Query 044626
Match_columns 429
No_of_seqs 191 out of 2553
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 05:09:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0448 GlgC ADP-glucose pyrop 100.0 3.8E-65 8.3E-70 478.0 33.2 383 1-428 5-392 (393)
2 PLN02241 glucose-1-phosphate a 100.0 1.8E-60 4E-65 476.5 42.8 424 1-429 3-436 (436)
3 PRK02862 glgC glucose-1-phosph 100.0 1.6E-58 3.4E-63 461.2 42.4 423 1-429 3-429 (429)
4 PRK05293 glgC glucose-1-phosph 100.0 1E-56 2.2E-61 443.9 39.3 353 1-395 3-360 (380)
5 KOG1322 GDP-mannose pyrophosph 100.0 3.2E-56 7E-61 402.6 30.9 359 1-423 9-370 (371)
6 PRK00844 glgC glucose-1-phosph 100.0 2.5E-53 5.4E-58 422.0 40.2 381 1-422 5-406 (407)
7 PRK00725 glgC glucose-1-phosph 100.0 5.9E-53 1.3E-57 420.6 39.8 384 1-423 15-419 (425)
8 COG1208 GCD1 Nucleoside-diphos 100.0 5.3E-53 1.1E-57 409.7 36.8 353 1-429 1-357 (358)
9 TIGR02091 glgC glucose-1-phosp 100.0 6.8E-50 1.5E-54 392.7 36.2 355 4-393 1-360 (361)
10 TIGR02092 glgD glucose-1-phosp 100.0 6E-50 1.3E-54 394.0 34.1 349 1-394 2-355 (369)
11 COG1207 GlmU N-acetylglucosami 100.0 5.2E-49 1.1E-53 368.6 31.6 389 1-429 2-430 (460)
12 TIGR01208 rmlA_long glucose-1- 100.0 3.6E-47 7.9E-52 372.0 35.2 293 3-337 1-298 (353)
13 PRK14355 glmU bifunctional N-a 100.0 2.9E-45 6.3E-50 370.5 35.8 392 1-429 3-430 (459)
14 PRK14352 glmU bifunctional N-a 100.0 7.9E-45 1.7E-49 369.2 36.4 389 1-429 4-432 (482)
15 KOG1460 GDP-mannose pyrophosph 100.0 1.9E-45 4.1E-50 327.2 22.2 329 1-396 2-359 (407)
16 PRK14358 glmU bifunctional N-a 100.0 3.4E-44 7.4E-49 363.1 33.2 386 1-429 7-432 (481)
17 TIGR01173 glmU UDP-N-acetylglu 100.0 3.3E-43 7.2E-48 355.7 33.1 383 2-429 1-423 (451)
18 PRK14359 glmU bifunctional N-a 100.0 1.6E-42 3.4E-47 348.6 36.4 375 1-429 2-400 (430)
19 PRK14356 glmU bifunctional N-a 100.0 1.4E-42 3.1E-47 351.2 35.6 386 1-429 5-431 (456)
20 PRK09451 glmU bifunctional N-a 100.0 1.1E-42 2.4E-47 351.6 32.5 383 1-429 5-427 (456)
21 PRK14353 glmU bifunctional N-a 100.0 2.9E-42 6.3E-47 348.0 35.3 382 1-429 5-413 (446)
22 KOG1461 Translation initiation 100.0 5.4E-42 1.2E-46 333.6 29.6 380 1-429 24-423 (673)
23 PRK14354 glmU bifunctional N-a 100.0 7.6E-41 1.6E-45 338.9 35.0 385 1-429 2-426 (458)
24 KOG1462 Translation initiation 100.0 5.5E-42 1.2E-46 316.0 21.6 344 1-393 9-401 (433)
25 COG1209 RfbA dTDP-glucose pyro 100.0 2E-41 4.4E-46 301.5 21.1 236 2-273 1-239 (286)
26 PRK14360 glmU bifunctional N-a 100.0 7.6E-40 1.6E-44 330.9 34.9 383 1-429 1-423 (450)
27 PRK14357 glmU bifunctional N-a 100.0 5.6E-40 1.2E-44 331.6 31.8 373 2-429 1-416 (448)
28 PF00483 NTP_transferase: Nucl 100.0 4.7E-38 1E-42 292.9 22.3 241 3-271 1-247 (248)
29 TIGR01105 galF UTP-glucose-1-p 100.0 3.1E-37 6.8E-42 291.6 24.8 243 1-270 3-277 (297)
30 cd06428 M1P_guanylylT_A_like_N 100.0 7.2E-37 1.6E-41 286.2 24.4 235 4-269 1-257 (257)
31 cd06425 M1P_guanylylT_B_like_N 100.0 2E-36 4.3E-41 279.2 24.7 232 2-270 1-233 (233)
32 PRK15480 glucose-1-phosphate t 100.0 5.6E-36 1.2E-40 282.4 25.0 234 1-270 3-241 (292)
33 PRK10122 GalU regulator GalF; 100.0 9.1E-36 2E-40 282.4 24.7 245 1-272 3-280 (297)
34 cd02538 G1P_TT_short G1P_TT_sh 100.0 5.9E-35 1.3E-39 270.6 24.5 232 2-270 1-238 (240)
35 TIGR01207 rmlA glucose-1-phosp 100.0 7.4E-35 1.6E-39 274.5 23.0 231 3-270 1-237 (286)
36 cd04189 G1P_TT_long G1P_TT_lon 100.0 4.3E-34 9.4E-39 264.2 24.3 234 2-272 1-236 (236)
37 cd02541 UGPase_prokaryotic Pro 100.0 3E-34 6.6E-39 270.1 23.3 242 2-271 1-266 (267)
38 TIGR02623 G1P_cyt_trans glucos 100.0 4.7E-34 1E-38 266.1 23.8 234 3-273 1-248 (254)
39 PRK13389 UTP--glucose-1-phosph 100.0 1.7E-33 3.7E-38 267.3 24.3 239 2-270 9-280 (302)
40 TIGR01099 galU UTP-glucose-1-p 100.0 1.4E-33 3E-38 264.7 22.1 237 2-265 1-260 (260)
41 cd06422 NTP_transferase_like_1 100.0 2.9E-33 6.3E-38 256.1 20.2 219 3-265 1-221 (221)
42 cd02524 G1P_cytidylyltransfera 100.0 1.5E-32 3.2E-37 256.4 23.9 238 4-271 1-247 (253)
43 cd06426 NTP_transferase_like_2 100.0 2.8E-32 6.2E-37 249.3 22.9 220 4-266 1-220 (220)
44 cd06915 NTP_transferase_WcbM_l 100.0 2.9E-32 6.2E-37 249.6 21.8 223 4-266 1-223 (223)
45 cd04181 NTP_transferase NTP_tr 100.0 6.5E-32 1.4E-36 246.3 22.1 217 4-257 1-217 (217)
46 COG1210 GalU UDP-glucose pyrop 100.0 5.2E-31 1.1E-35 235.1 17.9 245 2-273 5-273 (291)
47 cd02508 ADP_Glucose_PP ADP-glu 100.0 8.8E-30 1.9E-34 229.2 19.9 198 4-256 1-200 (200)
48 cd04197 eIF-2B_epsilon_N The N 100.0 4.5E-30 9.7E-35 234.1 16.7 202 2-215 1-217 (217)
49 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 4.8E-29 1E-33 229.7 21.8 220 4-262 1-230 (231)
50 cd02523 PC_cytidylyltransferas 100.0 3.7E-29 8.1E-34 230.1 19.0 223 4-266 1-229 (229)
51 cd02507 eIF-2B_gamma_N_like Th 99.9 3.5E-27 7.5E-32 214.7 15.3 203 2-215 1-216 (216)
52 cd02540 GT2_GlmU_N_bac N-termi 99.9 1.8E-25 4E-30 205.5 21.4 222 4-262 1-229 (229)
53 cd04198 eIF-2B_gamma_N The N-t 99.9 2E-26 4.4E-31 209.4 13.5 200 2-215 1-214 (214)
54 cd02509 GDP-M1P_Guanylyltransf 99.9 1.1E-25 2.3E-30 211.8 17.2 233 2-261 1-273 (274)
55 PRK05450 3-deoxy-manno-octulos 99.9 3E-23 6.5E-28 192.8 22.3 234 1-269 2-244 (245)
56 COG1213 Predicted sugar nucleo 99.9 7.3E-24 1.6E-28 186.2 15.6 221 2-271 4-230 (239)
57 TIGR01479 GMP_PMI mannose-1-ph 99.9 3.1E-23 6.8E-28 208.6 21.4 238 2-265 1-280 (468)
58 cd02517 CMP-KDO-Synthetase CMP 99.9 6.8E-23 1.5E-27 189.7 21.4 228 1-267 1-238 (239)
59 PRK13368 3-deoxy-manno-octulos 99.9 3.4E-21 7.5E-26 178.2 20.6 226 1-268 2-237 (238)
60 COG4750 LicC CTP:phosphocholin 99.9 1E-20 2.2E-25 159.2 13.8 220 2-271 1-227 (231)
61 COG0836 {ManC} Mannose-1-phosp 99.8 2.9E-19 6.2E-24 163.7 17.1 240 1-265 1-281 (333)
62 PRK15460 cpsB mannose-1-phosph 99.8 4.4E-19 9.6E-24 176.8 16.4 239 1-265 5-289 (478)
63 PLN02917 CMP-KDO synthetase 99.8 4E-18 8.6E-23 161.2 21.9 235 1-272 47-290 (293)
64 COG1044 LpxD UDP-3-O-[3-hydrox 99.8 8.8E-19 1.9E-23 162.2 16.2 173 256-429 78-287 (338)
65 TIGR00453 ispD 2-C-methyl-D-er 99.7 1.2E-16 2.7E-21 145.6 16.8 211 4-268 2-216 (217)
66 PRK00155 ispD 2-C-methyl-D-ery 99.7 3.8E-16 8.2E-21 143.4 17.3 217 1-270 3-223 (227)
67 cd02516 CDP-ME_synthetase CDP- 99.7 7.5E-16 1.6E-20 140.5 16.5 213 3-264 2-217 (218)
68 TIGR00466 kdsB 3-deoxy-D-manno 99.7 3.7E-15 8.1E-20 137.3 20.6 229 3-262 1-237 (238)
69 PRK05289 UDP-N-acetylglucosami 99.7 6.7E-16 1.5E-20 144.0 13.8 148 275-429 6-174 (262)
70 TIGR01853 lipid_A_lpxD UDP-3-O 99.7 2E-15 4.2E-20 144.7 16.6 62 368-429 219-286 (324)
71 COG1043 LpxA Acyl-[acyl carrie 99.7 7.2E-16 1.6E-20 135.0 12.3 145 275-429 7-175 (260)
72 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.7 4.9E-16 1.1E-20 141.5 11.3 145 231-413 31-190 (231)
73 PRK09382 ispDF bifunctional 2- 99.7 6.2E-15 1.4E-19 143.6 19.0 207 1-271 5-214 (378)
74 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.7 2.3E-15 4.9E-20 140.2 14.7 147 276-429 4-171 (254)
75 cd05636 LbH_G1P_TT_C_like Puta 99.6 3.4E-15 7.4E-20 129.6 13.6 122 281-429 15-162 (163)
76 TIGR00454 conserved hypothetic 99.6 2.3E-15 5E-20 132.7 12.4 122 2-148 1-124 (183)
77 PRK12461 UDP-N-acetylglucosami 99.6 4.6E-15 1E-19 137.2 14.8 147 275-429 3-170 (255)
78 PRK13385 2-C-methyl-D-erythrit 99.6 1.9E-14 4.1E-19 132.3 17.1 219 2-271 3-225 (230)
79 TIGR01852 lipid_A_lpxA acyl-[a 99.6 4.4E-15 9.6E-20 138.3 12.9 63 367-429 102-170 (254)
80 PRK00892 lpxD UDP-3-O-[3-hydro 99.6 2.3E-14 5E-19 139.2 17.0 63 367-429 226-294 (343)
81 PF12804 NTP_transf_3: MobA-li 99.6 8.3E-15 1.8E-19 126.8 12.3 119 4-148 1-121 (160)
82 cd03353 LbH_GlmU_C N-acetyl-gl 99.6 1.7E-14 3.6E-19 129.0 14.1 147 277-429 21-177 (193)
83 TIGR03310 matur_ygfJ molybdenu 99.6 3.9E-14 8.5E-19 126.0 16.1 120 4-146 2-123 (188)
84 cd02513 CMP-NeuAc_Synthase CMP 99.6 2.1E-13 4.6E-18 124.7 20.1 213 1-267 1-221 (223)
85 PLN02728 2-C-methyl-D-erythrit 99.5 2.3E-13 5.1E-18 125.7 17.4 218 2-271 25-246 (252)
86 COG2068 Uncharacterized MobA-r 99.5 5E-13 1.1E-17 115.8 17.1 118 2-141 6-125 (199)
87 COG1212 KdsB CMP-2-keto-3-deox 99.5 8.6E-13 1.9E-17 115.0 17.3 233 2-271 4-244 (247)
88 cd04182 GT_2_like_f GT_2_like_ 99.5 2.2E-13 4.7E-18 120.8 13.2 121 2-145 1-123 (186)
89 PF01128 IspD: 2-C-methyl-D-er 99.5 1.1E-12 2.4E-17 118.3 17.7 215 2-269 1-219 (221)
90 TIGR02287 PaaY phenylacetic ac 99.5 2.4E-13 5.1E-18 120.3 12.3 112 284-428 9-130 (192)
91 COG0663 PaaY Carbonic anhydras 99.5 2.8E-13 6E-18 114.9 11.7 111 286-428 14-133 (176)
92 TIGR01852 lipid_A_lpxA acyl-[a 99.5 3.3E-13 7.2E-18 125.7 13.3 59 367-428 120-179 (254)
93 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 2.9E-13 6.3E-18 125.7 12.4 146 277-429 123-293 (338)
94 cd04646 LbH_Dynactin_6 Dynacti 99.5 4.7E-13 1E-17 115.9 13.0 120 287-428 3-127 (164)
95 cd04745 LbH_paaY_like paaY-lik 99.5 5.6E-13 1.2E-17 114.6 12.7 96 304-428 17-122 (155)
96 cd03352 LbH_LpxD UDP-3-O-acyl- 99.5 9.5E-13 2.1E-17 118.8 14.6 146 278-429 8-183 (205)
97 COG2266 GTP:adenosylcobinamide 99.5 6.1E-13 1.3E-17 112.0 11.6 110 2-139 1-112 (177)
98 PRK00317 mobA molybdopterin-gu 99.5 2.5E-12 5.3E-17 115.0 15.5 113 1-141 3-117 (193)
99 PLN02296 carbonate dehydratase 99.4 7.6E-13 1.6E-17 122.7 12.0 115 282-428 51-180 (269)
100 cd03353 LbH_GlmU_C N-acetyl-gl 99.4 1.2E-12 2.6E-17 117.0 12.6 66 275-344 7-73 (193)
101 COG1211 IspD 4-diphosphocytidy 99.4 1.4E-11 3.1E-16 110.5 17.8 217 2-270 5-227 (230)
102 PLN02472 uncharacterized prote 99.4 2.3E-12 4.9E-17 118.0 13.0 113 284-428 60-187 (246)
103 PRK13627 carnitine operon prot 99.4 1.7E-12 3.7E-17 115.2 11.8 97 304-428 27-132 (196)
104 PRK02726 molybdopterin-guanine 99.4 5.9E-12 1.3E-16 113.0 15.1 112 1-140 7-120 (200)
105 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.4 2.3E-12 5E-17 120.0 12.3 141 281-428 21-180 (254)
106 PRK12461 UDP-N-acetylglucosami 99.4 2.7E-12 5.9E-17 118.7 12.5 47 367-413 120-167 (255)
107 cd04651 LbH_G1P_AT_C Glucose-1 99.4 4.7E-12 1E-16 101.0 11.2 98 299-422 6-103 (104)
108 TIGR03584 PseF pseudaminic aci 99.4 9.3E-11 2E-15 106.8 20.9 212 4-268 2-219 (222)
109 cd05636 LbH_G1P_TT_C_like Puta 99.4 5.8E-12 1.3E-16 109.3 12.5 108 278-413 18-159 (163)
110 cd04650 LbH_FBP Ferripyochelin 99.4 8.9E-12 1.9E-16 106.8 13.2 96 304-427 17-121 (154)
111 TIGR03202 pucB xanthine dehydr 99.4 7.4E-12 1.6E-16 111.6 13.2 123 2-145 1-128 (190)
112 PRK05289 UDP-N-acetylglucosami 99.4 5.5E-12 1.2E-16 117.7 12.6 11 416-426 143-153 (262)
113 cd02503 MobA MobA catalyzes th 99.4 4.5E-12 9.8E-17 112.0 11.3 113 2-145 1-115 (181)
114 TIGR01173 glmU UDP-N-acetylglu 99.4 3.1E-12 6.7E-17 129.6 11.4 106 301-418 309-424 (451)
115 cd04645 LbH_gamma_CA_like Gamm 99.4 1.2E-11 2.7E-16 106.0 13.0 109 287-427 3-120 (153)
116 COG1207 GlmU N-acetylglucosami 99.3 2.9E-12 6.4E-17 121.7 9.1 127 279-428 257-411 (460)
117 cd04646 LbH_Dynactin_6 Dynacti 99.3 1.5E-11 3.3E-16 106.5 12.3 115 276-412 4-130 (164)
118 cd00710 LbH_gamma_CA Gamma car 99.3 2.2E-11 4.8E-16 106.0 13.3 27 367-393 71-98 (167)
119 TIGR03308 phn_thr-fam phosphon 99.3 7.1E-12 1.5E-16 112.2 10.3 61 277-338 8-70 (204)
120 TIGR00965 dapD 2,3,4,5-tetrahy 99.3 1.7E-11 3.7E-16 112.0 11.4 106 281-403 104-211 (269)
121 cd03350 LbH_THP_succinylT 2,3, 99.3 2.9E-11 6.2E-16 102.0 11.9 108 277-407 7-117 (139)
122 PRK00892 lpxD UDP-3-O-[3-hydro 99.3 2.4E-11 5.1E-16 118.2 12.6 45 384-428 226-275 (343)
123 PRK11830 dapD 2,3,4,5-tetrahyd 99.3 1.3E-11 2.9E-16 113.8 10.2 60 281-344 107-167 (272)
124 TIGR02665 molyb_mobA molybdopt 99.3 1.9E-11 4.2E-16 108.4 10.8 118 2-145 1-120 (186)
125 PRK14357 glmU bifunctional N-a 99.3 2.5E-11 5.3E-16 122.9 12.7 129 279-419 263-418 (448)
126 PRK14356 glmU bifunctional N-a 99.3 2.2E-11 4.8E-16 123.5 12.0 87 284-392 264-354 (456)
127 cd04652 LbH_eIF2B_gamma_C eIF- 99.3 3.5E-11 7.7E-16 91.4 10.1 63 308-392 2-65 (81)
128 TIGR01853 lipid_A_lpxD UDP-3-O 99.3 3.6E-11 7.9E-16 115.3 12.3 171 253-429 67-268 (324)
129 cd00710 LbH_gamma_CA Gamma car 99.3 1E-10 2.2E-15 101.9 13.8 97 276-393 7-115 (167)
130 cd02518 GT2_SpsF SpsF is a gly 99.3 3.5E-10 7.6E-15 104.2 18.0 115 4-146 2-121 (233)
131 PRK09451 glmU bifunctional N-a 99.3 3.3E-11 7.2E-16 122.2 11.8 115 292-428 268-408 (456)
132 PRK00560 molybdopterin-guanine 99.3 1.9E-10 4.2E-15 102.8 15.2 102 1-134 8-112 (196)
133 cd04745 LbH_paaY_like paaY-lik 99.2 1.2E-10 2.6E-15 100.1 13.2 96 276-393 5-112 (155)
134 PRK14352 glmU bifunctional N-a 99.2 4E-11 8.6E-16 122.3 11.8 59 285-344 267-328 (482)
135 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 5.1E-11 1.1E-15 90.5 9.5 76 293-390 3-80 (81)
136 cd03352 LbH_LpxD UDP-3-O-acyl- 99.2 9.8E-11 2.1E-15 105.7 13.0 149 280-429 4-165 (205)
137 cd03356 LbH_G1P_AT_C_like Left 99.2 6.6E-11 1.4E-15 89.4 10.0 64 308-393 2-66 (79)
138 cd03359 LbH_Dynactin_5 Dynacti 99.2 8.2E-11 1.8E-15 101.7 11.9 109 305-423 21-134 (161)
139 TIGR03308 phn_thr-fam phosphon 99.2 6.4E-11 1.4E-15 106.1 11.4 42 300-341 14-56 (204)
140 TIGR02287 PaaY phenylacetic ac 99.2 1.3E-10 2.8E-15 102.9 13.1 97 275-393 12-120 (192)
141 COG1043 LpxA Acyl-[acyl carrie 99.2 7.7E-11 1.7E-15 103.7 10.9 127 285-427 5-149 (260)
142 TIGR00965 dapD 2,3,4,5-tetrahy 99.2 1.1E-10 2.4E-15 106.7 12.4 100 289-413 100-209 (269)
143 TIGR03570 NeuD_NnaD sugar O-ac 99.2 2.4E-10 5.2E-15 102.6 14.5 52 367-427 142-194 (201)
144 PRK14353 glmU bifunctional N-a 99.2 9.4E-11 2E-15 118.6 13.1 129 279-419 276-415 (446)
145 KOG1461 Translation initiation 99.2 1.7E-11 3.6E-16 121.3 7.2 83 321-427 333-415 (673)
146 cd05787 LbH_eIF2B_epsilon eIF- 99.2 7.9E-11 1.7E-15 89.0 9.4 64 308-393 2-66 (79)
147 COG0663 PaaY Carbonic anhydras 99.2 1.3E-10 2.9E-15 98.7 11.6 99 275-395 15-125 (176)
148 cd03360 LbH_AT_putative Putati 99.2 2.3E-10 5E-15 102.0 13.8 41 367-413 139-180 (197)
149 cd03350 LbH_THP_succinylT 2,3, 99.2 1.8E-10 3.9E-15 97.1 12.2 99 305-428 13-122 (139)
150 cd03358 LbH_WxcM_N_like WcxM-l 99.2 8.3E-11 1.8E-15 96.4 9.5 80 305-413 16-97 (119)
151 PLN02296 carbonate dehydratase 99.2 2.6E-10 5.6E-15 105.9 13.4 96 276-393 57-170 (269)
152 PRK14354 glmU bifunctional N-a 99.2 1.1E-10 2.4E-15 118.5 11.9 44 301-344 312-357 (458)
153 cd04650 LbH_FBP Ferripyochelin 99.2 4E-10 8.7E-15 96.6 13.2 97 275-393 4-112 (154)
154 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.2 9E-11 1.9E-15 107.1 9.4 100 277-395 86-190 (231)
155 PRK13627 carnitine operon prot 99.2 1.8E-10 3.9E-15 102.3 10.6 61 367-429 56-121 (196)
156 PRK14489 putative bifunctional 99.2 2.2E-10 4.7E-15 112.3 11.4 119 1-145 5-125 (366)
157 PRK14358 glmU bifunctional N-a 99.2 3.9E-10 8.4E-15 114.8 13.6 57 288-344 269-328 (481)
158 PRK14355 glmU bifunctional N-a 99.1 2.1E-10 4.6E-15 116.4 11.2 70 304-395 267-338 (459)
159 cd05824 LbH_M1P_guanylylT_C Ma 99.1 4.3E-10 9.2E-15 85.2 10.1 63 305-393 5-67 (80)
160 cd03356 LbH_G1P_AT_C_like Left 99.1 3.4E-10 7.4E-15 85.5 9.4 74 293-388 3-79 (79)
161 PRK14500 putative bifunctional 99.1 1.4E-09 3.1E-14 104.9 15.7 108 2-138 161-270 (346)
162 PRK14490 putative bifunctional 99.1 1.9E-09 4.2E-14 105.8 16.8 107 2-137 175-283 (369)
163 PLN02472 uncharacterized prote 99.1 7.5E-10 1.6E-14 101.5 12.7 94 278-393 66-177 (246)
164 PRK14360 glmU bifunctional N-a 99.1 3.5E-10 7.6E-15 114.6 11.6 66 305-393 280-347 (450)
165 PRK11830 dapD 2,3,4,5-tetrahyd 99.1 7E-10 1.5E-14 102.5 12.2 105 289-419 103-217 (272)
166 cd04651 LbH_G1P_AT_C Glucose-1 99.1 4.6E-10 1E-14 89.5 9.6 59 312-393 2-61 (104)
167 PRK14359 glmU bifunctional N-a 99.1 4.9E-10 1.1E-14 112.9 11.2 104 290-419 283-402 (430)
168 cd04649 LbH_THP_succinylT_puta 99.1 1.1E-09 2.5E-14 90.5 11.1 53 280-337 10-63 (147)
169 COG0746 MobA Molybdopterin-gua 99.1 8.5E-10 1.8E-14 97.6 10.7 111 1-142 4-116 (192)
170 TIGR03570 NeuD_NnaD sugar O-ac 99.1 8.9E-10 1.9E-14 98.8 11.0 91 252-342 62-156 (201)
171 cd04645 LbH_gamma_CA_like Gamm 99.0 2.9E-09 6.4E-14 91.3 12.0 96 276-393 4-111 (153)
172 cd05787 LbH_eIF2B_epsilon eIF- 99.0 2E-09 4.3E-14 81.2 9.2 74 293-388 3-79 (79)
173 cd03358 LbH_WxcM_N_like WcxM-l 99.0 1.6E-09 3.5E-14 88.7 9.2 26 367-392 74-100 (119)
174 cd05824 LbH_M1P_guanylylT_C Ma 99.0 4.4E-09 9.5E-14 79.6 9.2 63 304-388 16-80 (80)
175 cd03359 LbH_Dynactin_5 Dynacti 98.9 6.4E-09 1.4E-13 89.9 10.5 86 285-393 23-123 (161)
176 cd05635 LbH_unknown Uncharacte 98.9 6.2E-09 1.3E-13 82.3 9.4 65 305-393 29-95 (101)
177 KOG1462 Translation initiation 98.9 2.2E-09 4.7E-14 100.8 7.7 89 283-393 328-418 (433)
178 cd04193 UDPGlcNAc_PPase UDPGlc 98.9 7.2E-08 1.6E-12 92.3 18.0 204 1-221 15-257 (323)
179 cd04180 UGPase_euk_like Eukary 98.9 2.5E-10 5.5E-15 106.4 0.9 201 3-220 2-241 (266)
180 cd03360 LbH_AT_putative Putati 98.9 1E-08 2.2E-13 91.3 11.3 27 367-393 133-160 (197)
181 PRK10502 putative acyl transfe 98.9 6.1E-09 1.3E-13 91.9 9.6 53 284-338 52-108 (182)
182 PLN02694 serine O-acetyltransf 98.9 4.9E-09 1.1E-13 96.9 9.1 24 321-344 180-203 (294)
183 PRK05293 glgC glucose-1-phosph 98.9 5.4E-09 1.2E-13 103.5 9.9 93 277-393 282-380 (380)
184 KOG3121 Dynactin, subunit p25 98.9 2.8E-09 6.1E-14 85.8 6.0 103 304-429 38-140 (184)
185 cd04649 LbH_THP_succinylT_puta 98.9 2E-08 4.4E-13 83.2 11.3 37 304-344 12-52 (147)
186 PRK11132 cysE serine acetyltra 98.9 9E-09 2E-13 95.2 10.2 37 305-344 147-184 (273)
187 TIGR03536 DapD_gpp 2,3,4,5-tet 98.9 1.6E-08 3.4E-13 93.5 10.4 16 321-336 224-239 (341)
188 TIGR01172 cysE serine O-acetyl 98.8 1E-08 2.2E-13 88.6 8.2 17 377-393 113-129 (162)
189 cd05635 LbH_unknown Uncharacte 98.8 5.1E-08 1.1E-12 77.1 11.0 65 305-392 11-77 (101)
190 PTZ00339 UDP-N-acetylglucosami 98.8 4.4E-07 9.5E-12 90.8 19.6 203 1-220 106-351 (482)
191 TIGR03536 DapD_gpp 2,3,4,5-tet 98.8 5.5E-08 1.2E-12 90.0 10.8 12 97-108 27-38 (341)
192 PRK09527 lacA galactoside O-ac 98.8 5.2E-08 1.1E-12 86.8 10.0 51 285-338 57-112 (203)
193 COG2171 DapD Tetrahydrodipicol 98.8 3.9E-08 8.5E-13 88.6 9.2 107 279-402 110-219 (271)
194 COG2171 DapD Tetrahydrodipicol 98.8 3.8E-08 8.2E-13 88.7 9.0 101 289-421 108-219 (271)
195 cd04647 LbH_MAT_like Maltose O 98.7 5E-08 1.1E-12 78.4 8.7 34 306-339 2-39 (109)
196 PRK09527 lacA galactoside O-ac 98.7 1E-07 2.2E-12 84.9 11.2 16 321-336 75-90 (203)
197 PRK09677 putative lipopolysacc 98.7 1.1E-07 2.5E-12 84.5 11.4 54 286-339 46-103 (192)
198 TIGR03535 DapD_actino 2,3,4,5- 98.7 1.1E-07 2.4E-12 87.5 11.4 14 415-428 242-255 (319)
199 COG1083 NeuA CMP-N-acetylneura 98.7 6.5E-07 1.4E-11 78.1 15.4 217 3-272 5-225 (228)
200 cd03357 LbH_MAT_GAT Maltose O- 98.7 8.6E-08 1.9E-12 83.6 10.0 48 289-339 48-100 (169)
201 PLN02357 serine acetyltransfer 98.7 6.8E-08 1.5E-12 92.0 9.7 27 367-393 285-312 (360)
202 PRK10502 putative acyl transfe 98.7 1.5E-07 3.2E-12 83.1 10.8 33 306-338 52-88 (182)
203 COG1045 CysE Serine acetyltran 98.7 3.3E-08 7.2E-13 85.1 6.4 27 367-393 126-153 (194)
204 cd00208 LbetaH Left-handed par 98.7 1.1E-07 2.4E-12 71.1 8.5 34 307-340 2-37 (78)
205 COG1208 GCD1 Nucleoside-diphos 98.7 8.3E-08 1.8E-12 93.7 9.8 81 281-393 259-340 (358)
206 COG1045 CysE Serine acetyltran 98.6 8.1E-08 1.7E-12 82.8 7.5 29 379-413 121-149 (194)
207 TIGR01208 rmlA_long glucose-1- 98.6 1.4E-07 3E-12 92.5 10.2 67 304-393 270-338 (353)
208 cd03357 LbH_MAT_GAT Maltose O- 98.6 3.7E-07 8E-12 79.6 11.7 10 307-316 84-93 (169)
209 KOG4042 Dynactin subunit p27/W 98.6 8.6E-08 1.9E-12 77.9 6.4 49 290-338 9-64 (190)
210 PRK09677 putative lipopolysacc 98.6 2.2E-07 4.8E-12 82.6 9.5 51 291-344 31-90 (192)
211 PRK11132 cysE serine acetyltra 98.6 1.5E-07 3.3E-12 87.1 8.6 27 367-393 200-227 (273)
212 PRK10092 maltose O-acetyltrans 98.6 2.9E-07 6.3E-12 80.9 10.0 47 289-338 59-110 (183)
213 TIGR02091 glgC glucose-1-phosp 98.6 1.7E-07 3.7E-12 92.2 9.5 81 307-424 279-360 (361)
214 cd00208 LbetaH Left-handed par 98.6 2.4E-07 5.2E-12 69.3 8.1 22 323-344 2-23 (78)
215 PLN02739 serine acetyltransfer 98.6 1.8E-07 4E-12 88.3 8.9 26 367-392 264-290 (355)
216 TIGR02092 glgD glucose-1-phosp 98.6 1.9E-07 4.1E-12 92.1 9.2 60 310-393 277-337 (369)
217 cd03354 LbH_SAT Serine acetylt 98.6 3.9E-07 8.5E-12 72.2 9.3 18 376-393 53-70 (101)
218 PRK00725 glgC glucose-1-phosph 98.6 1.6E-07 3.5E-12 94.2 8.5 53 318-393 324-376 (425)
219 PRK10191 putative acyl transfe 98.5 7.2E-07 1.6E-11 75.2 10.5 27 367-393 99-126 (146)
220 PLN02694 serine O-acetyltransf 98.5 3.2E-07 7E-12 85.0 9.0 27 367-393 219-246 (294)
221 PRK10191 putative acyl transfe 98.5 3.7E-07 7.9E-12 77.0 8.6 26 368-393 94-120 (146)
222 PLN02241 glucose-1-phosphate a 98.5 4.2E-07 9E-12 91.6 10.0 82 290-393 316-418 (436)
223 cd05825 LbH_wcaF_like wcaF-lik 98.5 1.3E-06 2.8E-11 70.0 10.8 34 305-338 3-40 (107)
224 PRK02862 glgC glucose-1-phosph 98.5 4.1E-07 8.9E-12 91.4 9.5 99 307-429 294-423 (429)
225 PLN02739 serine acetyltransfer 98.5 3.7E-07 8E-12 86.3 8.1 36 306-344 212-248 (355)
226 PLN02474 UTP--glucose-1-phosph 98.5 2.4E-05 5.3E-10 77.8 21.2 198 1-221 79-310 (469)
227 TIGR03535 DapD_actino 2,3,4,5- 98.5 7E-07 1.5E-11 82.4 9.4 28 378-413 226-253 (319)
228 PF02348 CTP_transf_3: Cytidyl 98.4 2.4E-06 5.3E-11 77.6 12.1 116 4-144 2-120 (217)
229 PLN02357 serine acetyltransfer 98.4 8.7E-07 1.9E-11 84.5 9.3 36 307-344 234-269 (360)
230 PRK10092 maltose O-acetyltrans 98.4 1.2E-06 2.5E-11 77.1 9.2 26 367-392 130-156 (183)
231 cd03354 LbH_SAT Serine acetylt 98.4 1E-06 2.2E-11 69.8 7.8 24 321-344 22-45 (101)
232 TIGR01172 cysE serine O-acetyl 98.4 1.1E-06 2.3E-11 76.0 8.5 27 367-393 120-147 (162)
233 cd05825 LbH_wcaF_like wcaF-lik 98.4 1.4E-06 3E-11 69.8 8.4 11 321-331 29-39 (107)
234 PRK00844 glgC glucose-1-phosph 98.4 9E-07 1.9E-11 88.4 8.8 66 318-413 312-377 (407)
235 KOG1460 GDP-mannose pyrophosph 98.4 1.2E-06 2.5E-11 79.9 7.8 94 277-395 294-389 (407)
236 cd04647 LbH_MAT_like Maltose O 98.4 2.2E-06 4.7E-11 68.8 8.8 33 286-320 4-37 (109)
237 cd03349 LbH_XAT Xenobiotic acy 98.3 3.2E-06 6.9E-11 71.5 9.5 19 321-339 21-39 (145)
238 COG0448 GlgC ADP-glucose pyrop 98.2 4.1E-06 9E-11 80.2 8.7 61 308-392 282-343 (393)
239 COG1861 SpsF Spore coat polysa 98.2 2.3E-05 5.1E-10 68.8 11.2 115 3-146 4-125 (241)
240 cd00897 UGPase_euk Eukaryotic 98.1 0.00015 3.4E-09 68.4 17.1 198 1-221 3-234 (300)
241 KOG4750 Serine O-acetyltransfe 98.0 1.1E-05 2.4E-10 70.6 6.7 79 307-417 156-234 (269)
242 TIGR02353 NRPS_term_dom non-ri 98.0 1.2E-05 2.7E-10 85.1 8.3 34 305-338 112-148 (695)
243 PF07959 Fucokinase: L-fucokin 98.0 4.1E-05 9E-10 76.1 10.9 94 116-221 54-159 (414)
244 COG0110 WbbJ Acetyltransferase 98.0 2.1E-05 4.5E-10 69.9 7.9 36 304-339 66-105 (190)
245 TIGR02353 NRPS_term_dom non-ri 97.9 3.6E-05 7.9E-10 81.6 8.4 90 305-428 597-689 (695)
246 PLN02435 probable UDP-N-acetyl 97.9 0.00061 1.3E-08 68.4 16.2 204 1-220 116-364 (493)
247 KOG3121 Dynactin, subunit p25 97.9 3E-05 6.5E-10 62.8 5.5 87 304-412 53-148 (184)
248 KOG1322 GDP-mannose pyrophosph 97.8 1.9E-05 4.1E-10 73.3 4.8 88 288-395 245-334 (371)
249 cd03349 LbH_XAT Xenobiotic acy 97.8 8E-05 1.7E-09 63.0 8.1 18 376-393 72-89 (145)
250 PRK13412 fkp bifunctional fuco 97.8 0.00016 3.4E-09 78.0 11.5 198 117-340 154-373 (974)
251 KOG4042 Dynactin subunit p27/W 97.8 3.6E-05 7.8E-10 62.9 4.6 18 304-321 46-64 (190)
252 PF01704 UDPGP: UTP--glucose-1 97.8 0.0018 3.9E-08 64.3 17.4 200 1-221 56-289 (420)
253 cd06424 UGGPase UGGPase cataly 97.7 0.0011 2.5E-08 62.9 15.2 207 3-221 2-253 (315)
254 COG4284 UDP-glucose pyrophosph 97.6 0.0038 8.2E-08 61.5 16.1 170 1-180 105-305 (472)
255 COG4801 Predicted acyltransfer 97.5 0.00046 9.9E-09 60.9 8.6 75 317-413 29-104 (277)
256 PRK00576 molybdopterin-guanine 97.5 0.00068 1.5E-08 59.5 10.0 97 22-141 3-103 (178)
257 COG4801 Predicted acyltransfer 97.5 0.0003 6.5E-09 62.1 6.7 67 306-393 34-102 (277)
258 KOG4750 Serine O-acetyltransfe 97.4 0.0004 8.6E-09 61.1 6.5 77 329-429 150-233 (269)
259 PLN02830 UDP-sugar pyrophospho 97.3 0.024 5.2E-07 58.9 19.7 209 1-221 128-384 (615)
260 PF00132 Hexapep: Bacterial tr 97.3 0.00029 6.3E-09 44.0 3.4 32 305-336 1-34 (36)
261 PF14602 Hexapep_2: Hexapeptid 97.2 0.00051 1.1E-08 42.3 3.8 30 306-336 2-32 (34)
262 PF00132 Hexapep: Bacterial tr 97.1 0.0007 1.5E-08 42.3 3.7 16 378-393 2-17 (36)
263 COG0110 WbbJ Acetyltransferase 97.0 0.0028 6E-08 56.2 7.5 34 310-343 66-103 (190)
264 KOG2638 UDP-glucose pyrophosph 96.8 0.2 4.3E-06 48.6 18.9 205 2-222 104-336 (498)
265 PF14602 Hexapep_2: Hexapeptid 96.4 0.0077 1.7E-07 37.0 4.2 13 380-392 4-16 (34)
266 TIGR03552 F420_cofC 2-phospho- 95.2 0.089 1.9E-06 46.7 8.1 86 32-139 30-117 (195)
267 cd00761 Glyco_tranf_GTA_type G 94.5 0.55 1.2E-05 38.5 10.8 98 27-139 3-103 (156)
268 PF00535 Glycos_transf_2: Glyc 92.2 1.9 4E-05 36.1 10.5 109 26-149 3-114 (169)
269 COG1920 Predicted nucleotidylt 91.0 3.8 8.3E-05 35.8 10.6 112 2-147 1-118 (210)
270 PF07959 Fucokinase: L-fucokin 88.6 0.84 1.8E-05 45.7 5.7 44 300-343 279-323 (414)
271 cd04186 GT_2_like_c Subfamily 88.0 9.5 0.00021 31.7 11.3 98 27-142 3-103 (166)
272 PLN02726 dolichyl-phosphate be 86.9 1.5 3.2E-05 40.3 5.9 48 97-147 79-127 (243)
273 KOG2388 UDP-N-acetylglucosamin 84.9 0.85 1.8E-05 45.3 3.3 70 2-76 98-182 (477)
274 cd06434 GT2_HAS Hyaluronan syn 84.9 13 0.00029 33.3 11.2 97 26-139 5-103 (235)
275 cd04188 DPG_synthase DPG_synth 84.0 10 0.00023 33.5 9.9 48 97-147 68-116 (211)
276 cd06423 CESA_like CESA_like is 84.0 14 0.00031 30.6 10.4 102 26-141 2-106 (180)
277 cd04179 DPM_DPG-synthase_like 82.2 13 0.00029 31.7 9.7 106 27-147 3-113 (185)
278 KOG2978 Dolichol-phosphate man 81.9 25 0.00054 30.8 10.5 100 34-149 19-124 (238)
279 cd02525 Succinoglycan_BP_ExoA 81.5 15 0.00033 33.1 10.2 104 26-145 5-113 (249)
280 cd06427 CESA_like_2 CESA_like_ 81.5 22 0.00047 32.3 11.2 109 26-148 6-119 (241)
281 cd06439 CESA_like_1 CESA_like_ 80.3 33 0.00072 31.1 12.1 107 17-140 23-136 (251)
282 cd06442 DPM1_like DPM1_like re 79.2 25 0.00055 31.1 10.7 107 26-147 2-112 (224)
283 cd04195 GT2_AmsE_like GT2_AmsE 78.7 28 0.00061 30.2 10.7 100 26-141 3-108 (201)
284 PF04519 Bactofilin: Polymer-f 75.9 9.4 0.0002 29.7 6.0 12 328-339 37-48 (101)
285 cd06433 GT_2_WfgS_like WfgS an 73.2 44 0.00095 28.6 10.4 97 27-141 4-103 (202)
286 PRK10073 putative glycosyl tra 72.5 45 0.00097 32.2 11.0 104 25-147 10-119 (328)
287 cd02510 pp-GalNAc-T pp-GalNAc- 71.1 50 0.0011 31.1 10.9 105 26-143 3-113 (299)
288 PRK14583 hmsR N-glycosyltransf 68.8 40 0.00086 34.1 10.1 102 25-141 79-183 (444)
289 cd04185 GT_2_like_b Subfamily 68.7 68 0.0015 27.8 10.6 100 27-139 3-105 (202)
290 PRK11204 N-glycosyltransferase 67.7 45 0.00098 33.2 10.2 102 25-141 58-162 (420)
291 TIGR03469 HonB hopene-associat 66.9 49 0.0011 32.7 10.1 113 25-145 44-165 (384)
292 cd04192 GT_2_like_e Subfamily 66.3 65 0.0014 28.4 10.2 105 26-144 2-113 (229)
293 cd04196 GT_2_like_d Subfamily 66.2 61 0.0013 28.2 9.9 101 26-140 3-106 (214)
294 TIGR01556 rhamnosyltran L-rham 64.8 89 0.0019 29.0 11.1 98 34-148 8-108 (281)
295 cd06421 CESA_CelA_like CESA_Ce 64.7 81 0.0017 27.9 10.5 100 26-140 6-111 (234)
296 TIGR03111 glyc2_xrt_Gpos1 puta 64.5 68 0.0015 32.3 10.8 99 25-141 53-159 (439)
297 PRK13412 fkp bifunctional fuco 63.4 11 0.00024 41.6 5.1 29 367-395 343-372 (974)
298 cd04184 GT2_RfbC_Mx_like Myxoc 60.9 98 0.0021 26.6 10.1 99 26-139 6-109 (202)
299 cd04187 DPM1_like_bac Bacteria 60.7 73 0.0016 27.1 9.1 45 97-145 66-111 (181)
300 cd06420 GT2_Chondriotin_Pol_N 56.4 1.1E+02 0.0023 25.8 9.4 99 27-138 3-104 (182)
