CCCEEEEcc---chHHHHHhcCCCEEEcc
Confidence 3455666666 899999763 34678889999988753
No 230
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=38.12 E-value=47 Score=22.96 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCc
Q 044624 13 FLALAHHLESTKNYTIAFVNTHL 35 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~ 35 (358)
-+.+|..|++ .|.+||++...+
T Consensus 11 g~E~A~~l~~-~g~~vtli~~~~ 32 (80)
T PF00070_consen 11 GIELAEALAE-LGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHH-TTSEEEEEESSS
T ss_pred HHHHHHHHHH-hCcEEEEEeccc
Confidence 4789999999 999999998754
No 231
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=38.04 E-value=79 Score=27.87 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=27.7
Q ss_pred cCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcch
Q 044624 4 FMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNI 37 (358)
Q Consensus 4 ~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~ 37 (358)
-|+.|--.-.++++...++ +|..|.|++.+...
T Consensus 44 ~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 44 VSDTGKSLMVEQFAVTQAS-RGNPVLFVTVESPA 76 (259)
T ss_pred CCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCCc
Confidence 4677888888999999999 99999999987533
No 232
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=37.78 E-value=95 Score=27.25 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=35.7
Q ss_pred cCCcc-hhhhhhcCcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQS-ALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s-~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
.|+|. +.||+++|+|++... .......+.+. +.|. +.. ....+++..++..+++++
T Consensus 287 e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~~~~-~~g~-~~~----~~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 287 EGFGLVLLEAMAAGTPVIASD----VGGIPEVVEDG-ETGL-LVP----PGDVEELADALEQLLEDP 343 (381)
T ss_pred ccchHHHHHHHhcCCcEEECC----CCChHHHhcCC-CceE-ecC----CCCHHHHHHHHHHHhcCH
Confidence 34443 699999999986654 33233333222 2466 432 126899999999998876
No 233
>PRK03202 6-phosphofructokinase; Provisional
Probab=37.76 E-value=81 Score=28.91 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=47.4
Q ss_pred hhHHHHHhhcCCCCceEEEEeccCCC---CCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCCCCcccccCCcchhhhh
Q 044624 195 AELCKNWLDRKPCRSVLYVSFGSQDT---IAVSQMVQLAMALEASGKNFIWIVRPPIGFDINSEFRANDADGTQSALEAL 271 (358)
Q Consensus 195 ~~~~~~wld~~~~~~vvyvs~GS~~~---~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~wlgG~~s~~eal 271 (358)
+..+..|...... -+||.-. ..++.++.+++.|++.+...+.++ ||-+|..-|.
T Consensus 54 ~~~v~~~~~~gGs------~LgtsR~~~~~~~~~~~~~~~~l~~~~Id~Li~I-----------------GGd~s~~~a~ 110 (320)
T PRK03202 54 LKSVSDIINRGGT------ILGSARFPEFKDEEGRAKAIENLKKLGIDALVVI-----------------GGDGSYMGAK 110 (320)
T ss_pred HHHHhhHHhCCCc------ccccCCCCCcCCHHHHHHHHHHHHHcCCCEEEEe-----------------CChHHHHHHH
Confidence 5556667654322 2666542 245678899999999998888777 4545544442
Q ss_pred h---cCcceEeccccccchh
Q 044624 272 S---HGVPINGWPLAAEQFY 288 (358)
Q Consensus 272 ~---~GvP~l~~P~~~DQ~~ 288 (358)
. +|+|++++|-.-|-..
T Consensus 111 ~L~e~~i~vigiPkTIDNDl 130 (320)
T PRK03202 111 RLTEHGIPVIGLPGTIDNDI 130 (320)
T ss_pred HHHhcCCcEEEecccccCCC
Confidence 2 5999999998776543
No 234
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=37.66 E-value=2.9e+02 Score=26.48 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEc
Q 044624 92 HFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFI 136 (358)
Q Consensus 92 ~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~ 136 (358)
.+.+++++. ++|+||.... ...+|+++|||.+.+.
T Consensus 364 ~l~~~i~~~-------~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 364 DLEDLACAA-------GADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred HHHHHHhhc-------CCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 445566655 8999998774 4679999999998654
No 235
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=37.64 E-value=82 Score=28.52 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=33.5
Q ss_pred ccCCCcChHHHHHHHHHHHhC-CCcEEEEEeCCcchhhhhh
Q 044624 3 PFMAQGHVIPFLALAHHLEST-KNYTIAFVNTHLNIKKIKS 42 (358)
Q Consensus 3 ~~p~~GH~~P~l~La~~L~~~-rGh~Vt~~t~~~~~~~~~~ 42 (358)
-+...|++.=+.++.++|+++ .+.+||+++.+.+...++.
T Consensus 6 r~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~ 46 (319)
T TIGR02193 6 KTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRL 46 (319)
T ss_pred ecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhc
Confidence 345779999999999999993 3999999999888777664
No 236
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=37.63 E-value=1.4e+02 Score=29.22 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccCCCCCCCC
Q 044624 13 FLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIIDHDLPPCT 68 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 68 (358)
++.|++.|.+ .|+++ ++|....+.++. .|+.+..+.- ..++|+-.
T Consensus 13 iv~lAk~L~~-lGfeI--iATgGTak~L~e-----~GI~v~~Vsk---~TgfPEil 57 (511)
T TIGR00355 13 IVEFAQGLVE-RGVEL--LSTGGTAKLLAE-----AGVPVTEVSD---YTGFPEMM 57 (511)
T ss_pred HHHHHHHHHH-CCCEE--EEechHHHHHHH-----CCCeEEEeec---ccCCchhh
Confidence 6789999999 99988 356677778887 7888776542 24555543
No 237
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=37.62 E-value=56 Score=31.25 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=21.6
Q ss_pred CCcEEEECCCCccHHHHHHHhCCceEEEcc
Q 044624 108 KPLCIITDMFFGWCKEIAQEYGIFHAIFIE 137 (358)
Q Consensus 108 ~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~ 137 (358)
+||++|.+.+ ...+|+++|+|.+.++.
T Consensus 370 ~pdliig~~~---~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 370 EPELIFGTQM---ERHIGKRLDIPCAVISA 396 (430)
T ss_pred CCCEEEecch---hhHHHHHcCCCEEEEeC
Confidence 7999999884 44578999999988753
No 238
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=37.07 E-value=99 Score=29.01 Aligned_cols=45 Identities=13% Similarity=-0.074 Sum_probs=31.4
Q ss_pred HHhhchHHHHHHHHHHhhhcCCCCCcEEEECC--CCccH-HHHHHHhCCceEEEc
Q 044624 85 ATLSFKPHFKKLIIDLIDEQNGHKPLCIITDM--FFGWC-KEIAQEYGIFHAIFI 136 (358)
Q Consensus 85 ~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~--~~~~~-~~~A~~lgiP~v~~~ 136 (358)
.+..+...+.+++++. +||+|++-. ....+ ..+|-.++||+..+-
T Consensus 76 ~t~~~i~~~~~vl~~~-------kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvE 123 (383)
T COG0381 76 ITGNIIEGLSKVLEEE-------KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVE 123 (383)
T ss_pred HHHHHHHHHHHHHHhh-------CCCEEEEeCCcchHHHHHHHHHHhCCceEEEe
Confidence 3344556777888877 899888754 44433 567888899988764
No 239
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=36.75 E-value=1.3e+02 Score=25.74 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=51.2
Q ss_pred HHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCCC--Ccc--cccCCcc------
Q 044624 197 LCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIGFDINSEF--RAN--DADGTQS------ 266 (358)
Q Consensus 197 ~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~--~~~--wlgG~~s------ 266 (358)
.+.+++... .+.+.||-+-|.......-.++..++|+.+|..+.=.-......+.-... -.+ ++||-||
T Consensus 23 ~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~ 101 (224)
T COG3340 23 FIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQE 101 (224)
T ss_pred HHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHH
Confidence 344455443 34799999988877666667889999999998765322211100000000 012 2277676
Q ss_pred ---------hhhhhhcCcceEecc
Q 044624 267 ---------ALEALSHGVPINGWP 281 (358)
Q Consensus 267 ---------~~eal~~GvP~l~~P 281 (358)
+.|.+.+|+|-++|-
T Consensus 102 lke~gld~iIr~~vk~G~~YiG~S 125 (224)
T COG3340 102 LKETGLDDIIRERVKAGTPYIGWS 125 (224)
T ss_pred HHHhCcHHHHHHHHHcCCceEEec
Confidence 368899999998875
No 240
>PRK07773 replicative DNA helicase; Validated
Probab=36.72 E-value=2.6e+02 Score=29.78 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=29.6
Q ss_pred cCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhh
Q 044624 4 FMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIK 41 (358)
Q Consensus 4 ~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~ 41 (358)
-|+.|-..-.+.+|...+...|..|.|++.+.....+.
T Consensus 225 rPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 225 RPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLV 262 (886)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 47888888899999988751488999999887665543
No 241
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=36.70 E-value=31 Score=32.65 Aligned_cols=29 Identities=34% Similarity=0.547 Sum_probs=23.1
Q ss_pred CcChHHHHH---HHHHHHhCCCcEEEEEeCCcc
Q 044624 7 QGHVIPFLA---LAHHLESTKNYTIAFVNTHLN 36 (358)
Q Consensus 7 ~GH~~P~l~---La~~L~~~rGh~Vt~~t~~~~ 36 (358)
-||+.|++. +++.++. +||+|.|+|..+.
T Consensus 16 lGH~~~~l~ADv~aR~~r~-~G~~v~~~tGtDe 47 (391)
T PF09334_consen 16 LGHLYPYLAADVLARYLRL-RGHDVLFVTGTDE 47 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEE-
T ss_pred CChhHHHHHHHHHHHHHhh-cccceeeEEecch
Confidence 399998875 8999999 9999999997543
No 242
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=36.65 E-value=1.5e+02 Score=26.62 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCcEEEEEeCC
Q 044624 13 FLALAHHLESTKNYTIAFVNTH 34 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~ 34 (358)
-+.|++.|++ +|++|..+.-+
T Consensus 13 ~~~~~~~l~~-~g~~v~~~g~~ 33 (287)
T TIGR02853 13 QLELIRKLEE-LDAKISLIGFD 33 (287)
T ss_pred HHHHHHHHHH-CCCEEEEEecc
Confidence 3679999999 99999999875
No 243
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=36.33 E-value=54 Score=26.93 Aligned_cols=40 Identities=20% Similarity=0.108 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEECCCCcc--HHHHHHHhCCceEEEcc
Q 044624 90 KPHFKKLIIDLIDEQNGHKPLCIITDMFFGW--CKEIAQEYGIFHAIFIE 137 (358)
Q Consensus 90 ~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~--~~~~A~~lgiP~v~~~~ 137 (358)
.+.++.++. . +||+||....... ...--++.|||++.+..
T Consensus 59 ~~n~E~ll~-l-------~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 59 SLNVELIVA-L-------KPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCCHHHHhc-c-------CCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 345555555 3 8999998654332 33445789999988753
No 244
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=35.80 E-value=46 Score=22.44 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCcEEEEEeCCc
Q 044624 14 LALAHHLESTKNYTIAFVNTHL 35 (358)
Q Consensus 14 l~La~~L~~~rGh~Vt~~t~~~ 35 (358)
+..|..|++ +|++|+++=..+
T Consensus 9 l~aA~~L~~-~g~~v~v~E~~~ 29 (68)
T PF13450_consen 9 LAAAYYLAK-AGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHH-TTSEEEEEESSS
T ss_pred HHHHHHHHH-CCCcEEEEecCc
Confidence 567899999 999999986543
No 245
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=35.51 E-value=3.5e+02 Score=25.84 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=29.3
Q ss_pred cCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhh
Q 044624 4 FMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKI 40 (358)
Q Consensus 4 ~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~ 40 (358)
.|+.|=-.-.+.++..++...|+.|.|++.+.....+
T Consensus 203 ~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 203 RPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 4778888889999988774159999999998766554
No 246
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=35.37 E-value=83 Score=23.58 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=26.7
Q ss_pred ccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCc
Q 044624 3 PFMAQGHVIPFLALAHHLESTKNYTIAFVNTHL 35 (358)
Q Consensus 3 ~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~ 35 (358)
..+..-|-.-+.-|+..|.+ +||+|.++-...
