BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044625
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 222 bits (565), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 154/457 (33%), Positives = 234/457 (51%), Gaps = 54/457 (11%)
Query: 2 EVEILSKECIKPSSPTAHHLETHKLSLLDLYLPPAYIPLVLYYPMNQQHSSANIIDDHII 61
++E +S+E I PSSPT L+ +K+S LD L +IP +L+YP N +D ++
Sbjct: 4 QMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYP--------NPLDSNLD 55
Query: 62 STRL-QLLKQALSETLSLFYPLAGKIKDLHSIDCNDEGIYFIEARAKSPLDEFL-NLPSI 119
+ Q LKQ+LS+ L+ FYPLAG+I S+DCND G+ F+EAR ++ L + + N+ +
Sbjct: 56 PAQTSQHLKQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVEL 115
Query: 120 SLIKEFLPDPDDAKWRSIPTPGDYVASVQVTTFSCGGMTIGAYVSHMIGDGTAFSLFLKS 179
+ ++LP + I D +V+++ F CGG IG +SH I D + + FL +
Sbjct: 116 EKLDQYLPSAAYPGGK-IEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNA 174
Query: 180 WAAATARKSYNEESEAALLLSPKFD-ASLSFPQNDAYPRQACSTSIRSNLPIKFGRCVCR 238
W AT R E+E L P FD A+ FP D P + V +
Sbjct: 175 W-TATCRG----ETEIVL---PNFDLAARHFPPVDNTPSPEL---------VPDENVVMK 217
Query: 239 RFLFDASAIANLKAKA-KGSTVQNPTRVEAVTTLLGKCIMAASKTQAXXXXXXXXXXKPF 297
RF+FD I L+A+A S +N +RV+ V + K ++ ++ + F
Sbjct: 218 RFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAK-------YGAKNKF 270
Query: 298 ALIHAVNLRGRATPPFSENYMGNFIWMASALCKTEEEPELQGLVCQLREAIAKLNGDFVN 357
++ AVNLR R PP MGN + A E + + L+ LR ++ K D
Sbjct: 271 VVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDDH-- 328
Query: 358 SLQGDEGLLNFLEALKYERETYTRAADRIAYSSWCNFGFYEIDFGWGKPIWASVTGPPES 417
+ LL + L YE E + ++++SWC GFY++DFGWGKP+ A T P+
Sbjct: 329 ----NHELLKGMTCL-YELE----PQELLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKR 379
Query: 418 PATAILNAILLMDTNMGNGIEAWVYLHEDTMAILQVD 454
NA LLMDT G+G+EAW+ + ED MA+L V+
Sbjct: 380 ------NAALLMDTRSGDGVEAWLPMAEDEMAMLPVE 410
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 118/471 (25%), Positives = 199/471 (42%), Gaps = 62/471 (13%)
Query: 1 MEVEILSKECIKPSSPT-AHHLETHKLSLLDLYLPPAYIPLVLYYPMNQQHSSANIIDDH 59
M++E+ ++P+ T +L S +DL +P + P V +Y + S+N D
Sbjct: 6 MKIEVKESTMVRPAQETPGRNLWN---SNVDLVVPNFHTPSVYFY---RPTGSSNFFD-- 57
Query: 60 IISTRLQLLKQALSETLSLFYPLAGKIKDLHS----IDCNDEGIYFIEARAKSPLDEFLN 115
++LK ALS L FYP+AG++K I+CN EG+ F+EA + +D+F +
Sbjct: 58 -----AKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGD 112
Query: 116 LPSISLIKEFLPDPDDAKWRSIPTPGDYVASV-QVTTFSCGGMTIGAYVSHMIGDGTAFS 174
++ +P D ++ S Y V QVT F CGG+++G + H DG +
Sbjct: 113 FAPTLELRRLIPAVDYSQGIS-----SYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGL 167