301 PF01983 CofC: Guanylyl transf 56.2 22 0.00048 32.1 4.9 107 2-138 1-113 (217)
302 cd02526 GT2_RfbF_like RfbF is 56.0 1.5E+02 0.0032 26.3 14.1 93 27-135 3-97 (237)
303 COG1664 CcmA Integral membrane 54.0 1.2E+02 0.0027 25.4 8.8 15 328-342 58-72 (146)
304 cd06438 EpsO_like EpsO protein 53.8 1.4E+02 0.003 25.4 12.0 100 26-140 2-108 (183)
305 cd06435 CESA_NdvC_like NdvC_li 53.5 1.2E+02 0.0027 26.9 9.7 98 26-139 3-110 (236)
306 cd06913 beta3GnTL1_like Beta 1 53.3 1.5E+02 0.0032 26.2 10.0 104 27-142 3-113 (219)
307 cd02522 GT_2_like_a GT_2_like_ 51.0 1.7E+02 0.0037 25.6 10.4 94 26-141 4-100 (221)
308 COG1215 Glycosyltransferases, 50.3 1E+02 0.0022 30.6 9.4 106 25-143 58-167 (439)
309 PRK10018 putative glycosyl tra 50.3 2.2E+02 0.0048 26.7 11.6 98 26-140 10-112 (279)
310 PF04519 Bactofilin: Polymer-f 50.1 96 0.0021 23.9 7.2 27 367-393 70-96 (101)
311 PRK13915 putative glucosyl-3-p 49.3 1.4E+02 0.003 28.5 9.6 109 26-147 36-151 (306)
312 PRK11498 bcsA cellulose syntha 48.9 1.6E+02 0.0035 32.5 10.9 104 25-149 264-374 (852)
313 PRK10714 undecaprenyl phosphat 48.4 2.3E+02 0.005 27.2 11.1 46 97-146 76-122 (325)
314 cd02511 Beta4Glucosyltransfera 46.8 2.1E+02 0.0046 25.5 10.6 95 26-142 5-100 (229)
315 PF13641 Glyco_tranf_2_3: Glyc 45.4 65 0.0014 28.6 6.4 104 26-142 6-115 (228)
316 PTZ00260 dolichyl-phosphate be 45.4 1.9E+02 0.0042 27.8 10.1 48 97-147 148-199 (333)
317 cd02520 Glucosylceramide_synth 42.9 2.2E+02 0.0048 24.5 10.3 100 26-138 6-111 (196)
318 TIGR03472 HpnI hopanoid biosyn 42.2 1.9E+02 0.0042 28.3 9.7 102 26-140 46-153 (373)
319 COG1216 Predicted glycosyltran 41.6 2.8E+02 0.006 26.2 10.4 103 29-147 12-118 (305)
320 COG1664 CcmA Integral membrane 37.8 2.3E+02 0.005 23.8 8.0 27 367-393 91-117 (146)
321 COG0381 WecB UDP-N-acetylgluco 36.2 1.6E+02 0.0035 29.0 7.6 79 39-127 22-104 (383)
322 TIGR03030 CelA cellulose synth 34.1 4E+02 0.0087 28.9 11.2 40 98-140 215-255 (713)
323 cd06437 CESA_CaSu_A2 Cellulose 31.7 2.4E+02 0.0053 25.0 8.0 97 26-138 6-112 (232)
324 PF00583 Acetyltransf_1: Acety 26.4 1.1E+02 0.0023 21.8 3.9 35 31-66 43-77 (83)
325 PRK00923 sirohydrochlorin coba 25.1 94 0.002 25.1 3.6 23 31-54 44-66 (126)
326 TIGR00285 DNA-binding protein 24.3 92 0.002 23.6 3.0 43 27-70 4-52 (87)
327 PRK10063 putative glycosyl tra 22.0 6.1E+02 0.013 23.1 11.7 94 28-138 8-106 (248)
328 PF10111 Glyco_tranf_2_2: Glyc 21.8 6.5E+02 0.014 23.3 11.2 37 97-136 74-111 (281)
329 PF05060 MGAT2: N-acetylglucos 20.7 1.6E+02 0.0035 28.8 4.6 56 13-68 23-81 (356)
No 1
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-65 Score=478.04 Aligned_cols=383 Identities=38% Similarity=0.661 Sum_probs=342.9
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCC-CC
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGK-DG 79 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~-~~ 79 (429)
++.|+|||||.|+||.|||..++||-+|+||+|.||+++|++|.++|+++|.++++|+..++.+||+.+++ |++.. ++
T Consensus 5 ~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~-w~l~~~~~ 83 (393)
T COG0448 5 NVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWP-WDLDRKNG 83 (393)
T ss_pred ceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCc-cccccccC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999998 76644 67
Q ss_pred cEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCC
Q 044626 80 FVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPG 159 (429)
Q Consensus 80 ~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~ 159 (429)
.+.+++.++....+.|..||++++++.+..++++..+.++++.||++++.|++++++.|.++++++|+++.+++.+++++
T Consensus 84 ~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~ 163 (393)
T COG0448 84 GVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASR 163 (393)
T ss_pred cEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHhhhh
Confidence 78899887764445699999999999999999888899999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCC---CCcccccccchh
Q 044626 160 FGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLP---EATDLGSEVIPA 236 (429)
Q Consensus 160 ~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~---~~~~~~~d~l~~ 236 (429)
||++.+|++++|++|.|||.... ....+.++|+|+|+++.|.++|++... +..+|..+++|.
T Consensus 164 fGim~~D~~~~i~~F~eKp~~~~---------------~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~ 228 (393)
T COG0448 164 FGVMNVDENGRIIEFVEKPADGP---------------PSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPK 228 (393)
T ss_pred cCceEECCCCCEEeeeeccCcCC---------------cccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHHHH
Confidence 99999999999999999998621 023479999999999999999997643 457899999999
Q ss_pred cccCCceEEEEEecceEEecCCHHHHHHHhHhhhcccCCCcceeCCCCceecCCccCCCeEE-eeeEeeCeEECCCcEEc
Q 044626 237 AISIGMKVEAYLFDGYWEDMRSIEAFYHANMECIKRSNMRYNFYDRDCPVYTMPRCLPPTMI-REAVIRDSVVGDGCIIN 315 (429)
Q Consensus 237 l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~i~ 315 (429)
+++.+ ++++|+++|||.|++|.++|++||+++++.. +....++++++|++.....||+.+ .++.+.+|+|++||+|.
T Consensus 229 ~~~~~-~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~-~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~nSLv~~GciI~ 306 (393)
T COG0448 229 LLERG-KVYAYEFSGYWRDVGTIDSYYEANMDLLSPQ-PELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIIS 306 (393)
T ss_pred HHhcC-CEEEEeccchhhhcccHHHHHHhhHHhcCCC-CcccccCCCCceeecCCCCCCceEecCceEeeeeeeCCeEEE
Confidence 99985 5999999999999999999999999999965 678889999999999999999999 67778999999999999
Q ss_pred ceEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEecC
Q 044626 316 RCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINK 395 (429)
Q Consensus 316 ~~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~ 395 (429)
+ +|+||+++++++|+++|+|++|++|++ |.||++|.|.+++|++||.|++|++|++.
T Consensus 307 G-~V~nSVL~~~v~I~~gs~i~~svim~~----------------------~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 307 G-TVENSVLFRGVRIGKGSVIENSVIMPD----------------------VEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred e-EEEeeEEecCeEECCCCEEEeeEEeCC----------------------cEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 9 999999999999999999999999998 89999999999999999999999999865
Q ss_pred CCCCCCeeecCCeEEccCEEEEcCCCEeCCCcc
Q 044626 396 DGVQEGDREANGYIISEGIVVIIHGAEIADGSI 428 (429)
Q Consensus 396 ~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~v 428 (429)
... ...-. +.+. +++++|++++.++.+..
T Consensus 364 ~~~--~d~~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 364 KPE--EDRKR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred cch--hcccc-cccc-CCcEEEecccEeccccc
Confidence 411 11112 3444 66688888888876643
No 2
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=1.8e-60 Score=476.46 Aligned_cols=424 Identities=50% Similarity=0.928 Sum_probs=346.7
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCC---
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGK--- 77 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~--- 77 (429)
+|+|||||||+|+||+|||..+||||+||+|+||||+|+|++|.++|+++|+++++++.+++.+|+.+.+. |+...
T Consensus 3 ~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~-~~~~~~~~ 81 (436)
T PLN02241 3 SVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYN-FGNGGNFG 81 (436)
T ss_pred ceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCC-CCCCcccC
Confidence 69999999999999999999999999999997799999999999999999999999999999999987654 33221
Q ss_pred CCcEEEEeccccccccCcccCcHHHHHHHHHHhhcCC---CCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccC
Q 044626 78 DGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYP---VTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIR 154 (429)
Q Consensus 78 ~~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~---~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~ 154 (429)
..++.+.+..|...+..|++|++++++.++.++++.. .++||+++||++++.++.+++++|+++++++|+++.+.+.
T Consensus 82 ~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~ 161 (436)
T PLN02241 82 DGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDE 161 (436)
T ss_pred CCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecch
Confidence 2235565555432223467999999999987776421 3799999999999999999999999999999999887765
Q ss_pred CCCCCccEEEEcCCCCEEEEEecCcccccccccCCCC----CCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccc
Q 044626 155 DKHPGFGLLRVNPVNQVIEFSMKSERETITSISGKSS----RKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLG 230 (429)
Q Consensus 155 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~ 230 (429)
+++..||++.+|+++++.+|.|||..+....+..+++ .+......++++++|+|+|++++|..++++..+...+|.
T Consensus 162 ~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~ 241 (436)
T PLN02241 162 SRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFG 241 (436)
T ss_pred hhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchh
Confidence 5678999999988899999999986542111111110 000000124789999999999999777776544444677
Q ss_pred cccchhcccCCceEEEEEecceEEecCCHHHHHHHhHhhhcccCCCcceeCCCCceecCCccCCCeEEeeeEeeCeEECC
Q 044626 231 SEVIPAAISIGMKVEAYLFDGYWEDMRSIEAFYHANMECIKRSNMRYNFYDRDCPVYTMPRCLPPTMIREAVIRDSVVGD 310 (429)
Q Consensus 231 ~d~l~~l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~ 310 (429)
.++++.++++|.++++|.+++||.|+++|++|+++++.++... +...++.++..+.......|++.+.++.+.++.|++
T Consensus 242 ~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I~~ 320 (436)
T PLN02241 242 SEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQP-PKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSIISH 320 (436)
T ss_pred HHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCC-chhhccCCCCcccccCCCCCCcEecCCeEEEeEEcC
Confidence 8999999988789999999999999999999999999999865 555566677777777777788988888887899999
Q ss_pred CcEEcceEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEECCCc
Q 044626 311 GCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNV 390 (429)
Q Consensus 311 ~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~ 390 (429)
+|+|+.+.|++|+|+++|.||++|+|.++++++.++++.+..+ + ++...+..++.||++|.+.+++|+++|.||+++
T Consensus 321 ~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~--~-~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~ 397 (436)
T PLN02241 321 GCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEI--A-SLLAEGKVPIGIGENTKIRNAIIDKNARIGKNV 397 (436)
T ss_pred CcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCcccccccc--c-cccccCCcceEECCCCEEcceEecCCCEECCCc
Confidence 9999887889999999999999999999999997665553322 1 111222223589999999999999999999999
Q ss_pred EEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCCccC
Q 044626 391 LIINKDGVQEGDREANGYIISEGIVVIIHGAEIADGSII 429 (429)
Q Consensus 391 ~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~vv 429 (429)
.+.+++++.+..++|+++++++|+|+||+++.|++||+|
T Consensus 398 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 398 VIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred EEecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 999999999999999999999997799999999999986
No 3
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.6e-58 Score=461.23 Aligned_cols=423 Identities=48% Similarity=0.865 Sum_probs=342.3
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
+++|||||||.|+||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++++|+.+.+. ++....+.
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~-~~~~~~g~ 81 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYN-FDGFSGGF 81 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcC-ccccCCCE
Confidence 58999999999999999999999999999998799999999999999999999999999999999986432 11100122
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCc
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGF 160 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~ 160 (429)
+.+.+.++...+..|.+||+++++++++++.....++|++++||++++.++..++++|++.++++|+++.+.+.+++..|
T Consensus 82 ~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~y 161 (429)
T PRK02862 82 VEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGF 161 (429)
T ss_pred EEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccc
Confidence 44544444322233458999999999999964334789999999999999999999999999999998877655567899
Q ss_pred cEEEEcCCCCEEEEEecCcccccccccCCCC----CCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchh
Q 044626 161 GLLRVNPVNQVIEFSMKSERETITSISGKSS----RKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPA 236 (429)
Q Consensus 161 g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~ 236 (429)
|++.+|+++++..|.|||..+....+..+.+ .+.......+++++|+|+|++++|.+++++. ++..++..+++++
T Consensus 162 G~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~~~~~dil~~ 240 (429)
T PRK02862 162 GLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYTDFGKEIIPE 240 (429)
T ss_pred eEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChhhhHHHHHHH
Confidence 9999998899999999986432111111110 0000111346889999999999997777653 2334566789999
Q ss_pred cccCCceEEEEEecceEEecCCHHHHHHHhHhhhcccCCCcceeCCCCceecCCccCCCeEEeeeEeeCeEECCCcEEcc
Q 044626 237 AISIGMKVEAYLFDGYWEDMRSIEAFYHANMECIKRSNMRYNFYDRDCPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR 316 (429)
Q Consensus 237 l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~ 316 (429)
+++. .++++|.++++|.|++||++|+++|+.++....+....+.+..++...+.+.|++.+.++.+.++.||++|.|..
T Consensus 241 l~~~-~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig~~~~i~~ 319 (429)
T PRK02862 241 AIRD-YKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIAEGCIIKN 319 (429)
T ss_pred Hhcc-CcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEECCCCEECC
Confidence 9764 789999999999999999999999999994443555556677778877888899888778888999999999933
Q ss_pred eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEecCC
Q 044626 317 CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINKD 396 (429)
Q Consensus 317 ~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~ 396 (429)
+.|++|+||++|+||++|+|.+|++++.+++++... +.++.+++...+.||++|.|.+|+|+++|.||++|.+.+.+
T Consensus 320 ~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~---~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~~ 396 (429)
T PRK02862 320 CSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEE---REELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKD 396 (429)
T ss_pred cEEEEEEEeCCcEECCCCEEEeeEEecCcccccccc---cccccccCCcccEECCCCEEEEEEECCCcEECCCcEEecCC
Confidence 889999999999999999999999999777776544 44555666667999999999999999999999999999888
Q ss_pred CCCCCeeecCCeEEccCEEEEcCCCEeCCCccC
Q 044626 397 GVQEGDREANGYIISEGIVVIIHGAEIADGSII 429 (429)
Q Consensus 397 ~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~vv 429 (429)
.+.......+|+++++|+|+|+.++++++|++|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 397 NVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred CcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 887777777899999998899999999999875
No 4
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1e-56 Score=443.89 Aligned_cols=353 Identities=33% Similarity=0.631 Sum_probs=300.2
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCC-CC
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGK-DG 79 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~-~~ 79 (429)
+|+|||||||+||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+... |+++. ..
T Consensus 3 ~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~-~~~~~~~~ 81 (380)
T PRK05293 3 EMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSP-WDLDRING 81 (380)
T ss_pred cEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCc-ccccCCCC
Confidence 59999999999999999999999999999998789999999999999999999999999999999976543 55543 22
Q ss_pred cEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCC
Q 044626 80 FVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPG 159 (429)
Q Consensus 80 ~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~ 159 (429)
.+.+.+.++...+.+|++||+++++++++++.....++||+++||++++.++.++++.|+++++++++++...+.+++..
T Consensus 82 ~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~ 161 (380)
T PRK05293 82 GVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASR 161 (380)
T ss_pred CEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhccc
Confidence 34454222322334577999999999999996433378999999999999999999999988888888876665557889
Q ss_pred ccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCC---CCcccccccchh
Q 044626 160 FGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLP---EATDLGSEVIPA 236 (429)
Q Consensus 160 ~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~---~~~~~~~d~l~~ 236 (429)
||++.+|++++|..+.|||..+ .+++.++|+|+|++++|.+++++... ...+|.+++++.
T Consensus 162 yG~v~~d~~g~V~~~~eKp~~~-----------------~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~ 224 (380)
T PRK05293 162 FGIMNTDENMRIVEFEEKPKNP-----------------KSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPL 224 (380)
T ss_pred cCEEEECCCCcEEEEEeCCCCC-----------------CcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHH
Confidence 9999998889999999997643 35688999999999998767765321 234566799999
Q ss_pred cccCCceEEEEEecceEEecCCHHHHHHHhHhhhcccCCCcceeCCCCceecCCccCCCeEE-eeeEeeCeEECCCcEEc
Q 044626 237 AISIGMKVEAYLFDGYWEDMRSIEAFYHANMECIKRSNMRYNFYDRDCPVYTMPRCLPPTMI-REAVIRDSVVGDGCIIN 315 (429)
Q Consensus 237 l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~i~ 315 (429)
+++++.++++|+.+++|.|++++++|+++++.++... +....+++...+...+.+.+|+.| +++.+.++.||++|.|+
T Consensus 225 l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~Ig~~~~I~ 303 (380)
T PRK05293 225 YLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPE-NPLNLFDRNWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVVY 303 (380)
T ss_pred HhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCC-chhhhcCCCCceecCCcCCCCCEECCCCEEecCEECCCCEEc
Confidence 9987788999999999999999999999999999766 445566777788888888899999 78888999999999998
Q ss_pred ceEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEecC
Q 044626 316 RCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINK 395 (429)
Q Consensus 316 ~~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~ 395 (429)
. .+.+|+||++|+||++|+|.+|+++.+ +.||++|.|.+|+|+++|.|++++.+.++
T Consensus 304 ~-~v~~s~ig~~~~I~~~~~i~~svi~~~----------------------~~i~~~~~i~~~ii~~~~~i~~~~~i~~~ 360 (380)
T PRK05293 304 G-TVEHSVLFQGVQVGEGSVVKDSVIMPG----------------------AKIGENVVIERAIIGENAVIGDGVIIGGG 360 (380)
T ss_pred c-eecceEEcCCCEECCCCEEECCEEeCC----------------------CEECCCeEEeEEEECCCCEECCCCEEcCC
Confidence 6 567999999999999999999999988 89999999999999999999999999744
No 5
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=3.2e-56 Score=402.57 Aligned_cols=359 Identities=33% Similarity=0.516 Sum_probs=276.7
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
.|+|+||.||.||||+|||..+||||+|++|+ |||++++++|.++|+++|++.++|+++++..|+.+.|.. + ..
T Consensus 9 ~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~---~--lg 82 (371)
T KOG1322|consen 9 SVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGK---E--LG 82 (371)
T ss_pred ceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhh---c--cc
Confidence 48999999999999999999999999999998 999999999999999999999999999888888776542 2 13
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCc
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGF 160 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~ 160 (429)
|+++...|++ . +|+++.+..+++++....+.+|+|++||+++..++++++++|++++++.|++++++. +|+.|
T Consensus 83 Vei~~s~ete--p---lgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vd--epSky 155 (371)
T KOG1322|consen 83 VEILASTETE--P---LGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVD--EPSKY 155 (371)
T ss_pred eEEEEEeccC--C---CcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEecc--Ccccc
Confidence 7888887753 3 455555555555555433359999999999999999999999999999999998876 49999
Q ss_pred cEEEEcC-CCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchhccc
Q 044626 161 GLLRVNP-VNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPAAIS 239 (429)
Q Consensus 161 g~v~~d~-~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~l~~ 239 (429)
|++..|+ +|+|..|.|||... .++-+++|+|+|+|++|++++. -..+|..+++|.+++
T Consensus 156 Gvv~~d~~~grV~~F~EKPkd~-----------------vsnkinaGiYi~~~~vL~ri~~----~ptSiekEifP~~a~ 214 (371)
T KOG1322|consen 156 GVVVIDEDTGRVIRFVEKPKDL-----------------VSNKINAGIYILNPEVLDRILL----RPTSIEKEIFPAMAE 214 (371)
T ss_pred ceEEEecCCCceeEehhCchhh-----------------hhccccceEEEECHHHHhHhhh----cccchhhhhhhhhhh
Confidence 9999998 89999999999843 4667789999999999987762 234588999998887
Q ss_pred CCceEEEEEecceEEecCCHHHHHHHhHhhhcccCCCcceeCCCCceecCCccCCCeEEeeeEe--eCeEECCCcEEcce
Q 044626 240 IGMKVEAYLFDGYWEDMRSIEAFYHANMECIKRSNMRYNFYDRDCPVYTMPRCLPPTMIREAVI--RDSVVGDGCIINRC 317 (429)
Q Consensus 240 ~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i--~~~~ig~~~~i~~~ 317 (429)
. +++++|.++|||.||++|.+|+.+...+++.. +..+..+..|++.+.++.+ .-..+|++|.|++
T Consensus 215 ~-~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~-----------~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~- 281 (371)
T KOG1322|consen 215 E-HQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSL-----------PKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGP- 281 (371)
T ss_pred c-CceEEEecCchhhhcCCHHHHHHHHHHHHhhC-----------cccCCccccCCccccccEeeccccccCCccEECC-
Confidence 6 89999999999999999999999987777654 2233344556655544443 2456889999999
Q ss_pred EeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEecCCC
Q 044626 318 KIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINKDG 397 (429)
Q Consensus 318 ~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~~ 397 (429)
|++||.+|+|+.|+.|++|+++++++|+....++++. .+..+.||.++ +|..+|++|.+++|.+...
T Consensus 282 ---~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~i-----vg~~~~IG~~~-----~id~~a~lG~nV~V~d~~~ 348 (371)
T KOG1322|consen 282 ---NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSI-----VGWNVPIGIWA-----RIDKNAVLGKNVIVADEDY 348 (371)
T ss_pred ---CceECCCcEecCceEEEeeEEEccceechhHHHHhhh-----ccccccccCce-----EEecccEeccceEEecccc
Confidence 9999999999999999999999997766666666555 11113444443 4444444555555544333
Q ss_pred CCCCeeecCCeEEccCEEEEcCCCEe
Q 044626 398 VQEGDREANGYIISEGIVVIIHGAEI 423 (429)
Q Consensus 398 ~~~~~~~~~~~~i~~~~~~i~~~~~i 423 (429)
+.+. .+..+.++++.|...+.|
T Consensus 349 vn~g----~~l~~ks~~~~v~~~~iI 370 (371)
T KOG1322|consen 349 VNEG----SGLPIKSGITVVLKPAII 370 (371)
T ss_pred cccc----eeEEeccceeeccccccc
Confidence 3222 344444554455444443
No 6
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.5e-53 Score=421.98 Aligned_cols=381 Identities=30% Similarity=0.557 Sum_probs=296.4
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
+|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.+...+.. ..+
T Consensus 5 ~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~-~~~ 83 (407)
T PRK00844 5 KVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGLL-GNY 83 (407)
T ss_pred ceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCccccC-CCe
Confidence 5899999999999999999999999999999879999999999999999999999999999999997543211111 111
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCc
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGF 160 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~ 160 (429)
+...+ .+.....+|++||+++++++++++.+...++|++++||++++.++.+++++|+++++++|+++...+.+++..|
T Consensus 84 ~~~~~-~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~ 162 (407)
T PRK00844 84 ITPVP-AQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAF 162 (407)
T ss_pred EEECC-cccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccC
Confidence 21111 11111234679999999999999965323569999999999999999999999999999888876655577899
Q ss_pred cEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhC---CCCcccccccchhc
Q 044626 161 GLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYL---PEATDLGSEVIPAA 237 (429)
Q Consensus 161 g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~---~~~~~~~~d~l~~l 237 (429)
|++.+|++|+|..|.|||..+... .. ...+.++++|+|+|++++|.+++++.. ....++..|+++.|
T Consensus 163 Gvv~~d~~g~v~~~~eKp~~~~~~--~~--------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l 232 (407)
T PRK00844 163 GVIEVDPDGRIRGFLEKPADPPGL--PD--------DPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRL 232 (407)
T ss_pred CEEEECCCCCEEEEEECCCCcccc--cC--------CCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHH
Confidence 999999889999999998643110 00 013578999999999999866776421 13345667999999
Q ss_pred ccCCceEEEEEe------------cceEEecCCHHHHHHHhHhhhcccCCCcceeCCCCceecCCccCCCeEE-eee---
Q 044626 238 ISIGMKVEAYLF------------DGYWEDMRSIEAFYHANMECIKRSNMRYNFYDRDCPVYTMPRCLPPTMI-REA--- 301 (429)
Q Consensus 238 ~~~g~~i~~~~~------------~~~~~~i~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~--- 301 (429)
++++ ++++|.+ +++|.|+++|++|+++|+.+++.. +......+...+.......|++.+ .++
T Consensus 233 ~~~~-~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (407)
T PRK00844 233 VERG-RAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVH-PVFNLYNREWPIYTSSPNLPPAKFVDGGGRV 310 (407)
T ss_pred hccC-eEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCC-CccccCCCCCcccccCCCCCCceEecCCCcc
Confidence 9884 7999966 589999999999999999999765 333333444445544445566665 332
Q ss_pred -EeeCeEECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEE
Q 044626 302 -VIRDSVVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVI 380 (429)
Q Consensus 302 -~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i 380 (429)
.+.++.||++|.|+.+.|.+|+||++|+|+++|+|++++++.+ +.||++|.|.+|+|
T Consensus 311 ~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~----------------------~~i~~~~~i~~~ii 368 (407)
T PRK00844 311 GSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG----------------------VRIGRGAVVRRAIL 368 (407)
T ss_pred ceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC----------------------CEECCCCEEEeeEE
Confidence 4578999999999767888999999999999999999998887 89999999999999
Q ss_pred ecCcEECCCcEEecCCCCCCCeeecCCeEEc-cCEEEEcCCCE
Q 044626 381 DKNARIGKNVLIINKDGVQEGDREANGYIIS-EGIVVIIHGAE 422 (429)
Q Consensus 381 g~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~-~~~~~i~~~~~ 422 (429)
+++|.|++++++++.. +.. +++..+. .|.++|+++++
T Consensus 369 ~~~~~i~~~~~i~~~~---~~~--~~~~~~~~~~~~~i~~~~~ 406 (407)
T PRK00844 369 DKNVVVPPGATIGVDL---EED--RRRFTVSEGGIVVVPKGQR 406 (407)
T ss_pred CCCCEECCCCEECCCc---ccc--ccceEeccceEEEeCCCCC
Confidence 9999999999997531 111 3344554 56566666654
No 7
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=5.9e-53 Score=420.63 Aligned_cols=384 Identities=30% Similarity=0.545 Sum_probs=302.6
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcch-hHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCC
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYR-LVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDG 79 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~p-lI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 79 (429)
+++|||||||.||||+|||..+||||+||+|+ | ||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.....+...