T Consensus 7 ~~~~~~~~lGl~~la~~l~~-~G~~v~~~d~~~ 38 (121)
T PF02310_consen 7 CVPGEVHPLGLLYLAAYLRK-AGHEVDILDANV 38 (121)
T ss_dssp EBTTSSTSHHHHHHHHHHHH-TTBEEEEEESSB
T ss_pred eeCCcchhHHHHHHHHHHHH-CCCeEEEECCCC
Confidence 45667788889999999999 999999996544
No 247
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=35.08 E-value=34 Score=33.11 Aligned_cols=24 Identities=13% Similarity=-0.018 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCc
Q 044624 11 IPFLALAHHLESTKNYTIAFVNTHL 35 (358)
Q Consensus 11 ~P~l~La~~L~~~rGh~Vt~~t~~~ 35 (358)
.-+-.|+++|++ +||+|.++++..
T Consensus 21 ~~v~~L~~aL~~-~G~~v~v~~p~y 44 (473)
T TIGR02095 21 DVVGALPKALAA-LGHDVRVLLPAY 44 (473)
T ss_pred HHHHHHHHHHHH-cCCeEEEEecCC
Confidence 345679999999 999999999754
No 248
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=34.94 E-value=61 Score=31.93 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=21.3
Q ss_pred CCcEEEECCCCccHHHHHHHhCCceEEEc
Q 044624 108 KPLCIITDMFFGWCKEIAQEYGIFHAIFI 136 (358)
Q Consensus 108 ~pd~vV~D~~~~~~~~~A~~lgiP~v~~~ 136 (358)
+||+|+.+.+ ...+|+++|||++.++
T Consensus 374 ~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 374 EPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred CCCEEEECch---hhHHHHHhCCCEEEee
Confidence 7999999883 4556899999998765
No 249
>PRK05636 replicative DNA helicase; Provisional
Probab=34.59 E-value=2.4e+02 Score=27.72 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=28.1
Q ss_pred cCCCcChHHHHHHHHHHH-hCCCcEEEEEeCCcchhhh
Q 044624 4 FMAQGHVIPFLALAHHLE-STKNYTIAFVNTHLNIKKI 40 (358)
Q Consensus 4 ~p~~GH~~P~l~La~~L~-~~rGh~Vt~~t~~~~~~~~ 40 (358)
-|+.|--.-.+.+|...+ + +|..|.|++.+.....+
T Consensus 273 rpg~GKT~~al~~a~~~a~~-~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 273 RPGVGKSTLALDFMRSASIK-HNKASVIFSLEMSKSEI 309 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHh-CCCeEEEEEeeCCHHHH
Confidence 467788888889998876 5 68999999988765543
No 250
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=34.56 E-value=1e+02 Score=26.52 Aligned_cols=28 Identities=11% Similarity=-0.114 Sum_probs=23.2
Q ss_pred CCcEEEECCCCccHH---HHHHHhCCceEEE
Q 044624 108 KPLCIITDMFFGWCK---EIAQEYGIFHAIF 135 (358)
Q Consensus 108 ~pd~vV~D~~~~~~~---~~A~~lgiP~v~~ 135 (358)
..|+||.|++.+... .+++.+|+|++.-
T Consensus 178 gadlIvLDCmGYt~~~r~~~~~~~g~PVlLs 208 (221)
T PF07302_consen 178 GADLIVLDCMGYTQEMRDIVQRALGKPVLLS 208 (221)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHhCCCEEeH
Confidence 689999999988643 4888999998763
No 251
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.49 E-value=30 Score=26.77 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCcchhhh
Q 044624 10 VIPFLALAHHLESTKNYTIAFVNTHLNIKKI 40 (358)
Q Consensus 10 ~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~ 40 (358)
+.-.+-++..|.+ +|++||++.++...+.+
T Consensus 18 issaiYls~klkk-kgf~v~VaateAa~kLl 47 (148)
T COG4081 18 ISSAIYLSHKLKK-KGFDVTVAATEAALKLL 47 (148)
T ss_pred chHHHHHHHHhhc-cCccEEEecCHhhheee
Confidence 3446778999999 99999999997655433
No 252
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=34.36 E-value=70 Score=31.54 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=21.1
Q ss_pred CCcEEEECCCCccHHHHHHHhCCceEEEc
Q 044624 108 KPLCIITDMFFGWCKEIAQEYGIFHAIFI 136 (358)
Q Consensus 108 ~pd~vV~D~~~~~~~~~A~~lgiP~v~~~ 136 (358)
+||+||.+.+ ...+|+++|||++.++
T Consensus 362 ~PdliiG~~~---er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 362 APELVLGTQM---ERHSAKRLGIPCAVIS 387 (519)
T ss_pred CCCEEEEcch---HHHHHHHcCCCEEEec
Confidence 7999997763 5568999999998765
No 253
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=34.12 E-value=67 Score=31.61 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=22.0
Q ss_pred CCcEEEECCCCccHHHHHHHhCCceEEEcc
Q 044624 108 KPLCIITDMFFGWCKEIAQEYGIFHAIFIE 137 (358)
Q Consensus 108 ~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~ 137 (358)
+||+||.+. ....+|+++|||++.++.
T Consensus 364 ~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 364 EPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred CCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 799999888 355679999999987654
No 254
>PRK09620 hypothetical protein; Provisional
Probab=33.80 E-value=51 Score=28.56 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=21.5
Q ss_pred ccCCCcChHHHHHHHHHHHhCCCcEEEEEeCC
Q 044624 3 PFMAQGHVIPFLALAHHLESTKNYTIAFVNTH 34 (358)
Q Consensus 3 ~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~ 34 (358)
+..+.|.+- ..||++|.+ +|++|+++...
T Consensus 24 tN~SSGfiG--s~LA~~L~~-~Ga~V~li~g~ 52 (229)
T PRK09620 24 TNMAKGTIG--RIIAEELIS-KGAHVIYLHGY 52 (229)
T ss_pred cCCCcCHHH--HHHHHHHHH-CCCeEEEEeCC
Confidence 344445443 578999999 99999999754
No 255
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=33.63 E-value=2.7e+02 Score=22.93 Aligned_cols=29 Identities=7% Similarity=0.071 Sum_probs=23.3
Q ss_pred cccCCCcChHHHHHHHHHHHhCCCcEEEEE
Q 044624 2 LPFMAQGHVIPFLALAHHLESTKNYTIAFV 31 (358)
Q Consensus 2 ~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~ 31 (358)
++-++.|-..-.+.+|.+.+. +|+.|.++
T Consensus 11 ~~g~GkGKtt~a~g~a~ra~~-~g~~v~iv 39 (173)
T TIGR00708 11 HTGNGKGKTTAAFGMALRALG-HGKKVGVI 39 (173)
T ss_pred ECCCCCChHHHHHHHHHHHHH-CCCeEEEE
Confidence 445677888888899999999 99999544
No 256
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=33.58 E-value=54 Score=31.85 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCcEEEEEeCCc
Q 044624 14 LALAHHLESTKNYTIAFVNTHL 35 (358)
Q Consensus 14 l~La~~L~~~rGh~Vt~~t~~~ 35 (358)
..||+++.. +|++||+++.+.
T Consensus 286 ~alA~aa~~-~GA~VtlI~Gp~ 306 (475)
T PRK13982 286 FAIAAAAAA-AGAEVTLISGPV 306 (475)
T ss_pred HHHHHHHHH-CCCcEEEEeCCc
Confidence 468999999 999999999764
No 257
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=33.50 E-value=51 Score=28.48 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=19.8
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeCCc
Q 044624 9 HVIPFLALAHHLESTKNYTIAFVNTHL 35 (358)
Q Consensus 9 H~~P~l~La~~L~~~rGh~Vt~~t~~~ 35 (358)
|..-|...|.+|.+ +||+|+++....
T Consensus 47 ~~saMRhfa~~L~~-~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRA-KGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHH-TT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCCC
Confidence 56679999999999 999999999873
No 258
>PRK07004 replicative DNA helicase; Provisional
Probab=33.25 E-value=4.3e+02 Score=25.63 Aligned_cols=37 Identities=5% Similarity=0.050 Sum_probs=29.9
Q ss_pred ccCCCcChHHHHHHHHHHH-hCCCcEEEEEeCCcchhhh
Q 044624 3 PFMAQGHVIPFLALAHHLE-STKNYTIAFVNTHLNIKKI 40 (358)
Q Consensus 3 ~~p~~GH~~P~l~La~~L~-~~rGh~Vt~~t~~~~~~~~ 40 (358)
.-|+.|-..-++.+|..++ . .|+.|.|++.+.....+
T Consensus 220 arpg~GKT~~al~ia~~~a~~-~~~~v~~fSlEM~~~ql 257 (460)
T PRK07004 220 GRPSMGKTAFSMNIGEYVAVE-YGLPVAVFSMEMPGTQL 257 (460)
T ss_pred eCCCCCccHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHH
Confidence 3578888889999998876 5 69999999998766554
No 259
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=33.13 E-value=1.5e+02 Score=30.69 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=33.3
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCCCCcccccCCcchhhh--hh--------cCcceEecccccc
Q 044624 216 GSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIGFDINSEFRANDADGTQSALEA--LS--------HGVPINGWPLAAE 285 (358)
Q Consensus 216 GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~wlgG~~s~~ea--l~--------~GvP~l~~P~~~D 285 (358)
||.-..+.+.++.+++.|++.+...+.++ ||-+|..-| |+ .|+|+|++|-.-|
T Consensus 457 gtsR~~~~~~~~~i~~~l~~~~Id~LivI-----------------GGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTID 519 (745)
T TIGR02478 457 GTNRELPGKDLGMIAYYFQKHKIDGLLII-----------------GGFEAFEALLQLEQAREKYPAFRIPMVVIPATIS 519 (745)
T ss_pred ccCCCCchhHHHHHHHHHHHcCCCEEEEe-----------------CChHHHHHHHHHHHHHhhCCCCCccEEEeccccc
Confidence 44433334455666666766666666555 666655433 22 5899999997665
Q ss_pred c
Q 044624 286 Q 286 (358)
Q Consensus 286 Q 286 (358)
-
T Consensus 520 N 520 (745)
T TIGR02478 520 N 520 (745)
T ss_pred C
Confidence 4
No 260
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.62 E-value=78 Score=27.22 Aligned_cols=29 Identities=21% Similarity=0.380 Sum_probs=22.7
Q ss_pred cChHHHHHHHHHHHhCCCcEEEEEeCCcch
Q 044624 8 GHVIPFLALAHHLESTKNYTIAFVNTHLNI 37 (358)
Q Consensus 8 GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~ 37 (358)
|--.-..+++.-+.. .||.|++++++...
T Consensus 40 GKSvLsqr~~YG~L~-~g~~v~yvsTe~T~ 68 (235)
T COG2874 40 GKSVLSQRFAYGFLM-NGYRVTYVSTELTV 68 (235)
T ss_pred cHHHHHHHHHHHHHh-CCceEEEEEechhH
Confidence 334445678888889 99999999998654
No 261
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=32.52 E-value=74 Score=24.60 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=27.0
Q ss_pred ceEEEEeccCCCCCHHHHHHHHHHHHhC--CCcEEEEec
Q 044624 209 SVLYVSFGSQDTIAVSQMVQLAMALEAS--GKNFIWIVR 245 (358)
Q Consensus 209 ~vvyvs~GS~~~~~~~~~~~~~~al~~~--~~~~lw~~~ 245 (358)
.++.++|||......+.+..+.+.+++. +.++-|.+-
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 4899999999875556778888888643 456667654
No 262
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=32.45 E-value=93 Score=26.50 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhc-CCCCCcEEEECCCCccHHHHHHHhCCceEEE
Q 044624 92 HFKKLIIDLIDEQ-NGHKPLCIITDMFFGWCKEIAQEYGIFHAIF 135 (358)
Q Consensus 92 ~l~~ll~~~~~~~-~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~ 135 (358)
.++++++...+.. +. +.-+||+|--...+...|+++|||+..+
T Consensus 12 n~~al~~~~~~~~l~~-~i~~visn~~~~~~~~~A~~~gIp~~~~ 55 (207)
T PLN02331 12 NFRAIHDACLDGRVNG-DVVVVVTNKPGCGGAEYARENGIPVLVY 55 (207)
T ss_pred hHHHHHHHHHcCCCCe-EEEEEEEeCCCChHHHHHHHhCCCEEEe
Confidence 4455655543211 12 4578999987777889999999998765
No 263
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=32.34 E-value=64 Score=30.82 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcc
Q 044624 91 PHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIE 137 (358)
Q Consensus 91 ~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~ 137 (358)
..+.+++++. +||++|.... ...+|+++|||...+..