Query: 175 LFLKSWAAATARKSYNEESEAALLLSPKFDASL---------SFPQNDAYPRQACSTSIR 225
F+ SW+ + + L P D +L F + P A + S +
Sbjct: 168 HFINSWS--------DMARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQ 219
Query: 226 SNLPIKFGRCVCRRFLFDASAIANLKAKAK--GSTVQNPTRVEAVTTLLGKCIMAASKTQ 283
+ F I+ LKAK+K G+T+ + E + + +C A +
Sbjct: 220 TAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISY-SSYEMLAGHVWRCACKARGLE 278
Query: 284 AXXXXXXXXXXKPFALIHAVNLRGRATPPFSENYMGNFIWMAS--ALCKTEEEPELQGLV 341
L A + R R P Y GN I+ A+ A+ E +
Sbjct: 279 VDQGTK---------LYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAA 329
Query: 342 CQLREAIAKLNGDFVNSLQGDEGLLNFLEALKYERETYTRAADRIAYSSWCNFGFYEIDF 401
++ +A+A+++ D++ S L L+AL R +T + +SW ++ DF
Sbjct: 330 SKIHDALARMDNDYLRSALDYLELQPDLKALV--RGAHTFKXPNLGITSWVRLPIHDADF 387
Query: 402 GWGKPIWASVTGPPESPATAILNAILLMDTNMGNGIEAWVYLHEDTMAILQ 452
GWG+PI+ P A L+ IL TN G+ + + L + M + Q
Sbjct: 388 GWGRPIFMG----PGGIAYEGLSFILPSPTNDGS-MSVAISLQGEHMKLFQ 433
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 118/471 (25%), Positives = 198/471 (42%), Gaps = 62/471 (13%)
Query: 1 MEVEILSKECIKPSSPT-AHHLETHKLSLLDLYLPPAYIPLVLYYPMNQQHSSANIIDDH 59
M++E+ ++P+ T +L S +DL +P + P V +Y + S+N D
Sbjct: 3 MKIEVKESTMVRPAQETPGRNLWN---SNVDLVVPNFHTPSVYFY---RPTGSSNFFD-- 54
Query: 60 IISTRLQLLKQALSETLSLFYPLAGKIKDLHS----IDCNDEGIYFIEARAKSPLDEFLN 115
++LK ALS L FYP+AG++K I+CN EG+ F+EA + +D+F +
Sbjct: 55 -----AKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGD 109
Query: 116 LPSISLIKEFLPDPDDAKWRSIPTPGDYVASV-QVTTFSCGGMTIGAYVSHMIGDGTAFS 174
++ +P D ++ S Y V QVT F CGG+++G + H DG +
Sbjct: 110 FAPTLELRRLIPAVDYSQGIS-----SYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGL 164
Query: 175 LFLKSWAAATARKSYNEESEAALLLSPKFDASL---------SFPQNDAYPRQACSTSIR 225
F+ SW+ + + L P D +L F + P A S +
Sbjct: 165 HFINSWS--------DMARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQ 216
Query: 226 SNLPIKFGRCVCRRFLFDASAIANLKAKAK--GSTVQNPTRVEAVTTLLGKCIMAASKTQ 283
+ F I+ LKAK+K G+T+ + E + + +C A +
Sbjct: 217 TAKSDSVPETAVSIFKLTREQISALKAKSKEDGNTISY-SSYEMLAGHVWRCACKARGLE 275
Query: 284 AXXXXXXXXXXKPFALIHAVNLRGRATPPFSENYMGNFIWMAS--ALCKTEEEPELQGLV 341
L A + R R P Y GN I+ A+ A+ E +
Sbjct: 276 VDQGT---------KLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAA 326
Query: 342 CQLREAIAKLNGDFVNSLQGDEGLLNFLEALKYERETYTRAADRIAYSSWCNFGFYEIDF 401
++ +A+A+++ D++ S L L+AL R +T + +SW ++ DF
Sbjct: 327 SKIHDALARMDNDYLRSALDYLELQPDLKALV--RGAHTFKCPNLGITSWVRLPIHDADF 384