T Consensus 15 ~~~aVILAaG~GtRl~pLT~~~PK~llpv~gk-p~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~ 93 (425)
T PRK00725 15 DTLALILAGGRGSRLKELTDKRAKPAVYFGGK-FRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFREELGE 93 (425)
T ss_pred ceEEEEECCCCCCcchhhhCCCcceeEEECCE-EEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccccCCCC
Confidence 47899999999999999999999999999999 6 999999999999999999999999999999998643210001112
Q ss_pred cEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCC
Q 044626 80 FVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPG 159 (429)
Q Consensus 80 ~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~ 159 (429)
.+.+.+..+....++|++||++++++++++++...+++|+|++||++++.++.+++++|+++++++++++.+.+.+++..
T Consensus 94 ~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~ 173 (425)
T PRK00725 94 FVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASA 173 (425)
T ss_pred eEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhccc
Confidence 34444444432133467999999999999997543478999999999999999999999999999999887765567889
Q ss_pred ccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhC---CCCcccccccchh
Q 044626 160 FGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYL---PEATDLGSEVIPA 236 (429)
Q Consensus 160 ~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~---~~~~~~~~d~l~~ 236 (429)
||++.+|++++|..|.|||..+.. +.. ...+.++++|+|+|++++|.+++++.. ....+|..|+++.
T Consensus 174 yG~v~~d~~~~V~~~~EKp~~~~~--~~~--------~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~ 243 (425)
T PRK00725 174 FGVMAVDENDRITAFVEKPANPPA--MPG--------DPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPK 243 (425)
T ss_pred ceEEEECCCCCEEEEEECCCCccc--ccc--------CccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHH
Confidence 999999988999999999864310 000 013568999999999999876776431 1234667899999
Q ss_pred cccCCceEEEEEec-----------ceEEecCCHHHHHHHhHhhhcccCCCcceeCCCCceecCCccCCCeEE-e---e-
Q 044626 237 AISIGMKVEAYLFD-----------GYWEDMRSIEAFYHANMECIKRSNMRYNFYDRDCPVYTMPRCLPPTMI-R---E- 300 (429)
Q Consensus 237 l~~~g~~i~~~~~~-----------~~~~~i~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~---~- 300 (429)
++++ .++++|.++ +||.|+++|++|+++|+.++... +....+.....+.+.....|++.+ . +
T Consensus 244 l~~~-~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~-~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~ 321 (425)
T PRK00725 244 IVEE-GKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVT-PELDLYDRNWPIWTYQEQLPPAKFVFDRSGR 321 (425)
T ss_pred Hhcc-CcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCC-chhhccCCCCccccCCCCCCCCeEeccCCCC
Confidence 9987 579999885 59999999999999999999754 444444555556555656677765 2 2
Q ss_pred -eEeeCeEECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceE
Q 044626 301 -AVIRDSVVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAV 379 (429)
Q Consensus 301 -~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ 379 (429)
+.+.+++||++|+|..|.|++|+|+++|+||++|+|++|+++++ +.||++|.|.+|+
T Consensus 322 ~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~----------------------~~I~~~~~i~~~i 379 (425)
T PRK00725 322 RGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD----------------------VNVGRSCRLRRCV 379 (425)
T ss_pred cceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC----------------------CEECCCCEEeeEE
Confidence 34679999999999448899999999999999999999999998 8999999999999
Q ss_pred EecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEe
Q 044626 380 IDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEI 423 (429)
Q Consensus 380 ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i 423 (429)
|+++|.|+++++|+........ ...++..|+|+|+.++.+
T Consensus 380 i~~~~~i~~~~~i~~~~~~~~~----~~~~~~~~~~~i~~~~~~ 419 (425)
T PRK00725 380 IDRGCVIPEGMVIGEDPEEDAK----RFRRSEEGIVLVTREMLD 419 (425)
T ss_pred ECCCCEECCCCEECCCCCCCCc----eeEecCccEEEECCCccc
Confidence 9999999999999744222111 133445677788777554
No 8
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-53 Score=409.67 Aligned_cols=353 Identities=25% Similarity=0.434 Sum_probs=285.1
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
.|+|||||||.||||+|||..+||||+||+|+ |||+|+|++|..+|+++++++++|..+++.+|+.+++. ++.+
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~-~~~~---- 74 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEG-LGVR---- 74 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccc-cCCc----
Confidence 49999999999999999999999999999999 99999999999999999999999999999999998644 3333
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCc
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGF 160 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~ 160 (429)
+.+..+.. ++||+++|+++++++.. ++|++++||.+++.++..++++|+++.+.++++..... ++..|
T Consensus 75 --I~y~~e~~-----~lGTag~l~~a~~~l~~---~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~--~~~~~ 142 (358)
T COG1208 75 --ITYVVEKE-----PLGTAGALKNALDLLGG---DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL--DPSEF 142 (358)
T ss_pred --eEEEecCC-----cCccHHHHHHHHHhcCC---CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC--CCCcC
Confidence 44333321 48999999999999974 89999999999999999999999999777888776655 34889
Q ss_pred cEEEEcCC-CCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchhccc
Q 044626 161 GLLRVNPV-NQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPAAIS 239 (429)
Q Consensus 161 g~v~~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~l~~ 239 (429)
|++..+++ +++.+|.|||.... ..++++++|+|+|++++|+ .++. ....+|..++++.|++
T Consensus 143 Gvv~~~~~~~~v~~f~ekp~~~~---------------~~~~~in~Giyi~~~~v~~-~i~~--~~~~~~~~~~~~~l~~ 204 (358)
T COG1208 143 GVVETDDGDGRVVEFREKPGPEE---------------PPSNLINAGIYIFDPEVFD-YIEK--GERFDFEEELLPALAA 204 (358)
T ss_pred ceEEecCCCceEEEEEecCCCCC---------------CCCceEEeEEEEECHHHhh-hccc--CCcccchhhHHHHHHh
Confidence 99988744 59999999984210 1468999999999999997 4432 2456676789999999
Q ss_pred CCceEEEEEecceEEecCCHHHHHHHhHhhhcccCCCcce--eCCCC-ceecCCccCCCeEEeeeEeeCeEECCCcEEcc
Q 044626 240 IGMKVEAYLFDGYWEDMRSIEAFYHANMECIKRSNMRYNF--YDRDC-PVYTMPRCLPPTMIREAVIRDSVVGDGCIINR 316 (429)
Q Consensus 240 ~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~~~~~~~~~--~~~~~-~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~ 316 (429)
++..++++.++++|.|+++|++|.++++.+++..... .+ ..... .+.. +.+.+|+++. +++.||.++.|++
T Consensus 205 ~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~-~~i~gp~~ig----~~~~i~~~~~i~~ 278 (358)
T COG1208 205 KGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKS-PLGPIEEPVVIIRS-AYIIGPVVIG----PGAKIGPGALIGP 278 (358)
T ss_pred CCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccc-cccccccccccccc-ceEeCCEEEC----CCCEECCCCEECC
Confidence 8666999999999999999999999999999644211 11 00000 0122 4444554443 4555555555555
Q ss_pred eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEecCC
Q 044626 317 CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINKD 396 (429)
Q Consensus 317 ~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~ 396 (429)
+|+||++|+||+++.|.+|+++++ +.|++++.|.+|+||.+|+||+++ .
T Consensus 279 ----~~~ig~~~~I~~~~~i~~Sii~~~----------------------~~i~~~~~i~~sIi~~~~~ig~~~-~---- 327 (358)
T COG1208 279 ----YTVIGEGVTIGNGVEIKNSIIMDN----------------------VVIGHGSYIGDSIIGENCKIGASL-I---- 327 (358)
T ss_pred ----CcEECCCCEECCCcEEEeeEEEcC----------------------CEECCCCEEeeeEEcCCcEECCce-e----
Confidence 899999999999999999999998 899999999999999999999922 2
Q ss_pred CCCCCeeecCCeEEccCEEEEcCCCEeCCCccC
Q 044626 397 GVQEGDREANGYIISEGIVVIIHGAEIADGSII 429 (429)
Q Consensus 397 ~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~vv 429 (429)
++. ..+|.++.+.++ +++++++.+.+++++
T Consensus 328 -i~d-~~~g~~~~i~~g-~~~~~~~~~~~~~~~ 357 (358)
T COG1208 328 -IGD-VVIGINSEILPG-VVVGPGSVVESGEIE 357 (358)
T ss_pred -ecc-eEecCceEEcCc-eEeCCCccccCcccc
Confidence 556 777888888888 888888888887653
No 9
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=6.8e-50 Score=392.67 Aligned_cols=355 Identities=40% Similarity=0.732 Sum_probs=279.1
Q ss_pred EEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcEEE
Q 044626 4 AVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEV 83 (429)
Q Consensus 4 avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i 83 (429)
|||||||.|+||+|+|.++||||+|++|++|||+|++++|.++|+++|+|+++++.+++.+|+.+.+..... ....+++
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~-~~~~~~~ 79 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDGF-IDGFVTL 79 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccCc-cCCCEEE
Confidence 699999999999999999999999999985699999999999999999999999999999999864321010 1123445
Q ss_pred EeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCccEE
Q 044626 84 IAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGFGLL 163 (429)
Q Consensus 84 ~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g~v 163 (429)
.+.++....++|++||+++++++++.++....++|++++||++++.++.++++.|+++++++++++.+.+.+++..||++
T Consensus 80 ~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v 159 (361)
T TIGR02091 80 LPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVM 159 (361)
T ss_pred eCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEE
Confidence 44333222344678999999999998864334789999999999999999999998888888888777655567889999
Q ss_pred EEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCC---CCcccccccchhcccC
Q 044626 164 RVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLP---EATDLGSEVIPAAISI 240 (429)
Q Consensus 164 ~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~---~~~~~~~d~l~~l~~~ 240 (429)
.+|+++++..+.|||..+... ... ...++.++|+|+|++++|.++++.... ...++..++++.++++
T Consensus 160 ~~d~~~~v~~~~ekp~~~~~~--~~~--------~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~ 229 (361)
T TIGR02091 160 QVDEDGRIVDFEEKPANPPSI--PGM--------PDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEE 229 (361)
T ss_pred EECCCCCEEEEEECCCCcccc--ccc--------ccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhc
Confidence 998888999999997543100 000 012378999999999998666665321 2335667899999987
Q ss_pred CceEEEEEecceEEecCCHHHHHHHhHhhhcccCCCcceeCCCCcee-cCCccCCCeEE-eeeEeeCeEECCCcEEcceE
Q 044626 241 GMKVEAYLFDGYWEDMRSIEAFYHANMECIKRSNMRYNFYDRDCPVY-TMPRCLPPTMI-REAVIRDSVVGDGCIINRCK 318 (429)
Q Consensus 241 g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~-~~~~i~~~~~i-~~~~i~~~~ig~~~~i~~~~ 318 (429)
.++++|.++++|.|++|+++|+++++.+++.. +......+...+. ....+.|++++ +++.+.++.||++|+|+++.
T Consensus 230 -~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~I~~~~ 307 (361)
T TIGR02091 230 -GSVQAYLFSGYWRDVGTIDSFWEANMDLVSVV-PPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEGCIISGAT 307 (361)
T ss_pred -CceEEEeeCCEEEECCCHHHHHHHHHHHhCCC-chhhccccCCceecCCCCCCCceEecCCCEEECCEECCCCEECCCE
Confidence 58999999999999999999999999999865 2222223333332 23356677777 45577889999999998866
Q ss_pred eeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEe
Q 044626 319 IKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLII 393 (429)
Q Consensus 319 v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~ 393 (429)
+.+|+|+++|+|+++|+|.+|+++++ +.||+++.+.+|+||++++|++++.|+
T Consensus 308 v~~s~i~~~~~I~~~~~i~~sii~~~----------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 308 VSHSVLGIRVRIGSGSTVEDSVIMGD----------------------VGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred EEccEECCCCEECCCCEEeeeEEeCC----------------------CEECCCCEEeeeEECCCCEECCCCEeC
Confidence 78999999999999999999888887 789999999999999999999998885
No 10
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=6e-50 Score=393.97 Aligned_cols=349 Identities=25% Similarity=0.438 Sum_probs=273.7
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChh-HHHHHHhccccCcccCCC-
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNST-SLNLHLSRAFSGILRGKD- 78 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~- 78 (429)
.|+|||||||.|+||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+ ++++||.+... |+++..
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~-~~~~~~~ 80 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGRE-WDLHRKR 80 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCC-CCccccc
Confidence 589999999999999999999999999999986899999999999999999999999876 99999986443 565431
Q ss_pred CcEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCC
Q 044626 79 GFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHP 158 (429)
Q Consensus 79 ~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~ 158 (429)
... +....+. ...+..|++++++.+++++.....++|+|++||++++.++.+++++|+++++++|+++.+.+.+++.
T Consensus 81 ~~~-~~~~~~e--~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~ 157 (369)
T TIGR02092 81 DGL-FVFPYND--RDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADAS 157 (369)
T ss_pred CcE-EEEeccC--CCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHcc
Confidence 111 1112232 2223347777899999988532237899999999999999999999999999999988776544566
Q ss_pred Ccc-EEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCC-Ccccccccchh
Q 044626 159 GFG-LLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPE-ATDLGSEVIPA 236 (429)
Q Consensus 159 ~~g-~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~-~~~~~~d~l~~ 236 (429)
.|| ++..+++|++..+.+++... ...+.++|+|+|+++.|.++++..... ...+..+++++
T Consensus 158 ~~g~vv~~~~~g~v~~~~~~~~~~-----------------~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~ 220 (369)
T TIGR02092 158 EYDTILRFDESGKVKSIGQNLNPE-----------------EEENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRE 220 (369)
T ss_pred ccCcEEEEcCCCCEEeccccCCCC-----------------CcceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHH
Confidence 774 55677777887774432211 124578999999999886677654222 22345678888
Q ss_pred cccCCceEEEEEecceEEecCCHHHHHHHhHhhhcccCCCcceeCCCCceecCCccCCCeEE-eeeEeeCeEECCCcEEc
Q 044626 237 AISIGMKVEAYLFDGYWEDMRSIEAFYHANMECIKRSNMRYNFYDRDCPVYTMPRCLPPTMI-REAVIRDSVVGDGCIIN 315 (429)
Q Consensus 237 l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~i~ 315 (429)
+++. .++++|..+++|.|++||++|.+|++.+++.......+......+.....+.+|+.+ +++.|++|.||++|.|+
T Consensus 221 ~~~~-~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~~~Ig~~~~i~ 299 (369)
T TIGR02092 221 NLKE-LNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCIIE 299 (369)
T ss_pred Hhcc-CcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEEeEEcCCCEEe
Confidence 8864 689999999999999999999999999997652211111122234444445688888 67888999999999998
Q ss_pred ceEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEec
Q 044626 316 RCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIIN 394 (429)
Q Consensus 316 ~~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~ 394 (429)
. .+.+|+|+++|+|+++|.|.+++++++ +.|++++.+.+|+||++++||+++.+.+
T Consensus 300 ~-~v~~s~i~~~~~I~~~~~i~~sii~~~----------------------~~I~~~~~i~~~ii~~~~~v~~~~~~~~ 355 (369)
T TIGR02092 300 G-KVENSILSRGVHVGKDALIKNCIIMQR----------------------TVIGEGAHLENVIIDKDVVIEPNVKIAG 355 (369)
T ss_pred e-EEeCCEECCCCEECCCCEEEeeEEeCC----------------------CEECCCCEEEEEEECCCCEECCCCEeCC
Confidence 4 688999999999999999999999987 8999999999999999999999999953
No 11
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.2e-49 Score=368.59 Aligned_cols=389 Identities=21% Similarity=0.254 Sum_probs=317.1
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
+|.+||||||+||||+ +.+||-|-|++|+ ||++|+|+.+...+.+++.+|+++..+++++.+.+...
T Consensus 2 ~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~~--------- 68 (460)
T COG1207 2 SLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERDD--------- 68 (460)
T ss_pred CceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccccC---------
Confidence 4789999999999999 7899999999999 99999999999999999999999999999999986321
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccCCCCC
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIRDKHP 158 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~ 158 (429)
+.++.|. + ++||++|++++++++.+....++||++||. +. ...|+.++++|...++.++++....+ +|.
T Consensus 69 --v~~v~Q~--e---qlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~--dP~ 139 (460)
T COG1207 69 --VEFVLQE--E---QLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELD--DPT 139 (460)
T ss_pred --ceEEEec--c---cCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcC--CCC
Confidence 2223443 2 489999999999999433346899999999 54 77788999999999999999876654 799
Q ss_pred CccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCC---CCcccccccch
Q 044626 159 GFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLP---EATDLGSEVIP 235 (429)
Q Consensus 159 ~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~---~~~~~~~d~l~ 235 (429)
.||-+..+++|.|..|.|..+ +++.+. .-..+++|+|.|+...|.+.|..... ..+++.+|++.
T Consensus 140 GYGRIvr~~~g~V~~IVE~KD----------A~~eek---~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~ 206 (460)
T COG1207 140 GYGRIVRDGNGEVTAIVEEKD----------ASEEEK---QIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIA 206 (460)
T ss_pred CcceEEEcCCCcEEEEEEcCC----------CCHHHh---cCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHH
Confidence 999999998999999999743 332222 23578999999999988878876422 24566789999
Q ss_pred hcccCCceEEEEEecc--eEEecCCHHHHHHHhHhhhccc------------CCCcceeCCCCceecCCccCCCeEEe--
Q 044626 236 AAISIGMKVEAYLFDG--YWEDMRSIEAFYHANMECIKRS------------NMRYNFYDRDCPVYTMPRCLPPTMIR-- 299 (429)
Q Consensus 236 ~l~~~g~~i~~~~~~~--~~~~i~t~~~~~~an~~~l~~~------------~~~~~~~~~~~~~~~~~~i~~~~~i~-- 299 (429)
.+...|.++..+..++ ....+++-..+.++.+.|.++. .|...+++.+..+++++.|+|++.+.
T Consensus 207 i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~ 286 (460)
T COG1207 207 IARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGN 286 (460)
T ss_pred HHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeee
Confidence 9988899999998764 4567888888888888777654 35566788888888888888865553
Q ss_pred -----------eeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECC-cccccccccccCCccccCCcce
Q 044626 300 -----------EAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGA-DFYQQGEDIQSSGKCINHKAIP 366 (429)
Q Consensus 300 -----------~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 366 (429)
++.|.||.||+||.|.+ +.+.+|.||++|.||+.+++.+.+.+++ .+++|=++.|++. .+..
T Consensus 287 t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~-----ig~g 361 (460)
T COG1207 287 TVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKAT-----IGKG 361 (460)
T ss_pred EEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEeccc-----ccCC
Confidence 45556777777777877 7778888888888998888888877777 6677777777777 2333
Q ss_pred eEeCCCCeecceEEecCcEECCCcEEecCCCCCCCee-ecCCeEEccCE-----EEEcCCCEeCCCccC
Q 044626 367 VGIGEDTQIKKAVIDKNARIGKNVLIINKDGVQEGDR-EANGYIISEGI-----VVIIHGAEIADGSII 429 (429)
Q Consensus 367 ~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~~-~~~~~~i~~~~-----~~i~~~~~i~~~~vv 429 (429)
+..++-+.|.++.||.+|.||+|++.+|+++...+.+ ||+++|||+++ +.||+++.|+|||+|
T Consensus 362 sKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStI 430 (460)
T COG1207 362 SKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 430 (460)
T ss_pred ccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceE
Confidence 5566667789999999999999999999999998876 59999999987 899999999999986
No 12
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=3.6e-47 Score=371.98 Aligned_cols=293 Identities=20% Similarity=0.303 Sum_probs=222.4
Q ss_pred EEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeec-ChhHHHHHHhccccCcccCCCCcE
Q 044626 3 AAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQF-NSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 3 ~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~-~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
+|||||||.|+||+|+|..+||||+|++|+ |||+|+|++|.++|++++++++++ +.+++.+|+.+... |+.+
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~~~-~~~~----- 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGER-FGAK----- 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcccc-cCce-----
Confidence 699999999999999999999999999999 999999999999999999999999 88999999976433 4432
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCcc
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGFG 161 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g 161 (429)
+.+..+. ++.|++++++.+++++.+ ++|++++||++++.++.+++++|+++++++++++.+.. ++..|+
T Consensus 74 -~~~~~~~-----~~~G~~~al~~a~~~l~~---~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~--~~~~~g 142 (353)
T TIGR01208 74 -ITYIVQG-----EPLGLAHAVYTARDFLGD---DDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVR--DPTAFG 142 (353)
T ss_pred -EEEEECC-----CCCCHHHHHHHHHHhcCC---CCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECC--ChhhCe
Confidence 3332332 247999999999998863 78999999999999999999999998999888876643 567899
Q ss_pred EEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCC--CCcccccccchhccc
Q 044626 162 LLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLP--EATDLGSEVIPAAIS 239 (429)
Q Consensus 162 ~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~--~~~~~~~d~l~~l~~ 239 (429)
++.++++++|..+.|||..+ .+.+.++|+|+|++.+++ .+++..+ ..+.+..++++.|++
T Consensus 143 ~~~~~~~~~v~~~~ekp~~~-----------------~~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~l~d~l~~l~~ 204 (353)
T TIGR01208 143 VAVLEDGKRILKLVEKPKEP-----------------PSNLAVVGLYMFRPLIFE-AIKNIKPSWRGELEITDAIQWLIE 204 (353)
T ss_pred EEEEcCCCcEEEEEECCCCC-----------------CccceEEEEEEECHHHHH-HHHhcCCCCCCcEEHHHHHHHHHH
Confidence 88887667899999997643 356889999999997665 6654322 123335789999998
Q ss_pred CCceEEEEEecceEEecCCHHHHHHHhHhhhcccCCCcceeCCCCceecCCccCCCeEE-eeeEeeCeEECCCcEEcc-e
Q 044626 240 IGMKVEAYLFDGYWEDMRSIEAFYHANMECIKRSNMRYNFYDRDCPVYTMPRCLPPTMI-REAVIRDSVVGDGCIINR-C 317 (429)
Q Consensus 240 ~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~i~~-~ 317 (429)
+|.++++|.++++|.+++||++|+++++.++.+...... .+.+.+.+.+++.+ +++.|.++.|+.+|.|++ |
T Consensus 205 ~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~~~~------~i~~~~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~ 278 (353)
T TIGR01208 205 KGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQ------GVDDESKIRGRVVVGEGAKIVNSVIRGPAVIGEDC 278 (353)
T ss_pred cCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhcccccC------CcCCCCEEcCCEEECCCCEEeCCEEECCcEECCCC
Confidence 888999999999999999999999999999985311111 13334444555544 344444444444444444 4
Q ss_pred EeeCcEEcCCcEECCCCEEe
Q 044626 318 KIKGTVIGMRTRIGDGAVIE 337 (429)
Q Consensus 318 ~v~~~~ig~~~~ig~~~~i~ 337 (429)
.|.+++|+++|.||++|+|+
T Consensus 279 ~I~~~~i~~~~~Ig~~~~i~ 298 (353)
T TIGR01208 279 IIENSYIGPYTSIGEGVVIR 298 (353)
T ss_pred EEcCcEECCCCEECCCCEEe
Confidence 44445555555555555544
No 13
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.9e-45 Score=370.52 Aligned_cols=392 Identities=19% Similarity=0.257 Sum_probs=277.7
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
+++|||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|++++++++++..+++.+++.+...
T Consensus 3 ~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~~--------- 69 (459)
T PRK14355 3 NLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDGD--------- 69 (459)
T ss_pred cceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCCc---------
Confidence 57899999999999984 689999999999 99999999999999999999999998889999875321
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-e-EeccHHHHHHHHHhcCCceEEEEEeccCCCCC
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-L-YKMDYQRLIEAHRNNKADITIVALNAIRDKHP 158 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i-~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~ 158 (429)
+.+. .+. .++|++++++++++++++. .++|++++||. + ...++..+++.|+..+++++++..+. .++.
T Consensus 70 i~~~--~~~-----~~~Gt~~al~~a~~~l~~~-~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~--~~~~ 139 (459)
T PRK14355 70 VSFA--LQE-----EQLGTGHAVACAAPALDGF-SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARL--ENPF 139 (459)
T ss_pred eEEE--ecC-----CCCCHHHHHHHHHHHhhcc-CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEc--CCCC
Confidence 2222 221 1479999999999998642 27899999998 4 47788999999988888877766554 3567
Q ss_pred CccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCC---CCcccccccch
Q 044626 159 GFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLP---EATDLGSEVIP 235 (429)
Q Consensus 159 ~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~---~~~~~~~d~l~ 235 (429)
.|+.+.+|+++++..+.||+..... + ..+++.++|+|+|+++.|.+.++.... ..+.+.+|+++
T Consensus 140 ~~g~v~~d~~g~v~~~~ek~~~~~~----------~---~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~ 206 (459)
T PRK14355 140 GYGRIVRDADGRVLRIVEEKDATPE----------E---RSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVA 206 (459)
T ss_pred cCCEEEEcCCCCEEEEEEcCCCChh----------H---hhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHH
Confidence 8999888888899999998642100 0 024678999999999987666664322 12344579999
Q ss_pred hcccCCceEEEEEecce--EEecCCHHHHHHHhHhhhcccC-----CCcceeCCCC-ceecCCccCCCeEE-eeeEe-eC
Q 044626 236 AAISIGMKVEAYLFDGY--WEDMRSIEAFYHANMECIKRSN-----MRYNFYDRDC-PVYTMPRCLPPTMI-REAVI-RD 305 (429)
Q Consensus 236 ~l~~~g~~i~~~~~~~~--~~~i~t~~~~~~an~~~l~~~~-----~~~~~~~~~~-~~~~~~~i~~~~~i-~~~~i-~~ 305 (429)
.|+++|.++.+|+++++ |.++++|++|+++++.++.... .....+++.+ .+++++.|++++.| +++.| ++
T Consensus 207 ~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~ 286 (459)
T PRK14355 207 MAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGD 286 (459)
T ss_pred HHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCC
Confidence 99998889999999887 9999999999999886664321 1112344443 34455555555555 34444 47
Q ss_pred eEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCC--------cceeEeCCCCe--
Q 044626 306 SVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHK--------AIPVGIGEDTQ-- 374 (429)
Q Consensus 306 ~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ig~~~~-- 374 (429)
+.||++|.|++ +.|.+|+||++|+|++++++.++++.++..++.+.....-. .+.++ ...+.||.++.
T Consensus 287 ~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~-~i~~~~~ig~~~~~~~~~ig~~~~~~ 365 (459)
T PRK14355 287 TRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGT-ELSAHVKIGNFVETKKIVMGEGSKAS 365 (459)
T ss_pred CEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCC-EeCCCCEECCCccccCCEECCCceee
Confidence 88888888888 88888888888888888888776665554433222111100 00000 00123333333
Q ss_pred ----ecceEEecCcEECCCcEEecCCCCCC-CeeecCCeEEccCE-----EEEcCCCEeCCCccC
Q 044626 375 ----IKKAVIDKNARIGKNVLIINKDGVQE-GDREANGYIISEGI-----VVIIHGAEIADGSII 429 (429)
Q Consensus 375 ----i~~~~ig~~~~ig~~~~i~~~~~~~~-~~~~~~~~~i~~~~-----~~i~~~~~i~~~~vv 429 (429)
+.++.||++|.||+++++.+..+... ...+|++++||.++ +.||++++|++||+|
T Consensus 366 ~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v 430 (459)
T PRK14355 366 HLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTV 430 (459)
T ss_pred eeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 34578889999999988876544432 23445555555442 788888888888865
No 14
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=7.9e-45 Score=369.17 Aligned_cols=389 Identities=15% Similarity=0.184 Sum_probs=267.1
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
.+.|||||||.|+||+| .+||+|+|++|+ |||+|+|++|.+++++++++++++..+++.+++.+... .
T Consensus 4 ~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~~--------~ 71 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELAP--------E 71 (482)
T ss_pred CceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccCC--------c
Confidence 36799999999999996 589999999999 99999999999999999999999988888888865211 0
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccCCCCC
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIRDKHP 158 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~ 158 (429)
+.+. .++ ++.|++++++.+++++.....++|++++||+ ++ ..++.++++.|++.++.++++..+. .++.
T Consensus 72 ~~~~--~~~-----~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~--~~p~ 142 (482)
T PRK14352 72 VDIA--VQD-----EQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTL--DDPT 142 (482)
T ss_pred cEEE--eCC-----CCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeec--CCCC
Confidence 1122 221 2479999999999988543346899999998 44 6778999999988777777665443 3677
Q ss_pred CccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCC---Ccccccccch
Q 044626 159 GFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPE---ATDLGSEVIP 235 (429)
Q Consensus 159 ~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~---~~~~~~d~l~ 235 (429)
.|+.+..+++++|..+.|||...... ....++++|+|+|+++.|.++++..... .+.+..|+++
T Consensus 143 ~yg~~~~~~~g~V~~~~EKp~~~~~~-------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~ 209 (482)
T PRK14352 143 GYGRILRDQDGEVTAIVEQKDATPSQ-------------RAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLA 209 (482)
T ss_pred CCCEEEECCCCCEEEEEECCCCCHHH-------------hhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHH
Confidence 89988888889999999997643100 0235689999999999997776654321 2345689999
Q ss_pred hcccCCceEEEEEecceEEecCCHHHH------HHHhHhhhcccCC--------CcceeCCCCceecCCccCCCeEEe--
Q 044626 236 AAISIGMKVEAYLFDGYWEDMRSIEAF------YHANMECIKRSNM--------RYNFYDRDCPVYTMPRCLPPTMIR-- 299 (429)
Q Consensus 236 ~l~~~g~~i~~~~~~~~~~~i~t~~~~------~~an~~~l~~~~~--------~~~~~~~~~~~~~~~~i~~~~~i~-- 299 (429)
+++++|.++++|+++++|.++++++.| ..+++.++....+ ...++++.+.+++++.|+|++.+.
T Consensus 210 ~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~ 289 (482)
T PRK14352 210 IAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGR 289 (482)
T ss_pred HHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeec
Confidence 999988899999999999999999887 5566655543211 123334444444444444444332
Q ss_pred -----------eeEeeCeEECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEECC-cccccccccccCCccccCCccee
Q 044626 300 -----------EAVIRDSVVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGA-DFYQQGEDIQSSGKCINHKAIPV 367 (429)
Q Consensus 300 -----------~~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 367 (429)
++.|.+++||++|.|+.+.+.+++|+++|.||+++.+..+++++. ..++.....+.+. .+..+
T Consensus 290 v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~-----I~~~~ 364 (482)
T PRK14352 290 TTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNAT-----IGRGT 364 (482)
T ss_pred CEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccE-----ECCCc
Confidence 233344444444444333344555666666666666655555443 1222222211111 11124
Q ss_pred EeCCCCeecceEEecCcEECCCcEEecCC-------CCCCCeeecCCeEEccCEEEEcCCCEeCCCccC
Q 044626 368 GIGEDTQIKKAVIDKNARIGKNVLIINKD-------GVQEGDREANGYIISEGIVVIIHGAEIADGSII 429 (429)
Q Consensus 368 ~ig~~~~i~~~~ig~~~~ig~~~~i~~~~-------~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~vv 429 (429)
.|++.+.+.+++||++|.||+++++.++. .++++..+|.++.|.++ +.||++++|++|++|
T Consensus 365 ~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~-~~Ig~~~~igags~v 432 (482)
T PRK14352 365 KVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAP-VTVGDGAYTGAGTVI 432 (482)
T ss_pred EEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCC-CEECCCcEECCCCEE
Confidence 56666667788999999999999998653 33444555555555666 788889999998865
No 15
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-45 Score=327.17 Aligned_cols=329 Identities=17% Similarity=0.265 Sum_probs=265.9
Q ss_pred CeEEEEEcCC--CCCCcccccccccccccccCCcchhHHHHHHhhHh-cCCCeEEEEeecChhHHHHHHhccccCcccCC
Q 044626 1 SVAAVVFGDG--SESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCIN-SNINKIYALTQFNSTSLNLHLSRAFSGILRGK 77 (429)
Q Consensus 1 ~m~avIla~G--~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~-~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 77 (429)
+.+||||.|| +||||+||+-+.||||+||+|+ |||+|.|+.|.+ .|..+|+++.-|+.+.+.+++......+..
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~-- 78 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKV-- 78 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhccc--
Confidence 4689999999 8999999999999999999999 999999999987 479999999888888888888664332222
Q ss_pred CCcEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCC
Q 044626 78 DGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKH 157 (429)
Q Consensus 78 ~~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~ 157 (429)
.+.+..+. .++||++.|++.+++|-.-..+.+++++||..++.++.+++++|+..+..++++.+++..++.