T Consensus 359 ~e~~~~i~~~-------~pDliig~~~---~~~~a~k~giP~~~~~~ 395 (421)
T cd01976 359 YELEEFVKRL-------KPDLIGSGIK---EKYVFQKMGIPFRQMHS 395 (421)
T ss_pred HHHHHHHHHh-------CCCEEEecCc---chhhhhhcCCCeEeCCc
Confidence 3455666665 8999998886 55689999999987653
No 264
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=32.20 E-value=80 Score=25.92 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=59.8
Q ss_pred cChHHHHHHHHHH-HhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEeccCCccC--------CCCCCCCC--CCCCCCc
Q 044624 8 GHVIPFLALAHHL-ESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETPFNIID--------HDLPPCTE--NTDSHPF 76 (358)
Q Consensus 8 GH~~P~l~La~~L-~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------~~~~~~~~--~~~~~~~ 76 (358)
+.+.=-+..++.| .+ .|.+|.+... .....+++. -++.++.++....+ ........ ......
T Consensus 17 ~~~e~~v~~a~~~~~~-~g~dViIsRG-~ta~~lr~~----~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~- 89 (176)
T PF06506_consen 17 ASLEEAVEEARQLLES-EGADVIISRG-GTAELLRKH----VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNII- 89 (176)
T ss_dssp --HHHHHHHHHHHHTT-TT-SEEEEEH-HHHHHHHCC-----SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-S-
T ss_pred ecHHHHHHHHHHhhHh-cCCeEEEECC-HHHHHHHHh----CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEeccccc-
Confidence 3445567888999 78 8999987766 355555553 35666655532100 00000000 000000
Q ss_pred hHHHHHHHHH--h------hchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEEEcchhHH
Q 044624 77 DVVRKLLEAT--L------SFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGF 141 (358)
Q Consensus 77 ~~~~~~~~~~--~------~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 141 (358)
.....+...+ + .....++..++..... ..|+||-+.. ...+|+++|+|++.+.++.-+
T Consensus 90 ~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~----G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 90 PGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAE----GVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp CCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHT----T--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred HHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHc----CCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 1122222222 1 1245677777766433 6899999884 468999999999998775443
No 265
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=32.10 E-value=1.2e+02 Score=24.91 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=34.0
Q ss_pred cCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEecc
Q 044624 4 FMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLETP 56 (358)
Q Consensus 4 ~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~p 56 (358)
.|+.|-..-.+.++..|.+ .|+.|-=+-++..++-=.. .|++.+.+.
T Consensus 13 ~PGvGKtTl~~ki~e~L~~-~g~kvgGf~t~EVR~gGkR-----~GF~Ivdl~ 59 (179)
T COG1618 13 RPGVGKTTLVLKIAEKLRE-KGYKVGGFITPEVREGGKR-----IGFKIVDLA 59 (179)
T ss_pred CCCccHHHHHHHHHHHHHh-cCceeeeEEeeeeecCCeE-----eeeEEEEcc
Confidence 4788888899999999999 9999976655555432222 567777653
No 266
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=32.05 E-value=76 Score=26.52 Aligned_cols=67 Identities=12% Similarity=0.031 Sum_probs=47.1
Q ss_pred eccccccchhhhhhhhccccceEEe----cccC-----CccccHHHHH----HHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 044624 279 GWPLAAEQFYNSNLLGEEVGVCAEV----ARGM-----NCAVLKEHIV----VKIELVMNETEKGKPMRMKDLEVKEIID 345 (358)
Q Consensus 279 ~~P~~~DQ~~na~~v~~~~G~G~~l----~~~~-----~~~~~~~~l~----~ai~~ll~~~~~~~~~r~~a~~l~~~~~ 345 (358)
+.|..-||...-..+-+.+..|+.= ++.+ =..++.+.|+ +.|.+||.|+ .+-+|-+++.+.+.
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~----~IIRnr~KI~Avi~ 97 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDA----GIIRHRGKIQAIIG 97 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc----hhHHhHHHHHHHHH
Confidence 5678899999888887776777752 2210 1245666665 6788999999 88777777877777
Q ss_pred Hhhc
Q 044624 346 NAFR 349 (358)
Q Consensus 346 ~a~~ 349 (358)
+|.+
T Consensus 98 NA~~ 101 (187)
T PRK10353 98 NARA 101 (187)
T ss_pred HHHH
Confidence 7653
No 267
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.97 E-value=45 Score=33.08 Aligned_cols=30 Identities=27% Similarity=0.456 Sum_probs=25.3
Q ss_pred CcChHHHHH---HHHHHHhCCCcEEEEEeCCcch
Q 044624 7 QGHVIPFLA---LAHHLESTKNYTIAFVNTHLNI 37 (358)
Q Consensus 7 ~GH~~P~l~---La~~L~~~rGh~Vt~~t~~~~~ 37 (358)
-||+.+++. +|+-++. +||+|.|+|..+-+
T Consensus 22 lGH~~~~l~ADv~aRy~Rl-~G~~v~fvtGtDeH 54 (558)
T COG0143 22 LGHLYTYLAADVYARYLRL-RGYEVFFLTGTDEH 54 (558)
T ss_pred hhhHHHHHHHHHHHHHHHh-cCCeEEEEeccCCC
Confidence 499998776 8999999 99999999976544
No 268
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=31.77 E-value=2.8e+02 Score=22.51 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=22.7
Q ss_pred cCCCcChHHHH-HHHHHHHhCCCcEEEEEeCCc
Q 044624 4 FMAQGHVIPFL-ALAHHLESTKNYTIAFVNTHL 35 (358)
Q Consensus 4 ~p~~GH~~P~l-~La~~L~~~rGh~Vt~~t~~~ 35 (358)
+...+.+..++ .+|.+|++ +|++|.=+....
T Consensus 6 ~~~~~~~d~lL~~~a~~L~~-~G~rv~G~vQ~~ 37 (159)
T PF10649_consen 6 YDDGGDIDALLAAFAARLRA-RGVRVAGLVQRN 37 (159)
T ss_pred cCCCCCHHHHHHHHHHHHHh-CCCeEEEEeccc
Confidence 34445555544 59999999 999998877654
No 269
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=31.34 E-value=83 Score=27.51 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=22.4
Q ss_pred CcE-EEECCCCc-cHHHHHHHhCCceEEEcchh
Q 044624 109 PLC-IITDMFFG-WCKEIAQEYGIFHAIFIEGG 139 (358)
Q Consensus 109 pd~-vV~D~~~~-~~~~~A~~lgiP~v~~~~~~ 139 (358)
||+ +|.|+..- -|..=|.++|||+|.+.-+.
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 875 55666543 35667899999999987553
No 270
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=31.11 E-value=74 Score=27.11 Aligned_cols=32 Identities=31% Similarity=0.280 Sum_probs=23.5
Q ss_pred CCcEEEECCCC--ccHHHHHHHhCCceEEEcchh
Q 044624 108 KPLCIITDMFF--GWCKEIAQEYGIFHAIFIEGG 139 (358)
Q Consensus 108 ~pd~vV~D~~~--~~~~~~A~~lgiP~v~~~~~~ 139 (358)
+||+||..... .....-..+.+||++.+....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 89999998877 344556678899999987754
No 271
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=31.03 E-value=1.1e+02 Score=30.00 Aligned_cols=75 Identities=15% Similarity=0.098 Sum_probs=51.8
Q ss_pred cCCcchhhhhhcCcceEeccccc--cchhhhhh--hhccccceEEecccCCccccHHHHHHHHHHHhcCCCCCHHHHHHH
Q 044624 262 DGTQSALEALSHGVPINGWPLAA--EQFYNSNL--LGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNETEKGKPMRMKD 337 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~--v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~r~~a 337 (358)
||. |=++|+++|.+-|+.+..+ |--..... .... |.|+.... .++++++.++++.+. -|+.+-
T Consensus 381 cGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~-gtGf~f~~-----~~~~~l~~al~rA~~------~y~~~~ 447 (487)
T COG0297 381 CGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGV-GTGFLFLQ-----TNPDHLANALRRALV------LYRAPP 447 (487)
T ss_pred CcH-HHHHHHHcCCcceEcccCCccceecCccchhccCc-eeEEEEec-----CCHHHHHHHHHHHHH------HhhCCH
Confidence 887 4578999999888888755 44433322 2445 78888864 499999999998773 455554
Q ss_pred HHHHHHHHHhhc
Q 044624 338 LEVKEIIDNAFR 349 (358)
Q Consensus 338 ~~l~~~~~~a~~ 349 (358)
..++...++++.
T Consensus 448 ~~w~~~~~~~m~ 459 (487)
T COG0297 448 LLWRKVQPNAMG 459 (487)
T ss_pred HHHHHHHHhhcc
Confidence 556666666665
No 272
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=31.03 E-value=77 Score=30.38 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=21.8
Q ss_pred CCcEEEECCCCccHHHHHHHhCCceEEEc
Q 044624 108 KPLCIITDMFFGWCKEIAQEYGIFHAIFI 136 (358)
Q Consensus 108 ~pd~vV~D~~~~~~~~~A~~lgiP~v~~~ 136 (358)
+||++|.+.. ...+|+++|||++.++
T Consensus 372 ~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 372 KIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 7999999885 4688999999998664
No 273
>PLN02470 acetolactate synthase
Probab=30.82 E-value=1.2e+02 Score=30.42 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.8
Q ss_pred CcchhhhhhcCcceEecc
Q 044624 264 TQSALEALSHGVPINGWP 281 (358)
Q Consensus 264 ~~s~~eal~~GvP~l~~P 281 (358)
.+.+.+|...++|||++.
T Consensus 92 l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 92 VTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHHHhcCCcEEEEe
Confidence 557899999999999985
No 274
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=30.64 E-value=75 Score=30.39 Aligned_cols=26 Identities=15% Similarity=0.014 Sum_probs=22.0
Q ss_pred CCcEEEECCCCccHHHHHHHhCCceEEEc
Q 044624 108 KPLCIITDMFFGWCKEIAQEYGIFHAIFI 136 (358)
Q Consensus 108 ~pd~vV~D~~~~~~~~~A~~lgiP~v~~~ 136 (358)
+||+||.+... ..+|+++|+|.+.++
T Consensus 371 ~pdliig~~~~---~~~a~~~~ip~i~~~ 396 (428)
T cd01965 371 PVDLLIGNSHG---RYLARDLGIPLVRVG 396 (428)
T ss_pred CCCEEEECchh---HHHHHhcCCCEEEec
Confidence 79999999864 578899999998754
No 275
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=30.63 E-value=4.6e+02 Score=24.62 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=28.4
Q ss_pred CCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhh
Q 044624 5 MAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKI 40 (358)
Q Consensus 5 p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~ 40 (358)
|+.|--.-++.++..+++ +|..|.+++.+...+.+
T Consensus 91 pG~GKStLllq~a~~~a~-~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 91 PGIGKSTLLLQVAARLAK-RGGKVLYVSGEESPEQI 125 (372)
T ss_pred CCCCHHHHHHHHHHHHHh-cCCeEEEEECCcCHHHH
Confidence 567777888999999999 99999999887655443
No 276
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=30.27 E-value=37 Score=30.41 Aligned_cols=92 Identities=22% Similarity=0.183 Sum_probs=56.6
Q ss_pred hhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCCCCcccccCCcchh--hhhh
Q 044624 195 AELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIGFDINSEFRANDADGTQSAL--EALS 272 (358)
Q Consensus 195 ~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~wlgG~~s~~--eal~ 272 (358)
..-..-|||..-.=+--|+.=+.+ ++.+.|...+-..++.++.+ +.....+- + ||||+++ -|-.