Query: 402 GWGKPIWASVTGPPESPATAILNAILLMDTNMGNGIEAWVYLHEDTMAILQ 452
GWG+PI+ P A L+ IL TN G+ + + L + M + Q
Sbjct: 385 GWGRPIFMG----PGGIAYEGLSFILPSPTNDGS-MSVAISLQGEHMKLFQ 430
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 117/471 (24%), Positives = 198/471 (42%), Gaps = 62/471 (13%)
Query: 1 MEVEILSKECIKPSSPT-AHHLETHKLSLLDLYLPPAYIPLVLYYPMNQQHSSANIIDDH 59
M++E+ ++P+ T +L S +DL +P + P V +Y + S+N D
Sbjct: 6 MKIEVKESTMVRPAQETPGRNLWN---SNVDLVVPNFHTPSVYFY---RPTGSSNFFD-- 57
Query: 60 IISTRLQLLKQALSETLSLFYPLAGKIKDLHS----IDCNDEGIYFIEARAKSPLDEFLN 115
++LK ALS L FYP+AG++K I+CN EG+ F+EA + +D+F +
Sbjct: 58 -----AKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGD 112
Query: 116 LPSISLIKEFLPDPDDAKWRSIPTPGDYVASV-QVTTFSCGGMTIGAYVSHMIGDGTAFS 174
++ +P D ++ S Y V QVT F GG+++G + H DG +
Sbjct: 113 FAPTLELRRLIPAVDYSQGIS-----SYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGL 167
Query: 175 LFLKSWAAATARKSYNEESEAALLLSPKFDASL---------SFPQNDAYPRQACSTSIR 225
F+ SW+ + + L P D +L F + P A + S +
Sbjct: 168 HFINSWS--------DMARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQ 219
Query: 226 SNLPIKFGRCVCRRFLFDASAIANLKAKAK--GSTVQNPTRVEAVTTLLGKCIMAASKTQ 283
+ F I+ LKAK+K G+T+ + E + + +C A +
Sbjct: 220 TAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISY-SSYEMLAGHVWRCACKARGLE 278
Query: 284 AXXXXXXXXXXKPFALIHAVNLRGRATPPFSENYMGNFIWMAS--ALCKTEEEPELQGLV 341
L A + R R P Y GN I+ A+ A+ E +
Sbjct: 279 VDQGTK---------LYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAA 329
Query: 342 CQLREAIAKLNGDFVNSLQGDEGLLNFLEALKYERETYTRAADRIAYSSWCNFGFYEIDF 401
++ +A+A+++ D++ S L L+AL R +T + +SW ++ DF
Sbjct: 330 SKIHDALARMDNDYLRSALDYLELQPDLKALV--RGAHTFKXPNLGITSWVRLPIHDADF 387
Query: 402 GWGKPIWASVTGPPESPATAILNAILLMDTNMGNGIEAWVYLHEDTMAILQ 452
GWG+PI+ P A L+ IL TN G+ + + L + M + Q
Sbjct: 388 GWGRPIFMG----PGGIAYEGLSFILPSPTNDGS-MSVAISLQGEHMKLFQ 433
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 145/365 (39%), Gaps = 53/365 (14%)
Query: 68 LKQALSETLSLFYPLAGKIKDLHSIDCNDEGIYFIEARAKSPLDEFLNLPSISLIKEFLP 127
+K +LS TL FYP GK+ ++ I ++E + + NL L P
Sbjct: 65 IKHSLSITLKHFYPFVGKLV-VYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNH-P 122
Query: 128 DPDDAKWRSIPTPGDY----------VASVQVTTFSCGGMTIGAYVSHMIGDGTAFSLFL 177
D + +P G+ + SVQVT F G+ IG H +GD + FL
Sbjct: 123 RNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFL 182
Query: 178 KSWAAATARKSYNEESEAALLLSPKFDASLSFPQ-NDAYPRQACSTSIRSNL-------P 229
K+W + AR N+ES A P +D + +P ++AY ++A S + P