T Consensus 79 ----pvrYL~E~-----~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~a 149 (407)
T KOG1460|consen 79 ----PVRYLRED-----NPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQA 149 (407)
T ss_pred ----chhhhccC-----CCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHh
Confidence 23333321 369999999999999855445999999999999999999999999999999999999988899
Q ss_pred CCccEEEEc-CCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhh-------------C
Q 044626 158 PGFGLLRVN-PVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEY-------------L 223 (429)
Q Consensus 158 ~~~g~v~~d-~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~-------------~ 223 (429)
.+||-+..| .+++++++.|||... .++.+++|+|+|++++|+.+ ++. +
T Consensus 150 snfG~lV~dP~t~evlHYveKPsTf-----------------vSd~InCGvYlF~~eif~~i-~~v~~q~~~~~~~~~~~ 211 (407)
T KOG1460|consen 150 SNFGCLVEDPSTGEVLHYVEKPSTF-----------------VSDIINCGVYLFTPEIFNAI-AEVYRQRQDLLEVEKDL 211 (407)
T ss_pred hccCeeeecCCcCceEEeecCcchh-----------------hhcccceeEEEecHHHHHHH-HHHHHHHHhhhhhhhcc
Confidence 999999888 579999999999875 68899999999999998632 221 0
Q ss_pred ----CCCccc---ccccchhcccCCceEEEEEecceEEecCCHHHHHHHhHhhhcccC--CCccee-CCCC--ceecCCc
Q 044626 224 ----PEATDL---GSEVIPAAISIGMKVEAYLFDGYWEDMRSIEAFYHANMECIKRSN--MRYNFY-DRDC--PVYTMPR 291 (429)
Q Consensus 224 ----~~~~~~---~~d~l~~l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~~~~--~~~~~~-~~~~--~~~~~~~ 291 (429)
+...+| ..|++..|+.+ .++++|..+++|..+.|+.+-..+++.+|+... .+...- .++. .|..+++
T Consensus 212 ~~l~~g~~d~irLeqDvlspLag~-k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVy 290 (407)
T KOG1460|consen 212 PLLQPGPADFIRLEQDVLSPLAGS-KQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVY 290 (407)
T ss_pred cccCCCccceEEeechhhhhhcCC-CceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeE
Confidence 112333 36899999886 689999999999999999999999999998542 222111 1222 2333344
Q ss_pred cCCCeEEeeeEeeCeEECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCC
Q 044626 292 CLPPTMIREAVIRDSVVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGE 371 (429)
Q Consensus 292 i~~~~~i~~~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~ 371 (429)
|+|. +.+.+.+.||+ |+.||.+++||+|++|.+|+++++ ++|.+
T Consensus 291 IhPs----------akvhptAkiGP----NVSIga~vrvg~GvRl~~sIIl~d----------------------~ei~e 334 (407)
T KOG1460|consen 291 IHPS----------AKVHPTAKIGP----NVSIGANVRVGPGVRLRESIILDD----------------------AEIEE 334 (407)
T ss_pred EcCc----------ceeCCccccCC----CceecCCceecCCceeeeeeeccC----------------------cEeec
Confidence 4443 35555666666 999999999999999999999998 89999
Q ss_pred CCeecceEEecCcEECCCcEEecCC
Q 044626 372 DTQIKKAVIDKNARIGKNVLIINKD 396 (429)
Q Consensus 372 ~~~i~~~~ig~~~~ig~~~~i~~~~ 396 (429)
|+++-+|+||..+.||..+.+.+-.
T Consensus 335 navVl~sIigw~s~iGrWaRVe~~p 359 (407)
T KOG1460|consen 335 NAVVLHSIIGWKSSIGRWARVEGIP 359 (407)
T ss_pred cceEEeeeecccccccceeeecccc
Confidence 9999999999999999999996443
No 16
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.4e-44 Score=363.13 Aligned_cols=386 Identities=18% Similarity=0.213 Sum_probs=257.3
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
+|+|||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|+++|+++++++.+++.+++.. .+
T Consensus 7 ~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~----~~------ 72 (481)
T PRK14358 7 PLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG----SG------ 72 (481)
T ss_pred CceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc----CC------
Confidence 58999999999999996 489999999999 99999999999999999999999988888888853 11
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccCCCCC
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIRDKHP 158 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~ 158 (429)
+.++ .+. +++|++++++.+++++... .++|++++||+ ++ ..+++.++++|+++++++++++.+.+ ++.
T Consensus 73 i~~v--~~~-----~~~Gt~~al~~~~~~l~~~-~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~--~~~ 142 (481)
T PRK14358 73 VAFA--RQE-----QQLGTGDAFLSGASALTEG-DADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELP--DAT 142 (481)
T ss_pred cEEe--cCC-----CcCCcHHHHHHHHHHhhCC-CCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcC--CCC
Confidence 2232 221 2479999999999888532 25799999998 34 77789999999988888888776654 566
Q ss_pred CccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhC---CCCcccccccch
Q 044626 159 GFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYL---PEATDLGSEVIP 235 (429)
Q Consensus 159 ~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~---~~~~~~~~d~l~ 235 (429)
.||++.+|++++|..|.|||..+.. ...+.++++|+|+|+++.++ +++... ...+.+.+|+++
T Consensus 143 ~yG~v~~d~~g~v~~~~Ek~~~~~~-------------~~~~~~~n~Giyi~~~~~~~-~~~~i~~~~~~ge~~l~d~i~ 208 (481)
T PRK14358 143 GYGRIVRGADGAVERIVEQKDATDA-------------EKAIGEFNSGVYVFDARAPE-LARRIGNDNKAGEYYLTDLLG 208 (481)
T ss_pred CceEEEECCCCCEEEEEECCCCChh-------------HhhCCeEEEEEEEEchHHHH-HHHhcCCCccCCeEEHHHHHH
Confidence 7999999988999999999764310 00134689999999976532 333321 122344679999
Q ss_pred hcccCCceEEEEEecceEEecCCHHHHHHHhHh-hhcccC-------------CCcceeCCCCceecCCccCCCeEE---
Q 044626 236 AAISIGMKVEAYLFDGYWEDMRSIEAFYHANME-CIKRSN-------------MRYNFYDRDCPVYTMPRCLPPTMI--- 298 (429)
Q Consensus 236 ~l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~-~l~~~~-------------~~~~~~~~~~~~~~~~~i~~~~~i--- 298 (429)
.++++|.++++|++.++|..++...+|+.+++. ++++.. +...++++...+++++.|+++++|
T Consensus 209 ~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~ 288 (481)
T PRK14358 209 LYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQ 288 (481)
T ss_pred HHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCC
Confidence 999988889999998888777777666666553 332210 111112222223333333333322
Q ss_pred ----------eeeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECC-cccccccccccCCccccCCcce
Q 044626 299 ----------REAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGA-DFYQQGEDIQSSGKCINHKAIP 366 (429)
Q Consensus 299 ----------~~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 366 (429)
.++.+.+++||++|.|++ +.+.+++||++|.||+++.+..+++++. ..++...+.+++. ....
T Consensus 289 v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~-----i~~~ 363 (481)
T PRK14358 289 TRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNAR-----LDAG 363 (481)
T ss_pred cEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCce-----ecCC
Confidence 223334455555555555 5555555555555555555544333332 2222222222222 1111
Q ss_pred eEeCCCCeecceEEecCcEECCCcEEecCCCCCCC-eeecCCeEEccCE-----EEEcCCCEeCCCccC
Q 044626 367 VGIGEDTQIKKAVIDKNARIGKNVLIINKDGVQEG-DREANGYIISEGI-----VVIIHGAEIADGSII 429 (429)
Q Consensus 367 ~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~-~~~~~~~~i~~~~-----~~i~~~~~i~~~~vv 429 (429)
+.+|+.+.+.+++||++|.||.++++.+..+...+ ..+|++++|++++ ++||++++|++||+|
T Consensus 364 ~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v 432 (481)
T PRK14358 364 VKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAV 432 (481)
T ss_pred cccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 45555566678999999999999999886555433 3566666666553 677778888888764
No 17
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=3.3e-43 Score=355.70 Aligned_cols=383 Identities=20% Similarity=0.244 Sum_probs=257.3
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
|+|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++++++++++.+.+.+++.+ ++ +
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~----~~------i 66 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN----RD------V 66 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC----CC------c
Confidence 8999999999999996 689999999999 99999999999999999999999998888888875 21 1
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccCCCCCC
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIRDKHPG 159 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~ 159 (429)
.+. .+. .+.|+++++++++++++. .++|++++||. +. ..++..++++|.+. .++++..+. +++..
T Consensus 67 ~~~--~~~-----~~~G~~~ai~~a~~~l~~--~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~--~~~~~ 133 (451)
T TIGR01173 67 NWV--LQA-----EQLGTGHAVLQALPFLPD--DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL--PDPTG 133 (451)
T ss_pred EEE--EcC-----CCCchHHHHHHHHHhcCC--CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec--CCCCC
Confidence 222 121 136999999999998853 26899999998 44 66789999988664 355555444 35667
Q ss_pred ccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCC---Ccccccccchh
Q 044626 160 FGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPE---ATDLGSEVIPA 236 (429)
Q Consensus 160 ~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~---~~~~~~d~l~~ 236 (429)
|+.+..|+++++..+.||+..... . ...+++++|+|+|+++.|.+++++.... .+.+..++++.
T Consensus 134 ~g~v~~d~~g~v~~~~ek~~~~~~----------~---~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~ 200 (451)
T TIGR01173 134 YGRIIRENDGKVTAIVEDKDANAE----------Q---KAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIAL 200 (451)
T ss_pred CCEEEEcCCCCEEEEEEcCCCChH----------H---hcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHH
Confidence 998888888899999998653210 0 0135789999999999976666653221 22345789999
Q ss_pred cccCCceEEEEEecce--EEecCCHHHHHHHhHhhhccc------------CCCcceeCCCCceecCC------------
Q 044626 237 AISIGMKVEAYLFDGY--WEDMRSIEAFYHANMECIKRS------------NMRYNFYDRDCPVYTMP------------ 290 (429)
Q Consensus 237 l~~~g~~i~~~~~~~~--~~~i~t~~~~~~an~~~l~~~------------~~~~~~~~~~~~~~~~~------------ 290 (429)
++++|.++++|+++++ |.++++|++|.+++..+..+. .+....+++.+.+++++
T Consensus 201 l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~ 280 (451)
T TIGR01173 201 AVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKV 280 (451)
T ss_pred HHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCce
Confidence 9988888999999887 999999999988876554321 01111222333333333
Q ss_pred ccCCCeEE-eeeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECC-cccccccccccCCccccCCccee
Q 044626 291 RCLPPTMI-REAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGA-DFYQQGEDIQSSGKCINHKAIPV 367 (429)
Q Consensus 291 ~i~~~~~i-~~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 367 (429)
.|++++.| .++.+.++.||++|.|++ +.+.+++||++|.||+++.|.+.+++++ ..+++....+++. .+..+
T Consensus 281 ~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~-----ig~~~ 355 (451)
T TIGR01173 281 KIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNAR-----IGKGS 355 (451)
T ss_pred EECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcE-----ECCCc
Confidence 33333333 234445566666666666 6666666666666666666654433332 2222222222111 01112
Q ss_pred EeCCCCeecceEEecCcEECCCcEEecCCCCCC-CeeecCCeEEccCE-----EEEcCCCEeCCCccC
Q 044626 368 GIGEDTQIKKAVIDKNARIGKNVLIINKDGVQE-GDREANGYIISEGI-----VVIIHGAEIADGSII 429 (429)
Q Consensus 368 ~ig~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~-~~~~~~~~~i~~~~-----~~i~~~~~i~~~~vv 429 (429)
.|++.+.+.++.||++|.||+++++.+..+..+ +..+|+++.||.++ ++||++++|++|++|
T Consensus 356 ~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v 423 (451)
T TIGR01173 356 KAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTV 423 (451)
T ss_pred EecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEE
Confidence 333444455678888888888888876544333 23445555555442 788889999998875
No 18
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.6e-42 Score=348.56 Aligned_cols=375 Identities=16% Similarity=0.188 Sum_probs=276.8
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
+|+|||||||.|+||++ .+||+|+|++|+ |||+|+++.|..+ ++++.|+++++.+++++++.+.+. .
T Consensus 2 ~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~~--------~ 68 (430)
T PRK14359 2 KLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYFP--------G 68 (430)
T ss_pred CccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcCC--------c
Confidence 47899999999999986 689999999999 9999999999886 789999999999999999876321 1
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eEeccHHHHHHHHHhcCCceEEEEEeccCCCCCC
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LYKMDYQRLIEAHRNNKADITIVALNAIRDKHPG 159 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~ 159 (429)
+.++.... ....|++++++.+.. . .++|++++||. +... ..++.+.+.++++++++.+.+ ++..
T Consensus 69 v~~~~~~~-----~~~~gt~~al~~~~~--~---~d~vlv~~gD~p~~~~---~~l~~l~~~~~~~~v~~~~~~--~~~~ 133 (430)
T PRK14359 69 VIFHTQDL-----ENYPGTGGALMGIEP--K---HERVLILNGDMPLVEK---DELEKLLENDADIVMSVFHLA--DPKG 133 (430)
T ss_pred eEEEEecC-----ccCCCcHHHHhhccc--C---CCeEEEEECCccCCCH---HHHHHHHhCCCCEEEEEEEcC--CCcc
Confidence 33332111 113699999987421 1 38999999998 3322 334445555677777665543 5677
Q ss_pred ccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCC---CCcccccccchh
Q 044626 160 FGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLP---EATDLGSEVIPA 236 (429)
Q Consensus 160 ~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~---~~~~~~~d~l~~ 236 (429)
|+.+..+ +|++..+.+++..... . ...++.++|+|+|++++|+++++.... ..+.+..|+++.
T Consensus 134 ~g~v~~d-~g~v~~i~e~~~~~~~-----------~--~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~ 199 (430)
T PRK14359 134 YGRVVIE-NGQVKKIVEQKDANEE-----------E--LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIAL 199 (430)
T ss_pred CcEEEEc-CCeEEEEEECCCCCcc-----------c--ccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHH
Confidence 8987764 6899999988643210 0 024578999999999999866554321 123455789999
Q ss_pred cccCCceEEEEEec-ceEEecCCHHHHHHHhHhhhcccC------------CCcceeCCCCceecCCccCCCeEE-eeeE
Q 044626 237 AISIGMKVEAYLFD-GYWEDMRSIEAFYHANMECIKRSN------------MRYNFYDRDCPVYTMPRCLPPTMI-REAV 302 (429)
Q Consensus 237 l~~~g~~i~~~~~~-~~~~~i~t~~~~~~an~~~l~~~~------------~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ 302 (429)
++++|.++.++..+ ++|.|+++|++|.+++..+..+.. ++..++++++.+...+.+++++.| +++.
T Consensus 200 l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~ 279 (430)
T PRK14359 200 AIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSK 279 (430)
T ss_pred HHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeE
Confidence 99888899999987 589999999999999876654321 223456677777777778888888 6777
Q ss_pred eeCeEECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEec
Q 044626 303 IRDSVVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDK 382 (429)
Q Consensus 303 i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~ 382 (429)
++++.||++|.|+++.+.+|+||++|.|+++++|+++.+..+ .+++++. .+ .+.||+++.|.+|+||+
T Consensus 280 i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~------~~i~~~~---~~---~~~i~~~~~i~d~~Ig~ 347 (430)
T PRK14359 280 IENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNF------VETKNAK---LN---GVKAGHLSYLGDCEIDE 347 (430)
T ss_pred EEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCc------EEEcccE---ec---cccccccccccCCEECC
Confidence 889999999999776778999999999999998876555443 2233322 11 16899999999999999
Q ss_pred CcEECCCcEEecCCCCCCC-eeecCCeEEccCE-----EEEcCCCEeCCCccC
Q 044626 383 NARIGKNVLIINKDGVQEG-DREANGYIISEGI-----VVIIHGAEIADGSII 429 (429)
Q Consensus 383 ~~~ig~~~~i~~~~~~~~~-~~~~~~~~i~~~~-----~~i~~~~~i~~~~vv 429 (429)
+|.||++++++++.+..+. ..+|++++||.++ ++||+++.|++|++|
T Consensus 348 ~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v 400 (430)
T PRK14359 348 GTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTV 400 (430)
T ss_pred CCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 9999999999887554432 3456666665552 788888888888875
No 19
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.4e-42 Score=351.19 Aligned_cols=386 Identities=15% Similarity=0.170 Sum_probs=260.3
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
++.|||||||.|+||+ ...||+|+|++|+ |||+|++++|...+++++++++++..+.+.+++.+. .
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----~------ 70 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE----D------ 70 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc----C------
Confidence 3679999999999997 5689999999999 999999999999999999999999888887776541 1
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccCCCCC
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIRDKHP 158 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~ 158 (429)
++++ .++ ++.|++++++.+++++++...++|++++||+ ++ ...+..+++.|+ +++++++..+.+ ++.
T Consensus 71 ~~~v--~~~-----~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~--~~~ 139 (456)
T PRK14356 71 ARFV--LQE-----QQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLP--DPG 139 (456)
T ss_pred ceEE--EcC-----CCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcC--CCC
Confidence 2232 221 1379999999999998754347899999999 44 666788888875 556666665543 567
Q ss_pred CccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCC---CCcccccccch
Q 044626 159 GFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLP---EATDLGSEVIP 235 (429)
Q Consensus 159 ~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~---~~~~~~~d~l~ 235 (429)
.||++.. ++|++..+.||+...... . ...+.++++|+|+|+++.|.++++.... ..+.+..++++
T Consensus 140 ~~g~v~~-~~g~V~~~~ek~~~~~~~---------~--~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~ 207 (456)
T PRK14356 140 AYGRVVR-RNGHVAAIVEAKDYDEAL---------H--GPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVG 207 (456)
T ss_pred CceEEEE-cCCeEEEEEECCCCChHH---------h--hhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHH
Confidence 8998866 578999999987532100 0 0024678999999999998766654321 22344578999
Q ss_pred hcccCCceEEEEEecc--eEEecCCHHHHHHHhHhhhcccC------------CCcceeCCCCceecCCc----------
Q 044626 236 AAISIGMKVEAYLFDG--YWEDMRSIEAFYHANMECIKRSN------------MRYNFYDRDCPVYTMPR---------- 291 (429)
Q Consensus 236 ~l~~~g~~i~~~~~~~--~~~~i~t~~~~~~an~~~l~~~~------------~~~~~~~~~~~~~~~~~---------- 291 (429)
.+++.|.++.++++.+ .|.+++||++|.+++..+..+.. +...++++++.+++++.
T Consensus 208 ~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~ 287 (456)
T PRK14356 208 LAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGA 287 (456)
T ss_pred HHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCc
Confidence 9888788899999865 67999999999999877665421 11223344444433333
Q ss_pred --cCCCeEE-eeeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECC-cccccccccccCCccccCCcce
Q 044626 292 --CLPPTMI-REAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGA-DFYQQGEDIQSSGKCINHKAIP 366 (429)
Q Consensus 292 --i~~~~~i-~~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 366 (429)
|++++.| +++.|.++.||++|+|++ +.+.+++||++|.||+++.|.++++++. ..++++.+.+++. ....
T Consensus 288 ~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~-----i~~~ 362 (456)
T PRK14356 288 SRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAV-----LGKG 362 (456)
T ss_pred eEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeE-----ecCC
Confidence 3333333 244455566666666666 6666666666666666666654433332 2233333333322 1111
Q ss_pred eEeCCCCeecceEEecCcEECCCcEEecCCC-------CCCCeeecCCeEEccCEEEEcCCCEeCCCccC
Q 044626 367 VGIGEDTQIKKAVIDKNARIGKNVLIINKDG-------VQEGDREANGYIISEGIVVIIHGAEIADGSII 429 (429)
Q Consensus 367 ~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~~-------~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~vv 429 (429)
+.++.++.+.+++||+++.||+++.+.+..+ ++++..+|.++.+.++ +.||+++.|++|++|
T Consensus 363 ~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~-~~ig~~~~i~~~~~v 431 (456)
T PRK14356 363 AKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAP-VTIGDGALVGAGSVI 431 (456)
T ss_pred cEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCC-cEECCCCEEcCCCEE
Confidence 3455555556677888888888877655432 2334444555555555 788889999998875
No 20
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.1e-42 Score=351.59 Aligned_cols=383 Identities=17% Similarity=0.239 Sum_probs=268.0
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
+|+|||||||.|+||+ ..+||+|+|++|+ |||+|+++.|..+|++++++++++..+++++++... .
T Consensus 5 ~~~aiIlAaG~gtRl~---~~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-~--------- 70 (456)
T PRK09451 5 AMSVVILAAGKGTRMY---SDLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE-P--------- 70 (456)
T ss_pred CceEEEEcCCCCCcCC---CCCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC-C---------
Confidence 4789999999999998 3689999999999 999999999999999999999998888888888641 1
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce--eEeccHHHHHHHHHhcCCceEEEEEeccCCCCC
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH--LYKMDYQRLIEAHRNNKADITIVALNAIRDKHP 158 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~--i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~ 158 (429)
+.++ .+. .+.|++++++.+++++.+ .++|++++||. +.+.++..++++|++.. +++++.+ .+++.
T Consensus 71 ~~~i--~~~-----~~~Gt~~al~~a~~~l~~--~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~--~~~~~ 137 (456)
T PRK09451 71 LNWV--LQA-----EQLGTGHAMQQAAPFFAD--DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVK--LDNPT 137 (456)
T ss_pred cEEE--ECC-----CCCCcHHHHHHHHHhhcc--CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEE--cCCCC
Confidence 2222 121 147999999999988853 37899999998 44778888888876543 3344433 34667
Q ss_pred CccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCC---CCcccccccch
Q 044626 159 GFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLP---EATDLGSEVIP 235 (429)
Q Consensus 159 ~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~---~~~~~~~d~l~ 235 (429)
.||++.. ++++|..|.|||..... ...++++++|+|+|+++.|.++++.... ..+.+..|+++
T Consensus 138 ~yG~v~~-~~g~V~~~~EKp~~~~~-------------~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~ 203 (456)
T PRK09451 138 GYGRITR-ENGKVVGIVEQKDATDE-------------QRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIA 203 (456)
T ss_pred CceEEEe-cCCeEEEEEECCCCChH-------------HhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHH
Confidence 8998744 57899999999853210 0024578999999999998777765422 13345689999
Q ss_pred hcccCCceEEEEE------ecce--EEecCCHHHHHHHhH--hhhccc----CC------------CcceeCCCCceecC
Q 044626 236 AAISIGMKVEAYL------FDGY--WEDMRSIEAFYHANM--ECIKRS----NM------------RYNFYDRDCPVYTM 289 (429)
Q Consensus 236 ~l~~~g~~i~~~~------~~~~--~~~i~t~~~~~~an~--~~l~~~----~~------------~~~~~~~~~~~~~~ 289 (429)
.++++|.++..|. +.|+ |.+++++++|+++|+ .++... .+ +...+++++.+..+
T Consensus 204 ~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~ 283 (456)
T PRK09451 204 LAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGN 283 (456)
T ss_pred HHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEcCCeEEecC
Confidence 9999888999986 3555 778999999999884 232211 11 12244455555555
Q ss_pred CccCCCeEE-eeeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECC-cccccccccccCCccccCCcce
Q 044626 290 PRCLPPTMI-REAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGA-DFYQQGEDIQSSGKCINHKAIP 366 (429)
Q Consensus 290 ~~i~~~~~i-~~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 366 (429)
+.|++++.| .++.+.++.||++|.|++ +.+.+++||++|.||+++.|...+.+++ ..++.....+.+. .+..
T Consensus 284 v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~-----i~~~ 358 (456)
T PRK09451 284 VTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKAR-----LGKG 358 (456)
T ss_pred cEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeecee-----eCCC
Confidence 556666666 466677788888888888 7777778888888887777764444433 2222222222111 1111
Q ss_pred eEeCCCCeecceEEecCcEECCCcEEecCCCCCC-CeeecCCeEEccCE-----EEEcCCCEeCCCccC
Q 044626 367 VGIGEDTQIKKAVIDKNARIGKNVLIINKDGVQE-GDREANGYIISEGI-----VVIIHGAEIADGSII 429 (429)
Q Consensus 367 ~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~-~~~~~~~~~i~~~~-----~~i~~~~~i~~~~vv 429 (429)
+.++..+.+.+|.||++|.||+++++.+..+..+ ++++|++++||.++ +.|+++++|++||+|
T Consensus 359 ~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v 427 (456)
T PRK09451 359 SKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTV 427 (456)
T ss_pred CccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEE
Confidence 3455555567788999999999998887654333 34556666665552 677888888888765
No 21
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.9e-42 Score=347.98 Aligned_cols=382 Identities=17% Similarity=0.199 Sum_probs=254.2
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
++.|||||||.|+||++ ..||+|+|++|+ |||+|++++|..++++++++++++..+.+.+++.+.. .+
T Consensus 5 ~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~----~~---- 72 (446)
T PRK14353 5 TCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKIA----PD---- 72 (446)
T ss_pred cceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhccC----CC----
Confidence 46899999999999984 579999999999 9999999999999999999999998888888886521 11
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccCCCCC
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIRDKHP 158 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~ 158 (429)
+.+. .+. ++.|++++++.++++++.. .++|++++||. ++ ...+..+++.+ +.+++++++..+. +++.
T Consensus 73 ~~~~--~~~-----~~~G~~~sl~~a~~~l~~~-~~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~--~~~~ 141 (446)
T PRK14353 73 AEIF--VQK-----ERLGTAHAVLAAREALAGG-YGDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRA--ADPT 141 (446)
T ss_pred ceEE--EcC-----CCCCcHHHHHHHHHHHhcc-CCCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEe--CCCC
Confidence 1121 121 1379999999999888522 27899999998 55 55577788744 4456666665443 3567
Q ss_pred CccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCC---CCcccccccch
Q 044626 159 GFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLP---EATDLGSEVIP 235 (429)
Q Consensus 159 ~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~---~~~~~~~d~l~ 235 (429)
.|+.+.. +++++..+.|||..... ...+.+.++|+|+|+++.|.+++++... ....+..++++
T Consensus 142 ~~g~~~~-~~g~v~~~~ek~~~~~~-------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~ 207 (446)
T PRK14353 142 GYGRLIV-KGGRLVAIVEEKDASDE-------------ERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVA 207 (446)
T ss_pred cceEEEE-CCCeEEEEEECCCCChH-------------HhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHH
Confidence 8888777 57899999998753210 0023578999999999887667765422 12234578899
Q ss_pred hcccCCceEEEEEec-ceEEecCCHHHHHHHhHhhhccc-----------C-CCcceeCCCCceecCCccCCCeEEeeeE
Q 044626 236 AAISIGMKVEAYLFD-GYWEDMRSIEAFYHANMECIKRS-----------N-MRYNFYDRDCPVYTMPRCLPPTMIREAV 302 (429)
Q Consensus 236 ~l~~~g~~i~~~~~~-~~~~~i~t~~~~~~an~~~l~~~-----------~-~~~~~~~~~~~~~~~~~i~~~~~i~~~~ 302 (429)
.++++|.++..++.+ +.|.++++|++|.+++..+..+. . +...++++.+.|++++.|+|+++|.
T Consensus 208 ~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~--- 284 (446)
T PRK14353 208 IARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFG--- 284 (446)
T ss_pred HHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEEC---
Confidence 999888889999986 57999999999999986553321 1 1112344455555555555555543
Q ss_pred eeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECC-cccccccccccCCccccCCcceeEeCCCCeecceEE
Q 044626 303 IRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGA-DFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVI 380 (429)
Q Consensus 303 i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i 380 (429)
+++.||++|.|++ +.+.+++||++|+||+++.|...++++. ..++++....++. .+..+.|++++.+.+++|
T Consensus 285 -~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~-----i~~~~~i~~~~~i~~~~i 358 (446)
T PRK14353 285 -PGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAK-----LGEGAKVNHLTYIGDATI 358 (446)
T ss_pred -CCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceE-----ECCCCEECCeeEEcCcEE
Confidence 3455555555555 5555555555555555555543222222 1122211111111 000155666667777888
Q ss_pred ecCcEECCCcEEecCC-------CCCCCeeecCCeEEccCEEEEcCCCEeCCCccC
Q 044626 381 DKNARIGKNVLIINKD-------GVQEGDREANGYIISEGIVVIIHGAEIADGSII 429 (429)
Q Consensus 381 g~~~~ig~~~~i~~~~-------~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~vv 429 (429)
|++|.||.++++.+.. .++++..+|.+++|.++ +.||++++|++|++|
T Consensus 359 g~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~-~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 359 GAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP-VTIGDGAYIASGSVI 413 (446)
T ss_pred cCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCC-CEECCCCEECCCCEE
Confidence 9999999988875543 33444455555555555 778888888888864
No 22
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-42 Score=333.55 Aligned_cols=380 Identities=18% Similarity=0.296 Sum_probs=283.1
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
.+|||+||...-+||.|+|...|++|||++|. |||+|+|++|..+|++++++.+..+..++.+|+.+.. |.+..+..
T Consensus 24 rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~se--w~~~~~~~ 100 (673)
T KOG1461|consen 24 RLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSE--WYLPMSFI 100 (673)
T ss_pred ceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhcc--ccccccce
Confidence 36999999999999999999999999999999 9999999999999999999999999999999998742 44433322
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhc-----CCceEEEEEeccCC
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNN-----KADITIVALNAIRD 155 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~-----~~~~ti~~~~~~~~ 155 (429)
+..+... .....+++++..-+. +...++|++++||++.+.+|+++++.||++ ++.||+++.+....
T Consensus 101 v~ti~s~-------~~~S~GDamR~id~k--~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~ 171 (673)
T KOG1461|consen 101 VVTICSG-------ESRSVGDAMRDIDEK--QLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTR 171 (673)
T ss_pred EEEEcCC-------CcCcHHHHHHHHHhc--ceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccc
Confidence 2222111 125677787765431 122489999999999999999999999663 46689988776422
Q ss_pred CCCCccEEEEcC-CCCEEEEEecCcccccccccCCCCC-CCCCCCCCCcceeeEEEEcHHHHHHHHHhhCC--CCccccc
Q 044626 156 KHPGFGLLRVNP-VNQVIEFSMKSERETITSISGKSSR-KSDSVASGNFPSMGIYLINRDTMSRLLKEYLP--EATDLGS 231 (429)
Q Consensus 156 ~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~--~~~~~~~ 231 (429)
...+.-++.+|. +.+++.|.+-........+.++... ......++++.+++|.+|+++++. ++.++++ ...+|.+
T Consensus 172 ~~~~~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~s-LF~dNFDyq~r~DfV~ 250 (673)
T KOG1461|consen 172 ETTEQVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLS-LFTDNFDYQTRDDFVR 250 (673)
T ss_pred cCCcceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHH-Hhhhcccceehhhhhh
Confidence 222333455664 5688888762111111112221111 112234789999999999999997 7776654 4556666
Q ss_pred ccchhcccCCceEEEEEecc--eEEecCCHHHHHHHhHhhhcccCC----CcceeC-CCCcee-cCCccCCCeEE-eeeE
Q 044626 232 EVIPAAISIGMKVEAYLFDG--YWEDMRSIEAFYHANMECIKRSNM----RYNFYD-RDCPVY-TMPRCLPPTMI-REAV 302 (429)
Q Consensus 232 d~l~~l~~~g~~i~~~~~~~--~~~~i~t~~~~~~an~~~l~~~~~----~~~~~~-~~~~~~-~~~~i~~~~~i-~~~~ 302 (429)
.+|-.-+- |++|+++..+. |..++.+++.|...+++++++... ...+.+ ...... .+.+-+|.+++ ..+.
T Consensus 251 GvL~~dil-g~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~ 329 (673)
T KOG1461|consen 251 GVLVDDIL-GYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVI 329 (673)
T ss_pred hhhhhhhc-CCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCccceehhhcc
Confidence 65554343 68999998865 889999999999999999988742 222211 111111 11223344444 2333
Q ss_pred e-eCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEE
Q 044626 303 I-RDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVI 380 (429)
Q Consensus 303 i-~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i 380 (429)
+ .++.||.++.||. +.|.||+||+||+||.+++|.++.++.+ |+||+||+|.+|+|
T Consensus 330 v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~----------------------v~Igdnc~I~~aii 387 (673)
T KOG1461|consen 330 VGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN----------------------VTIGDNCRIDHAII 387 (673)
T ss_pred ccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC----------------------cEECCCceEeeeEe
Confidence 3 5889999999999 9999999999999999999999999998 99999999999999
Q ss_pred ecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCCccC
Q 044626 381 DKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADGSII 429 (429)
Q Consensus 381 g~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~vv 429 (429)
|++|.|+++|++. +||++|.+ |++|++..++++++|
T Consensus 388 ~d~v~i~~~~~l~------------~g~vl~~~-VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 388 CDDVKIGEGAILK------------PGSVLGFG-VVVGRNFVLPKNSKV 423 (673)
T ss_pred ecCcEeCCCcccC------------CCcEEeee-eEeCCCccccccccc
Confidence 9999999999998 88999999 899999999998764
No 23
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=7.6e-41 Score=338.91 Aligned_cols=385 Identities=21% Similarity=0.236 Sum_probs=259.0
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
+++|||||||.|+||+ ..+||+|+|++|+ |||+|+|++|.++|+++++++++++.+++.+++.+..
T Consensus 2 ~~~avIlAaG~g~Rl~---~~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~~---------- 67 (458)
T PRK14354 2 NRYAIILAAGKGTRMK---SKLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDRS---------- 67 (458)
T ss_pred CceEEEEeCCCCcccC---CCCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCCc----------
Confidence 4789999999999998 3689999999999 9999999999999999999999999888888876421
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccCCCCC
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIRDKHP 158 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~ 158 (429)
.+. .+. +++|++++++++++++++. .+.|++++||. ++ ..++.++++.|++.+++.++++... +++.