T Consensus 28 n~fy~l~Ld~~~~Yscayf~~~~~-tL~eAQ~~k~~~~~~kl~L~------~G~~lLDi-G------CGWG~l~~~aA~~ 93 (283)
T COG2230 28 NDFYRLFLDPSMTYSCAYFEDPDM-TLEEAQRAKLDLILEKLGLK------PGMTLLDI-G------CGWGGLAIYAAEE 93 (283)
T ss_pred hHHHHHhcCCCCceeeEEeCCCCC-ChHHHHHHHHHHHHHhcCCC------CCCEEEEe-C------CChhHHHHHHHHH
Confidence 445667888654333444433333 45666666666666654321 11000000 0 9999774 5667
Q ss_pred cCcceEeccccccchhhhhhhhccccce
Q 044624 273 HGVPINGWPLAAEQFYNSNLLGEEVGVC 300 (358)
Q Consensus 273 ~GvP~l~~P~~~DQ~~na~~v~~~~G~G 300 (358)
+||=++++-+...|..+++.-.+..|+-
T Consensus 94 y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 94 YGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred cCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 7999999999999999999844444877
No 277
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.18 E-value=96 Score=22.34 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcc
Q 044624 314 EHIVVKIELVMNETEKGKPMRMKDLEVKEIIDNAFRN 350 (358)
Q Consensus 314 ~~l~~ai~~ll~~~~~~~~~r~~a~~l~~~~~~a~~~ 350 (358)
.++-..++++++|. +.-+|.++.++....+..+
T Consensus 16 ~q~~~lL~~Ii~Dt----tVPRNIRraA~~a~e~L~~ 48 (93)
T COG1698 16 NQVMQLLDEIIQDT----TVPRNIRRAAEEAKEALNN 48 (93)
T ss_pred HHHHHHHHHHHccc----cccHHHHHHHHHHHHHHhC
Confidence 44555677888998 7777777777777666655
No 278
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=29.58 E-value=1e+02 Score=24.82 Aligned_cols=41 Identities=12% Similarity=0.000 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEECCCCcc---HHHHHHHhCCceEEEcc
Q 044624 90 KPHFKKLIIDLIDEQNGHKPLCIITDMFFGW---CKEIAQEYGIFHAIFIE 137 (358)
Q Consensus 90 ~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~---~~~~A~~lgiP~v~~~~ 137 (358)
...+.+++++. +||+|+.-....+ +..+|.+||.|++.-.+
T Consensus 79 a~~l~~~~~~~-------~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 79 ADALAELIKEE-------GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp HHHHHHHHHHH-------T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHHHHHhc-------CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 34556666666 8999999886654 45799999999988654
No 279
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=28.98 E-value=1.3e+02 Score=27.70 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=44.3
Q ss_pred hhHHHHHhhcCCCCceEEEEeccCCCC----CHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCCCCcccccCCcchhhh
Q 044624 195 AELCKNWLDRKPCRSVLYVSFGSQDTI----AVSQMVQLAMALEASGKNFIWIVRPPIGFDINSEFRANDADGTQSALEA 270 (358)
Q Consensus 195 ~~~~~~wld~~~~~~vvyvs~GS~~~~----~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~wlgG~~s~~ea 270 (358)
+..+..|..... + -+||.-.. .++.++.+++.|++.+...+.+++ |-+|...|
T Consensus 54 ~~~v~~~~~~GG--t----~LgtsR~~~~~~~~~~~~~~~~~l~~~~Id~LivIG-----------------GdgS~~~a 110 (324)
T TIGR02483 54 LEDVRGILPRGG--T----ILGSSRTNPFKYEEDGDDKIVANLKELGLDALIAIG-----------------GDGTLGIA 110 (324)
T ss_pred HHHHHHHHhCCC--c----cccCCCCCccccCHHHHHHHHHHHHHcCCCEEEEEC-----------------CchHHHHH
Confidence 455666665432 2 25664321 235678899999999998888874 44444333
Q ss_pred hh---cCcceEeccccccc
Q 044624 271 LS---HGVPINGWPLAAEQ 286 (358)
Q Consensus 271 l~---~GvP~l~~P~~~DQ 286 (358)
.. .|+|++++|-.-|-
T Consensus 111 ~~L~~~gi~vigiPkTIDN 129 (324)
T TIGR02483 111 RRLADKGLPVVGVPKTIDN 129 (324)
T ss_pred HHHHhcCCCEEeeccccCC
Confidence 22 58999999987664
No 280
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=28.86 E-value=3e+02 Score=25.80 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=14.9
Q ss_pred HHHHHHHhCCCcEEEEEeCC
Q 044624 15 ALAHHLESTKNYTIAFVNTH 34 (358)
Q Consensus 15 ~La~~L~~~rGh~Vt~~t~~ 34 (358)
.+|+.|.+ +||+|+++...
T Consensus 113 slA~~l~~-~G~~V~~~d~~ 131 (374)
T PRK11199 113 LFAKMLTL-SGYQVRILEQD 131 (374)
T ss_pred HHHHHHHH-CCCeEEEeCCC
Confidence 47788888 88888888753
No 281
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=28.86 E-value=69 Score=25.93 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=13.2
Q ss_pred CcchhhhhhcCcceEecc
Q 044624 264 TQSALEALSHGVPINGWP 281 (358)
Q Consensus 264 ~~s~~eal~~GvP~l~~P 281 (358)
.+.+.+|...++|+|++.
T Consensus 75 ~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 75 LNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 445677888888888875
No 282
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=28.63 E-value=92 Score=24.50 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=31.2
Q ss_pred cccCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhh
Q 044624 2 LPFMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKI 40 (358)
Q Consensus 2 ~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~ 40 (358)
.+.++.+|-.-..-++..|+. +|++|+++...-..+.+
T Consensus 9 ~~~~gD~H~lG~~iv~~~lr~-~G~eVi~LG~~vp~e~i 46 (137)
T PRK02261 9 GVIGADCHAVGNKILDRALTE-AGFEVINLGVMTSQEEF 46 (137)
T ss_pred EeCCCChhHHHHHHHHHHHHH-CCCEEEECCCCCCHHHH
Confidence 356788999999999999999 99999999976554443
No 283
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=28.25 E-value=57 Score=26.19 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCcEEEEEeCCc
Q 044624 14 LALAHHLESTKNYTIAFVNTHL 35 (358)
Q Consensus 14 l~La~~L~~~rGh~Vt~~t~~~ 35 (358)
..+|..|+. +||+|++.+.+.
T Consensus 12 ~AlA~~la~-~g~~V~l~~~~~ 32 (157)
T PF01210_consen 12 TALAALLAD-NGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHH-CTEEEEEETSCH
T ss_pred HHHHHHHHH-cCCEEEEEeccH
Confidence 478999999 999999999875
No 284
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=28.21 E-value=65 Score=27.56 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=24.5
Q ss_pred CCcChHHHHH---HHHHHHhCCCcEEEEEeCCcc
Q 044624 6 AQGHVIPFLA---LAHHLESTKNYTIAFVNTHLN 36 (358)
Q Consensus 6 ~~GH~~P~l~---La~~L~~~rGh~Vt~~t~~~~ 36 (358)
=.||+.+++. |++.|+. +|++|.|++.-..
T Consensus 35 HiGH~r~~v~~Dvl~R~lr~-~G~~V~~~~g~dd 67 (213)
T cd00672 35 HIGHARTYVVFDVLRRYLED-LGYKVRYVQNITD 67 (213)
T ss_pred ccccchhHHHHHHHHHHHHh-cCCeeEEEeecCC
Confidence 3589988775 8899999 9999999987543
No 285
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.88 E-value=91 Score=27.09 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=21.1
Q ss_pred CCcEEEECCCCcc--HHH-HHHHhCCceEEEcch
Q 044624 108 KPLCIITDMFFGW--CKE-IAQEYGIFHAIFIEG 138 (358)
Q Consensus 108 ~pd~vV~D~~~~~--~~~-~A~~lgiP~v~~~~~ 138 (358)
+||+||....... ... +-+.+|||++.+...
T Consensus 74 ~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 74 KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 8999998765443 233 334489999888653
No 286
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=27.78 E-value=4.2e+02 Score=23.20 Aligned_cols=91 Identities=19% Similarity=0.232 Sum_probs=57.0
Q ss_pred hhcCCCC-ceEEEEeccCCCCCHHHHHHHHHH-HHhCCCcEEEEecCCCCCCCCCCCCcccccCCcchhhhhh-cCcceE
Q 044624 202 LDRKPCR-SVLYVSFGSQDTIAVSQMVQLAMA-LEASGKNFIWIVRPPIGFDINSEFRANDADGTQSALEALS-HGVPIN 278 (358)
Q Consensus 202 ld~~~~~-~vvyvs~GS~~~~~~~~~~~~~~a-l~~~~~~~lw~~~~~~~~~~~~~~~~~wlgG~~s~~eal~-~GvP~l 278 (358)
||+..+| .+-...+||-.-+.+++..+.... +++.+-.|+.++.++...+.+ -..-|.+. .|+|.+
T Consensus 23 lDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP-----------~~ARE~l~~~~iP~I 91 (277)
T PRK00994 23 LDERADREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGP-----------KKAREILKAAGIPCI 91 (277)
T ss_pred HHhhhcccCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCc-----------hHHHHHHHhcCCCEE
Confidence 5555444 356668999999999988765544 467788999999887533222 12223332 488999
Q ss_pred eccccccchhhhhhhhccccceEEecc
Q 044624 279 GWPLAAEQFYNSNLLGEEVGVCAEVAR 305 (358)
Q Consensus 279 ~~P~~~DQ~~na~~v~~~~G~G~~l~~ 305 (358)
++--..-...- ..+.+. |.|.-+-+
T Consensus 92 vI~D~p~~K~~-d~l~~~-g~GYIivk 116 (277)
T PRK00994 92 VIGDAPGKKVK-DAMEEQ-GLGYIIVK 116 (277)
T ss_pred EEcCCCccchH-HHHHhc-CCcEEEEe
Confidence 88432222211 456666 99887644
No 287
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=27.68 E-value=64 Score=24.91 Aligned_cols=34 Identities=9% Similarity=0.031 Sum_probs=27.4
Q ss_pred cChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 044624 8 GHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKS 42 (358)
Q Consensus 8 GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~ 42 (358)
++..-...+.++|.+ +|++|+++.++...+.+..
T Consensus 11 ~~~~~~~~~l~~L~~-~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 11 IAAYKAPDLLRRLKR-AGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp GGGGGHHHHHHHHHT-TTSEEEEEESHHHHHHSHH
T ss_pred HHHHHHHHHHHHHhh-CCCEEEEEECCcHHHHhhh
Confidence 444448899999999 9999999999877666654
No 288
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=27.34 E-value=77 Score=30.94 Aligned_cols=37 Identities=3% Similarity=-0.024 Sum_probs=30.8
Q ss_pred cCCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhh
Q 044624 4 FMAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIK 41 (358)
Q Consensus 4 ~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~ 41 (358)
-|+.|--.-.++++.+.++ +|..|.+++.+...+.+.
T Consensus 271 ~~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eEs~~~i~ 307 (484)
T TIGR02655 271 ATGTGKTLLVSKFLENACA-NKERAILFAYEESRAQLL 307 (484)
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeCCHHHHH
Confidence 4677888888999999999 999999999987766554
No 289
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=27.34 E-value=1.6e+02 Score=22.18 Aligned_cols=43 Identities=7% Similarity=0.150 Sum_probs=33.5
Q ss_pred CCCcChHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEE
Q 044624 5 MAQGHVIPFLALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFL 53 (358)
Q Consensus 5 p~~GH~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~ 53 (358)
...|+-..++.+.+.+++ +|..|..+|.....+..+. ....+.
T Consensus 61 s~sg~~~~~~~~~~~ak~-~g~~vi~iT~~~~~~l~~~-----ad~~l~ 103 (131)
T PF01380_consen 61 SYSGETRELIELLRFAKE-RGAPVILITSNSESPLARL-----ADIVLY 103 (131)
T ss_dssp ESSSTTHHHHHHHHHHHH-TTSEEEEEESSTTSHHHHH-----SSEEEE
T ss_pred eccccchhhhhhhHHHHh-cCCeEEEEeCCCCCchhhh-----CCEEEE
Confidence 356888999999999999 9999999998766655554 445554
No 290
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=26.78 E-value=72 Score=26.92 Aligned_cols=31 Identities=3% Similarity=-0.069 Sum_probs=24.3
Q ss_pred cChHH-HHHHHHHHHhCCCcEEEEEeCCcchhh
Q 044624 8 GHVIP-FLALAHHLESTKNYTIAFVNTHLNIKK 39 (358)
Q Consensus 8 GH~~P-~l~La~~L~~~rGh~Vt~~t~~~~~~~ 39 (358)
+...- ...|.+.|.+ +||+|.++.++.-.+.
