BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044626
(429 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
Length = 451
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/424 (51%), Positives = 295/424 (69%), Gaps = 11/424 (2%)
Query: 13 SRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSG 72
+RLYPLTK+R++ A+PL ANYRL+D VSNC+NSNI+KIY LTQFNS SLN HLSRA++
Sbjct: 32 TRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS 91
Query: 73 ILRG--KDGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMD 130
+ G +GFVEV+AA QS E+ DWFQG ADA+R+ LW+ EE+ V E+LIL G HLY+MD
Sbjct: 92 NMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMD 151
Query: 131 YQRLIEAHRNNKADITIVALNAIRDKHPGFGLLRVNPVNQVIEFSMKSERETITXXXXXX 190
Y++ I+AHR ADIT+ AL + FGL++++ ++IEF+ K + E +
Sbjct: 152 YEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDT 211
Query: 191 XXXXXXXXXGN----FPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPAAISIGMKVEA 246
SMGIY+I++D M LL++ P A D GSEVIP A S+GM+V+A
Sbjct: 212 TILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQA 271
Query: 247 YLFDGYWEDMRSIEAFYHANMECIKRSNMRYNFYDRDCPVYTMPRCLPPTMIREAVIRDS 306
YL+DGYWED+ +IEAFY+AN+ K+ ++FYDR P+YT PR LPP+ + +A + DS
Sbjct: 272 YLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDS 331
Query: 307 VVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHK-AI 365
V+G+GC+I CKI +V+G+R+ I +GA+IEDS++MGAD+Y+ D K + K ++
Sbjct: 332 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDAD----RKLLAAKGSV 387
Query: 366 PVGIGEDTQIKKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIAD 425
P+GIG++ IK+A+IDKNARIG NV IINKD VQE RE +GY I GIV +I A I
Sbjct: 388 PIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPS 447
Query: 426 GSII 429
G II
Sbjct: 448 GIII 451
>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From
Agrobacterium Tumefaciens
Length = 420
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 183/398 (45%), Gaps = 43/398 (10%)
Query: 4 AVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLN 63
A V G SRL LT RR++ A+ R++D +SN +NS I +I TQ+ + SL
Sbjct: 15 AYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLI 74
Query: 64 LHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPG 123
HL R + ++ +++ A Q + + W++G ADA+ + + ++E Y +IL G
Sbjct: 75 RHLQRGWDFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYXVILAG 134
Query: 124 HHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGFGLLRVNPVNQVIEFSMKSERETI 183
H+YK DY+ ++ H ++ AD+TI L R + GFG+ VN +++I+F K
Sbjct: 135 DHIYKXDYEYXLQQHVDSGADVTIGCLEVPRXEATGFGVXHVNEKDEIIDFIEKP----- 189
Query: 184 TXXXXXXXXXXXXXXXGN----FPSMGIYLINRDTMSRLLKEYLPEAT---DLGSEVIPA 236
GN S GIY+ + + ++ + T D G ++IP
Sbjct: 190 ---------ADPPGIPGNEGFALASXGIYVFHTKFLXEAVRRDAADPTSSRDFGKDIIPY 240
Query: 237 AISIGMKVEAYLFDG----------YWEDMRSIEAFYHANMECIKRSNMRYNFYDRDCPV 286
+ G V D YW D+ +I+A++ AN++ + + YD+ P+
Sbjct: 241 IVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANID-LTDVVPDLDIYDKSWPI 299
Query: 287 YTMPRCLPPTMI------REAVIRDSVVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSV 340
+T PP R SVV CII+ + +++ R + +E++V
Sbjct: 300 WTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAV 359
Query: 341 IMGADFYQQGEDIQSSGKCINHK-AIPVG--IGEDTQI 375
++ + + G Q S I+H IP G +GED ++
Sbjct: 360 VLPS--VKIGRHAQLSNVVIDHGVVIPEGLIVGEDPEL 395
>pdb|3R1W|A Chain A, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
pdb|3R1W|B Chain B, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
pdb|3R1W|C Chain C, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
Length = 189
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 305 DSVVGDGCIINRCKIKGTV-IGMRTRIGDGAVIEDSVIMGA 344
D +G +++ C I V IGM++ I DGA++ED VI+ A
Sbjct: 93 DVTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIVEDEVIVAA 133
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 28/133 (21%)
Query: 302 VIRDSVVGDGC-----IINRCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSS 356
+I D +GD C + R + IG RT + DG+V+ + +D+
Sbjct: 34 IIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLH--ITHASDY---------- 81
Query: 357 GKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVV 416
N P+ IG+D I + IG VLI K + +G I E V+
Sbjct: 82 ----NPGGYPLIIGDDVTIGHQAMLHGCTIGNRVLIGMKSMIMDG-------AIVEDEVI 130
Query: 417 IIHGAEIADGSII 429
+ GA ++ G ++
Sbjct: 131 VAAGATVSPGKVL 143
>pdb|3R3R|A Chain A, Structure Of The Yrda Ferripyochelin Binding Protein From
Salmonella Enterica
Length = 187
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 295 PTMIREAVIRDSVVGDGCIINRCKIKGTV-IGMRTRIGDGAVIEDSVIMGA 344
P +I E D VG +++ C I V +GM + + DGA+IED V++GA
Sbjct: 83 PLIIGE----DVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIEDDVMIGA 129
>pdb|3TIO|A Chain A, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|B Chain B, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|C Chain C, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|D Chain D, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|E Chain E, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|F Chain F, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIS|A Chain A, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
pdb|3TIS|B Chain B, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
pdb|3TIS|C Chain C, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
Length = 183
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 305 DSVVGDGCIINRCKIKGTV-IGMRTRIGDGAVIEDSVIMGA 344
D VG +++ C I V +GM + + DGA++ED V++GA
Sbjct: 85 DVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGA 125
>pdb|3BPX|A Chain A, Crystal Structure Of Marr
pdb|3BPX|B Chain B, Crystal Structure Of Marr
Length = 148
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 220 KEYLPEATDLGSEVIPAAISIGMKVEAYLFDGYWEDMRSI 259
+ Y+ E T G E+IP + + + E LF + ED R +
Sbjct: 90 RRYILEVTRRGEEIIPLILKVEERWEDLLFRDFTEDERKL 129
>pdb|3BPV|A Chain A, Crystal Structure Of Marr
Length = 138
Score = 29.3 bits (64), Expect = 4.6, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 209 LINRDTMSRLLKEYLPEATDLGSEVIPAAISIGMKVEAYLFDGYWEDMRSI 259
I R+ + Y+ E T G E+IP + + + E LF + ED R +
Sbjct: 72 FIEREQDPENRRRYILEVTRRGEEIIPLILKVEERWEDLLFRDFTEDERKL 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,269,960
Number of Sequences: 62578
Number of extensions: 498173
Number of successful extensions: 1170
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1152
Number of HSP's gapped (non-prelim): 17
length of query: 429
length of database: 14,973,337
effective HSP length: 102
effective length of query: 327
effective length of database: 8,590,381
effective search space: 2809054587
effective search space used: 2809054587
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)