T Consensus 68 -~~~--~~~-----~~~g~~~al~~a~~~l~~~-~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~--~~~~ 136 (458)
T PRK14354 68 -EFA--LQE-----EQLGTGHAVMQAEEFLADK-EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIA--ENPT 136 (458)
T ss_pred -EEE--EcC-----CCCCHHHHHHHHHHHhccc-CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEc--CCCC
Confidence 122 111 1379999999999988632 26799999997 44 7778999999988778887776554 3567
Q ss_pred CccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCC---Ccccccccch
Q 044626 159 GFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPE---ATDLGSEVIP 235 (429)
Q Consensus 159 ~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~---~~~~~~d~l~ 235 (429)
.|+.+..|+++++..+.+|+..... ....++.++|+|+|+++.|.+.+++.... ...+..++++
T Consensus 137 ~~g~v~~d~~~~V~~~~ek~~~~~~-------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~ 203 (458)
T PRK14354 137 GYGRIIRNENGEVEKIVEQKDATEE-------------EKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIE 203 (458)
T ss_pred CceEEEEcCCCCEEEEEECCCCChH-------------HhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHH
Confidence 7888888888899999998642100 00245789999999998765566553221 2233568888
Q ss_pred hcccCCceEEEEEecce--EEecCCHHHHHHHhHhhhcccC------------CCcceeCCCCceecCCccCCCeEEe--
Q 044626 236 AAISIGMKVEAYLFDGY--WEDMRSIEAFYHANMECIKRSN------------MRYNFYDRDCPVYTMPRCLPPTMIR-- 299 (429)
Q Consensus 236 ~l~~~g~~i~~~~~~~~--~~~i~t~~~~~~an~~~l~~~~------------~~~~~~~~~~~~~~~~~i~~~~~i~-- 299 (429)
.+++++.++++|+++++ |+++++++||..|+..+..+.. +...++++.+.+++++.+++++.+.
T Consensus 204 ~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~ 283 (458)
T PRK14354 204 ILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGN 283 (458)
T ss_pred HHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecc
Confidence 88887788999999865 5678899999988765432221 1123344445555555544444442
Q ss_pred -----------eeEeeCeEECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEECC-cccccccccccCCccccCCccee
Q 044626 300 -----------EAVIRDSVVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGA-DFYQQGEDIQSSGKCINHKAIPV 367 (429)
Q Consensus 300 -----------~~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 367 (429)
++.|.++.||++|.|+++.+.+++||++|.||++|.|...++++. ..++++..++++. .+..+
T Consensus 284 ~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~-----i~~~~ 358 (458)
T PRK14354 284 TVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKST-----IGEGT 358 (458)
T ss_pred eEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeE-----ECCCC
Confidence 233344455555555544445566666666666666664333332 2233333332211 11114
Q ss_pred EeCCCCeecceEEecCcEECCCcEEecCCC-------CCCCeeecCCeEEccCEEEEcCCCEeCCCccC
Q 044626 368 GIGEDTQIKKAVIDKNARIGKNVLIINKDG-------VQEGDREANGYIISEGIVVIIHGAEIADGSII 429 (429)
Q Consensus 368 ~ig~~~~i~~~~ig~~~~ig~~~~i~~~~~-------~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~vv 429 (429)
.|++.+.+.+++||++|.||+++.+.+..+ +++++.+|.++.+..+ +.||+++.|++|++|
T Consensus 359 ~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~-~~ig~~~~v~~~~~v 426 (458)
T PRK14354 359 KVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAP-VTVGDNAYIAAGSTI 426 (458)
T ss_pred EecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCC-cEECCCCEECCCCEE
Confidence 455555556777888888888887766432 2344444555555555 788888888888875
No 24
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-42 Score=315.98 Aligned_cols=344 Identities=19% Similarity=0.312 Sum_probs=246.1
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecC-hhHHHHHHhccccCcccCCC-
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFN-STSLNLHLSRAFSGILRGKD- 78 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~-~~~i~~~l~~~~~~~~~~~~- 78 (429)
++||||+|||.||||..++...|||||||+|+ |||+|+|++|.++||++|.|++... ...++..|.+.+. +++.
T Consensus 9 efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~---l~~~~ 84 (433)
T KOG1462|consen 9 EFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNID---LKKRP 84 (433)
T ss_pred HhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCc---ccccc
Confidence 47899999999999999999999999999999 9999999999999999999999763 4567777766533 3332
Q ss_pred CcEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccC----
Q 044626 79 GFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIR---- 154 (429)
Q Consensus 79 ~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~---- 154 (429)
.++++-...++ -.||+++|+.....++ +++||++.||.+++.++..+++.||..++...+++.....
T Consensus 85 ~~v~ip~~~~~------d~gtadsLr~Iy~kik---S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~ 155 (433)
T KOG1462|consen 85 DYVEIPTDDNS------DFGTADSLRYIYSKIK---SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPI 155 (433)
T ss_pred cEEEeeccccc------ccCCHHHHhhhhhhhc---cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccc
Confidence 23443322221 1799999999988887 2699999999999999999999999888766555443211
Q ss_pred -----CCCCCccEEEEcCCC-CEEEEEecCcccccccccCCCCC-CCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCc
Q 044626 155 -----DKHPGFGLLRVNPVN-QVIEFSMKSERETITSISGKSSR-KSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEAT 227 (429)
Q Consensus 155 -----~~~~~~g~v~~d~~~-~v~~~~ek~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 227 (429)
+..+.+.++.++++. ++.......+....+.+.+-..+ ...+.+.++|.++++|+|+.++++ +|.+. ++..
T Consensus 156 pgqk~k~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d-~l~~~-~sis 233 (433)
T KOG1462|consen 156 PGQKGKKKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVID-LLSEK-ESIS 233 (433)
T ss_pred cCcccccccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHH-HHhcC-Ccce
Confidence 112334455555544 33333222222222222221111 112334788999999999999997 66543 3556
Q ss_pred ccccccchhcccCCc--------------------------------eEEEEEe--cceEEecCCHHHHHHHhHh-hhcc
Q 044626 228 DLGSEVIPAAISIGM--------------------------------KVEAYLF--DGYWEDMRSIEAFYHANME-CIKR 272 (429)
Q Consensus 228 ~~~~d~l~~l~~~g~--------------------------------~i~~~~~--~~~~~~i~t~~~~~~an~~-~l~~ 272 (429)
+|..+++|.|++.++ ++++|.. +..+.+++|+-.|+++|+. ++.+
T Consensus 234 Sfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~ 313 (433)
T KOG1462|consen 234 SFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLKK 313 (433)
T ss_pred eecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHHH
Confidence 777888888875432 3344443 3578899999999999952 2222
Q ss_pred cCCCcceeCCCCceecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCccccccc
Q 044626 273 SNMRYNFYDRDCPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGE 351 (429)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~ 351 (429)
..+...++.... ..- +.+. .++.||++|.|+. +.++.|+||.+|.||++++|.+|++|.+
T Consensus 314 l~~e~~~~k~~~-------~~~-~l~g----~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~n------- 374 (433)
T KOG1462|consen 314 LCSEAKFVKNYV-------KKV-ALVG----ADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDN------- 374 (433)
T ss_pred hccccccccchh-------hhe-eccc----hhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecC-------
Confidence 212111111000 000 1111 4789999999998 9999999999999999999999999998
Q ss_pred ccccCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEe
Q 044626 352 DIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLII 393 (429)
Q Consensus 352 ~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~ 393 (429)
+.||+++.|++|+||++++||++|.+.
T Consensus 375 ---------------V~vg~G~~IensIIg~gA~Ig~gs~L~ 401 (433)
T KOG1462|consen 375 ---------------VVVGDGVNIENSIIGMGAQIGSGSKLK 401 (433)
T ss_pred ---------------cEecCCcceecceecccceecCCCeee
Confidence 899999999999999999999999995
No 25
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2e-41 Score=301.48 Aligned_cols=236 Identities=19% Similarity=0.294 Sum_probs=208.5
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecC-hhHHHHHHhccccCcccCCCCc
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFN-STSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~-~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
|+|||||||.||||+|+|...||+|+||.+| |||+|+|+.|..+||++|.|+++++ ...+++++.++.. |+.+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~-~gv~---- 74 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSD-FGVD---- 74 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcCccc-cCcc----
Confidence 8999999999999999999999999999999 9999999999999999999999985 5667777877655 5544
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCc
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGF 160 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~ 160 (429)
+.+..|+. +.|-|+|+..+++++.+ ++|+++.||.++..+++++++.+.+..+..++++..+. +|.+|
T Consensus 75 --itY~~Q~~-----p~GlA~Av~~a~~fv~~---~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~--dP~rf 142 (286)
T COG1209 75 --ITYAVQPE-----PDGLAHAVLIAEDFVGD---DDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD--DPSRY 142 (286)
T ss_pred --eEEEecCC-----CCcHHHHHHHHHhhcCC---CceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC--Ccccc
Confidence 66777753 68999999999999985 99999999998855999999998888888999988876 89999
Q ss_pred cEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCC-cc-cccccchhcc
Q 044626 161 GLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEA-TD-LGSEVIPAAI 238 (429)
Q Consensus 161 g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~-~~-~~~d~l~~l~ 238 (429)
|++++|++++++++.|||..| .|+++.+|+|+|++++|+ +++...++. .+ -++|+++.++
T Consensus 143 GV~e~d~~~~v~~l~EKP~~P-----------------~SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGElEITd~i~~~i 204 (286)
T COG1209 143 GVVEFDEDGKVIGLEEKPKEP-----------------KSNLAVTGLYFYDPSVFE-AIKQIKPSARGELEITDAIDLYI 204 (286)
T ss_pred eEEEEcCCCcEEEeEECCCCC-----------------CCceeEEEEEEeChHHHH-HHHcCCCCCCCceEehHHHHHHH
Confidence 999999999999999999988 689999999999999997 777654432 33 3589999999
Q ss_pred cCCceEEEEEecceEEecCCHHHHHHHhHhhhccc
Q 044626 239 SIGMKVEAYLFDGYWEDMRSIEAFYHANMECIKRS 273 (429)
Q Consensus 239 ~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~~~ 273 (429)
++|..+......|.|.|.+|+++|.+|++.++...
T Consensus 205 ~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~~~ 239 (286)
T COG1209 205 EKGYLVVAILIRGWWLDTGTPESLLEANNFVRTVS 239 (286)
T ss_pred HcCcEEEEEEccceEEecCChhhHHHHHHHHHHHH
Confidence 99999988889999999999999999999988643
No 26
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=7.6e-40 Score=330.87 Aligned_cols=383 Identities=17% Similarity=0.238 Sum_probs=257.4
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
+|.+||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|++++++++++..+.+.+++.+...
T Consensus 1 ~~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~~--------- 67 (450)
T PRK14360 1 MLAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLPG--------- 67 (450)
T ss_pred CceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccCC---------
Confidence 36799999999999985 689999999999 99999999999999999999999988888888865211
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce--eEeccHHHHHHHHHhcCCceEEEEEeccCCCCC
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH--LYKMDYQRLIEAHRNNKADITIVALNAIRDKHP 158 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~--i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~ 158 (429)
+.++. +. ++.|++++++.+++++++. .+++++++||. +...++..+++.|++.+++++++..+. +++.
T Consensus 68 i~~v~--~~-----~~~G~~~sv~~~~~~l~~~-~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~--~~~~ 137 (450)
T PRK14360 68 LEFVE--QQ-----PQLGTGHAVQQLLPVLKGF-EGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL--PNPK 137 (450)
T ss_pred eEEEE--eC-----CcCCcHHHHHHHHHHhhcc-CCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec--CCCC
Confidence 22332 21 1369999999999888642 26799999999 447788999999988888877765543 3567
Q ss_pred CccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCC---Ccccccccch
Q 044626 159 GFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPE---ATDLGSEVIP 235 (429)
Q Consensus 159 ~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~---~~~~~~d~l~ 235 (429)
.||.+..|+++++..+.||+..... + ..++++++|+|+|+++.|.+++++.... .+.+.+|.++
T Consensus 138 ~~g~~~~d~~g~v~~~~ek~~~~~~----------~---~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~ 204 (450)
T PRK14360 138 GYGRVFCDGNNLVEQIVEDRDCTPA----------Q---RQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVS 204 (450)
T ss_pred CccEEEECCCCCEEEEEECCCCChh----------H---hcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHHH
Confidence 7999989888999999999752100 0 0356899999999999887777654322 2334566777
Q ss_pred hcccCCceEEEEEecce--EEecCCHHHHHHHhHhhhcccC-----CCcceeCC-------C------------CceecC
Q 044626 236 AAISIGMKVEAYLFDGY--WEDMRSIEAFYHANMECIKRSN-----MRYNFYDR-------D------------CPVYTM 289 (429)
Q Consensus 236 ~l~~~g~~i~~~~~~~~--~~~i~t~~~~~~an~~~l~~~~-----~~~~~~~~-------~------------~~~~~~ 289 (429)
.+.+ +..+.+.++ |..+++++++..+...+..... +...++++ . +.+..+
T Consensus 205 ~~~~----~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~ 280 (450)
T PRK14360 205 LLDP----VMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGN 280 (450)
T ss_pred HHhh----ceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCCEEeCC
Confidence 6632 445555554 5669999999887665432110 00112222 2 222223
Q ss_pred CccCCCeEE-eeeEeeCeEECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEEC-CcccccccccccCCccccCCccee
Q 044626 290 PRCLPPTMI-REAVIRDSVVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMG-ADFYQQGEDIQSSGKCINHKAIPV 367 (429)
Q Consensus 290 ~~i~~~~~i-~~~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 367 (429)
+.+++++.| .++.|.++.||++|.|+.+.+.+++||++|.||++|.|.++++++ +..++++...+++. .+..+
T Consensus 281 ~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~-----i~~~~ 355 (450)
T PRK14360 281 TVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQ-----LGEGS 355 (450)
T ss_pred cEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccc-----cCCCc
Confidence 333444444 344455566666666644555677777788888888776543333 33333333333222 11114
Q ss_pred EeCCCCeecceEEecCcEECCCcEEecCC-------CCCCCeeecCCeEEccCEEEEcCCCEeCCCccC
Q 044626 368 GIGEDTQIKKAVIDKNARIGKNVLIINKD-------GVQEGDREANGYIISEGIVVIIHGAEIADGSII 429 (429)
Q Consensus 368 ~ig~~~~i~~~~ig~~~~ig~~~~i~~~~-------~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~vv 429 (429)
.|++++.+.++.||++|.||+++.+.+.. .++++..+|.++.|.++ ++||+++.|++|++|
T Consensus 356 ~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~-~~ig~~~~v~~~~~v 423 (450)
T PRK14360 356 KVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAP-ITLGEDVTVAAGSTI 423 (450)
T ss_pred EeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCC-cEECCCCEECCCCEE
Confidence 45555556667899999999998887633 33444555555555556 788888888888865
No 27
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.6e-40 Score=331.56 Aligned_cols=373 Identities=19% Similarity=0.218 Sum_probs=242.0
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
|+|||||||.|+||++ .+||+|+|++|+ |||+|+|++|.+.+ ++|+|++++..+.+.+++.+. +
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~~-----------~ 64 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPEW-----------V 64 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhcccc-----------c
Confidence 8999999999999984 689999999999 99999999999875 899999998888888877642 1
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce--eEeccHHHHHHHHHhcCCceEEEEEeccCCCCCC
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH--LYKMDYQRLIEAHRNNKADITIVALNAIRDKHPG 159 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~--i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~ 159 (429)
.+. .+. .++|++++++++++++.. .++|++++||. +...+++++++.|+++++++++++.+.. ++..
T Consensus 65 ~~~--~~~-----~~~g~~~ai~~a~~~l~~--~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~--~~~~ 133 (448)
T PRK14357 65 KIF--LQE-----EQLGTAHAVMCARDFIEP--GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE--DPTG 133 (448)
T ss_pred EEE--ecC-----CCCChHHHHHHHHHhcCc--CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC--CCCC
Confidence 122 121 147999999999998853 37999999998 4477889999999888889988876654 5778
Q ss_pred ccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCC---Ccccccccchh
Q 044626 160 FGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPE---ATDLGSEVIPA 236 (429)
Q Consensus 160 ~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~---~~~~~~d~l~~ 236 (429)
||.+..+ ++++ .+.||+..+... ...++.++|+|+|+++.|.++++..... ...+..|+++.
T Consensus 134 ~g~v~~d-~g~v-~~~e~~~~~~~~-------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~ 198 (448)
T PRK14357 134 YGRIIRD-GGKY-RIVEDKDAPEEE-------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNF 198 (448)
T ss_pred cEEEEEc-CCeE-EEEECCCCChHH-------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHh
Confidence 9998776 6777 777765432100 0235789999999999987666643221 22234577766
Q ss_pred cccCCceEEEEEecce--EEecCCHHHHHHHhHhhhcc----c-------C-CCcceeCCCCceecCCccCCCeEEeeeE
Q 044626 237 AISIGMKVEAYLFDGY--WEDMRSIEAFYHANMECIKR----S-------N-MRYNFYDRDCPVYTMPRCLPPTMIREAV 302 (429)
Q Consensus 237 l~~~g~~i~~~~~~~~--~~~i~t~~~~~~an~~~l~~----~-------~-~~~~~~~~~~~~~~~~~i~~~~~i~~~~ 302 (429)
+ .++..|...++ |.+++++++|..+...+.+. . . +...++++.+.|+.++.|+|+++|.
T Consensus 199 ~----~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~--- 271 (448)
T PRK14357 199 A----EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIE--- 271 (448)
T ss_pred h----hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEE---
Confidence 6 24788888887 67777999988776554321 0 1 1123455666666666666665553
Q ss_pred eeCeEECCCcEEcc-eEeeCcEEcCC----------------cEECCCCEEecCeEECC-cccccccccccCCccccCCc
Q 044626 303 IRDSVVGDGCIINR-CKIKGTVIGMR----------------TRIGDGAVIEDSVIMGA-DFYQQGEDIQSSGKCINHKA 364 (429)
Q Consensus 303 i~~~~ig~~~~i~~-~~v~~~~ig~~----------------~~ig~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 364 (429)
+++.||++|+|++ |.+.+|+||++ +.||+++.|..+++++. ..++.+...+++. .+
T Consensus 272 -~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~-----ig 345 (448)
T PRK14357 272 -GKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKST-----IG 345 (448)
T ss_pred -eeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccE-----Ec
Confidence 3445555555555 44444444444 44444444433222222 1111111111111 00
Q ss_pred ceeEeCCCCeecceEEecCcEECCCcEEecCCCCCC-CeeecCCeEEccCE-----EEEcCCCEeCCCccC
Q 044626 365 IPVGIGEDTQIKKAVIDKNARIGKNVLIINKDGVQE-GDREANGYIISEGI-----VVIIHGAEIADGSII 429 (429)
Q Consensus 365 ~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~-~~~~~~~~~i~~~~-----~~i~~~~~i~~~~vv 429 (429)
..+.+++.+.+.+++||++|.||+++++.+..+..+ +.++|++++|+.++ ++||+++.|++|++|
T Consensus 346 ~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 346 ENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred CCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 002222333345677888888888877765443332 24455555555442 688888888888765
No 28
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=4.7e-38 Score=292.91 Aligned_cols=241 Identities=28% Similarity=0.491 Sum_probs=198.2
Q ss_pred EEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEE-eecChhHHHHHHhccccCcccCCCCcE
Q 044626 3 AAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYAL-TQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 3 ~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv-~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
||||||||.||||+|+|..+||||+|++|+||||+|+|++|..+|+++++++ ++++.+++.+|+++.+. ++ +
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~~-~~------~ 73 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGYK-FG------V 73 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSGG-GT------E
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeeccccccccccccccc-cc------c
Confidence 6999999999999999999999999999988999999999999999995555 45778889999998654 23 3
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCC-CCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCc
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYP-VTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGF 160 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~-~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~ 160 (429)
++.+..+.. +.||+++++++++.+.... .++|++++||++++.++.++++.|+++++++++.+...+.++++.|
T Consensus 74 ~i~~i~~~~-----~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (248)
T PF00483_consen 74 KIEYIVQPE-----PLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRY 148 (248)
T ss_dssp EEEEEEESS-----SSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGS
T ss_pred cceeeeccc-----ccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccccccc
Confidence 344444431 3699999999999998521 2359999999999999999999999998855444444445568899
Q ss_pred cEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHH--hhCCCCcccccccchhcc
Q 044626 161 GLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLK--EYLPEATDLGSEVIPAAI 238 (429)
Q Consensus 161 g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~--~~~~~~~~~~~d~l~~l~ 238 (429)
|++.+|++++|..+.|||..+. .+.++++|+|+|++++|..+++ .......++..|+++.++
T Consensus 149 g~v~~d~~~~V~~~~EKP~~~~----------------~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~ 212 (248)
T PF00483_consen 149 GVVEVDEDGRVIRIVEKPDNPN----------------ASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLL 212 (248)
T ss_dssp EEEEEETTSEEEEEEESCSSHS----------------HSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHH
T ss_pred eeeeeccceeEEEEeccCcccc----------------cceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHH
Confidence 9999999899999999988651 1678999999999999986644 222345667789999999
Q ss_pred cCCceEEEEEecc--eEEecCCHHHHHHHhHhhhc
Q 044626 239 SIGMKVEAYLFDG--YWEDMRSIEAFYHANMECIK 271 (429)
Q Consensus 239 ~~g~~i~~~~~~~--~~~~i~t~~~~~~an~~~l~ 271 (429)
+++..+..+..++ +|.|++||++|++||+.+++
T Consensus 213 ~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 213 EQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 9988888889988 79999999999999999875
No 29
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=3.1e-37 Score=291.64 Aligned_cols=243 Identities=14% Similarity=0.206 Sum_probs=190.9
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcc------
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGIL------ 74 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~------ 74 (429)
+|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+|+++|+|++++..+++.+|+...+...+
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~ 81 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRV 81 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHHhc
Confidence 59999999999999999999999999999999 99999999999999999999999999999999965321000
Q ss_pred --------cCC-CCcEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEe--------ccHHHHHHH
Q 044626 75 --------RGK-DGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYK--------MDYQRLIEA 137 (429)
Q Consensus 75 --------~~~-~~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~--------~~l~~~~~~ 137 (429)
.+. ...+.+.+..|. +++||+++++++++++++ ++|++++||++++ .++++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~q~-----~~lGtg~Av~~a~~~l~~---~~flvv~gD~l~~~~~~~~~~~~l~~li~~ 153 (297)
T TIGR01105 82 KRQLLAEVQSICPPGVTIMNVRQA-----QPLGLGHSILCARPVVGD---NPFVVVLPDIIIDDATADPLRYNLAAMIAR 153 (297)
T ss_pred chhhhhhhhhcCCCCceEEEeeCC-----CcCchHHHHHHHHHHhCC---CCEEEEECCeeccccccccchhHHHHHHHH
Confidence 000 012334444442 468999999999999963 7899999999885 488999999
Q ss_pred HHhcCCceEEEEEeccCCCCCCccEEEEc----CCCC---EEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEE
Q 044626 138 HRNNKADITIVALNAIRDKHPGFGLLRVN----PVNQ---VIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLI 210 (429)
Q Consensus 138 ~~~~~~~~ti~~~~~~~~~~~~~g~v~~d----~~~~---v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~ 210 (429)
|.++++.++++ ...+ +++..||++.++ ++|+ |.++.|||..+.. ..++++++|+|+|
T Consensus 154 ~~~~~~~~~~~-~~~~-~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~--------------~~s~~~~~GiYi~ 217 (297)
T TIGR01105 154 FNETGRSQVLA-KRMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT--------------LDSDLMAVGRYVL 217 (297)
T ss_pred HHHhCCcEEEE-EEcC-CCCccceEEEecccccCCCCeeeEeEEEECCCCccc--------------CCcCEEEEEEEEE
Confidence 98777666443 3333 358899999984 4565 5888899864310 1367999999999
Q ss_pred cHHHHHHHHHhhCCC--CcccccccchhcccCCceEEEEEecceEEecCCHHHHHHHhHhhh
Q 044626 211 NRDTMSRLLKEYLPE--ATDLGSEVIPAAISIGMKVEAYLFDGYWEDMRSIEAFYHANMECI 270 (429)
Q Consensus 211 ~~~~l~~~l~~~~~~--~~~~~~d~l~~l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l 270 (429)
++++|. .++...++ .+...+|+++.++++ .+++++.++|+|+|+++|++|++||..+.
T Consensus 218 ~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~~-~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 218 SADIWA-ELERTEPGAWGRIQLTDAIAELAKK-QSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred CHHHHH-HHhcCCCCCCCeeeHHHHHHHHHhc-CCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 999987 55543221 223357899999986 58999999999999999999999988864
No 30
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=7.2e-37 Score=286.19 Aligned_cols=235 Identities=17% Similarity=0.295 Sum_probs=194.2
Q ss_pred EEEEcCC--CCCCcccccccccccccccCCcchhHHHHHHhhHh-cCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 4 AVVFGDG--SESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCIN-SNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 4 avIla~G--~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~-~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
||||||| .|+||+|+|..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+++.+|+.+....++
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~------ 73 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFN------ 73 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccC------
Confidence 6999999 8999999999999999999999 999999999999 69999999999999999999976422122
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCc
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGF 160 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~ 160 (429)
+.+.+..+. .++||+++++.++++++....++|+|++||++++.+++.++++|+++++++|+++.+.+.+++..|
T Consensus 74 ~~i~~~~~~-----~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~y 148 (257)
T cd06428 74 VPIRYLQEY-----KPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNY 148 (257)
T ss_pred ceEEEecCC-----ccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccc
Confidence 223333332 147999999999999864334789999999999999999999999999999988877655567899
Q ss_pred cEEEEc-CCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCC--------------
Q 044626 161 GLLRVN-PVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPE-------------- 225 (429)
Q Consensus 161 g~v~~d-~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~-------------- 225 (429)
|++.+| ++++|..+.|||..+ .+.++++|+|+|++++|+ .+.+..+.
T Consensus 149 g~v~~d~~~g~v~~~~Ekp~~~-----------------~~~~~~~Giyi~~~~~~~-~i~~~~~~~~~e~~~~~~~~~~ 210 (257)
T cd06428 149 GCIVEDPSTGEVLHYVEKPETF-----------------VSDLINCGVYLFSPEIFD-TIKKAFQSRQQEAQLGDDNNRE 210 (257)
T ss_pred cEEEEeCCCCeEEEEEeCCCCc-----------------ccceEEEEEEEECHHHHH-HHhhhccccccccccccccccc
Confidence 999988 678999999997643 356899999999999986 44432111
Q ss_pred ----CcccccccchhcccCCceEEEEEecceEEecCCHHHHHHHhHhh
Q 044626 226 ----ATDLGSEVIPAAISIGMKVEAYLFDGYWEDMRSIEAFYHANMEC 269 (429)
Q Consensus 226 ----~~~~~~d~l~~l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~ 269 (429)
..++..|+++.++++ .++++|+++|+|.||+|+++|+++|+.+
T Consensus 211 ~~~~~~~~~~d~~~~l~~~-~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 211 GRAEVIRLEQDVLTPLAGS-GKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred cccceeeehhhhhhHHhcc-CCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 123447899999987 5899999999999999999999999863
No 31
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=2e-36 Score=279.16 Aligned_cols=232 Identities=16% Similarity=0.286 Sum_probs=194.5
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|..+|+++|+|+++++.+++.+|+.+..... .+
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~~~------~~ 73 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKL------GI 73 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccccC------Ce
Confidence 8999999999999999999999999999999 9999999999999999999999999999999998521111 23
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCcc
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGFG 161 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g 161 (429)
++.+..+. .+.|++++++.++++++.. .++|++++||++++.++++++++|+++++++++++.+.+ ++..||
T Consensus 74 ~i~~~~~~-----~~~G~~~al~~a~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g 145 (233)
T cd06425 74 KITFSIET-----EPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVE--DPSKYG 145 (233)
T ss_pred EEEeccCC-----CCCccHHHHHHHHHHhccC-CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcC--CccccC
Confidence 34443221 1479999999999988642 267999999999999999999999999999988877653 467899
Q ss_pred EEEEcC-CCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchhcccC
Q 044626 162 LLRVNP-VNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPAAISI 240 (429)
Q Consensus 162 ~v~~d~-~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~l~~~ 240 (429)
++.+|+ +++|.++.|||..+ .++++++|+|+|++++|+ .+.. ...+...++++.++++
T Consensus 146 ~v~~d~~~~~v~~~~ekp~~~-----------------~~~~~~~Giyi~~~~~l~-~l~~---~~~~~~~~~~~~l~~~ 204 (233)
T cd06425 146 VVVHDENTGRIERFVEKPKVF-----------------VGNKINAGIYILNPSVLD-RIPL---RPTSIEKEIFPKMASE 204 (233)
T ss_pred eEEEcCCCCEEEEEEECCCCC-----------------CCCEEEEEEEEECHHHHH-hccc---CcccchhhhHHHHHhc
Confidence 999987 78999999997643 357889999999999996 4432 2334456899999887
Q ss_pred CceEEEEEecceEEecCCHHHHHHHhHhhh
Q 044626 241 GMKVEAYLFDGYWEDMRSIEAFYHANMECI 270 (429)
Q Consensus 241 g~~i~~~~~~~~~~~i~t~~~~~~an~~~l 270 (429)
.++.+|+++++|.|++||++|++|++.+|
T Consensus 205 -~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 205 -GQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred -CCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 58999999999999999999999998875
No 32
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=5.6e-36 Score=282.43 Aligned_cols=234 Identities=17% Similarity=0.248 Sum_probs=191.6
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeec-ChhHHHHHHhccccCcccCCCC
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQF-NSTSLNLHLSRAFSGILRGKDG 79 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~-~~~~i~~~l~~~~~~~~~~~~~ 79 (429)
+|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+|+++|+|++.+ ..+.+++++.+... |+++
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~g~~-~g~~--- 77 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQ-WGLN--- 77 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcCccc-cCce---
Confidence 48999999999999999999999999999999 999999999999999999987654 46778999977544 5554
Q ss_pred cEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeE-eccHHHHHHHHHhcCCceEEEEEeccCCCCC
Q 044626 80 FVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLY-KMDYQRLIEAHRNNKADITIVALNAIRDKHP 158 (429)
Q Consensus 80 ~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~ 158 (429)
+.+..|. .++|+++++..+++++.+ +++++++||.++ ..+++++++.|.++++++|+++..++ ++.
T Consensus 78 ---i~y~~q~-----~~~Gta~Al~~a~~~i~~---~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~--~p~ 144 (292)
T PRK15480 78 ---LQYKVQP-----SPDGLAQAFIIGEEFIGG---DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVN--DPE 144 (292)
T ss_pred ---eEEEECC-----CCCCHHHHHHHHHHHhCC---CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcC--Ccc
Confidence 3333442 158999999999999963 568889999865 88999999999888888888776653 678
Q ss_pred CccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCC-Cc-ccccccchh
Q 044626 159 GFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPE-AT-DLGSEVIPA 236 (429)
Q Consensus 159 ~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~-~~-~~~~d~l~~ 236 (429)
.||++.+|++|+|.++.|||..+ .++++++|+|+|++++++ .++...++ .. ...+|+++.
T Consensus 145 ~yGvv~~d~~g~v~~i~EKP~~p-----------------~s~~a~~GiY~~~~~v~~-~~~~~~~~~~ge~~itd~~~~ 206 (292)
T PRK15480 145 RYGVVEFDQNGTAISLEEKPLQP-----------------KSNYAVTGLYFYDNDVVE-MAKNLKPSARGELEITDINRI 206 (292)
T ss_pred cCcEEEECCCCcEEEEEECCCCC-----------------CCCEEEEEEEEEChHHHH-HHhhcCCCCCCeeEhHHHHHH
Confidence 99999999889999999998654 577999999999999886 55543222 12 224789999
Q ss_pred cccCCceEEEEEecc-eEEecCCHHHHHHHhHhhh
Q 044626 237 AISIGMKVEAYLFDG-YWEDMRSIEAFYHANMECI 270 (429)
Q Consensus 237 l~~~g~~i~~~~~~~-~~~~i~t~~~~~~an~~~l 270 (429)
++++|.....+...+ .|.|++||++|.+|+..+.
T Consensus 207 ~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 207 YMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred HHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 998875444556677 5999999999999999876
No 33
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=9.1e-36 Score=282.43 Aligned_cols=245 Identities=14% Similarity=0.220 Sum_probs=192.7
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCc-------
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGI------- 73 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~------- 73 (429)
+|+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|++++..+++.+|+...+...
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~ 81 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRV 81 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcc
Confidence 58999999999999999999999999999999 9999999999999999999999999999999997432100
Q ss_pred ---cc----C-CCCcEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEe--------ccHHHHHHH
Q 044626 74 ---LR----G-KDGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYK--------MDYQRLIEA 137 (429)
Q Consensus 74 ---~~----~-~~~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~--------~~l~~~~~~ 137 (429)
++ . ....+.+.+..|.. ++||+++++++++++.+ ++|++++||++++ .++.++++.
T Consensus 82 k~~~l~~~~~~~~~~~~i~~~~q~~-----~lGtg~al~~a~~~l~~---~~fvvi~gD~l~~~~~~~~~~~dl~~li~~ 153 (297)
T PRK10122 82 KRQLLAEVQSICPPGVTIMNVRQGQ-----PLGLGHSILCARPAIGD---NPFVVVLPDVVIDDASADPLRYNLAAMIAR 153 (297)
T ss_pred hhhhHHhhhhccCCCceEEEeecCC-----cCchHHHHHHHHHHcCC---CCEEEEECCeeccCccccccchhHHHHHHH
Confidence 00 0 00123455555531 58999999999999853 7899999999875 479999999
Q ss_pred HHhcCCceEEEEEeccCCCCCCccEEEEc----CCC---CEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEE
Q 044626 138 HRNNKADITIVALNAIRDKHPGFGLLRVN----PVN---QVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLI 210 (429)
Q Consensus 138 ~~~~~~~~ti~~~~~~~~~~~~~g~v~~d----~~~---~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~ 210 (429)
|.+.+++++++ .... +++..||++.++ +++ +|..+.|||..+.. ..++++++|+|+|
T Consensus 154 h~~~~~~~~~~-~~~~-~~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~--------------~~s~~~~~GiYi~ 217 (297)
T PRK10122 154 FNETGRSQVLA-KRMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT--------------LDSDLMAVGRYVL 217 (297)
T ss_pred HHHhCCcEEEE-EECC-CCCCCceEEEecCcccCCCCeeeEEEEEECCCCccc--------------CCccEEEEEEEEE
Confidence 98877765443 3333 378899999986 355 67889999864310 1367899999999
Q ss_pred cHHHHHHHHHhhCCC--CcccccccchhcccCCceEEEEEecceEEecCCHHHHHHHhHhh-hcc
Q 044626 211 NRDTMSRLLKEYLPE--ATDLGSEVIPAAISIGMKVEAYLFDGYWEDMRSIEAFYHANMEC-IKR 272 (429)
Q Consensus 211 ~~~~l~~~l~~~~~~--~~~~~~d~l~~l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~-l~~ 272 (429)
++++|.. +....+. ...+.+|+++.++++ .++.+|.++|+|+|+++|++|++|+..+ ++.