T Consensus 16 iaa~k~a~~lir~L~k-~G~~V~vv~T~aA~~~ 47 (196)
T PRK08305 16 HCTYDEVMPEIEKLVD-EGAEVTPIVSYTVQTT 47 (196)
T ss_pred HHHHHHHHHHHHHHHh-CcCEEEEEECHhHHHH
Confidence 33444 4889999999 9999999999765543
No 291
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.50 E-value=68 Score=30.41 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=21.8
Q ss_pred CcChHHHHHHHHHHHhCCCcEEEEEeCC
Q 044624 7 QGHVIPFLALAHHLESTKNYTIAFVNTH 34 (358)
Q Consensus 7 ~GH~~P~l~La~~L~~~rGh~Vt~~t~~ 34 (358)
-||+.|+..|. .|++ .||+|+++...
T Consensus 48 lGhlv~l~kL~-~fQ~-aGh~~ivLigd 73 (401)
T COG0162 48 LGHLVPLMKLR-RFQD-AGHKPIVLIGD 73 (401)
T ss_pred hhhHHHHHHHH-HHHH-CCCeEEEEecc
Confidence 48999998875 5888 89999999874
No 292
>PRK14072 6-phosphofructokinase; Provisional
Probab=26.14 E-value=1.5e+02 Score=28.38 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCCCCcccccCCcchhhh--h-----hcC--cceEeccccccc
Q 044624 222 AVSQMVQLAMALEASGKNFIWIVRPPIGFDINSEFRANDADGTQSALEA--L-----SHG--VPINGWPLAAEQ 286 (358)
Q Consensus 222 ~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~wlgG~~s~~ea--l-----~~G--vP~l~~P~~~DQ 286 (358)
.++..+.+++.|++.+...+.+++. -||..-| | .+| +|+|++|-.-|-
T Consensus 88 ~~~~~~~~~~~l~~~~Id~LivIGG-----------------dgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDN 144 (416)
T PRK14072 88 DRAEYERLLEVFKAHDIGYFFYNGG-----------------NDSMDTALKVSQLAKKMGYPIRCIGIPKTIDN 144 (416)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEECC-----------------hHHHHHHHHHHHHHHHhCCCceEEEeeecccC
Confidence 3567889999999999998888854 3443222 1 146 999999987664
No 293
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=25.98 E-value=64 Score=28.82 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCcEEEEEeCCcch
Q 044624 14 LALAHHLESTKNYTIAFVNTHLNI 37 (358)
Q Consensus 14 l~La~~L~~~rGh~Vt~~t~~~~~ 37 (358)
-+|..+|.+ .||+||++|-....
T Consensus 12 ~~L~~~L~~-~gh~v~iltR~~~~ 34 (297)
T COG1090 12 RALTARLRK-GGHQVTILTRRPPK 34 (297)
T ss_pred HHHHHHHHh-CCCeEEEEEcCCcc
Confidence 368889999 99999999965443
No 294
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.96 E-value=1.2e+02 Score=28.99 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=21.3
Q ss_pred CCcEEEECCCCccHHHHHHHhCCceEEEc
Q 044624 108 KPLCIITDMFFGWCKEIAQEYGIFHAIFI 136 (358)
Q Consensus 108 ~pd~vV~D~~~~~~~~~A~~lgiP~v~~~ 136 (358)
+||++|.... ...+|+++|||++.++
T Consensus 377 ~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 377 PVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred CCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 7999998774 5688999999988664
No 295
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.94 E-value=2.9e+02 Score=24.31 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCCCCCCCCCCCcccc---cCCcchhhhhh-cCcceEeccccccchhhhhhhhccccc
Q 044624 224 SQMVQLAMALEASGKNFIWIVRPPIGFDINSEFRANDA---DGTQSALEALS-HGVPINGWPLAAEQFYNSNLLGEEVGV 299 (358)
Q Consensus 224 ~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~wl---gG~~s~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~~G~ 299 (358)
...+++.+-|.+.+..+.|...... . ....+.+ ||=||++.|++ .++|++++- .-+ +
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~-~----~~~~d~vi~iGGDGT~L~a~~~~~~Pilgin--------~G~------l 73 (256)
T PRK14075 13 KEAKFLKEKISKEHEVVEFCEASAS-G----KVTADLIIVVGGDGTVLKAAKKVGTPLVGFK--------AGR------L 73 (256)
T ss_pred HHHHHHHHHHHHcCCeeEeeccccc-c----cCCCCEEEEECCcHHHHHHHHHcCCCEEEEe--------CCC------C
Confidence 4446677777777777776643220 1 1111322 99999999977 467766663 111 1
Q ss_pred eEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 300 CAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 300 G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
|.- ..++.+++.+++.++++++
T Consensus 74 Gfl------~~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 74 GFL------SSYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred ccc------cccCHHHHHHHHHHHHcCC
Confidence 211 2356788889999988765
No 296
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=25.78 E-value=77 Score=27.02 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCcEEEEEeCCcch
Q 044624 14 LALAHHLESTKNYTIAFVNTHLNI 37 (358)
Q Consensus 14 l~La~~L~~~rGh~Vt~~t~~~~~ 37 (358)
-.||++|++ .||+|++.+.....
T Consensus 14 ~alA~~~a~-ag~eV~igs~r~~~ 36 (211)
T COG2085 14 SALALRLAK-AGHEVIIGSSRGPK 36 (211)
T ss_pred HHHHHHHHh-CCCeEEEecCCChh
Confidence 468899999 99999999876554
No 297
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=25.72 E-value=1.3e+02 Score=26.78 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=23.1
Q ss_pred ceEEEEeccCCCCCHH-HHHHHHHHHHh--CCCcEEEEecC
Q 044624 209 SVLYVSFGSQDTIAVS-QMVQLAMALEA--SGKNFIWIVRP 246 (358)
Q Consensus 209 ~vvyvs~GS~~~~~~~-~~~~~~~al~~--~~~~~lw~~~~ 246 (358)
.++.|||||....... -+..+.+.+++ .+..+-|.+.+
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 3789999998765544 56666666665 37888888754
No 298
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=25.66 E-value=1e+02 Score=30.31 Aligned_cols=26 Identities=12% Similarity=-0.058 Sum_probs=21.3
Q ss_pred CCcEEEECCCCccHHHHHHHhCCceEEEc
Q 044624 108 KPLCIITDMFFGWCKEIAQEYGIFHAIFI 136 (358)
Q Consensus 108 ~pd~vV~D~~~~~~~~~A~~lgiP~v~~~ 136 (358)
+||++|.+.. +..+|+++|||.+.+.
T Consensus 437 ~~DlliG~s~---~k~~a~~~giPlir~g 462 (515)
T TIGR01286 437 PVDFLIGNSY---GKYIQRDTLVPLIRIG 462 (515)
T ss_pred CCCEEEECch---HHHHHHHcCCCEEEec
Confidence 7999998774 5678999999988764
No 299
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=25.53 E-value=1.1e+02 Score=29.11 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=22.1
Q ss_pred CCcEEEECCCCccHHHHHHHhCCceEEEcc
Q 044624 108 KPLCIITDMFFGWCKEIAQEYGIFHAIFIE 137 (358)
Q Consensus 108 ~pd~vV~D~~~~~~~~~A~~lgiP~v~~~~ 137 (358)
+||++|... .+..+|+++|||.+.+..
T Consensus 350 ~pDl~Ig~s---~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 350 RPDLAIGTT---PLVQYAKEKGIPALYYTN 376 (416)
T ss_pred CCCEEEeCC---hhhHHHHHhCCCEEEecC
Confidence 899999874 366789999999988653
No 300
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=25.32 E-value=91 Score=25.90 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhhhh
Q 044624 13 FLALAHHLESTKNYTIAFVNTHLNIKKIK 41 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~~~~~~~ 41 (358)
...|.+.|.+ +|++|.++.|+.-.+.+.
T Consensus 15 a~~lir~L~~-~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 15 GIRLLEVLKE-AGVEVHLVISDWAKETIK 42 (181)
T ss_pred HHHHHHHHHH-CCCEEEEEECccHHHHHH
Confidence 4679999999 999999999987666554
No 301
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=25.16 E-value=1.1e+02 Score=24.89 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=16.1
Q ss_pred cCCcchhhhhhcCcceEecc
Q 044624 262 DGTQSALEALSHGVPINGWP 281 (358)
Q Consensus 262 gG~~s~~eal~~GvP~l~~P 281 (358)
.+.+.+.||...++|||++.
T Consensus 74 n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 74 NLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred HHhHHHHHHHhcCCCEEEEE
Confidence 44567789999999999984
No 302
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=24.86 E-value=91 Score=27.03 Aligned_cols=27 Identities=11% Similarity=0.028 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCcch
Q 044624 10 VIPFLALAHHLESTKNYTIAFVNTHLNI 37 (358)
Q Consensus 10 ~~P~l~La~~L~~~rGh~Vt~~t~~~~~ 37 (358)
+-+++.+.+.|.+ +||.|.|+|.....
T Consensus 122 ip~al~l~~~l~~-~G~~Vf~lTGR~e~ 148 (229)
T TIGR01675 122 LPEGLKLYQKIIE-LGIKIFLLSGRWEE 148 (229)
T ss_pred CHHHHHHHHHHHH-CCCEEEEEcCCChH
Confidence 4578999999999 99999999987643
No 303
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=24.48 E-value=5.2e+02 Score=23.19 Aligned_cols=120 Identities=11% Similarity=-0.002 Sum_probs=65.7
Q ss_pred HHhhcCCCCceEEEEeccCC---CCCHHHHHHHHHHHHhCCCcEEEEecCCCC------CCC--CCCCCc------c---
Q 044624 200 NWLDRKPCRSVLYVSFGSQD---TIAVSQMVQLAMALEASGKNFIWIVRPPIG------FDI--NSEFRA------N--- 259 (358)
Q Consensus 200 ~wld~~~~~~vvyvs~GS~~---~~~~~~~~~~~~al~~~~~~~lw~~~~~~~------~~~--~~~~~~------~--- 259 (358)
.|+....+++.|.+.-|+.. ..+.+.+.++++.|.+.+.++++..+.+.. ... ...... +
T Consensus 171 ~~~~~~~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~a 250 (319)
T TIGR02193 171 AFLGHALPAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAA 250 (319)
T ss_pred hhhhccCCCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHH
Confidence 34443334556666666533 457788899999987767777766453221 000 000000 0
Q ss_pred cc--------cCCcchhhhhhcCcceEeccccccchhhhhhhhccccceEE-ecccCCccccHHHHHHHHHHHh
Q 044624 260 DA--------DGTQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGVCAE-VARGMNCAVLKEHIVVKIELVM 324 (358)
Q Consensus 260 wl--------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~-l~~~~~~~~~~~~l~~ai~~ll 324 (358)
.+ +-.|-++=|.+.|+|.|++ |+ +.+..+.. =||-... +....-..+++++|.++++++|
T Consensus 251 li~~a~l~I~~DSgp~HlAaa~g~P~i~l--fg--~t~p~~~~-P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 251 LLAGADAVVGVDTGLTHLAAALDKPTVTL--YG--ATDPGRTG-GYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HHHcCCEEEeCCChHHHHHHHcCCCEEEE--EC--CCCHhhcc-cCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 11 5677888899999999986 33 11222211 0122111 1111125799999999998875
No 304
>PLN02501 digalactosyldiacylglycerol synthase
Probab=24.46 E-value=5e+02 Score=27.01 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=23.6
Q ss_pred cccCCCcChHHHHHHHHHHHhCCCcEEEEEeC
Q 044624 2 LPFMAQGHVIPFLALAHHLESTKNYTIAFVNT 33 (358)
Q Consensus 2 ~~~p~~GH~~P~l~La~~L~~~rGh~Vt~~t~ 33 (358)
+||...--+||+++-|-.-.. .|++||++.+
T Consensus 333 lPWmTGtavnpL~rAayLa~~-~~~~VtlviP 363 (794)
T PLN02501 333 LPWMTGTAVNPLFRAAYLAKS-AKQNVTLLVP 363 (794)
T ss_pred CcccccccccHHHHHHHhccc-CCceEEEEEe
Confidence 467777789999996654334 5899999986
No 305
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=24.43 E-value=81 Score=27.27 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCcEEEEEeCC
Q 044624 14 LALAHHLESTKNYTIAFVNTH 34 (358)
Q Consensus 14 l~La~~L~~~rGh~Vt~~t~~ 34 (358)
..||++|.+ +||+|+++...