Sbjct: 183 KAW-TSIARSGNNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYVTQSLAGP 241
Query: 230 IKFGRCVCRRFLFDASAIANLKAKAKGSTVQNPTRVEAVTTLLGKCIMAASKTQAXXXXX 289
R F+ + I LK + Q PT +E V++ C S
Sbjct: 242 SDKLRAT---FILTRAVINQLKDRV---LAQLPT-LEYVSSFTVACAYIWSCIAKSRNDK 294
Query: 290 XXXXXKPFALIHAVNLRGRATPPFSENYMGNFIWMASALCKTEEEPELQGLVCQLREAIA 349
P ++ R R PP Y GN + +A+ KT +G + A
Sbjct: 295 LQLFGFP------IDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFI-----TAA 343
Query: 350 KLNGDFVNSLQGD--EGLLNFLEALKYERETYTRAADRIAYS--SWCN----FGFYEIDF 401
KL G+ ++ D +G+ LK + E++ + +W + FY++DF
Sbjct: 344 KLIGENLHKTLTDYKDGV------LKDDMESFNDLVSEGMPTTMTWVSGTPKLRFYDMDF 397
Query: 402 GWGKP 406
GWGKP
Sbjct: 398 GWGKP 402
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 142/365 (38%), Gaps = 53/365 (14%)
Query: 68 LKQALSETLSLFYPLAGKIKDLHSIDCNDEGIYFIEARAKSPLDEFLNLPSISLIKEFLP 127
+K +LS TL FYP GK+ ++ I ++E + + NL L P
Sbjct: 65 IKHSLSITLKHFYPFVGKLV-VYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNH-P 122
Query: 128 DPDDAKWRSIPTPGDYVA----------SVQVTTFSCGGMTIGAYVSHMIGDGTAFSLFL 177
D + +P G+ SVQVT F G+ IG H +GD + FL
Sbjct: 123 RNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFL 182
Query: 178 KSWAAATARKSYNEESEAALLLSPKFDASLSFPQ-NDAYPRQACSTSIRSNL-------P 229
K+W + AR N+ES A P +D + +P ++AY ++A S + P
Sbjct: 183 KAW-TSIARSGNNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYVTQSLAGP 241
Query: 230 IKFGRCVCRRFLFDASAIANLKAKAKGSTVQNPTRVEAVTTLLGKCIMAASKTQAXXXXX 289
R F+ + I LK + Q PT +E V++ C S
Sbjct: 242 SDKLRAT---FILTRAVINQLKDRV---LAQLPT-LEYVSSFTVACAYIWSCIAKSRNDK 294
Query: 290 XXXXXKPFALIHAVNLRGRATPPFSENYMGNFIWMASALCKTEEEPELQGLVCQLREAIA 349
P ++ R R PP Y GN + +A+ KT +G + A
Sbjct: 295 LQLFGFP------IDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFI-----TAA 343
Query: 350 KLNGDFVNSLQGD--EGLLNFLEALKYERETYTRAADR--IAYSSWCN----FGFYEIDF 401
KL G+ ++ D +G+ LK + E++ +W + FY+ DF
Sbjct: 344 KLIGENLHKTLTDYKDGV------LKDDXESFNDLVSEGXPTTXTWVSGTPKLRFYDXDF 397
Query: 402 GWGKP 406
GWGKP
Sbjct: 398 GWGKP 402
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 137/375 (36%), Gaps = 54/375 (14%)
Query: 60 IISTRLQLLKQALSETLSLFYPLAGKIK---------DLHSIDCNDEGIYFIEARAKSPL 110
+ T + LK +LS TL + PLAG + +L + N + F E+
Sbjct: 52 FVQTIIPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXDFNY 111
Query: 111 DEFLNLPSISLIKEFLP---DPDDAKWRSIPTPGDYVA---SVQVTTFSCGGMTIGAYVS 164
+ + F+P +P DA PG +A ++QVT F G++IG
Sbjct: 112 LIGYHPRNTKDFYHFVPQLAEPKDA-------PGVQLAPVLAIQVTLFPNHGISIGFTNH 164