T Consensus 218 ~~~i~~~-l~~~~~~~~~e~~ltd~i~~l~~~-~~v~~~~~~G~w~DiG~p~~~~~a~~~~~~~~ 280 (297)
T PRK10122 218 SADIWPE-LERTEPGAWGRIQLTDAIAELAKK-QSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRN 280 (297)
T ss_pred CHHHHHH-HHhCCCCCCCeeeHHHHHHHHHhC-CCEEEEEeCCEEEcCCCHHHHHHHHHHHHhcC
Confidence 9999874 4432222 234457899999987 5899999999999999999999999998 543
No 34
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=5.9e-35 Score=270.60 Aligned_cols=232 Identities=17% Similarity=0.262 Sum_probs=188.2
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecC-hhHHHHHHhccccCcccCCCCc
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFN-STSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~-~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|+|+++.++|+++|++++++. .+++.+|+..... |+++
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~~~-~~~~---- 74 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGSD-LGIR---- 74 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhcccc-cCce----
Confidence 8999999999999999999999999999998 9999999999999999999988754 5789999976433 4432
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeE-eccHHHHHHHHHhcCCceEEEEEeccCCCCCC
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLY-KMDYQRLIEAHRNNKADITIVALNAIRDKHPG 159 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~ 159 (429)
+.+..+. .+.|++++++.++++++. ++|++++||.++ +.++.++++.|+++++++++++.+.+ ++..
T Consensus 75 --i~~~~~~-----~~~G~~~al~~a~~~~~~---~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 142 (240)
T cd02538 75 --ITYAVQP-----KPGGLAQAFIIGEEFIGD---DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN--DPER 142 (240)
T ss_pred --EEEeeCC-----CCCCHHHHHHHHHHhcCC---CCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC--chhc
Confidence 4333332 147999999999998863 789999999865 77899999999888888888776654 4678
Q ss_pred ccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCC-C-Ccccccccchhc
Q 044626 160 FGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLP-E-ATDLGSEVIPAA 237 (429)
Q Consensus 160 ~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~-~-~~~~~~d~l~~l 237 (429)
||++.+|++|+|..+.|||..+ .++++++|+|+|++++|+ .+++... . ......++++.+
T Consensus 143 ~g~v~~d~~g~v~~~~ekp~~~-----------------~~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~~~~l 204 (240)
T cd02538 143 YGVVEFDENGRVLSIEEKPKKP-----------------KSNYAVTGLYFYDNDVFE-IAKQLKPSARGELEITDVNNEY 204 (240)
T ss_pred CceEEecCCCcEEEEEECCCCC-----------------CCCeEEEEEEEECHHHHH-HHHhcCCCCCCeEEhHHHHHHH
Confidence 9999999889999999997643 356889999999999885 6664322 1 222346899999
Q ss_pred ccCCceEEEEEec--ceEEecCCHHHHHHHhHhhh
Q 044626 238 ISIGMKVEAYLFD--GYWEDMRSIEAFYHANMECI 270 (429)
Q Consensus 238 ~~~g~~i~~~~~~--~~~~~i~t~~~~~~an~~~l 270 (429)
+++| ++.++.++ ++|.||+||++|+++|+.+.
T Consensus 205 ~~~g-~~~~~~~~~~g~w~digt~~~~~~a~~~~~ 238 (240)
T cd02538 205 LEKG-KLSVELLGRGFAWLDTGTHESLLEASNFVQ 238 (240)
T ss_pred HHhC-CeEEEEeCCCcEEEeCCCHHHHHHHHHHHh
Confidence 8875 56666665 99999999999999998653
No 35
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=7.4e-35 Score=274.50 Aligned_cols=231 Identities=16% Similarity=0.281 Sum_probs=188.4
Q ss_pred EEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEee-cChhHHHHHHhccccCcccCCCCcE
Q 044626 3 AAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQ-FNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 3 ~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~-~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
+|||||||.||||+|+|..+||+|+||+|+ |||+|+|+.|..+|+++|+|+++ +..+.+++++.+... |+++
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~g~~-~g~~----- 73 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQ-WGVN----- 73 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhccccc-cCce-----
Confidence 589999999999999999999999999999 99999999999999999998775 556788889876443 5543
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCcee-EeccHHHHHHHHHhcCCceEEEEEeccCCCCCCc
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHL-YKMDYQRLIEAHRNNKADITIVALNAIRDKHPGF 160 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i-~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~ 160 (429)
+.+..|.. ++|++++++.+++++.+ +++++++||.+ ++.++.++++.|.+.++++++++.+++ ++..|
T Consensus 74 -i~~~~q~~-----~~Gta~al~~a~~~l~~---~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~--~p~~y 142 (286)
T TIGR01207 74 -LSYAVQPS-----PDGLAQAFIIGEDFIGG---DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS--DPERY 142 (286)
T ss_pred -EEEEEccC-----CCCHHHHHHHHHHHhCC---CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc--CHHHC
Confidence 44444421 58999999999999963 77888899985 488999999999888888888876654 67899
Q ss_pred cEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCC-Cc-ccccccchhcc
Q 044626 161 GLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPE-AT-DLGSEVIPAAI 238 (429)
Q Consensus 161 g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~-~~-~~~~d~l~~l~ 238 (429)
|++.+|++|+|.++.|||..+ .++++++|+|+|++++++ .++...++ .. ...+|+++.++
T Consensus 143 Gvv~~d~~g~V~~i~EKp~~~-----------------~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~eitdv~~~~l 204 (286)
T TIGR01207 143 GVVEFDSNGRAISIEEKPAQP-----------------KSNYAVTGLYFYDNRVVE-IARQLKPSARGELEITDLNRVYL 204 (286)
T ss_pred ceEEECCCCeEEEEEECCCCC-----------------CCCEEEEEEEEEchHHHH-HHhhcCCCCCCcEeHHHHHHHHH
Confidence 999999889999999998654 467899999999999876 66543221 22 23468999999
Q ss_pred cCCceEEEEEe-cce-EEecCCHHHHHHHhHhhh
Q 044626 239 SIGMKVEAYLF-DGY-WEDMRSIEAFYHANMECI 270 (429)
Q Consensus 239 ~~g~~i~~~~~-~~~-~~~i~t~~~~~~an~~~l 270 (429)
++| ++.++.+ .++ |.|++||++|++|+..+.
T Consensus 205 ~~g-~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 205 EEG-RLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred HcC-CcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 876 3455444 565 999999999999988765
No 36
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=4.3e-34 Score=264.20 Aligned_cols=234 Identities=18% Similarity=0.288 Sum_probs=193.4
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++|+|++++..+.+.+++.+... |+.+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~-~~~~----- 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSR-FGVR----- 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchhh-cCCe-----
Confidence 8999999999999999999999999999999 99999999999999999999999988999999987543 3332
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCcc
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGFG 161 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g 161 (429)
+....+. ++.|++++++.+++++.. ++|++++||++++.++.++++.|..+++++++++.+.+ ++..|+
T Consensus 74 -i~~~~~~-----~~~g~~~sl~~a~~~i~~---~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g 142 (236)
T cd04189 74 -ITYILQE-----EPLGLAHAVLAARDFLGD---EPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVE--DPRRFG 142 (236)
T ss_pred -EEEEECC-----CCCChHHHHHHHHHhcCC---CCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECC--Ccccce
Confidence 2222222 247999999999998862 78999999999999999999999988888888776653 467788
Q ss_pred EEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCC--Ccccccccchhccc
Q 044626 162 LLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPE--ATDLGSEVIPAAIS 239 (429)
Q Consensus 162 ~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~--~~~~~~d~l~~l~~ 239 (429)
++.+|+ ++|..+.+||..+ .+.+.++|+|+|++++|+ .++...+. ......++++.+++
T Consensus 143 ~~~~d~-~~v~~~~ek~~~~-----------------~~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~d~~~~~i~ 203 (236)
T cd04189 143 VAVVDD-GRIVRLVEKPKEP-----------------PSNLALVGVYAFTPAIFD-AISRLKPSWRGELEITDAIQWLID 203 (236)
T ss_pred EEEEcC-CeEEEEEECCCCC-----------------CCCEEEEEEEEeCHHHHH-HHHhcCCCCCCeEEHHHHHHHHHH
Confidence 888874 5999999987533 346789999999999986 44432221 12334689999998
Q ss_pred CCceEEEEEecceEEecCCHHHHHHHhHhhhcc
Q 044626 240 IGMKVEAYLFDGYWEDMRSIEAFYHANMECIKR 272 (429)
Q Consensus 240 ~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~~ 272 (429)
+|.++.+++++++|.+++||++|.++++.++++
T Consensus 204 ~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~~ 236 (236)
T cd04189 204 RGRRVGYSIVTGWWKDTGTPEDLLEANRLLLDK 236 (236)
T ss_pred cCCcEEEEEcCceEEeCCCHHHHHHHHHHHHhC
Confidence 888899999999999999999999999998863
No 37
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=3e-34 Score=270.09 Aligned_cols=242 Identities=20% Similarity=0.292 Sum_probs=189.9
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCccc--CC--
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILR--GK-- 77 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~--~~-- 77 (429)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+.+.+. +.. +.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~-~~~~~~~~~ 78 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYE-LEETLEKKG 78 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHH-HHHHHHhcc
Confidence 8999999999999999999999999999999 99999999999999999999999999999999976432 100 00
Q ss_pred -----------CCcEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEec---cHHHHHHHHHhcCC
Q 044626 78 -----------DGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKM---DYQRLIEAHRNNKA 143 (429)
Q Consensus 78 -----------~~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~---~l~~~~~~~~~~~~ 143 (429)
...+++.+..+ ++++|++++++++++++++ ++|++++||.++.. +++++++.|++.++
T Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~-----~~~~Gt~~al~~~~~~i~~---~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~ 150 (267)
T cd02541 79 KTDLLEEVRIISDLANIHYVRQ-----KEPLGLGHAVLCAKPFIGD---EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA 150 (267)
T ss_pred cHHHhhhhhcccCCceEEEEEc-----CCCCChHHHHHHHHHHhCC---CceEEEECCeEEeCCchHHHHHHHHHHHhCC
Confidence 00122333333 2358999999999999863 78999999997743 58999999987666
Q ss_pred ceEEEEEeccCCCCCCccEEEEcC----CCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHH
Q 044626 144 DITIVALNAIRDKHPGFGLLRVNP----VNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLL 219 (429)
Q Consensus 144 ~~ti~~~~~~~~~~~~~g~v~~d~----~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l 219 (429)
++ +++...+.+++..||++.+|+ .++|..+.|||.... ..+.++++|+|+|++++|.. +
T Consensus 151 ~~-~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~---------------~~~~~~~~Giyi~~~~~~~~-l 213 (267)
T cd02541 151 SV-IAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEE---------------APSNLAIVGRYVLTPDIFDI-L 213 (267)
T ss_pred CE-EEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCC---------------CCCceEEEEEEEcCHHHHHH-H
Confidence 54 554555545678899999885 248999999975321 03568899999999999874 4
Q ss_pred HhhCC--CCcccccccchhcccCCceEEEEEecceEEecCCHHHHHHHhHhhhc
Q 044626 220 KEYLP--EATDLGSEVIPAAISIGMKVEAYLFDGYWEDMRSIEAFYHANMECIK 271 (429)
Q Consensus 220 ~~~~~--~~~~~~~d~l~~l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~ 271 (429)
.+... ....+..++++.+++++ ++++|+++++|.|++||++|+++|+.+.-
T Consensus 214 ~~~~~~~~~e~~~~d~i~~l~~~~-~v~~~~~~g~w~digt~~~y~~a~~~~~~ 266 (267)
T cd02541 214 ENTKPGKGGEIQLTDAIAKLLEEE-PVYAYVFEGKRYDCGNKLGYLKATVEFAL 266 (267)
T ss_pred HhCCCCCCCcEEHHHHHHHHHhcC-CEEEEEeeeEEEeCCCHHHHHHHHHHHhc
Confidence 43211 12334568899999885 89999999999999999999999998753
No 38
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=4.7e-34 Score=266.09 Aligned_cols=234 Identities=18% Similarity=0.258 Sum_probs=190.0
Q ss_pred EEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhcccc---CcccCC-C
Q 044626 3 AAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFS---GILRGK-D 78 (429)
Q Consensus 3 ~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~---~~~~~~-~ 78 (429)
+|||||||.|+||+|+|..+||||+||+|+ |||+|+++.|.++|+++|+|+++++.+++.+|+.+... .+.... .
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 99999999999999999999999999999999975321 011100 0
Q ss_pred Cc----------EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEE
Q 044626 79 GF----------VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIV 148 (429)
Q Consensus 79 ~~----------v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~ 148 (429)
.. ..+.+..+. .++||+++++++++++. .++|++++||++++.++++++++|.+.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-----~~~gt~~al~~~~~~i~---~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~ 151 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVDTG-----ESTQTGGRLKRVREYLD---DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVT 151 (254)
T ss_pred cccccccccCCccceeeeecC-----CcCCcHHHHHHHHHhcC---CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEE
Confidence 00 001111111 14799999999999886 2789999999999999999999999988988876
Q ss_pred EEeccCCCCCCccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcc
Q 044626 149 ALNAIRDKHPGFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATD 228 (429)
Q Consensus 149 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~ 228 (429)
... ++..||.+.+|+ ++|..|.|||.. .+.++++|+|+|++++|+ .+++ ...+
T Consensus 152 ~~~----~~~~yG~v~~d~-~~V~~~~Ekp~~------------------~~~~i~~Giyi~~~~il~-~l~~---~~~~ 204 (254)
T TIGR02623 152 AVQ----PPGRFGALDLEG-EQVTSFQEKPLG------------------DGGWINGGFFVLNPSVLD-LIDG---DATV 204 (254)
T ss_pred Eec----CCCcccEEEECC-CeEEEEEeCCCC------------------CCCeEEEEEEEEcHHHHh-hccc---cCch
Confidence 532 467899998874 689999998743 245789999999999985 6653 2346
Q ss_pred cccccchhcccCCceEEEEEecceEEecCCHHHHHHHhHhhhccc
Q 044626 229 LGSEVIPAAISIGMKVEAYLFDGYWEDMRSIEAFYHANMECIKRS 273 (429)
Q Consensus 229 ~~~d~l~~l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~~~ 273 (429)
+..|+++.+++++ ++.+|.++|+|.||+||++|.+++..+.+..
T Consensus 205 ~~~d~i~~l~~~~-~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 205 WEQEPLETLAQRG-ELSAYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred hhhhHHHHHHhCC-CEEEEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 6789999999985 7999999999999999999999999888755
No 39
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=1.7e-33 Score=267.27 Aligned_cols=239 Identities=20% Similarity=0.278 Sum_probs=191.0
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcc--cCC--
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGIL--RGK-- 77 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~--~~~-- 77 (429)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+|++|.++|+++|+|+++++.+++.+|+...+. |+ ++.
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~-~~~~l~~~~ 86 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFE-LEAMLEKRV 86 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchh-hhhhhhhhh
Confidence 7899999999999999999999999999999 99999999999999999999999999999999976432 22 100
Q ss_pred ------------CCcEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEe--------ccHHHHHHH
Q 044626 78 ------------DGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYK--------MDYQRLIEA 137 (429)
Q Consensus 78 ------------~~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~--------~~l~~~~~~ 137 (429)
.+...+.+..|. .+.|++++++++++++.+ ++|++++||++++ .++.+++++
T Consensus 87 ~~~~~~e~~~i~~~~~~i~~~~q~-----~~~Gtg~Av~~a~~~~~~---~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~ 158 (302)
T PRK13389 87 KRQLLDEVQSICPPHVTIMQVRQG-----LAKGLGHAVLCAHPVVGD---EPVAVILPDVILDEYESDLSQDNLAEMIRR 158 (302)
T ss_pred hhHHHHhhhhccccCceEEEeecC-----CCCChHHHHHHHHHHcCC---CCEEEEeCcceecccccccccccHHHHHHH
Confidence 001123333332 258999999999988753 7899999999874 789999999
Q ss_pred HHhcCCceEEEEEeccCCCCCCccEEEEcC-------CCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEE
Q 044626 138 HRNNKADITIVALNAIRDKHPGFGLLRVNP-------VNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLI 210 (429)
Q Consensus 138 ~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~-------~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~ 210 (429)
|++++++ ++++.+. +++..||++..++ +++|..+.|||.... ..++++++|+|+|
T Consensus 159 h~~~~~~-tl~~~~~--~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~---------------~~s~~~~~GiYi~ 220 (302)
T PRK13389 159 FDETGHS-QIMVEPV--ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADV---------------APSNLAIVGRYVL 220 (302)
T ss_pred HHhcCCC-EEEEEEc--ccCCcceEEEecCcccccCCcceEEEEEECCCCCC---------------CCccEEEEEEEEE
Confidence 9887776 5655554 4678899998763 347999999986321 0357899999999
Q ss_pred cHHHHHHHHHhhCC--CCcccccccchhcccCCceEEEEEecceEEecCCHHHHHHHhHhhh
Q 044626 211 NRDTMSRLLKEYLP--EATDLGSEVIPAAISIGMKVEAYLFDGYWEDMRSIEAFYHANMECI 270 (429)
Q Consensus 211 ~~~~l~~~l~~~~~--~~~~~~~d~l~~l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l 270 (429)
++++|+ .++.... ..+.+.+|+++.++++ .++.+|.++|+|.|++||++|++|+..+-
T Consensus 221 ~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~~-~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 221 SADIWP-LLAKTPPGAGDEIQLTDAIDMLIEK-ETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred CHHHHH-HHHhCCCCCCCeeeHHHHHHHHHHc-CCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 999985 6765322 2334568999999987 58999999999999999999999999874
No 40
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=1.4e-33 Score=264.65 Aligned_cols=237 Identities=17% Similarity=0.241 Sum_probs=184.9
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcc-------
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGIL------- 74 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~------- 74 (429)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|+|+++.++|+++|+|+++++.+++.+|+.+.+. +.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~-~~~~~~~~~ 78 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYE-LEHQLEKRG 78 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHH-HHHHHHhhh
Confidence 8999999999999999999999999999999 99999999999999999999999999999999975321 10
Q ss_pred ----cC----CCCcEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeE-ec--cHHHHHHHHHhcCC
Q 044626 75 ----RG----KDGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLY-KM--DYQRLIEAHRNNKA 143 (429)
Q Consensus 75 ----~~----~~~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~-~~--~l~~~~~~~~~~~~ 143 (429)
++ ......+.+..+ .++.|++++++.+++++. .++|++++||+++ .. ++++++++|+++++
T Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~-----~~~~G~~~al~~~~~~~~---~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~ 150 (260)
T TIGR01099 79 KEELLKEVRSISPLATIFYVRQ-----KEQKGLGHAVLCAEPFVG---DEPFAVILGDDIVVSEEPALKQMIDLYEKYGC 150 (260)
T ss_pred hHHHHHHhhhccccceEEEEec-----CCCCCHHHHHHHHHHhhC---CCCEEEEeccceecCCcHHHHHHHHHHHHhCC
Confidence 00 000122322222 135899999999999884 3889999999977 43 79999999998888
Q ss_pred ceEEEEEeccCCCCCCccEEEEcC----CCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHH
Q 044626 144 DITIVALNAIRDKHPGFGLLRVNP----VNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLL 219 (429)
Q Consensus 144 ~~ti~~~~~~~~~~~~~g~v~~d~----~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l 219 (429)
++ +++...+.+++..||++.+|+ +++|..+.|||.... ..++++++|+|+|++++|..+.
T Consensus 151 ~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~---------------~~~~~~~~Giyi~~~~~~~~l~ 214 (260)
T TIGR01099 151 SI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEE---------------APSNLAIVGRYVLTPDIFDLLE 214 (260)
T ss_pred CE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCC---------------CCCceEEEEEEECCHHHHHHHH
Confidence 76 445555545678899998862 368999999984221 0356889999999999987544
Q ss_pred HhhCC-CCcccccccchhcccCCceEEEEEecceEEecCCHHHHHHH
Q 044626 220 KEYLP-EATDLGSEVIPAAISIGMKVEAYLFDGYWEDMRSIEAFYHA 265 (429)
Q Consensus 220 ~~~~~-~~~~~~~d~l~~l~~~g~~i~~~~~~~~~~~i~t~~~~~~a 265 (429)
+.... ....+..|+++.++++ .++++|+++|+|.||+||++|++|
T Consensus 215 ~~~~~~~~~~~l~d~i~~l~~~-~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 215 ETPPGAGGEIQLTDALRKLLEK-ETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred hCCCCCCCceeHHHHHHHHHhc-CCEEEEEcceEEEeCCCHHHHhhC
Confidence 32211 1233456889999987 589999999999999999999875
No 41
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=2.9e-33 Score=256.05 Aligned_cols=219 Identities=18% Similarity=0.280 Sum_probs=179.6
Q ss_pred EEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcEE
Q 044626 3 AAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVE 82 (429)
Q Consensus 3 ~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~ 82 (429)
+|||||||.|+||+|+|..+||||+|++|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+ .. |++ .
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~-~~~------~ 71 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD-SR-FGL------R 71 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc-cc-CCc------e
Confidence 589999999999999999999999999999 99999999999999999999999999999999986 22 443 2
Q ss_pred EEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHh--cCCceEEEEEeccCCCCCCc
Q 044626 83 VIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRN--NKADITIVALNAIRDKHPGF 160 (429)
Q Consensus 83 i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~--~~~~~ti~~~~~~~~~~~~~ 160 (429)
+.+..+.. ++.|++++++.+++++.+ ++|++++||++++.++.++++.|++ .++.+++...+. +++..|
T Consensus 72 i~~~~~~~----~~~g~~~~l~~~~~~~~~---~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 142 (221)
T cd06422 72 ITISDEPD----ELLETGGGIKKALPLLGD---EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRN--PGHNGV 142 (221)
T ss_pred EEEecCCC----cccccHHHHHHHHHhcCC---CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEc--CCCCCc
Confidence 44333320 247999999999998863 7899999999999999999999984 455555554333 356788
Q ss_pred cEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchhcccC
Q 044626 161 GLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPAAISI 240 (429)
Q Consensus 161 g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~l~~~ 240 (429)
|.+.+|++++|..+.+++. ..+.++|+|+|+++.|..+.+ ......++++.++++
T Consensus 143 g~v~~d~~~~v~~~~~~~~--------------------~~~~~~Giyi~~~~~l~~l~~-----~~~~~~d~~~~l~~~ 197 (221)
T cd06422 143 GDFSLDADGRLRRGGGGAV--------------------APFTFTGIQILSPELFAGIPP-----GKFSLNPLWDRAIAA 197 (221)
T ss_pred ceEEECCCCcEeecccCCC--------------------CceEEEEEEEEcHHHHhhCCc-----CcccHHHHHHHHHHc
Confidence 9999998899999988763 257899999999998874332 123346899999887
Q ss_pred CceEEEEEecceEEecCCHHHHHHH
Q 044626 241 GMKVEAYLFDGYWEDMRSIEAFYHA 265 (429)
Q Consensus 241 g~~i~~~~~~~~~~~i~t~~~~~~a 265 (429)
.++.+|.++++|.|++||++|.+|
T Consensus 198 -~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 198 -GRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred -CCeEEEecCCEEEcCCCHHHHhhC
Confidence 478899999999999999999875
No 42
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=1.5e-32 Score=256.41 Aligned_cols=238 Identities=16% Similarity=0.225 Sum_probs=188.9
Q ss_pred EEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccC---cccCC-CC
Q 044626 4 AVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSG---ILRGK-DG 79 (429)
Q Consensus 4 avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~---~~~~~-~~ 79 (429)
|||||||.|+||+|+|..+||||+||+|+ |||+|+++.+..+|+++|+|+++++.+++.+|+.+.... +.... .+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999999 999999999999999999999999999999999874321 21111 01
Q ss_pred cEEEEeccccc-----cccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccC
Q 044626 80 FVEVIAAYQSL-----EDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIR 154 (429)
Q Consensus 80 ~v~i~~~~~~~-----~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~ 154 (429)
.+.+....... ..+..+.|++++++++++++.. .++|++++||++++.++.++++.|...++++++++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~--~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~--- 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD--DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH--- 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC--CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec---
Confidence 11111110000 0000136899999999998852 1789999999999999999999999888888877643
Q ss_pred CCCCCccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccc
Q 044626 155 DKHPGFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVI 234 (429)
Q Consensus 155 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l 234 (429)
.+..||++.+|++|+|..+.+||..+ +.++++|+|+|++++|+ .++.. ..++..+++
T Consensus 155 -~~~~~g~v~~d~~g~V~~~~ekp~~~------------------~~~i~~Giyi~~~~l~~-~l~~~---~~~~~~d~l 211 (253)
T cd02524 155 -PPGRFGELDLDDDGQVTSFTEKPQGD------------------GGWINGGFFVLEPEVFD-YIDGD---DTVFEREPL 211 (253)
T ss_pred -CCCcccEEEECCCCCEEEEEECCCCC------------------CceEEEEEEEECHHHHH-hhccc---cchhhHHHH
Confidence 35788999999889999999997532 35789999999999986 44432 345567899
Q ss_pred hhcccCCceEEEEEecceEEecCCHHHHHHHhHhhhc
Q 044626 235 PAAISIGMKVEAYLFDGYWEDMRSIEAFYHANMECIK 271 (429)
Q Consensus 235 ~~l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~ 271 (429)
+.|++++ ++.+|+++|+|.+|+|+++|.+++..+..
T Consensus 212 ~~li~~~-~v~~~~~~g~w~~I~t~~~~~~~~~~~~~ 247 (253)
T cd02524 212 ERLAKDG-ELMAYKHTGFWQCMDTLRDKQTLEELWNS 247 (253)
T ss_pred HHHHhcC-CEEEEecCCEEEeCcCHHHHHHHHHHHHc
Confidence 9999885 89999999999999999999999977754
No 43
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=2.8e-32 Score=249.31 Aligned_cols=220 Identities=18% Similarity=0.330 Sum_probs=180.3
Q ss_pred EEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcEEE
Q 044626 4 AVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEV 83 (429)
Q Consensus 4 avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i 83 (429)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+|++|.+.|+++|+|+++++.+++.+|+.+... |+.+ +
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~~-~~~~------i 72 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGSK-FGVN------I 72 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCccc-cCcc------E
Confidence 69999999999999999999999999999 99999999999999999999999998889999876433 3322 3
Q ss_pred EeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCccEE
Q 044626 84 IAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGFGLL 163 (429)
Q Consensus 84 ~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g~v 163 (429)
.+..+. .+.|++++++.+.+... ++|++++||.+++.++..+++.|+..++++++++.... ....||++
T Consensus 73 ~~~~~~-----~~~g~~~~l~~~~~~~~----~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~g~~ 141 (220)
T cd06426 73 SYVRED-----KPLGTAGALSLLPEKPT----DPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYE--VQVPYGVV 141 (220)
T ss_pred EEEECC-----CCCcchHHHHHHHhhCC----CCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcC--CCCcceEE
Confidence 322221 13799999987765443 89999999998899999999999988888888776543 34668988
Q ss_pred EEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchhcccCCce
Q 044626 164 RVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPAAISIGMK 243 (429)
Q Consensus 164 ~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~l~~~g~~ 243 (429)
..|+ ++|..+.||+. .+.++++|+|+|++++++ .+++ .......++++.++++|.+
T Consensus 142 ~~d~-~~v~~~~ek~~-------------------~~~~~~~Giy~~~~~~~~-~i~~---~~~~~l~~~~~~~i~~~~~ 197 (220)
T cd06426 142 ETEG-GRITSIEEKPT-------------------HSFLVNAGIYVLEPEVLD-LIPK---NEFFDMPDLIEKLIKEGKK 197 (220)
T ss_pred EECC-CEEEEEEECCC-------------------CCCeEEEEEEEEcHHHHh-hcCC---CCCcCHHHHHHHHHHCCCc
Confidence 8875 89999999864 245789999999999986 3332 2222346889999988788
Q ss_pred EEEEEecceEEecCCHHHHHHHh
Q 044626 244 VEAYLFDGYWEDMRSIEAFYHAN 266 (429)
Q Consensus 244 i~~~~~~~~~~~i~t~~~~~~an 266 (429)
+.+|+++++|.+++||++|.+||
T Consensus 198 i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 198 VGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred EEEEEeCCeEEeCCCHHHHHhhC
Confidence 99999999999999999999986
No 44
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=2.9e-32 Score=249.61 Aligned_cols=223 Identities=21% Similarity=0.353 Sum_probs=183.8
Q ss_pred EEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcEEE
Q 044626 4 AVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEV 83 (429)
Q Consensus 4 avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i 83 (429)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+++.+.+. ++. .+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~-~~~------~~ 72 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYR-GGI------RI 72 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCccc-cCc------eE
Confidence 69999999999999999999999999999 99999999999999999999999988889999976432 222 12
Q ss_pred EeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCccEE
Q 044626 84 IAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGFGLL 163 (429)
Q Consensus 84 ~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g~v 163 (429)
....+. ...|++++++.+++++. .++|++++||++++.++.++++.|++.++++++++.+.+ ++..|+.+
T Consensus 73 ~~~~~~-----~~~G~~~~l~~a~~~~~---~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~v 142 (223)
T cd06915 73 YYVIEP-----EPLGTGGAIKNALPKLP---EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVP--DASRYGNV 142 (223)
T ss_pred EEEECC-----CCCcchHHHHHHHhhcC---CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECC--CCCcceeE
Confidence 222221 13799999999998884 289999999998888999999999888888887776643 45678988
Q ss_pred EEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchhcccCCce
Q 044626 164 RVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPAAISIGMK 243 (429)
Q Consensus 164 ~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~l~~~g~~ 243 (429)
.+|++|+|..+.+|+... .+.+.++|+|+|++++|+. +.. ...++.+++++.+++++ +
T Consensus 143 ~~d~~~~v~~~~ek~~~~-----------------~~~~~~~Giy~~~~~~l~~-~~~---~~~~~~~~~~~~l~~~~-~ 200 (223)
T cd06915 143 TVDGDGRVIAFVEKGPGA-----------------APGLINGGVYLLRKEILAE-IPA---DAFSLEADVLPALVKRG-R 200 (223)
T ss_pred EECCCCeEEEEEeCCCCC-----------------CCCcEEEEEEEECHHHHhh-CCc---cCCChHHHHHHHHHhcC-c
Confidence 898888999999986532 3568899999999999874 332 13345678999999876 8
Q ss_pred EEEEEecceEEecCCHHHHHHHh
Q 044626 244 VEAYLFDGYWEDMRSIEAFYHAN 266 (429)
Q Consensus 244 i~~~~~~~~~~~i~t~~~~~~an 266 (429)
+.+|+++++|.||+|++||.+|+
T Consensus 201 v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 201 LYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred EEEEecCCeEEecCCHHHHHhhC
Confidence 99999999999999999999873
No 45
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=6.5e-32 Score=246.28 Aligned_cols=217 Identities=25% Similarity=0.419 Sum_probs=182.4
Q ss_pred EEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcEEE
Q 044626 4 AVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEV 83 (429)
Q Consensus 4 avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i 83 (429)
|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+.+.+++.+.+. ++.+ +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~-~~~~------i 72 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSK-FGVN------I 72 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhh-cCce------E
Confidence 69999999999999999999999999999 99999999999999999999999988899999976532 2322 3
Q ss_pred EeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCccEE
Q 044626 84 IAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGFGLL 163 (429)
Q Consensus 84 ~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g~v 163 (429)
.+..+. .+.|++++++.+++++. .++|++++||++++.++.++++.|+++++++++++.+.+ ++..|+.+
T Consensus 73 ~~~~~~-----~~~g~~~al~~~~~~~~---~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v 142 (217)
T cd04181 73 EYVVQE-----EPLGTAGAVRNAEDFLG---DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DPSRYGVV 142 (217)
T ss_pred EEEeCC-----CCCccHHHHHHhhhhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CCCcceEE
Confidence 333332 13799999999998883 389999999999999999999999998888888876654 57789999
Q ss_pred EEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchhcccCCce
Q 044626 164 RVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPAAISIGMK 243 (429)
Q Consensus 164 ~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~l~~~g~~ 243 (429)
.+|++++|..+.||+... .+.+.++|+|+|++++|+ .+++......++..++++.++++ .+
T Consensus 143 ~~d~~~~v~~~~ek~~~~-----------------~~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~l~~~-~~ 203 (217)
T cd04181 143 ELDDDGRVTRFVEKPTLP-----------------ESNLANAGIYIFEPEILD-YIPEILPRGEDELTDAIPLLIEE-GK 203 (217)
T ss_pred EEcCCCcEEEEEECCCCC-----------------CCCEEEEEEEEECHHHHH-hhhhcCCcccccHHHHHHHHHhc-CC
Confidence 998889999999997643 246899999999999885 66654333456678999999987 78
Q ss_pred EEEEEecceEEecC
Q 044626 244 VEAYLFDGYWEDMR 257 (429)
Q Consensus 244 i~~~~~~~~~~~i~ 257 (429)
+++|+++|+|.|++
T Consensus 204 v~~~~~~g~w~dig 217 (217)
T cd04181 204 VYGYPVDGYWLDIG 217 (217)
T ss_pred EEEEEcCCEEecCC
Confidence 99999999999985
No 46
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=5.2e-31 Score=235.06 Aligned_cols=245 Identities=19% Similarity=0.246 Sum_probs=201.3
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccC-ccc-----
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSG-ILR----- 75 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~-~~~----- 75 (429)
++|||+|||.||||.|.|...||-||||-+| |+|+|+++.+..+||++|++|++.....+.+|++..+.. ..+
T Consensus 5 rKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~K 83 (291)
T COG1210 5 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGK 83 (291)
T ss_pred cEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhCH
Confidence 4799999999999999999999999999999 999999999999999999999998888888888765431 000
Q ss_pred -------C-CCCcEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEe---ccHHHHHHHHHhcCCc
Q 044626 76 -------G-KDGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYK---MDYQRLIEAHRNNKAD 144 (429)
Q Consensus 76 -------~-~~~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~---~~l~~~~~~~~~~~~~ 144 (429)
+ ....+.+.++.|. .++|.++|+++|++++.+ ++|.|+.+|.++. ..++++++.|.+.+..