T Consensus 30 ~aLA~~L~~-~G~~V~li~r~ 49 (229)
T PRK06732 30 KIIAETFLA-AGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHh-CCCEEEEEECc
Confidence 468899999 99999999743
No 306
>PRK14071 6-phosphofructokinase; Provisional
Probab=24.31 E-value=1.6e+02 Score=27.59 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCCCCcccccCCcchhhh--hh--cCcceEeccccccc
Q 044624 223 VSQMVQLAMALEASGKNFIWIVRPPIGFDINSEFRANDADGTQSALEA--LS--HGVPINGWPLAAEQ 286 (358)
Q Consensus 223 ~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~wlgG~~s~~ea--l~--~GvP~l~~P~~~DQ 286 (358)
++..+.+++.|++.+...+.+++ |-+|..-+ |+ +|+|++++|-.-|-
T Consensus 93 ~~~~~~~~~~l~~~~Id~Li~IG-----------------GdgS~~~a~~L~~~~~i~vIgiPkTIDN 143 (360)
T PRK14071 93 RDRSQEIIDGYHSLGLDALIGIG-----------------GDGSLAILRRLAQQGGINLVGIPKTIDN 143 (360)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEC-----------------ChhHHHHHHHHHHhcCCcEEEecccccC
Confidence 34567899999999998888774 44444222 11 49999999976654
No 307
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=24.20 E-value=76 Score=27.07 Aligned_cols=42 Identities=12% Similarity=0.006 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEECCCCcc-------HHHHHHHhCCceEEEcc
Q 044624 91 PHFKKLIIDLIDEQNGHKPLCIITDMFFGW-------CKEIAQEYGIFHAIFIE 137 (358)
Q Consensus 91 ~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~-------~~~~A~~lgiP~v~~~~ 137 (358)
+.+.+.++.+. . .||+|++|-+-.. |..+...+++|.|.+.=
T Consensus 81 p~l~~~~~~l~----~-~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK 129 (208)
T cd06559 81 PPLLEALEKLK----T-KPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAK 129 (208)
T ss_pred HHHHHHHHhCC----C-CCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEc
Confidence 44556666652 1 6999999997654 22344466788887643
No 308
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=24.19 E-value=1.7e+02 Score=23.69 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEECCCCcc---HHHHHHHhCCceEEEcch
Q 044624 91 PHFKKLIIDLIDEQNGHKPLCIITDMFFGW---CKEIAQEYGIFHAIFIEG 138 (358)
Q Consensus 91 ~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~---~~~~A~~lgiP~v~~~~~ 138 (358)
..+.+++++. +||+|+.-.-..+ +..+|.+||.|.+.-.+.
T Consensus 73 ~al~~~i~~~-------~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~ 116 (168)
T cd01715 73 PALVALAKKE-------KPSHILAGATSFGKDLAPRVAAKLDVGLISDVTA 116 (168)
T ss_pred HHHHHHHHhc-------CCCEEEECCCccccchHHHHHHHhCCCceeeEEE
Confidence 3445566655 7999998886654 567999999998886554
No 309
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=24.18 E-value=1.7e+02 Score=23.61 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=24.5
Q ss_pred HHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEEe
Q 044624 14 LALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFLE 54 (358)
Q Consensus 14 l~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~ 54 (358)
..|+++|.+ +||+|+.++-......- . .+++.+.
T Consensus 12 ~~l~~~L~~-~~~~V~~~~R~~~~~~~-~-----~~~~~~~ 45 (183)
T PF13460_consen 12 RALAKQLLR-RGHEVTALVRSPSKAED-S-----PGVEIIQ 45 (183)
T ss_dssp HHHHHHHHH-TTSEEEEEESSGGGHHH-C-----TTEEEEE
T ss_pred HHHHHHHHH-CCCEEEEEecCchhccc-c-----cccccce
Confidence 458999999 99999999976442221 2 6777763
No 310
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=23.83 E-value=13 Score=21.35 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=16.4
Q ss_pred cccCCCcChHHHHHHHHHHHhCCCc
Q 044624 2 LPFMAQGHVIPFLALAHHLESTKNY 26 (358)
Q Consensus 2 ~~~p~~GH~~P~l~La~~L~~~rGh 26 (358)
=+||++|-+||-+++---|-. .||
T Consensus 16 PTFPGqGP~NPKir~Pyplpn-~g~ 39 (39)
T PF08026_consen 16 PTFPGQGPFNPKIRWPYPLPN-PGH 39 (39)
T ss_pred CcCCCCCCCCccccccccCCC-CCC
Confidence 367888988887776555554 444
No 311
>PLN02929 NADH kinase
Probab=23.80 E-value=4.6e+02 Score=23.81 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCCCCcccc---cCCcchhhhhh---cCcceEeccccc------cchhh
Q 044624 222 AVSQMVQLAMALEASGKNFIWIVRPPIGFDINSEFRANDA---DGTQSALEALS---HGVPINGWPLAA------EQFYN 289 (358)
Q Consensus 222 ~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~wl---gG~~s~~eal~---~GvP~l~~P~~~------DQ~~n 289 (358)
..+.++.+.+-|++.|..+.-+.+.. + .......+.+ ||=||++.|.+ .++|++++=.-. .++.|
T Consensus 32 h~~~~~~~~~~L~~~gi~~~~v~r~~--~-~~~~~~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~ 108 (301)
T PLN02929 32 HKDTVNFCKDILQQKSVDWECVLRNE--L-SQPIRDVDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSD 108 (301)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeeccc--c-ccccCCCCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccc
Confidence 44556667777887777663333221 1 0000111322 99999999844 578988874421 11222
Q ss_pred hhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 290 SNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 290 a~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
.--.. . -.|.- ..++.+++.++++++++++
T Consensus 109 ~~~~~-r-~lGfL------~~~~~~~~~~~L~~il~g~ 138 (301)
T PLN02929 109 EFDAR-R-STGHL------CAATAEDFEQVLDDVLFGR 138 (301)
T ss_pred ccccc-c-Ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 21110 1 12322 2366899999999999875
No 312
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=23.76 E-value=1.5e+02 Score=20.67 Aligned_cols=29 Identities=21% Similarity=0.076 Sum_probs=20.9
Q ss_pred CCcEEEECCCCcc--HHHHHHHhCCceEEEc
Q 044624 108 KPLCIITDMFFGW--CKEIAQEYGIFHAIFI 136 (358)
Q Consensus 108 ~pd~vV~D~~~~~--~~~~A~~lgiP~v~~~ 136 (358)
+.--||++..... +..+|+++|||+++-.
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 5667777776654 4569999999998854
No 313
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=23.67 E-value=2e+02 Score=27.16 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=39.2
Q ss_pred CcchhhhhhcCcceEeccccccchhhhhhhhccccc-eEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 264 TQSALEALSHGVPINGWPLAAEQFYNSNLLGEEVGV-CAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 264 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~-G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
+.|+.-|++.|+|.+++- =|+.+...+.+. |. +..++. ..++.+.+.+.+.+.+.+-
T Consensus 294 ~HsaI~al~~g~p~i~i~---Y~~K~~~l~~~~-gl~~~~~~i---~~~~~~~l~~~~~e~~~~~ 351 (385)
T COG2327 294 LHSAIMALAFGVPAIAIA---YDPKVRGLMQDL-GLPGFAIDI---DPLDAEILSAVVLERLTKL 351 (385)
T ss_pred hHHHHHHHhcCCCeEEEe---ecHHHHHHHHHc-CCCcccccC---CCCchHHHHHHHHHHHhcc
Confidence 568899999999988873 344444545433 65 333444 5688899999888887654
No 314
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=23.64 E-value=65 Score=25.51 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=28.7
Q ss_pred ceEEEEeccCCCCCHHHHHHHHHHHH-----hCCCcEEEEecCCC
Q 044624 209 SVLYVSFGSQDTIAVSQMVQLAMALE-----ASGKNFIWIVRPPI 248 (358)
Q Consensus 209 ~vvyvs~GS~~~~~~~~~~~~~~al~-----~~~~~~lw~~~~~~ 248 (358)
.||+|+-|+-.+..-..+++++.... .....|+|+++...
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~ 47 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDAD 47 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TT
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchh
Confidence 48999999987766677777777666 33568899999754
No 315
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=23.60 E-value=1.9e+02 Score=23.62 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=22.0
Q ss_pred CCCceEEEEeccCCCCCHHHHHHHHHHHHhC
Q 044624 206 PCRSVLYVSFGSQDTIAVSQMVQLAMALEAS 236 (358)
Q Consensus 206 ~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~ 236 (358)
+.+-.+|+++||-.......++...+.|...
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 3445789999998765666667666777653
No 316
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=23.36 E-value=5.7e+02 Score=23.27 Aligned_cols=101 Identities=10% Similarity=-0.009 Sum_probs=60.6
Q ss_pred ccCCCcChHHHHHHHHHHHhC-CCcEEEEEeCCcchhhhhhcCCCCCCeEE-EeccCCccCCCCCCCCCCCCCCCchHHH
Q 044624 3 PFMAQGHVIPFLALAHHLEST-KNYTIAFVNTHLNIKKIKSSLPQSSPIHF-LETPFNIIDHDLPPCTENTDSHPFDVVR 80 (358)
Q Consensus 3 ~~p~~GH~~P~l~La~~L~~~-rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
-..+.|++.=..++.++|+++ -+.+|++++.+.+.+.++.. +.++- +.++.. .. . . ...
T Consensus 6 ~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----p~vd~vi~~~~~-------~~-----~-~--~~~ 66 (344)
T TIGR02201 6 KLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN----PDINALYGLDRK-------KA-----K-A--GER 66 (344)
T ss_pred EeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC----CCccEEEEeChh-------hh-----c-c--hHH
Confidence 345789999999999999994 48999999998887776653 45542 322210 00 0 0 000
Q ss_pred HHHHHHhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCccHHHHHHHhCCceEE
Q 044624 81 KLLEATLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGWCKEIAQEYGIFHAI 134 (358)
Q Consensus 81 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~~~~~A~~lgiP~v~ 134 (358)
.+.. ... +...++.. ++|++|.=........++...|+|.-.
T Consensus 67 ~~~~----~~~-l~~~lr~~-------~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 67 KLAN----QFH-LIKVLRAN-------RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HHHH----HHH-HHHHHHhC-------CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0100 111 11223333 899998655445566778888999654
No 317
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=23.18 E-value=1e+02 Score=27.63 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 044624 14 LALAHHLESTKNYTIAFVNTHLNIKKIKS 42 (358)
Q Consensus 14 l~La~~L~~~rGh~Vt~~t~~~~~~~~~~ 42 (358)
..+|..|++ +||+|+++..+...+.+..
T Consensus 13 ~~~a~~L~~-~g~~V~~~~r~~~~~~~~~ 40 (305)
T PRK12921 13 GTFGGRLLE-AGRDVTFLVRPKRAKALRE 40 (305)
T ss_pred HHHHHHHHH-CCCceEEEecHHHHHHHHh
Confidence 357889999 9999999987444444443
No 318
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=22.72 E-value=6e+02 Score=23.76 Aligned_cols=109 Identities=16% Similarity=0.041 Sum_probs=64.0
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCC-----CCCCCCCCCcccc---------------cCCcchhhh
Q 044624 211 LYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPI-----GFDINSEFRANDA---------------DGTQSALEA 270 (358)
Q Consensus 211 vyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~-----~~~~~~~~~~~wl---------------gG~~s~~ea 270 (358)
+++. |-.+..+.+++.++++.+.+.+.+++-...... ++......-..|+ -..-++-++
T Consensus 120 ~~ia-Gpc~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l 198 (360)
T PRK12595 120 SFIF-GPCSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVISEIVNPADVEVA 198 (360)
T ss_pred eeEE-ecccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHH
Confidence 3344 665556788888999999988888774321110 1111110000122 223344455
Q ss_pred hhcCcceEeccccc-cchhhhhhhhccccceEEecccCCcc-ccHHHHHHHHHHHhc
Q 044624 271 LSHGVPINGWPLAA-EQFYNSNLLGEEVGVCAEVARGMNCA-VLKEHIVVKIELVMN 325 (358)
Q Consensus 271 l~~GvP~l~~P~~~-DQ~~na~~v~~~~G~G~~l~~~~~~~-~~~~~l~~ai~~ll~ 325 (358)
..+ ++++-+|-+- .|+.-...+.+. |.=+.+.+ +. .+.+++..++..+..