Query: 165 HMIGDGTAFSLFLKSWAAATARKSYNEESEAALLLSPKFDASLSFPQNDA---------- 214
H+ GDG F+++WA K +E A P +D S+ N
Sbjct: 165 HVAGDGATIVKFVRAWALLN--KFGGDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKK 222
Query: 215 YPRQACSTSIRSNLPIKFGRCVCRRFLFDASAIANLKAKAKGSTVQNPTRVEAVTTLLGK 274
Y + + + G + R D + NL + + + T +
Sbjct: 223 YKHXXKXSDVVTPPDKVRGTFIITR--HDIGKLKNL-VLTRRPKLTHVTSFTVTCAYVWT 279
Query: 275 CIMAASKTQAXXXXXXXXXXKPFALIHAVNLRGRATPPFSENYMGNFIWMASALCKTEEE 334
CI+ K++A F A + R + PP +Y GN + A + +
Sbjct: 280 CII---KSEAATGEEIDENGXEF-FGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDL 335
Query: 335 PELQGLVCQLR---EAIAKLNGDFVNSLQGDEGLLNFLEALKYERETYTRAADRIAYSSW 391
+G + EAI K D +E +L+ +Y++ R+ ++ +
Sbjct: 336 AGKEGFTIAVELIGEAIRKRXKD-------EEWILSGSWFKEYDKVDAKRS---LSVAGS 385
Query: 392 CNFGFYEIDFGWGKP 406
Y DFGWG+P
Sbjct: 386 PKLDLYAADFGWGRP 400
>pdb|2ZBA|A Chain A, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|B Chain B, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|C Chain C, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|D Chain D, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
Length = 459
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 28/178 (15%)
Query: 296 PFALIHAVNLRGRATPPFSENYMG---NFIWMASALCKTEEEPELQGLVCQLREAIAKLN 352
P AV+ RG S Y G N + S + + EP L +LR ++LN
Sbjct: 294 PTEFCRAVDXRGPXG--VSSTYPGLLQNXTYHDSTVAEIANEP-LGATASRLR---SELN 347
Query: 353 GDFVNSLQGDEGLLNFLEALKYERETYTRAAD-----RIAYSSWCNFGFYEIDFGWGKPI 407
D + + + L + L ++ + + AD I SSW G +E DFG+G
Sbjct: 348 SDRLR--RRTQALATYXHGLP-DKSSVSLTADANPSSSIXLSSWAKVGCWEYDFGFG--- 401
Query: 408 WASVTGPPES---PATAILNAILLMDTNMGNG-IEAWVYLHEDTMAILQVDQQLLQYA 461
G PES P ++ +G A + L ++ L+ D++ +YA
Sbjct: 402 ----LGKPESVRRPRFEPFESLXYFXPKKPDGEFTASISLRDEDXERLKADEEWTKYA 455
>pdb|2PL5|A Chain A, Crystal Structure Of Homoserine O-acetyltransferase From
Leptospira Interrogans
Length = 366
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 58 DHIISTRLQLLKQALSETLSLF----------YPLAGKIKDLHSIDCNDEGIYFIEARAK 107
DH + + L ALS F YP A + + S++ D+ ++++E ++
Sbjct: 282 DHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVELQSG 341
Query: 108 SPLDEFL--NLPSISLIKEFLPDPD 130
D FL N I ++K FL +P+
Sbjct: 342 EGHDSFLLKNPKQIEILKGFLENPN 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,881,164
Number of Sequences: 62578
Number of extensions: 571545
Number of successful extensions: 1460
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1431
Number of HSP's gapped (non-prelim): 12
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)