T Consensus 84 ~~~L~~v~~i~~~~~i~~vRQ~-----e~~GLGhAVl~A~~~vg~---EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~s 155 (291)
T COG1210 84 RELLEEVRSIPPLVTISFVRQK-----EPLGLGHAVLCAKPFVGD---EPFAVLLPDDLVDSEKPCLKQMIELYEETGGS 155 (291)
T ss_pred HHHHHHHHhcccCceEEEEecC-----CCCcchhHHHhhhhhcCC---CceEEEeCCeeecCCchHHHHHHHHHHHhCCc
Confidence 1 1123456666554 378999999999999985 8999999999873 3468899999887765
Q ss_pred eEEEEEeccCCCCCCccEEE----EcCC-CCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHH
Q 044626 145 ITIVALNAIRDKHPGFGLLR----VNPV-NQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLL 219 (429)
Q Consensus 145 ~ti~~~~~~~~~~~~~g~v~----~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l 219 (429)
. +.+..++.++.+.||++. .+.+ -+|..+.|||..... .|++.-.|-|+++|++|+ +|
T Consensus 156 v-i~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A---------------PSnlai~GRYil~p~IFd-~L 218 (291)
T COG1210 156 V-IGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA---------------PSNLAIVGRYVLTPEIFD-IL 218 (291)
T ss_pred E-EEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC---------------CcceeeeeeeecCHHHHH-HH
Confidence 4 555678778889999997 3322 489999999964421 689999999999999997 77
Q ss_pred HhhCC--CCcccccccchhcccCCceEEEEEecceEEecCCHHHHHHHhHhhhccc
Q 044626 220 KEYLP--EATDLGSEVIPAAISIGMKVEAYLFDGYWEDMRSIEAFYHANMECIKRS 273 (429)
Q Consensus 220 ~~~~~--~~~~~~~d~l~~l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~~~ 273 (429)
++..+ ..+-+.+|.+..|+++ ..+++|.++|..+|++++..|++|+..+..+.
T Consensus 219 ~~~~~G~ggEiQLTDai~~L~~~-~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 219 EETKPGAGGEIQLTDAIKKLLKK-EPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred hhCCCCCCCEeeHHHHHHHHHhh-CcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 76433 3455679999999997 89999999999999999999999999887644
No 47
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.97 E-value=8.8e-30 Score=229.22 Aligned_cols=198 Identities=39% Similarity=0.674 Sum_probs=161.8
Q ss_pred EEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCC-CCcEE
Q 044626 4 AVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGK-DGFVE 82 (429)
Q Consensus 4 avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~-~~~v~ 82 (429)
|||||||.|+||+|+|...||+|+|++|++|||+|+++++..+|+++++|+++++.+++.+|+.+... |+.+. ...+.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~-~~~~~~~~~~~ 79 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKE-WDLDRKNGGLF 79 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCc-ccCCCCCCCEE
Confidence 69999999999999999999999999997699999999999999999999999999999999986544 55542 22344
Q ss_pred EEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCccE
Q 044626 83 VIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGFGL 162 (429)
Q Consensus 83 i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g~ 162 (429)
++...+.. .+++++||+++++.++++++....++|++++||++++.++.++++.|+++++++++++.
T Consensus 80 ~~~~~~~~-~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------------ 146 (200)
T cd02508 80 ILPPQQRK-GGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------------ 146 (200)
T ss_pred EeCcccCC-CCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------------
Confidence 54433210 22357899999999999986432378999999999999999999999988888877642
Q ss_pred EEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhC-CCCcccccccchhcccCC
Q 044626 163 LRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYL-PEATDLGSEVIPAAISIG 241 (429)
Q Consensus 163 v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~-~~~~~~~~d~l~~l~~~g 241 (429)
+++|+|+|++++|.++++... ....++.+|+++.++++
T Consensus 147 ----------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~- 185 (200)
T cd02508 147 ----------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKK- 185 (200)
T ss_pred ----------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhcc-
Confidence 167999999999976776532 23456678999999998
Q ss_pred ceEEEEEecceEEec
Q 044626 242 MKVEAYLFDGYWEDM 256 (429)
Q Consensus 242 ~~i~~~~~~~~~~~i 256 (429)
.++++|+++++|.||
T Consensus 186 ~~v~~~~~~g~w~di 200 (200)
T cd02508 186 LKIYAYEFNGYWADI 200 (200)
T ss_pred CcEEEEEeCCeEecC
Confidence 689999999999986
No 48
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.97 E-value=4.5e-30 Score=234.06 Aligned_cols=202 Identities=17% Similarity=0.255 Sum_probs=152.2
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
++|||||||.|+||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++++|+.+.+. |+.+.. .+
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~-~~~~~~-~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKW-SKPKSS-LM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccc-cccccC-cc
Confidence 6899999999999999999999999999999 99999999999999999999999999999999987544 443210 11
Q ss_pred EEEeccccccccCcccCcHHHHHHH--HHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhc-----CCceEEEEEeccC
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRC--LWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNN-----KADITIVALNAIR 154 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~--~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~-----~~~~ti~~~~~~~ 154 (429)
.+.+..+. ...|++++++.. +..+. ++|++++||++++.++.+++++|+++ ++++|+++.+.+.
T Consensus 78 ~i~~~~~~-----~~~~~~~al~~~~~~~~~~----~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~ 148 (217)
T cd04197 78 IVIIIMSE-----DCRSLGDALRDLDAKGLIR----GDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASP 148 (217)
T ss_pred eEEEEeCC-----CcCccchHHHHHhhccccC----CCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCC
Confidence 22222222 135788888653 33332 78999999999999999999999884 7888888877654
Q ss_pred CC----CCCccEEEEcCC-CCEEEEEecCccccccc--ccCCCC-CCCCCCCCCCcceeeEEEEcHHHH
Q 044626 155 DK----HPGFGLLRVNPV-NQVIEFSMKSERETITS--ISGKSS-RKSDSVASGNFPSMGIYLINRDTM 215 (429)
Q Consensus 155 ~~----~~~~g~v~~d~~-~~v~~~~ek~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~Giy~~~~~~l 215 (429)
+. ...++++.+|++ ++|..+.|||..+.... +.+... ........+++.++|+|+|++++|
T Consensus 149 ~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 149 PHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred ccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 32 234678888766 89999999987664211 111110 112223478999999999998764
No 49
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.97 E-value=4.8e-29 Score=229.73 Aligned_cols=220 Identities=15% Similarity=0.186 Sum_probs=168.4
Q ss_pred EEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChh---HHHHHHhccccCcccCCCCc
Q 044626 4 AVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNST---SLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 4 avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~---~i~~~l~~~~~~~~~~~~~~ 80 (429)
+||||||.|+||+|+|..+||||+|++|+ |||+|+|+.|.++|++++++++++... .+.+++..... .
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~~~--------~ 71 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLLAP--------N 71 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHhCC--------C
Confidence 48999999999999999999999999999 999999999999999999998864321 12223322111 1
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCc
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGF 160 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~ 160 (429)
+.+..... .+.|++++++.++..+.. .++|++++||++++.++..+++.|.+.+.+.++++... ....|
T Consensus 72 ~~i~~~~~------~~~g~~~~l~~a~~~l~~--~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~ 140 (231)
T cd04183 72 ATVVELDG------ETLGAACTVLLAADLIDN--DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---SHPRW 140 (231)
T ss_pred CEEEEeCC------CCCcHHHHHHHHHhhcCC--CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC---CCCCe
Confidence 22332221 137999999999988842 27899999999999999888988877777766655443 34578
Q ss_pred cEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHH-HHHHHHHhhC----C-CCcccccccc
Q 044626 161 GLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRD-TMSRLLKEYL----P-EATDLGSEVI 234 (429)
Q Consensus 161 g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~-~l~~~l~~~~----~-~~~~~~~d~l 234 (429)
+.+.+|++|+|..+.+|+. .+.+.++|+|+|+++ .|.+.+++.. . ....+..+++
T Consensus 141 ~~v~~d~~~~v~~~~ek~~-------------------~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i 201 (231)
T cd04183 141 SYVKLDENGRVIETAEKEP-------------------ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLY 201 (231)
T ss_pred EEEEECCCCCEEEeEEcCC-------------------CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHH
Confidence 9999998999999988743 245789999999987 5555555421 1 1223457899
Q ss_pred hhcccCCceEEEEEe-cceEEecCCHHHH
Q 044626 235 PAAISIGMKVEAYLF-DGYWEDMRSIEAF 262 (429)
Q Consensus 235 ~~l~~~g~~i~~~~~-~~~~~~i~t~~~~ 262 (429)
+.++++|.++.++.+ +++|.|++||++|
T Consensus 202 ~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 202 NELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred HHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 999988888999999 6899999999987
No 50
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.97 E-value=3.7e-29 Score=230.11 Aligned_cols=223 Identities=17% Similarity=0.251 Sum_probs=168.9
Q ss_pred EEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcEEE
Q 044626 4 AVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEV 83 (429)
Q Consensus 4 avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i 83 (429)
|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+.+.+|+.+.. + +.+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~---~------~~~ 70 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKYP---N------IKF 70 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhccC---C------eEE
Confidence 69999999999999999999999999999 9999999999999999999999999999999987531 1 233
Q ss_pred EeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCccEE
Q 044626 84 IAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGFGLL 163 (429)
Q Consensus 84 ~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g~v 163 (429)
+...+. + +.|++++++.+++++. ++|++++||++++. ++++.|.+.+++.++++.+...+....++..
T Consensus 71 ~~~~~~--~---~~g~~~s~~~~~~~~~----~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (229)
T cd02523 71 VYNPDY--A---ETNNIYSLYLARDFLD----EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKD 138 (229)
T ss_pred EeCcch--h---hhCcHHHHHHHHHHcC----CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceee
Confidence 322211 1 3799999999998883 89999999998755 4567777778888888766332333445443
Q ss_pred EEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHh---hCC--CCcccccccchhcc
Q 044626 164 RVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKE---YLP--EATDLGSEVIPAAI 238 (429)
Q Consensus 164 ~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~---~~~--~~~~~~~d~l~~l~ 238 (429)
..+ ++.+..+.+|+..+. ...+.++|+|+|+++.|..+.+. ..+ ....+.+++++.++
T Consensus 139 ~~~-~~~v~~~~~k~~~~~----------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~ 201 (229)
T cd02523 139 LDD-AGVLLGIISKAKNLE----------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLI 201 (229)
T ss_pred ecC-ccceEeecccCCCcc----------------hhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 333 378888888875431 24578999999999998654332 111 23455678999998
Q ss_pred cC-CceEEEEEecceEEecCCHHHHHHHh
Q 044626 239 SI-GMKVEAYLFDGYWEDMRSIEAFYHAN 266 (429)
Q Consensus 239 ~~-g~~i~~~~~~~~~~~i~t~~~~~~an 266 (429)
++ +.++..+.. ++|.||+++++|.+|+
T Consensus 202 ~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 202 SEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred hhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 73 345555555 8999999999999874
No 51
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.95 E-value=3.5e-27 Score=214.68 Aligned_cols=203 Identities=19% Similarity=0.253 Sum_probs=149.4
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
|+|||||||.|+||.|+|...||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+.+. +.......+
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~-~~~~~~~~v 78 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKW-SSLSSKMIV 78 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhccc-ccccCCceE
Confidence 6999999999999999999999999999999 99999999999999999999999999999999987542 100101123
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHH--HHhcCCceEEEEEeccCC----
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEA--HRNNKADITIVALNAIRD---- 155 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~--~~~~~~~~ti~~~~~~~~---- 155 (429)
.+....+. .+.|++++++.+++.+. ++|++++||++++.++..+++. +...++++++++...+..
T Consensus 79 ~~~~~~~~-----~~~Gta~~l~~~~~~i~----~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~ 149 (216)
T cd02507 79 DVITSDLC-----ESAGDALRLRDIRGLIR----SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTE 149 (216)
T ss_pred EEEEccCC-----CCCccHHHHHHHhhcCC----CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCcc
Confidence 33333321 24799999999998885 8899999999999999999965 444455666555443321
Q ss_pred ---CCCCccEEEEcCC---CCEEEEEecCcccccccccCCCC-CCCCCCCCCCcceeeEEEEcHHHH
Q 044626 156 ---KHPGFGLLRVNPV---NQVIEFSMKSERETITSISGKSS-RKSDSVASGNFPSMGIYLINRDTM 215 (429)
Q Consensus 156 ---~~~~~g~v~~d~~---~~v~~~~ek~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Giy~~~~~~l 215 (429)
....++++.+|++ .++..+.+++.......+..... .......++++.++|+|+|++++|
T Consensus 150 ~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 150 QSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred ccccCCCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 2566788888877 57777777766543221111111 112233478999999999998764
No 52
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.94 E-value=1.8e-25 Score=205.54 Aligned_cols=222 Identities=21% Similarity=0.286 Sum_probs=172.1
Q ss_pred EEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcEEE
Q 044626 4 AVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEV 83 (429)
Q Consensus 4 avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i 83 (429)
|||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++++++++|+++++.+++.+++.+ + + +.+
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~-~---~------~~~ 66 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN-P---N------VEF 66 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC-C---C------cEE
Confidence 69999999999985 589999999999 99999999999999999999999888888888865 1 1 223
Q ss_pred EeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccCCCCCCcc
Q 044626 84 IAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIRDKHPGFG 161 (429)
Q Consensus 84 ~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g 161 (429)
.. +. ...|++++++++++.++. ..++|++++||. ++ ..++..+++.|.+.++++++...+. +++..|+
T Consensus 67 ~~--~~-----~~~g~~~ai~~a~~~~~~-~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~--~~p~~~~ 136 (229)
T cd02540 67 VL--QE-----EQLGTGHAVKQALPALKD-FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAEL--EDPTGYG 136 (229)
T ss_pred EE--CC-----CCCCCHHHHHHHHHhhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEc--CCCCCcc
Confidence 21 21 136999999999998853 137899999999 44 6778999999988777777665544 3567889
Q ss_pred EEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCC---CCcccccccchhcc
Q 044626 162 LLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLP---EATDLGSEVIPAAI 238 (429)
Q Consensus 162 ~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~---~~~~~~~d~l~~l~ 238 (429)
.+..+++|+|..+.+|+..... + ..+++.++|+|+|+++.|.++++.... ....+..++++.++
T Consensus 137 ~~~~~~~~~v~~~~ek~~~~~~----------~---~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~ 203 (229)
T cd02540 137 RIIRDGNGKVLRIVEEKDATEE----------E---KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAV 203 (229)
T ss_pred EEEEcCCCCEEEEEECCCCChH----------H---HhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHH
Confidence 8888877899999998642100 0 013578999999999877667765422 13445689999999
Q ss_pred cCCceEEEEEecc--eEEecCCHHHH
Q 044626 239 SIGMKVEAYLFDG--YWEDMRSIEAF 262 (429)
Q Consensus 239 ~~g~~i~~~~~~~--~~~~i~t~~~~ 262 (429)
++|.+++++.++| .|+.++||.++
T Consensus 204 ~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 204 ADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred HCCCEEEEEEcCCcceEecCCChHhC
Confidence 8888999999975 57788888763
No 53
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.94 E-value=2e-26 Score=209.37 Aligned_cols=200 Identities=15% Similarity=0.236 Sum_probs=146.6
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecCh-hHHHHHHhccccCcccCCCCc
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNS-TSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 80 (429)
|||||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++|+|++++.. +.+++++.+.. |.... .
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~--~~~~~--~ 75 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFP--LNLKQ--K 75 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcc--cccCc--c
Confidence 7999999999999999999999999999999 99999999999999999999998754 56777776531 11110 1
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCC-----
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRD----- 155 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~----- 155 (429)
..+....+. .+.|++++++.+++.+. ++|++++||.+++.++..+++.|++.++.+|+++.+....
T Consensus 76 ~~~~~~~~~-----~~~gt~~al~~~~~~i~----~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~ 146 (214)
T cd04198 76 LDEVTIVLD-----EDMGTADSLRHIRKKIK----KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKG 146 (214)
T ss_pred eeEEEecCC-----CCcChHHHHHHHHhhcC----CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccC
Confidence 112222221 24799999999998774 7899999999999999999999999999999988765421
Q ss_pred ------CCCCccEEEEcCC-CCEEEEEecCcccccccccCCCC-CCCCCCCCCCcceeeEEEEcHHHH
Q 044626 156 ------KHPGFGLLRVNPV-NQVIEFSMKSERETITSISGKSS-RKSDSVASGNFPSMGIYLINRDTM 215 (429)
Q Consensus 156 ------~~~~~g~v~~d~~-~~v~~~~ek~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Giy~~~~~~l 215 (429)
....+.++.+|++ ++++.+....+.+....++.... .......++++.++|+|+|++++|
T Consensus 147 ~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 147 GKGKSKKADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CcccccCCCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 1244667777754 67887766433222222211110 112233478999999999998764
No 54
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.94 E-value=1.1e-25 Score=211.82 Aligned_cols=233 Identities=21% Similarity=0.267 Sum_probs=163.7
Q ss_pred eEEEEEcCCCCCCcccccc-cccccccccCC-cchhHHHHHHhhHhc-CCCeEEEEeecCh-hHHHHHHhccccCcccCC
Q 044626 2 VAAVVFGDGSESRLYPLTK-RRSEGAIPLAA-NYRLVDAVVSNCINS-NINKIYALTQFNS-TSLNLHLSRAFSGILRGK 77 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~-~~pK~Llpi~g-~~plI~~~i~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~ 77 (429)
|++||||||.|+||+|+|. .+||+|+|++| + |||+++++++... ++++|+|+++++. +.+.+++.+. ..
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~-~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~~----~~-- 73 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDK-SLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPEG----LP-- 73 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCC-cHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhhc----CC--
Confidence 7899999999999999996 79999999999 7 9999999999998 4999999998754 4466666541 11
Q ss_pred CCcEEEEeccccccccCcccCcHHHHHHHHHHhhcC-CCCeEEEEcCceeEe--ccHHHHHHHHHh---cCCceEEEEEe
Q 044626 78 DGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEY-PVTEFLILPGHHLYK--MDYQRLIEAHRN---NKADITIVALN 151 (429)
Q Consensus 78 ~~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~-~~~~~lvl~gD~i~~--~~l~~~~~~~~~---~~~~~ti~~~~ 151 (429)
.+.++. +. .+.||++++..++.++... +++.+++++||+++. .+|.++++.+.+ .++.+|+...+
T Consensus 74 --~~~ii~--ep-----~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p 144 (274)
T cd02509 74 --EENIIL--EP-----EGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKP 144 (274)
T ss_pred --CceEEE--CC-----CCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeee
Confidence 122332 21 1379999999999888642 347899999999774 567666655433 45667766655
Q ss_pred ccCCCCCCccEEEEcCCC-----CEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCC
Q 044626 152 AIRDKHPGFGLLRVNPVN-----QVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEA 226 (429)
Q Consensus 152 ~~~~~~~~~g~v~~d~~~-----~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 226 (429)
. +....||++..+++. +|..|.|||........ .....+++++|+|+|+++.|.+.++...+..
T Consensus 145 ~--~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~---------~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~ 213 (274)
T cd02509 145 T--RPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEY---------LESGNYLWNSGIFLFRAKTFLEELKKHAPDI 213 (274)
T ss_pred c--CCCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHH---------hhcCCeEEECceeeeeHHHHHHHHHHHCHHH
Confidence 3 234789999988653 89999999975432111 0013468899999999988766666543210
Q ss_pred -------------c---ccccccchh---------cccCCceEEEEEecceEEecCCHHH
Q 044626 227 -------------T---DLGSEVIPA---------AISIGMKVEAYLFDGYWEDMRSIEA 261 (429)
Q Consensus 227 -------------~---~~~~d~l~~---------l~~~g~~i~~~~~~~~~~~i~t~~~ 261 (429)
. .+..+.++. ++++..++.+++.+-.|.|++++.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 214 YEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 0 111222332 1333356888888889999999865
No 55
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.92 E-value=3e-23 Score=192.83 Aligned_cols=234 Identities=12% Similarity=0.102 Sum_probs=161.0
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
|+.+||||+|.|+||. +|+|+|++|+ |||+|+++.|.++++++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~----~~------ 62 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVEA----FG------ 62 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH----cC------
Confidence 4679999999999995 7999999999 999999999999999999988753 567777754 12
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEecc----C
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAI----R 154 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~----~ 154 (429)
+.++...+. ++.|++... .+...++....+.+++++||+ +. ...+..+++.|+.++++.+++..+.. .
T Consensus 63 ~~v~~~~~~-----~~~gt~~~~-~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~ 136 (245)
T PRK05450 63 GEVVMTSPD-----HPSGTDRIA-EAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEA 136 (245)
T ss_pred CEEEECCCc-----CCCchHHHH-HHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHh
Confidence 123322221 235765544 344444211236799999999 55 66678999988876666666554442 1
Q ss_pred CCCCCccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCccccc--c
Q 044626 155 DKHPGFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGS--E 232 (429)
Q Consensus 155 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~--d 232 (429)
.++..++++ +|++|++..|.+||..+. .+....+ ...+.+.++|+|+|+++.|..+.+. .+...+... +
T Consensus 137 ~~~~~~~v~-~d~~g~v~~~~e~~~~~~-----~~~~~~~--~~~~~~~~~Giy~~~~~~l~~~~~~-~~~~~~~~~~~~ 207 (245)
T PRK05450 137 FNPNVVKVV-LDADGRALYFSRAPIPYG-----RDAFADS--APTPVYRHIGIYAYRRGFLRRFVSL-PPSPLEKIESLE 207 (245)
T ss_pred cCcCCCEEE-eCCCCcEEEecCCCCCCC-----CCccccc--cCccccEEEEEEecCHHHHHHHHhC-CCCccccchhHH
Confidence 356667765 888899999999984321 0110000 0135789999999999999865542 121111111 1
Q ss_pred cchhcccCCceEEEEEecc-eEEecCCHHHHHHHhHhh
Q 044626 233 VIPAAISIGMKVEAYLFDG-YWEDMRSIEAFYHANMEC 269 (429)
Q Consensus 233 ~l~~l~~~g~~i~~~~~~~-~~~~i~t~~~~~~an~~~ 269 (429)
++ .++++|.+++++.+++ +|.+|+||++|.+|++.+
T Consensus 208 ~~-~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 208 QL-RALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred HH-HHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 22 3556688999999986 999999999999998764
No 56
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=7.3e-24 Score=186.17 Aligned_cols=221 Identities=13% Similarity=0.191 Sum_probs=150.8
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEe-ecChhHHHHHHhccccCcccCCCCc
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALT-QFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~-~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
|+|||||||.||||+| ..||||+.++|+ |+|+|+|++|++.|++++++|+ ++..+.+.+++.+. + . .
T Consensus 4 ~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~-~---~----~ 71 (239)
T COG1213 4 MKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKY-P---F----N 71 (239)
T ss_pred eeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcC-C---c----c
Confidence 7899999999999998 899999999999 9999999999999999999999 88888888888763 2 1 1
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccH-HHHHHHHHhcCCceEEEEEeccCCCCCC
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDY-QRLIEAHRNNKADITIVALNAIRDKHPG 159 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l-~~~~~~~~~~~~~~ti~~~~~~~~~~~~ 159 (429)
.++++.... + ..+++.+|+.+++++. ..|++++||+++...+ +.++++- ... +.+...+......
T Consensus 72 ~~iv~N~~y--~---ktN~~~Sl~~akd~~~----~~fii~~sD~vye~~~~e~l~~a~----~~~-li~d~~~~~~~~~ 137 (239)
T COG1213 72 AKIVINSDY--E---KTNTGYSLLLAKDYMD----GRFILVMSDHVYEPSILERLLEAP----GEG-LIVDRRPRYVGVE 137 (239)
T ss_pred eEEEeCCCc--c---cCCceeEEeeehhhhc----CcEEEEeCCEeecHHHHHHHHhCc----CCc-EEEeccccccccC
Confidence 234332221 1 1477999999999998 7799999999997665 6666542 222 2222322111111
Q ss_pred ccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCccc-ccccchhcc
Q 044626 160 FGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDL-GSEVIPAAI 238 (429)
Q Consensus 160 ~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~-~~d~l~~l~ 238 (429)
-.....+++|.+..+..+... -+..++|++.++++.|....+.. .....+ ..++.+...
T Consensus 138 ea~kv~~e~G~i~~igK~l~e-------------------~~~e~iGi~~l~~~i~~~~~~~~-~e~~~~~~~~~~~~~~ 197 (239)
T COG1213 138 EATKVKDEGGRIVEIGKDLTE-------------------YDGEDIGIFILSDSIFEDTYELL-VERSEYDYREVEKEAG 197 (239)
T ss_pred ceeEEEecCCEEehhcCCccc-------------------ccceeeeeEEechHHHHHHHHHH-hhhhhHHHHHHHHHhC
Confidence 122334578888888877552 24569999999999876333322 111111 122222221
Q ss_pred cCCceEEEEE--e-cceEEecCCHHHHHHHhHhhhc
Q 044626 239 SIGMKVEAYL--F-DGYWEDMRSIEAFYHANMECIK 271 (429)
Q Consensus 239 ~~g~~i~~~~--~-~~~~~~i~t~~~~~~an~~~l~ 271 (429)
.+...+. + ...|.+++||+++.++.+.+..
T Consensus 198 ---~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 198 ---LPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred ---CceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence 1221111 1 3589999999999999887764
No 57
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.91 E-value=3.1e-23 Score=208.55 Aligned_cols=238 Identities=17% Similarity=0.246 Sum_probs=162.8
Q ss_pred eEEEEEcCCCCCCccccccc-ccccccccCC-cchhHHHHHHhhHhcCCCeEEEEeecChh-HHHHHHhccccCcccCCC
Q 044626 2 VAAVVFGDGSESRLYPLTKR-RSEGAIPLAA-NYRLVDAVVSNCINSNINKIYALTQFNST-SLNLHLSRAFSGILRGKD 78 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~-~pK~Llpi~g-~~plI~~~i~~l~~~gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~ 78 (429)
|.+||||||.||||+|+|.. +||+|+|+.| + |||+|+++.|...++++++|+++.... .+.+.+.+ ++.+.
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~----~~~~~- 74 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE----IGKLA- 74 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH----cCCCc-
Confidence 68999999999999999996 8999999976 8 999999999999899999999875432 34445543 22110
Q ss_pred CcEEEEeccccccccCcccCcHHHHHHHHHHhhc--CCCCeEEEEcCceeE-e-ccHHHHHHHH---HhcCCceEEEEEe
Q 044626 79 GFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEE--YPVTEFLILPGHHLY-K-MDYQRLIEAH---RNNKADITIVALN 151 (429)
Q Consensus 79 ~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~--~~~~~~lvl~gD~i~-~-~~l~~~~~~~---~~~~~~~ti~~~~ 151 (429)
..++ .++ .++||+.++..+...+.+ ...+.+++++||+++ + .+|.++++.+ .+.++.+++...+
T Consensus 75 --~~~i--~Ep-----~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p 145 (468)
T TIGR01479 75 --SNII--LEP-----VGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVP 145 (468)
T ss_pred --ceEE--ecc-----cccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 1122 121 137999999887766632 223569999999866 3 4588887764 3334445544432
Q ss_pred ccCCCCCCccEEEEcC------CCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCC
Q 044626 152 AIRDKHPGFGLLRVNP------VNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPE 225 (429)
Q Consensus 152 ~~~~~~~~~g~v~~d~------~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 225 (429)
.+....||++..++ .++|..|.|||..+..... ....++++++|||+|+++.|.+.++...+.
T Consensus 146 --~~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~---------l~~g~~~wNsGif~~~~~~ll~~l~~~~p~ 214 (468)
T TIGR01479 146 --THPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAY---------LESGDYYWNSGMFLFRASRYLAELKKHAPD 214 (468)
T ss_pred --CCCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHH---------HhcCCeEEEeeEEEEEHHHHHHHHHHHCHH
Confidence 23347899999873 2589999999875432111 011357899999999977765555543220
Q ss_pred --------------C---cccccccch---------hcccCCceEEEEEecceEEecCCHHHHHHH
Q 044626 226 --------------A---TDLGSEVIP---------AAISIGMKVEAYLFDGYWEDMRSIEAFYHA 265 (429)
Q Consensus 226 --------------~---~~~~~d~l~---------~l~~~g~~i~~~~~~~~~~~i~t~~~~~~a 265 (429)
. ..+..+.++ .++++..++.+.+.+..|.|+++++++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~ 280 (468)
T TIGR01479 215 IYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEI 280 (468)
T ss_pred HHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHh
Confidence 0 011123344 334445678888999999999999999887
No 58
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.91 E-value=6.8e-23 Score=189.72 Aligned_cols=228 Identities=15% Similarity=0.141 Sum_probs=158.7
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhc-CCCeEEEEeecChhHHHHHHhccccCcccCCCC
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINS-NINKIYALTQFNSTSLNLHLSRAFSGILRGKDG 79 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 79 (429)
+|.|||||+|.|+||+ ||+|+|++|+ |||+|+++.|.++ ++++|+|++++ +.+.+++.+ ++
T Consensus 1 ~~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~----~~----- 62 (239)
T cd02517 1 KVIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES----FG----- 62 (239)
T ss_pred CEEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH----cC-----
Confidence 5789999999999997 7999999999 9999999999998 89999998864 567777754 12
Q ss_pred cEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhc-CCceEEEEEeccCC-
Q 044626 80 FVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNN-KADITIVALNAIRD- 155 (429)
Q Consensus 80 ~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~-~~~~ti~~~~~~~~- 155 (429)
+++....+. +..|+++ +..+++.+... .+.|++++||+ ++ ...+..+++.|... ++++++++.+....
T Consensus 63 -~~~~~~~~~-----~~~gt~~-~~~~~~~~~~~-~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 134 (239)
T cd02517 63 -GKVVMTSPD-----HPSGTDR-IAEVAEKLDAD-DDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEE 134 (239)
T ss_pred -CEEEEcCcc-----cCchhHH-HHHHHHhcCCC-CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHH
Confidence 223322221 2367864 66666656421 26799999998 55 67789999988776 67777776664321
Q ss_pred ---CCCCccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccc
Q 044626 156 ---KHPGFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSE 232 (429)
Q Consensus 156 ---~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d 232 (429)
....++ +..+++|.|..|.+++.... .+.+ ...+.+.++|+|+|+++.|+.+.+.. ....+ ..+
T Consensus 135 ~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~-----~~~~-----~~~~~~~~~Giy~~~~~~~~~~~~~~-~~~~~-~~~ 201 (239)
T cd02517 135 ELFNPNVVK-VVLDKDGYALYFSRSPIPYP-----RDSS-----EDFPYYKHIGIYAYRRDFLLRFAALP-PSPLE-QIE 201 (239)
T ss_pred HccCCCCCE-EEECCCCCEEEecCCCCCCC-----CCCC-----CCCceeEEEEEEEECHHHHHHHHhCC-Cchhh-hhh
Confidence 122333 55677789999987643210 0000 00246899999999999998654421 11111 123
Q ss_pred cch--hcccCCceEEEEEecceEEecCCHHHHHHHhH
Q 044626 233 VIP--AAISIGMKVEAYLFDGYWEDMRSIEAFYHANM 267 (429)
Q Consensus 233 ~l~--~l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~ 267 (429)
.++ .++++|.+++++..++.|.+|+||++|.+|++
T Consensus 202 ~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 202 SLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred hHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 333 35667788999999899999999999999875
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.88 E-value=3.4e-21 Score=178.18 Aligned_cols=226 Identities=13% Similarity=0.211 Sum_probs=154.0
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhc-CCCeEEEEeecChhHHHHHHhccccCcccCCCC
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINS-NINKIYALTQFNSTSLNLHLSRAFSGILRGKDG 79 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 79 (429)
++.|||||+|.|+||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++.+ ++.
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~----~~~---- 64 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA----FGG---- 64 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH----cCC----
Confidence 4679999999999996 6999999999 9999999999998 79999998864 567777764 222
Q ss_pred cEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce--eEeccHHHHHHHHHhcCC-ceEEEEEeccC--
Q 044626 80 FVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH--LYKMDYQRLIEAHRNNKA-DITIVALNAIR-- 154 (429)
Q Consensus 80 ~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~--i~~~~l~~~~~~~~~~~~-~~ti~~~~~~~-- 154 (429)
++....+. +..|++ .+..+++.+. .+.|++++||. +...++..+++.+...+. .+++++...+.
T Consensus 65 --~v~~~~~~-----~~~g~~-~~~~a~~~~~---~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 133 (238)
T PRK13368 65 --KVVMTSDD-----HLSGTD-RLAEVMLKIE---ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEE 133 (238)
T ss_pred --eEEecCcc-----CCCccH-HHHHHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHH
Confidence 13222211 135665 4666666553 37899999997 447788999998876543 44444443321
Q ss_pred C--CCCCccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCC-ccccc
Q 044626 155 D--KHPGFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEA-TDLGS 231 (429)
Q Consensus 155 ~--~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~-~~~~~ 231 (429)
. ++..+++ ..+++|++..+.+++.... .+. ...+.+.++|+|+|++++|.. ++...... ..+..
T Consensus 134 ~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~----------~~~-~~~~~~~n~giy~~~~~~l~~-~~~~~~~~~~~~~~ 200 (238)
T PRK13368 134 EFESPNVVKV-VVDKNGDALYFSRSPIPSR----------RDG-ESARYLKHVGIYAFRRDVLQQ-FSQLPETPLEQIES 200 (238)
T ss_pred HhcCcCCCEE-EECCCCCEEEeeCCCCCCC----------CCC-CCCceeEEEEEEEeCHHHHHH-HHcCCCChhhhhhh
Confidence 1 2444444 4456789999987542110 000 002457899999999999974 43311111 11222
Q ss_pred -ccchhcccCCceEEEEEecceEEecCCHHHHHHHhHh
Q 044626 232 -EVIPAAISIGMKVEAYLFDGYWEDMRSIEAFYHANME 268 (429)
Q Consensus 232 -d~l~~l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~ 268 (429)
+++ .+++.|.++.++..+++|+||++|+||..++..