T Consensus 199 ~~~-vd~lkI~s~~~~n~~LL~~~a~~-gkPVilk~---G~~~t~~e~~~Ave~i~~ 250 (360)
T PRK12595 199 LDY-VDVIQIGARNMQNFELLKAAGRV-NKPVLLKR---GLSATIEEFIYAAEYIMS 250 (360)
T ss_pred HHh-CCeEEECcccccCHHHHHHHHcc-CCcEEEeC---CCCCCHHHHHHHHHHHHH
Confidence 556 7777777544 444555555544 66677776 55 699999999998874
No 319
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=22.58 E-value=2.4e+02 Score=22.85 Aligned_cols=46 Identities=9% Similarity=0.002 Sum_probs=32.6
Q ss_pred HhhchHHHHHHHHHHhhhcCCCCCcEEEECCCCcc---------------HHHHHHHhCCceEEEcch
Q 044624 86 TLSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFGW---------------CKEIAQEYGIFHAIFIEG 138 (358)
Q Consensus 86 ~~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~---------------~~~~A~~lgiP~v~~~~~ 138 (358)
+......+.+++++. +||.+..+..++. ...++.+.|||.+-+.+.
T Consensus 42 L~~I~~~l~~~i~~y-------~P~~~aiE~~F~~~N~~sa~~lg~arGvilla~~~~~ipv~Ey~P~ 102 (156)
T TIGR00228 42 LKLIYAGVTEIITQF-------QPNYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAAR 102 (156)
T ss_pred HHHHHHHHHHHHHHh-------CCCEEEEeHHhhccCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 345677888999888 8998888876542 123566778888877664
No 320
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=22.36 E-value=2e+02 Score=24.03 Aligned_cols=141 Identities=16% Similarity=0.142 Sum_probs=77.0
Q ss_pred CcEEEECCCCccHHHHHHHhCCceEEEcchhHHHHHHHhhhhccCCCCCCCCCccccCCCCCCcccCcccccCCCCCCCC
Q 044624 109 PLCIITDMFFGWCKEIAQEYGIFHAIFIEGGGFGFACYYSLWVDLPHRNTDSDEFLLLDFPEASTIHPVLRFTGSKAGAG 188 (358)
Q Consensus 109 pd~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~ 188 (358)
.-+||+|.-...+...|+++|||++.+.+. .+++
T Consensus 30 I~~vi~~~~~~~~~~~A~~~gip~~~~~~~----------------------------~~~~------------------ 63 (190)
T TIGR00639 30 VVLVISNKPDAYGLERAAQAGIPTFVLSLK----------------------------DFPS------------------ 63 (190)
T ss_pred EEEEEECCccchHHHHHHHcCCCEEEECcc----------------------------ccCc------------------
Confidence 456778875555678899999998775321 0110
Q ss_pred CCCCCChhHHHHHhhcCCCCceEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCCCCcccccCCcchh
Q 044624 189 KEHGISAELCKNWLDRKPCRSVLYVSFGSQDTIAVSQMVQLAMALEASGKNFIWIVRPPIGFDINSEFRANDADGTQSAL 268 (358)
Q Consensus 189 ~~~~~~~~~~~~wld~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~wlgG~~s~~ 268 (358)
....+.++.+||.+..+. +.|++|-+..++++.+... ..+++..- ++..+.| .|.+.+.
T Consensus 64 --~~~~~~~~~~~l~~~~~D--~iv~~~~~~il~~~~l~~~-------~~~~iNiH---------pslLP~y-rG~~p~~ 122 (190)
T TIGR00639 64 --REAFDQAIIEELRAHEVD--LVVLAGFMRILGPTFLSRF-------AGRILNIH---------PSLLPAF-PGLHAVE 122 (190)
T ss_pred --hhhhhHHHHHHHHhcCCC--EEEEeCcchhCCHHHHhhc-------cCCEEEEe---------CCcccCC-CCccHHH
Confidence 011244566777764443 4555555555554443322 22333222 1234455 8889999
Q ss_pred hhhhcCcceEeccccc--cchhhhhhhhccccceEEecccCCccccHHHHHHHHHHH
Q 044624 269 EALSHGVPINGWPLAA--EQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELV 323 (358)
Q Consensus 269 eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~l 323 (358)
.|+.+|....++-++. +..+...-+..+ -+.++ ..-|.++|...+.++
T Consensus 123 ~ai~~g~~~tGvTih~v~~~~D~G~Ii~q~---~~~i~----~~dt~~~L~~k~~~~ 172 (190)
T TIGR00639 123 QALEAGVKESGCTVHYVDEEVDTGPIIAQA---KVPIL----PEDTEETLEQRIHKQ 172 (190)
T ss_pred HHHHcCCCeEEEEEEEEcCCCcCCCEEEEE---EEEcC----CCCCHHHHHHHHHHH
Confidence 9999999887776432 222333322222 22333 244667776666554
No 321
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.22 E-value=3e+02 Score=21.82 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=31.1
Q ss_pred HHHHHhhcCCCCceEEEEeccCCC---CCHH----HHHHHHHHHHh--CCCcEEEEecCC
Q 044624 197 LCKNWLDRKPCRSVLYVSFGSQDT---IAVS----QMVQLAMALEA--SGKNFIWIVRPP 247 (358)
Q Consensus 197 ~~~~wld~~~~~~vvyvs~GS~~~---~~~~----~~~~~~~al~~--~~~~~lw~~~~~ 247 (358)
.+.+++...+ .+|++.+|+-.. .+.+ .+++++..+.+ .+.+++|..-.+
T Consensus 40 ~l~~~~~~~p--d~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p 97 (169)
T cd01828 40 RLDEDVALQP--KAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSILP 97 (169)
T ss_pred HHHHHhccCC--CEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCC
Confidence 3444553333 499999999653 3343 34567777777 678888875443
No 322
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=22.10 E-value=1.1e+02 Score=29.80 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=20.6
Q ss_pred CCcEEEECCCCccHHHHHHHhCCceEEE
Q 044624 108 KPLCIITDMFFGWCKEIAQEYGIFHAIF 135 (358)
Q Consensus 108 ~pd~vV~D~~~~~~~~~A~~lgiP~v~~ 135 (358)
+||++|.. .....+|+++|||++..
T Consensus 393 ~pDliig~---s~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 393 KADIMLSG---GRSQFIALKAGMPWLDI 417 (475)
T ss_pred CCCEEEec---CchhhhhhhcCCCEEEc
Confidence 89999997 44668899999999843
No 323
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=21.99 E-value=66 Score=32.14 Aligned_cols=39 Identities=8% Similarity=-0.188 Sum_probs=26.9
Q ss_pred CcEEEECCCCc---cHHHHHHHhCCceEEEcchhHHHHHHHh
Q 044624 109 PLCIITDMFFG---WCKEIAQEYGIFHAIFIEGGGFGFACYY 147 (358)
Q Consensus 109 pd~vV~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 147 (358)
-.-||+..+.+ .++...++..+++.+++++.++.+..+.
T Consensus 142 ~~~ViaHfHEWmaG~gll~lr~~~~~VaTvFTTHAT~lGR~l 183 (633)
T PF05693_consen 142 KPKVIAHFHEWMAGVGLLYLRKRKPDVATVFTTHATLLGRYL 183 (633)
T ss_dssp SEEEEEEEESGGGTTHHHHHHHTT-SCEEEEEESS-HHHHHH
T ss_pred CCcEEEEechHhHhHHHHHHhccCCCeeEEEEecccchhhHh
Confidence 35566665554 4567889999999999999888766553
No 324
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=21.76 E-value=77 Score=23.12 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=24.8
Q ss_pred eEeccccccchhhhhhhhccccceEEeccc-CCccccHHHHHHHHHHHh
Q 044624 277 INGWPLAAEQFYNSNLLGEEVGVCAEVARG-MNCAVLKEHIVVKIELVM 324 (358)
Q Consensus 277 ~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~-~~~~~~~~~l~~ai~~ll 324 (358)
++.||...|+..-= .-|.++.+. --...+.++|+++++++=
T Consensus 4 ~vlwp~YfDs~~sr-------s~GRrvpk~laV~~P~~~ei~~a~~~LG 45 (93)
T COG1400 4 IVLWPAYFDSDLSR-------SEGRRVPKELAVENPSLEEIAEALRELG 45 (93)
T ss_pred eEEeehhhcCccCh-------hhccccchhhcccCCCHHHHHHHHHHcC
Confidence 68899988876211 113333221 003577889999998873
No 325
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=21.59 E-value=3.2e+02 Score=21.81 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=19.7
Q ss_pred hhchHHHHHHHHHHhhhcCCCCCcEEEECCCCc
Q 044624 87 LSFKPHFKKLIIDLIDEQNGHKPLCIITDMFFG 119 (358)
Q Consensus 87 ~~~~~~l~~ll~~~~~~~~~~~pd~vV~D~~~~ 119 (358)
......+.++++.. +||.|+.+..++
T Consensus 45 ~~I~~~l~~~i~~~-------~Pd~vaiE~~~~ 70 (154)
T cd00529 45 KTIYDGLNEVIDQF-------QPDVVAIERVFF 70 (154)
T ss_pred HHHHHHHHHHHHHh-------CCCEEEEEEhhc
Confidence 34667778888877 899999988554
No 326
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=21.53 E-value=1.9e+02 Score=24.17 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=20.5
Q ss_pred EEEECCCC-ccHHHHHHHhCCceEEEcchh
Q 044624 111 CIITDMFF-GWCKEIAQEYGIFHAIFIEGG 139 (358)
Q Consensus 111 ~vV~D~~~-~~~~~~A~~lgiP~v~~~~~~ 139 (358)
++|-..+- +++.-+|+++|+|.|.+.|+-
T Consensus 62 ~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 62 VLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred EEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 44444433 356779999999999987753
No 327
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=21.43 E-value=2e+02 Score=24.15 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhhhcCCC--CCcEEEECCCCccHHHHHHHhCCceEEE
Q 044624 90 KPHFKKLIIDLIDEQNGH--KPLCIITDMFFGWCKEIAQEYGIFHAIF 135 (358)
Q Consensus 90 ~~~l~~ll~~~~~~~~~~--~pd~vV~D~~~~~~~~~A~~lgiP~v~~ 135 (358)
-..++++++...+...+. +.++||+.-....++.-|+..|||..++
T Consensus 17 GsNlqaLid~~r~~~l~~~a~VvlviSnk~~~~GL~rA~~~gIPt~vi 64 (206)
T KOG3076|consen 17 GSNLQALIDATRDGSLGPNADVVLVISNKKGVYGLERAADAGIPTLVI 64 (206)
T ss_pred chhHHHHHHhhcCCCcCCCceEEEEEeccccchhhhHHHHCCCCEEEe
Confidence 446677777654332221 4568888888888999999999998444
No 328
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=21.34 E-value=2.2e+02 Score=23.18 Aligned_cols=29 Identities=7% Similarity=0.165 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCc-chhhhhh
Q 044624 13 FLALAHHLESTKNYTIAFVNTHL-NIKKIKS 42 (358)
Q Consensus 13 ~l~La~~L~~~rGh~Vt~~t~~~-~~~~~~~ 42 (358)
|.+|+.+|++ +|.+|..++.+. ....+.+
T Consensus 118 F~~Lv~~lre-~G~~V~v~g~~~~ts~~L~~ 147 (160)
T TIGR00288 118 FLPVINKAKE-NGKETIVIGAEPGFSTALQN 147 (160)
T ss_pred HHHHHHHHHH-CCCEEEEEeCCCCChHHHHH
Confidence 6789999999 999999999664 3334444
No 329
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=21.24 E-value=3.3e+02 Score=21.88 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=24.4
Q ss_pred eEEEEeccCCCC----CH----HHHHHHHHHHHhCCCcEEEEec
Q 044624 210 VLYVSFGSQDTI----AV----SQMVQLAMALEASGKNFIWIVR 245 (358)
Q Consensus 210 vvyvs~GS~~~~----~~----~~~~~~~~al~~~~~~~lw~~~ 245 (358)
+|+|.+|+-... +. +.++.+++.+...+.+++|+--
T Consensus 70 ~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~~~ 113 (185)
T cd01832 70 LVTLLAGGNDILRPGTDPDTYRADLEEAVRRLRAAGARVVVFTI 113 (185)
T ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 899999996532 33 3445577777766778777643
No 330
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=21.09 E-value=1.4e+02 Score=23.23 Aligned_cols=25 Identities=8% Similarity=0.157 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCcch
Q 044624 12 PFLALAHHLESTKNYTIAFVNTHLNI 37 (358)
Q Consensus 12 P~l~La~~L~~~rGh~Vt~~t~~~~~ 37 (358)
..+...++|.+ +||+|+++|.....
T Consensus 28 ~~ie~L~~l~~-~G~~IiiaTGR~~~ 52 (126)
T TIGR01689 28 AVIEKLRHYKA-LGFEIVISSSRNMR 52 (126)
T ss_pred HHHHHHHHHHH-CCCEEEEECCCCch
Confidence 46667777789 99999999987654
No 331
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=21.02 E-value=1.1e+02 Score=31.56 Aligned_cols=33 Identities=21% Similarity=0.052 Sum_probs=27.7
Q ss_pred CCCCCcEEEECCCCcc--HHHHHHHhCCceEEEcch
Q 044624 105 NGHKPLCIITDMFFGW--CKEIAQEYGIFHAIFIEG 138 (358)
Q Consensus 105 ~~~~pd~vV~D~~~~~--~~~~A~~lgiP~v~~~~~ 138 (358)
+| -+|+||+|..+.. ...+|+++|.+.|.+++-
T Consensus 263 tG-~~D~~vvD~qCi~~~I~eiA~kyG~g~I~tt~r 297 (731)
T cd01916 263 SG-IADVVVVDEQCIRADILEEAQKLGIPVIATNDK 297 (731)
T ss_pred cC-CCcEEEEecccCcccHHHHHHHhCCCEEEechh
Confidence 35 6899999999875 467999999999998763
No 332
>PLN02828 formyltetrahydrofolate deformylase
Probab=20.99 E-value=2.1e+02 Score=25.54 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=37.1
Q ss_pred CCcccccCCcchhhhhhcCcceEeccccc-cchhhhhhhhccccceEEecccCCccccHHHHHHHHHHH
Q 044624 256 FRANDADGTQSALEALSHGVPINGWPLAA-EQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELV 323 (358)
Q Consensus 256 ~~~~wlgG~~s~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~l 323 (358)
..+.| .|.+....|+.+|+...++-+.. |.-.-+--+... --+.+.. .-|.++|.+.++++
T Consensus 179 lLP~f-~Ga~p~~~Ai~~Gvk~tG~TvH~V~~~lD~GpII~Q--~~v~V~~----~dt~~~L~~r~~~~ 240 (268)
T PLN02828 179 LLPSF-KGGNPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQ--MVERVSH----RDNLRSFVQKSENL 240 (268)
T ss_pred cCCCC-CCCcHHHHHHHcCCCeEEEEEEEEcCCCCCCCeeEE--EEEecCC----CCCHHHHHHHHHHH
Confidence 34566 88999999999999998876432 222222222111 1234443 56788888777665
No 333
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=20.89 E-value=1.1e+02 Score=29.32 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=21.6
Q ss_pred CCcEEEECCCCccHHHHHHHhCCceEEEc
Q 044624 108 KPLCIITDMFFGWCKEIAQEYGIFHAIFI 136 (358)
Q Consensus 108 ~pd~vV~D~~~~~~~~~A~~lgiP~v~~~ 136 (358)
+||++|.... ...+|+++|||.+.+.
T Consensus 355 ~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 355 EPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred CCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 8999998843 5568999999999864
No 334
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=20.85 E-value=2.2e+02 Score=23.29 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEECCCCcc---HHHHHHHhCCceEEEcc
Q 044624 91 PHFKKLIIDLIDEQNGHKPLCIITDMFFGW---CKEIAQEYGIFHAIFIE 137 (358)
Q Consensus 91 ~~l~~ll~~~~~~~~~~~pd~vV~D~~~~~---~~~~A~~lgiP~v~~~~ 137 (358)
..+.+++++. +||+|+.-.-..+ +..+|.++|.|++.-.+
T Consensus 81 ~~l~~~i~~~-------~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~ 123 (181)
T cd01985 81 KALAALIKKE-------KPDLILAGATSIGKQLAPRVAALLGVPQISDVT 123 (181)
T ss_pred HHHHHHHHHh-------CCCEEEECCcccccCHHHHHHHHhCCCcceeEE
Confidence 3445555655 7999999887664 56799999999887544
No 335
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=20.77 E-value=1.5e+02 Score=26.91 Aligned_cols=32 Identities=6% Similarity=0.150 Sum_probs=22.9
Q ss_pred HHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeEEE
Q 044624 15 ALAHHLESTKNYTIAFVNTHLNIKKIKSSLPQSSPIHFL 53 (358)
Q Consensus 15 ~La~~L~~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~ 53 (358)
-+|..|++ .||+|+++.... .+.+.. .++.+.
T Consensus 19 ~lA~~L~~-~g~~V~~~~r~~-~~~~~~-----~g~~~~ 50 (313)
T PRK06249 19 FYGAMLAR-AGFDVHFLLRSD-YEAVRE-----NGLQVD 50 (313)
T ss_pred HHHHHHHH-CCCeEEEEEeCC-HHHHHh-----CCeEEE
Confidence 47889999 999999998764 344444 455544
No 336
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.76 E-value=3.9e+02 Score=21.79 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=29.3
Q ss_pred HHHHHhhcCCCCceEEEEeccCCCC---C------------H----HHHHHHHHHHHhCCCcEEEEecC
Q 044624 197 LCKNWLDRKPCRSVLYVSFGSQDTI---A------------V----SQMVQLAMALEASGKNFIWIVRP 246 (358)
Q Consensus 197 ~~~~wld~~~~~~vvyvs~GS~~~~---~------------~----~~~~~~~~al~~~~~~~lw~~~~ 246 (358)
.+..++....+ -+|++++|+-... . . +.++.+++.+++.+.+++|+--+
T Consensus 50 ~~~~~l~~~~p-d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili~~p 117 (200)
T cd01829 50 KLKELIAEEKP-DVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWVGLP 117 (200)
T ss_pred HHHHHHhcCCC-CEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEEcCC
Confidence 34555555444 3899999996521 1 1 22345666666678888876443
No 337
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=20.74 E-value=1.2e+02 Score=22.39 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhhh
Q 044624 11 IPFLALAHHLESTKNYTIAFVNTHLNIKKI 40 (358)
Q Consensus 11 ~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~ 40 (358)
.|.+.|+++|.+ +|.+|.+.=+--.....
T Consensus 17 Sp~~~l~~~L~~-~g~~V~~~DP~v~~~~~ 45 (106)
T PF03720_consen 17 SPALELIEELKE-RGAEVSVYDPYVDEEEI 45 (106)
T ss_dssp -HHHHHHHHHHH-TT-EEEEE-TTSHHHHH
T ss_pred CHHHHHHHHHHH-CCCEEEEECCccChHHH
Confidence 689999999999 99999887654433333
No 338
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=20.71 E-value=3.9e+02 Score=24.05 Aligned_cols=46 Identities=13% Similarity=0.183 Sum_probs=31.3
Q ss_pred cCCcchhhhhhc----CcceEeccccccchhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 262 DGTQSALEALSH----GVPINGWPLAAEQFYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 262 gG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
||=||+++++.. ++|++++- .- .+|.- ..++.+++.+++.++++++
T Consensus 71 GGDGt~l~~~~~~~~~~~pilGIn--------~G------~lGFL------~~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 71 GGDGTMLGIGRQLAPYGVPLIGIN--------HG------RLGFI------TDIPLDDMQETLPPMLAGN 120 (291)
T ss_pred CCcHHHHHHHHHhcCCCCCEEEEc--------CC------Ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 999999999774 67777763 11 11221 2356788888888888765
No 339
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=20.71 E-value=2.3e+02 Score=26.93 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCCCCcccccCCcchhhh--h-------hcCcceEeccccccchh
Q 044624 223 VSQMVQLAMALEASGKNFIWIVRPPIGFDINSEFRANDADGTQSALEA--L-------SHGVPINGWPLAAEQFY 288 (358)
Q Consensus 223 ~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~wlgG~~s~~ea--l-------~~GvP~l~~P~~~DQ~~ 288 (358)
++.++.+++.|++.+...+.+++.+ +|..-| | -+|+|+|++|-.-|-..
T Consensus 98 ~~~~~~~~~~L~~~~Id~Li~IGGd-----------------gS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl 155 (403)
T PRK06555 98 ENPLKVAAERLAADGVDILHTIGGD-----------------DTNTTAADLAAYLAENGYDLTVVGLPKTIDNDV 155 (403)
T ss_pred hHHHHHHHHHHHHcCCCEEEEECCh-----------------hHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCC
Confidence 4567789999999999988888543 333222 2 13899999998776543
No 340
>PRK05920 aromatic acid decarboxylase; Validated
Probab=20.62 E-value=1.2e+02 Score=25.76 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCcchhhhh
Q 044624 10 VIPFLALAHHLESTKNYTIAFVNTHLNIKKIK 41 (358)
Q Consensus 10 ~~P~l~La~~L~~~rGh~Vt~~t~~~~~~~~~ 41 (358)
..=.+.|.+.|.+ .||+|+++.++.-.+.+.
T Consensus 16 a~ka~~lvr~L~~-~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 16 AIYGVRLLECLLA-ADYEVHLVISKAAQKVLA 46 (204)
T ss_pred HHHHHHHHHHHHH-CCCEEEEEEChhHHHHHH
Confidence 3446789999999 999999999987665554
No 341
>PF09884 DUF2111: Uncharacterized protein conserved in archaea (DUF2111); InterPro: IPR012029 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, members of PIRSF036667 from PIRSF possess a domain homologous to these proteins fused within a signal transduction sensor protein containing PAS/PAC and GAF domains. Therefore, it is possible that members of this family are involved in signal transduction (possibly as a sensor).
Probab=20.54 E-value=41 Score=23.77 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=15.1
Q ss_pred hhhhhhcCcceEecccccc
Q 044624 267 ALEALSHGVPINGWPLAAE 285 (358)
Q Consensus 267 ~~eal~~GvP~l~~P~~~D 285 (358)
-.++.|.|+|+++.|+..+
T Consensus 51 P~~G~Y~G~PViV~PI~~~ 69 (84)
T PF09884_consen 51 PIEGPYKGVPVIVAPIKDE 69 (84)
T ss_pred cCCcccCCeeEEEEEEEcC
Confidence 3456789999999998654
No 342
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=20.47 E-value=80 Score=25.80 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=19.2
Q ss_pred hhhhhhhhccccceEEecccCCccccHHHHHHHHHHHhcCC
Q 044624 287 FYNSNLLGEEVGVCAEVARGMNCAVLKEHIVVKIELVMNET 327 (358)
Q Consensus 287 ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ll~~~ 327 (358)
...+.+=.+. |||+.+ |+|++.++|.++++..
T Consensus 102 ~d~~~Fe~~c-GVGV~V--------T~E~I~~~V~~~i~~~ 133 (164)
T PF04558_consen 102 IDVAEFEKAC-GVGVVV--------TPEQIEAAVEKYIEEN 133 (164)
T ss_dssp --HHHHHHTT-TTT------------HHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHc-CCCeEE--------CHHHHHHHHHHHHHHh
Confidence 3334444444 888766 6899999999999754
No 343
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=20.20 E-value=2.3e+02 Score=23.86 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=21.0
Q ss_pred CcEEEECCCCccHHHHHHHhCCceEEEc
Q 044624 109 PLCIITDMFFGWCKEIAQEYGIFHAIFI 136 (358)
Q Consensus 109 pd~vV~D~~~~~~~~~A~~lgiP~v~~~ 136 (358)
.-+||+|.-...+...|++.|||+..+.
T Consensus 31 I~~vvs~~~~~~~~~~a~~~gIp~~~~~ 58 (200)
T PRK05647 31 IVAVISDRPDAYGLERAEAAGIPTFVLD 58 (200)
T ss_pred EEEEEecCccchHHHHHHHcCCCEEEEC
Confidence 4566788655557789999999987754
Done!