T Consensus 201 ~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 201 LEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred HHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 455 555557789999989999999999999999764
No 60
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=1e-20 Score=159.19 Aligned_cols=220 Identities=14% Similarity=0.192 Sum_probs=148.9
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
|.|||||||.||||.|||...||+||.|.|+ |||++.|+.|.++||++|+||+||..+++ +||.+.+. +
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy~---------v 69 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKYD---------V 69 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhcC---------e
Confidence 7899999999999999999999999999999 99999999999999999999999988765 78877543 3
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCcc
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGFG 161 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g 161 (429)
.+++... +. .-++..+++.++++++ +.-++.+|.....++ ...+. ..+..+-+.... ...+|
T Consensus 70 tLvyN~k--Y~---~yNn~ySlyla~d~l~-----ntYiidsDnyl~kNi---f~~~~-~~S~Yfav~~~~---~tnEw- 131 (231)
T COG4750 70 TLVYNPK--YR---EYNNIYSLYLARDFLN-----NTYIIDSDNYLTKNI---FLTKE-SHSKYFAVYRSG---KTNEW- 131 (231)
T ss_pred EEEeCch--HH---hhhhHHHHHHHHHHhc-----ccEEeccchHhhhhh---hhcCc-ccceEEEEEecC---CCcee-
Confidence 3443221 21 1477799999999995 456778887543222 11111 112222222221 22333
Q ss_pred EEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHH---HHHHHHhhCCC---Ccccccccch
Q 044626 162 LLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDT---MSRLLKEYLPE---ATDLGSEVIP 235 (429)
Q Consensus 162 ~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~---l~~~l~~~~~~---~~~~~~d~l~ 235 (429)
.+..+.+|+|+.+.-.. .+.++.+|+.+|+... +..+++..... ...+...+..
T Consensus 132 ~l~~~~~~ki~~v~Igg--------------------~~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~yWd~v~~ 191 (231)
T COG4750 132 LLIYNSDGKITRVDIGG--------------------LNGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKLYWDTVPM 191 (231)
T ss_pred EEEEcCCCcEEEEEecC--------------------cccceEeeeeeecchhHHHHHHHHHHHHhCchhhhHHHHHHHH
Confidence 34577889999876542 3457899999998643 44566654221 1223344444
Q ss_pred hcccCCceEEEEEec-ceEEecCCHHHHHHHhHhhhc
Q 044626 236 AAISIGMKVEAYLFD-GYWEDMRSIEAFYHANMECIK 271 (429)
Q Consensus 236 ~l~~~g~~i~~~~~~-~~~~~i~t~~~~~~an~~~l~ 271 (429)
..++. .+++.-..+ +..++++++++|.+....++.
T Consensus 192 ~ni~~-l~m~iek~~~n~IyE~DsLdelrk~~~~~l~ 227 (231)
T COG4750 192 ENIKE-LDMYIEKLNDNDIYEFDSLDELRKFEQKFLS 227 (231)
T ss_pred HHHHH-HhHhHHhhcCCceEEeccHHHHHhhhhhhcC
Confidence 44443 555554443 467889999999988776554
No 61
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=2.9e-19 Score=163.73 Aligned_cols=240 Identities=18% Similarity=0.225 Sum_probs=158.0
Q ss_pred CeEEEEEcCCCCCCcccccc-cccccccccCC-cchhHHHHHHhhHh-cCCCeEEEEeecCh-hHHHHHHhccccCcccC
Q 044626 1 SVAAVVFGDGSESRLYPLTK-RRSEGAIPLAA-NYRLVDAVVSNCIN-SNINKIYALTQFNS-TSLNLHLSRAFSGILRG 76 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~-~~pK~Llpi~g-~~plI~~~i~~l~~-~gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~ 76 (429)
+|.+||||||.||||+||+. .+||++|++.+ + +|++.+++++.. .+.++++++++.+. ..+++.+.+ .+.+
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~-Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e----~~~~ 75 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDL-SLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPE----IDIE 75 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCC-cHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhh----hhhc
Confidence 47899999999999999986 68999999955 7 999999999987 56899999998754 345555554 1111
Q ss_pred CCCcEEEEeccccccccCcccCcHHHHHHHHHHhhc-CCCCeEEEEcCceeE-e-ccHHHHHHHHHh---cCCceEEEEE
Q 044626 77 KDGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEE-YPVTEFLILPGHHLY-K-MDYQRLIEAHRN---NKADITIVAL 150 (429)
Q Consensus 77 ~~~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~-~~~~~~lvl~gD~i~-~-~~l~~~~~~~~~---~~~~~ti~~~ 150 (429)
....+ ++.. . -.+|+-++..+.-.+.+ .++.-++++++|++. + ..|.+.++...+ .+.-+|+...
T Consensus 76 ~~~~i-llEP----~----gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~ 146 (333)
T COG0836 76 NAAGI-ILEP----E----GRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIP 146 (333)
T ss_pred cccce-Eecc----C----CCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 10112 2211 1 25888898887655543 333469999999976 3 346666654333 3333444332
Q ss_pred eccCCCCCCccEEEEcCC------CCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCC
Q 044626 151 NAIRDKHPGFGLLRVNPV------NQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLP 224 (429)
Q Consensus 151 ~~~~~~~~~~g~v~~d~~------~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~ 224 (429)
+. .-...||+++..+. -+|..|.|||+......+ .....+++++|+|+|+...+.+.++...+
T Consensus 147 Pt--~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~y---------v~sG~y~WNSGmF~Fra~~~l~e~~~~~P 215 (333)
T COG0836 147 PT--RPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKY---------VESGEYLWNSGMFLFRASVFLEELKKHQP 215 (333)
T ss_pred CC--CCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHH---------HHcCceEeeccceEEEHHHHHHHHHhhCc
Confidence 22 22378999987441 278899999997643321 22256899999999999877555554422
Q ss_pred C-----------C--cccc---cccchhc---------ccCCceEEEEEecceEEecCCHHHHHHH
Q 044626 225 E-----------A--TDLG---SEVIPAA---------ISIGMKVEAYLFDGYWEDMRSIEAFYHA 265 (429)
Q Consensus 225 ~-----------~--~~~~---~d~l~~l---------~~~g~~i~~~~~~~~~~~i~t~~~~~~a 265 (429)
+ . .++. .+.+... +++..++.+.+.+-.|.|++++.++++.
T Consensus 216 ~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~ 281 (333)
T COG0836 216 DIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEV 281 (333)
T ss_pred HHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHH
Confidence 1 1 0110 0011111 2233678888888899999999999887
No 62
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.81 E-value=4.4e-19 Score=176.82 Aligned_cols=239 Identities=17% Similarity=0.247 Sum_probs=155.4
Q ss_pred CeEEEEEcCCCCCCccccccc-ccccccccCC-cchhHHHHHHhhHhcCCCeEEEEeecCh-hHHHHHHhccccCcccCC
Q 044626 1 SVAAVVFGDGSESRLYPLTKR-RSEGAIPLAA-NYRLVDAVVSNCINSNINKIYALTQFNS-TSLNLHLSRAFSGILRGK 77 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~-~pK~Llpi~g-~~plI~~~i~~l~~~gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~ 77 (429)
+|.+||||||.|+||+|+|.. .||+|+|++| + |||+++++.+...++.+.+|+++... ..+.+.+.+. ...
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~-sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~----~~~- 78 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDL-TMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQL----NKL- 78 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECCCCC-CHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhc----CCc-
Confidence 478999999999999999997 7999999955 6 99999999999888888878887653 3455555431 100
Q ss_pred CCcEEEEeccccccccCcccCcHHHHHHHHHHhhcC-C--CCeEEEEcCceeE-e-ccHHHHHHHHHh---cCCceEEEE
Q 044626 78 DGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEY-P--VTEFLILPGHHLY-K-MDYQRLIEAHRN---NKADITIVA 149 (429)
Q Consensus 78 ~~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~-~--~~~~lvl~gD~i~-~-~~l~~~~~~~~~---~~~~~ti~~ 149 (429)
...+ +... ...+|+.++..|...+.+. + +.-++++++|++. + ..|.+.++...+ .+.-+|+..
T Consensus 79 ~~~i-i~EP--------~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI 149 (478)
T PRK15460 79 TENI-ILEP--------AGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGI 149 (478)
T ss_pred cccE-EecC--------CCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEec
Confidence 0012 2111 1268888888766666432 1 3578899999976 3 336555543321 244344433
Q ss_pred EeccCCCCCCccEEEEcCC-------C--CEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHH
Q 044626 150 LNAIRDKHPGFGLLRVNPV-------N--QVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLK 220 (429)
Q Consensus 150 ~~~~~~~~~~~g~v~~d~~-------~--~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~ 220 (429)
.+.. -...||++..++. + .|..|.|||+......+- ....+++|+|||+|+.+.|.+.++
T Consensus 150 ~Pt~--PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl---------~~G~y~WNsGiF~~~a~~~l~~~~ 218 (478)
T PRK15460 150 VPDL--PETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYV---------ASGEYYWNSGMFLFRAGRYLEELK 218 (478)
T ss_pred CCCC--CCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHH---------HcCCEEEecceeheeHHHHHHHHH
Confidence 3321 2377999987542 2 689999999876433221 125578999999999988766665
Q ss_pred hhCCC--------------Cccc--c-cccchhc---------ccCCceEEEEEecceEEecCCHHHHHHH
Q 044626 221 EYLPE--------------ATDL--G-SEVIPAA---------ISIGMKVEAYLFDGYWEDMRSIEAFYHA 265 (429)
Q Consensus 221 ~~~~~--------------~~~~--~-~d~l~~l---------~~~g~~i~~~~~~~~~~~i~t~~~~~~a 265 (429)
...+. ...+ . .+.++.+ +++-.++.+.+.+-.|.|++++.++.+.
T Consensus 219 ~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~ 289 (478)
T PRK15460 219 KYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEI 289 (478)
T ss_pred HHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHh
Confidence 54320 0011 0 1122222 2222458888888889999999999886
No 63
>PLN02917 CMP-KDO synthetase
Probab=99.81 E-value=4e-18 Score=161.21 Aligned_cols=235 Identities=11% Similarity=0.080 Sum_probs=159.3
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
++.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+. |+++.+.+++.+++.+. +
T Consensus 47 ~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~-VVV~~~~e~I~~~~~~~----~------ 108 (293)
T PLN02917 47 RVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDH-IVVATDDERIAECCRGF----G------ 108 (293)
T ss_pred cEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCE-EEEECChHHHHHHHHHc----C------
Confidence 3569999999999996 6999999999 999999999998764344 33345667787777541 1
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEE--EEeccCCC
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIV--ALNAIRDK 156 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~--~~~~~~~~ 156 (429)
++++...+. +..|++++ ..+++.++. ..+.+++++||. +. ...+..+++.+++. .+++++ +.....++
T Consensus 109 v~vi~~~~~-----~~~GT~~~-~~a~~~l~~-~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~ 180 (293)
T PLN02917 109 ADVIMTSES-----CRNGTERC-NEALKKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPED 180 (293)
T ss_pred CEEEeCCcc-----cCCchHHH-HHHHHhccC-CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHH
Confidence 122211111 12577655 677777752 237899999999 44 66679999988654 333332 22334457
Q ss_pred CCCccEEE--EcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCC---CCccccc
Q 044626 157 HPGFGLLR--VNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLP---EATDLGS 231 (429)
Q Consensus 157 ~~~~g~v~--~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~---~~~~~~~ 231 (429)
+..||.+. .|++|+++.|..++... .+|+++.+. .-.+.++|+|.|+.+.|. .+.+... ..+++.+
T Consensus 181 ~~~ygrv~vv~~~~g~alyfsr~~Ipe-----~kd~~~~~~---~i~~~n~Giy~f~~~~L~-~l~~l~~~n~e~e~yLt 251 (293)
T PLN02917 181 ASDPNRVKCVVDNQGYAIYFSRGLIPY-----NKSGKVNPQ---FPYLLHLGIQSYDAKFLK-IYPELPPTPLQLEEDLE 251 (293)
T ss_pred hcCCCceEEEECCCCeEEEeecCcCCc-----CCCcccccc---cceEEEEEEEEeCHHHHH-HHHcCCCCcccchhccH
Confidence 78898875 67788878777653311 122221111 225789999999999998 5554322 2244456
Q ss_pred ccchhcccCCceEEEEEecceEEecCCHHHHHHHhHhhhcc
Q 044626 232 EVIPAAISIGMKVEAYLFDGYWEDMRSIEAFYHANMECIKR 272 (429)
Q Consensus 232 d~l~~l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~~ 272 (429)
++. ++++|+++..++.+.....++|++++.++++.+.++
T Consensus 252 dl~--~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 252 QLK--VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRER 290 (293)
T ss_pred HHH--HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHc
Confidence 665 457789999888776777999999999999987543
No 64
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.81 E-value=8.8e-19 Score=162.17 Aligned_cols=173 Identities=23% Similarity=0.255 Sum_probs=122.0
Q ss_pred cCCHHHHHHHhHhhhcc-c-----CCCcceeCCCCceecCCccCCCeEE-eeeEe-------eCeEECCCcEEcc-eEe-
Q 044626 256 MRSIEAFYHANMECIKR-S-----NMRYNFYDRDCPVYTMPRCLPPTMI-REAVI-------RDSVVGDGCIINR-CKI- 319 (429)
Q Consensus 256 i~t~~~~~~an~~~l~~-~-----~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i-------~~~~ig~~~~i~~-~~v- 319 (429)
..+|...+.....++.+ . ..+.+.+++++.++.++.++|+++| .+++| .+++||++|.||. +.+
T Consensus 78 ~~~P~~~fA~~~~~f~~~~~~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~ 157 (338)
T COG1044 78 VKDPYLAFAKVAQLFYRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIH 157 (338)
T ss_pred eCCchHHHHHHHHHhccCCccccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEc
Confidence 33465555555555542 2 1245666676766666666666655 33333 4566666666666 666
Q ss_pred eCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcce----eEeCCCCeecce-----------------
Q 044626 320 KGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIP----VGIGEDTQIKKA----------------- 378 (429)
Q Consensus 320 ~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ig~~~~i~~~----------------- 378 (429)
.+++|+++++||++|.|+.+.+++.+.++...-...|.|+++.+.+. |+||.+++|++.
T Consensus 158 ~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~v 237 (338)
T COG1044 158 PNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLV 237 (338)
T ss_pred CCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCcEEccee
Confidence 37888888888888888888888887777755334477766665532 556666665333
Q ss_pred EEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCCccC
Q 044626 379 VIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADGSII 429 (429)
Q Consensus 379 ~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~vv 429 (429)
.|||||+||++|.|.+++++++++++|++|.|+++ +.|..|..|++++.|
T Consensus 238 qIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~-vgI~gh~~IgD~~~I 287 (338)
T COG1044 238 QIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQ-VGIAGHLEIGDGVTI 287 (338)
T ss_pred EEccccEECCCcEEeccceeeccceECCeEEECcc-eeecCceEEcCCCEE
Confidence 49999999999999999999999999999999999 788888888877653
No 65
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.73 E-value=1.2e-16 Score=145.56 Aligned_cols=211 Identities=17% Similarity=0.126 Sum_probs=145.6
Q ss_pred EEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhc-CCCeEEEEeecCh-hHHHHHHhccccCcccCCCCcE
Q 044626 4 AVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINS-NINKIYALTQFNS-TSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 4 avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~~v 81 (429)
|||||||.|+||+ ...||+|+|++|+ |||+|+++.+..+ ++++|+|+++++. +.+.+.+... . .+
T Consensus 2 aiIlAaG~s~R~~---~~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-~--------~~ 68 (217)
T TIGR00453 2 AVIPAAGRGTRFG---SGVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-A--------VP 68 (217)
T ss_pred EEEEcCcccccCC---CCCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-C--------cE
Confidence 7999999999997 3479999999999 9999999999988 7999999998753 4444444321 0 12
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccCCCCCC
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIRDKHPG 159 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~ 159 (429)
++. ... .+..++++.++..++ ..+.++++.||. +. ...+..+++.+++. +++++..+. .
T Consensus 69 ~~~--~~~-------~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~------~ 129 (217)
T TIGR00453 69 KIV--AGG-------DTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPV------A 129 (217)
T ss_pred EEe--CCC-------chHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEec------c
Confidence 222 111 134578898888772 237999999999 55 56678898887654 333333332 2
Q ss_pred ccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchhccc
Q 044626 160 FGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPAAIS 239 (429)
Q Consensus 160 ~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~l~~ 239 (429)
.++..++++|.+..+.++.. -....+ .+.|+...|.++++..... ..+..|....+.+
T Consensus 130 ~~v~~~~~~g~~~~~~~r~~--------------------~~~~~~-p~~f~~~~l~~~~~~~~~~-~~~~~d~~~~~~~ 187 (217)
T TIGR00453 130 DTLKRVEADGFIVETVDREG--------------------LWAAQT-PQAFRTELLKKALARAKEE-GFEITDDASAVEK 187 (217)
T ss_pred ceEEEEcCCCceeecCChHH--------------------eEEEeC-CCcccHHHHHHHHHHHHhc-CCCCCcHHHHHHH
Confidence 24455566677887776421 112233 6899999988777643122 2334566666666
Q ss_pred CCceEEEEEecceEEecCCHHHHHHHhHh
Q 044626 240 IGMKVEAYLFDGYWEDMRSIEAFYHANME 268 (429)
Q Consensus 240 ~g~~i~~~~~~~~~~~i~t~~~~~~an~~ 268 (429)
.|.++..++.+..+++|+||+||..+...
T Consensus 188 ~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 188 LGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred cCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 67889888888777899999999888653
No 66
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.71 E-value=3.8e-16 Score=143.36 Aligned_cols=217 Identities=16% Similarity=0.126 Sum_probs=144.8
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcC-CCeEEEEeecCh-hHHHHHHhccccCcccCCC
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSN-INKIYALTQFNS-TSLNLHLSRAFSGILRGKD 78 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~g-i~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~ 78 (429)
++.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+..++ +++|+|++++.. +.+.+.+.... .
T Consensus 3 ~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~----~--- 71 (227)
T PRK00155 3 MVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAKD----P--- 71 (227)
T ss_pred ceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhccC----C---
Confidence 4679999999999995 3479999999999 99999999998865 899999998765 34433332110 0
Q ss_pred CcEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccCCC
Q 044626 79 GFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIRDK 156 (429)
Q Consensus 79 ~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~ 156 (429)
.+.+. .. ..+.+++++.+++.+.+ .+.++++.||. +. ...+..+++.+...+ ..++..+.. +
T Consensus 72 -~~~~~--~~-------~~~~~~sv~~~l~~~~~--~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~--~ 135 (227)
T PRK00155 72 -KVTVV--AG-------GAERQDSVLNGLQALPD--DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPVK--D 135 (227)
T ss_pred -ceEEe--CC-------cchHHHHHHHHHHhCCC--CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEecc--c
Confidence 12222 11 12468899999887742 37899999999 55 666799999886653 323333322 1
Q ss_pred CCCccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchh
Q 044626 157 HPGFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPA 236 (429)
Q Consensus 157 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~ 236 (429)
++..++++|.+..+.++. .....-+.+.|+.+.|.++++... +...+..|....
T Consensus 136 ----~~~~v~~~g~~~~~~~r~---------------------~~~~~~~p~~f~~~~l~~~~~~~~-~~~~~~~d~~~~ 189 (227)
T PRK00155 136 ----TIKRSDDGGGIVDTPDRS---------------------GLWAAQTPQGFRIELLREALARAL-AEGKTITDDASA 189 (227)
T ss_pred ----cEEEEcCCCceeecCChH---------------------HheeeeCCccchHHHHHHHHHHHH-hcCCCcCcHHHH
Confidence 222334456655553211 112233478999999887776532 223344555555
Q ss_pred cccCCceEEEEEecceEEecCCHHHHHHHhHhhh
Q 044626 237 AISIGMKVEAYLFDGYWEDMRSIEAFYHANMECI 270 (429)
Q Consensus 237 l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l 270 (429)
+.+.|.++..++.+..+.+|+|++||..+...+.
T Consensus 190 ~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 190 VERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred HHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 5555677888887777889999999999977654
No 67
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.69 E-value=7.5e-16 Score=140.48 Aligned_cols=213 Identities=16% Similarity=0.130 Sum_probs=145.3
Q ss_pred EEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcC-CCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 3 AAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSN-INKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 3 ~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
.|||||||.|+||+. ..||+|+|++|+ |||+|+++.+...+ +++|+|++++........+.. +. .. ..+
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~-~~----~~~ 71 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAK-YG-LS----KVV 71 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHh-cc-cC----CCe
Confidence 589999999999984 379999999999 99999999999876 999999998766544444321 11 00 012
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccCCCCCC
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIRDKHPG 159 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~ 159 (429)
.+. ... .+..++++.++++++....+.++++.||+ +. ...++.+++.+...++. +...+..
T Consensus 72 ~~~--~~~-------~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~--~~~~~~~------ 134 (218)
T cd02516 72 KIV--EGG-------ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAA--IPAVPVT------ 134 (218)
T ss_pred EEE--CCc-------hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcE--EEEEecc------
Confidence 222 111 25578899999887421237899999998 55 66679999988655432 2222221
Q ss_pred ccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchhccc
Q 044626 160 FGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPAAIS 239 (429)
Q Consensus 160 ~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~l~~ 239 (429)
.++...|++|.+..+.++.. -....++ ++|+.+.|.+++.... +...+.+|....+.+
T Consensus 135 ~~~~~~~~~g~~~~~~~r~~--------------------~~~~~~P-~~f~~~~~~~~~~~~~-~~~~~~td~~~~~~~ 192 (218)
T cd02516 135 DTIKRVDDDGVVVETLDREK--------------------LWAAQTP-QAFRLDLLLKAHRQAS-EEGEEFTDDASLVEA 192 (218)
T ss_pred ccEEEecCCCceeecCChHH--------------------hhhhcCC-CcccHHHHHHHHHHHH-hcCCCcCcHHHHHHH
Confidence 12344566788888876522 2345666 8999999988876542 223445666666666
Q ss_pred CCceEEEEEecceEEecCCHHHHHH
Q 044626 240 IGMKVEAYLFDGYWEDMRSIEAFYH 264 (429)
Q Consensus 240 ~g~~i~~~~~~~~~~~i~t~~~~~~ 264 (429)
.+.++..++.+..-++|+||+||..
T Consensus 193 ~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 193 AGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred cCCCeEEEecCcccccCCCHHHHhh
Confidence 5677888777666679999999954
No 68
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.69 E-value=3.7e-15 Score=137.31 Aligned_cols=229 Identities=12% Similarity=0.090 Sum_probs=142.6
Q ss_pred EEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcEE
Q 044626 3 AAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVE 82 (429)
Q Consensus 3 ~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~ 82 (429)
.+||||+|.|+||. +|+|+|++|+ |||+|+++.+..+++++|+|++.. +.+.+++.+ ++. +
T Consensus 1 ~~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~~----~g~------~ 61 (238)
T TIGR00466 1 MVIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQK----FGI------E 61 (238)
T ss_pred CEEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHHH----cCC------E
Confidence 37999999999995 7999999999 999999999998889999988753 446666654 221 1
Q ss_pred EEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccCC-C--C
Q 044626 83 VIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIRD-K--H 157 (429)
Q Consensus 83 i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~-~--~ 157 (429)
++...+. ...|+ +.+..+.+.+.....+.++++.||. +. ...+..+++.+.+.+.+++.+..+.... + .
T Consensus 62 ~v~~~~~-----~~~Gt-~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~ 135 (238)
T TIGR00466 62 VCMTSKH-----HNSGT-ERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFN 135 (238)
T ss_pred EEEeCCC-----CCChh-HHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccC
Confidence 2211111 11354 4455555444211236789999999 55 5567889998866556666666554321 1 1
Q ss_pred CCccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCccccc--ccch
Q 044626 158 PGFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGS--EVIP 235 (429)
Q Consensus 158 ~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~--d~l~ 235 (429)
++...+..|.+|+...|...+....-..+. ....++. ...+...|+|.|++++|.++.... ++.-+..+ +-|+
T Consensus 136 p~~vk~v~~~~g~alyfsr~~ip~~R~~~~-~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~~-~~~le~~e~leqlr 210 (238)
T TIGR00466 136 PNAVKVVLDSQGYALYFSRSLIPFDRDFFA-KRQTPVG---DNLLRHIGIYGYRAGFIEEYVAWK-PCVLEEIEKLEQLR 210 (238)
T ss_pred CCceEEEeCCCCeEEEecCCCCCCCCCccc-ccccccc---cceeEEEEEEeCCHHHHHHHHhCC-CCcccccchhHHHh
Confidence 223344457778877776653311000000 0000110 125779999999999998666532 22222222 2333
Q ss_pred hcccCCceEEEEEecce-EEecCCHHHH
Q 044626 236 AAISIGMKVEAYLFDGY-WEDMRSIEAF 262 (429)
Q Consensus 236 ~l~~~g~~i~~~~~~~~-~~~i~t~~~~ 262 (429)
. +++|++|.+...+.. -..++||+|+
T Consensus 211 ~-le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 211 V-LYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred h-hhcCCceEEEEeCCCCCCCCCChHHc
Confidence 3 456899999888765 4689999986
No 69
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.67 E-value=6.7e-16 Score=144.00 Aligned_cols=148 Identities=19% Similarity=0.190 Sum_probs=103.4
Q ss_pred CCcceeCCCCceecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEee-CcEEcCCcEECCCCEEec------------Ce
Q 044626 275 MRYNFYDRDCPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIED------------SV 340 (429)
Q Consensus 275 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~------------~~ 340 (429)
.+.+++++++.+++++.|+|.+++. +++.||++|.|++ +.|. +++||++|.|++++.|++ .+
T Consensus 6 ~p~a~I~~~a~Ig~~v~Igp~~~I~----~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v 81 (262)
T PRK05289 6 HPTAIVEPGAKIGENVEIGPFCVIG----PNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRL 81 (262)
T ss_pred CCCCEECCCCEECCCCEECCCeEEC----CCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeE
Confidence 4556677777777777777766664 5677788887777 6664 688888888888887765 34
Q ss_pred EECC-cccccccccccCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCE----
Q 044626 341 IMGA-DFYQQGEDIQSSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGI---- 414 (429)
Q Consensus 341 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~---- 414 (429)
++++ ..++.+..+.+.. ..++..+.||+++.| .++.|+++|.||+++.+.++..+.++.++|++++|++++
T Consensus 82 ~IG~~~~I~e~~~I~~~~---~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~ 158 (262)
T PRK05289 82 VIGDNNTIREFVTINRGT---VQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQ 158 (262)
T ss_pred EECCCCEECCCeEEeccc---ccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecC
Confidence 4444 2233333332221 011223788998888 788889999999999998888888888888888888773
Q ss_pred -EEEcCCCEeCCCccC
Q 044626 415 -VVIIHGAEIADGSII 429 (429)
Q Consensus 415 -~~i~~~~~i~~~~vv 429 (429)
++||++++|++||+|
T Consensus 159 ~v~Ig~~~~Ig~gs~V 174 (262)
T PRK05289 159 FVRIGAHAMVGGMSGV 174 (262)
T ss_pred CCEECCCCEEeeecce
Confidence 667777788777765
No 70
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.67 E-value=2e-15 Score=144.69 Aligned_cols=62 Identities=29% Similarity=0.406 Sum_probs=47.5
Q ss_pred EeCCCCee-cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCE-----EEEcCCCEeCCCccC
Q 044626 368 GIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGI-----VVIIHGAEIADGSII 429 (429)
Q Consensus 368 ~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~-----~~i~~~~~i~~~~vv 429 (429)
.||+++.| ..+.|+++|+||++|.|+++.++.++.++|+++++++++ +.||++++|+++|+|
T Consensus 219 ~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V 286 (324)
T TIGR01853 219 IIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV 286 (324)
T ss_pred eecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence 34444444 355788999999999999999999999999999998773 566677777777654
No 71
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.67 E-value=7.2e-16 Score=135.03 Aligned_cols=145 Identities=21% Similarity=0.213 Sum_probs=108.5
Q ss_pred CCcceeCCCCceecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEee-CcEEcCCcEECCCCEEec------------Ce
Q 044626 275 MRYNFYDRDCPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIED------------SV 340 (429)
Q Consensus 275 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~------------~~ 340 (429)
++.+.+.|.+.+++++.|+|.|.|. .++.||++++|++ ++|+ .|+||++++|.+.+.|+. .+
T Consensus 7 HPTAiIe~gA~ig~~V~IGpf~iIg----~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l 82 (260)
T COG1043 7 HPTAIIEPGAEIGEDVKIGPFCIIG----PNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRL 82 (260)
T ss_pred CcceeeCCCCCcCCCCEECceEEEC----CCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEE
Confidence 5677788888888888888887775 6788888888888 7776 688888888877776632 12
Q ss_pred EECCcccccccccccCCccc----cCCcceeEeCCCCee-cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCE-
Q 044626 341 IMGADFYQQGEDIQSSGKCI----NHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGI- 414 (429)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~- 414 (429)
++++ +..++-.. +| ..+...+.||+++.+ .++.|+|+|+||.+|++.|++.+++|.++|+++++|+.+
T Consensus 83 ~IG~-----~n~IRE~v-Ti~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~sa 156 (260)
T COG1043 83 IIGD-----NNTIREFV-TIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSA 156 (260)
T ss_pred EECC-----CCeEeeEE-EEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcce
Confidence 2222 11111111 11 122233889999887 999999999999999999999999999999999999875
Q ss_pred ----EEEcCCCEeCCCccC
Q 044626 415 ----VVIIHGAEIADGSII 429 (429)
Q Consensus 415 ----~~i~~~~~i~~~~vv 429 (429)
|+||.++.||..|.|
T Consensus 157 VHQFvrIG~~amiGg~S~v 175 (260)
T COG1043 157 VHQFVRIGAHAMIGGLSAV 175 (260)
T ss_pred EEEEEEEcchheecccccc
Confidence 888888888876643
No 72
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.66 E-value=4.9e-16 Score=141.50 Aligned_cols=145 Identities=31% Similarity=0.409 Sum_probs=87.7
Q ss_pred cccchhcccCCceEEEEEecceEEecCCHHHHHHHhHhhhcccCCCc---ceeCCCC-ceecCCccCCCeEEeeeEeeCe
Q 044626 231 SEVIPAAISIGMKVEAYLFDGYWEDMRSIEAFYHANMECIKRSNMRY---NFYDRDC-PVYTMPRCLPPTMIREAVIRDS 306 (429)
Q Consensus 231 ~d~l~~l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~~~~~~~---~~~~~~~-~~~~~~~i~~~~~i~~~~i~~~ 306 (429)
.|.++.|++.+ .+.+++||.|+ ++|+++|+.+|....... ....+.. .++.++.|++++.+. +++
T Consensus 31 ~~~~~~~~~~~----~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~----g~v 99 (231)
T TIGR03532 31 PESIKKFGSGH----SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIR----DQV 99 (231)
T ss_pred chheEEEecCC----cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEe----CCe
Confidence 68889988764 77788999999 999999999998652100 0001111 123334444444443 345
Q ss_pred EECCCcEEcc-eEee-CcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecc-------
Q 044626 307 VVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKK------- 377 (429)
Q Consensus 307 ~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~------- 377 (429)
.||++|.|++ +.+. +++||++|.|++++.|..++++++. |.||.++.+.+
T Consensus 100 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~---------------------~~Ig~~~~I~~~~~~~~~ 158 (231)
T TIGR03532 100 IIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKN---------------------VHIGAGAVLAGVIEPPSA 158 (231)
T ss_pred EECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCC---------------------cEEcCCcEEccccccccC
Confidence 5555555555 4442 6777777777777777644444432 67777777753
Q ss_pred --eEEecCcEECCCcEEecCCCCCCCeeecCCeEEccC
Q 044626 378 --AVIDKNARIGKNVLIINKDGVQEGDREANGYIISEG 413 (429)
Q Consensus 378 --~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~ 413 (429)
++||++|.||++++|. .+.++|++++|+++
T Consensus 159 ~~v~IGd~v~IG~gsvI~------~g~~Ig~~~~Igag 190 (231)
T TIGR03532 159 KPVVIEDNVLIGANAVIL------EGVRVGKGAVVAAG 190 (231)
T ss_pred CCeEECCCcEECCCCEEc------CCCEECCCCEECCC
Confidence 5666666666666665 23344444444444
No 73
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.65 E-value=6.2e-15 Score=143.62 Aligned_cols=207 Identities=15% Similarity=0.111 Sum_probs=139.0
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcC-CCeEEEEeecChhHHHHHHhccccCcccCCCC
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSN-INKIYALTQFNSTSLNLHLSRAFSGILRGKDG 79 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 79 (429)
++.+||||||.|+||. ...||+|+|++|+ |||+|+++.|..++ +++|+|+++++...+.+.+...+.
T Consensus 5 ~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~~-------- 72 (378)
T PRK09382 5 DISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEIK-------- 72 (378)
T ss_pred cceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccCC--------
Confidence 3679999999999995 4579999999999 99999999999987 799999998765544443322111
Q ss_pred cEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eEe-ccHHHHHHHHHhcCCceEEEEEeccCCCC
Q 044626 80 FVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LYK-MDYQRLIEAHRNNKADITIVALNAIRDKH 157 (429)
Q Consensus 80 ~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~~-~~l~~~~~~~~~~~~~~ti~~~~~~~~~~ 157 (429)
.+.++ ... .+..++++.+++.++. +.++++.||. +.+ ..+..+++.++.. ..++...+.. ++
T Consensus 73 ~v~~v--~gG-------~~r~~SV~~gL~~l~~---d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~pv~--Dt 136 (378)
T PRK09382 73 FVTLV--TGG-------ATRQESVRNALEALDS---EYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPALPVA--DT 136 (378)
T ss_pred eEEEe--CCC-------chHHHHHHHHHHhcCC---CeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEEEec--cC
Confidence 12222 211 2457889999988853 7899999998 554 4468888876543 4555544443 44
Q ss_pred CCccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchhc
Q 044626 158 PGFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPAA 237 (429)
Q Consensus 158 ~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~l 237 (429)
..|+...+| ...+..+ +.|+ .|+...+.+.. ... ...+|....+
T Consensus 137 ik~~~~tld-R~~l~~~-QTPQ-----------------------------~f~~~~l~~a~----~~~-~~~TDd~sl~ 180 (378)
T PRK09382 137 LKRANETVD-REGLKLI-QTPQ-----------------------------LSRTKTLKAAA----DGR-GDFTDDSSAA 180 (378)
T ss_pred cEEeeeEcC-cccEEEE-ECCC-----------------------------CCCHHHHHHHH----hCC-CCcccHHHHH
Confidence 455433333 2334333 4443 22222232221 112 2336766777
Q ss_pred ccCCceEEEEEecceEEecCCHHHHHHHhHhhhc
Q 044626 238 ISIGMKVEAYLFDGYWEDMRSIEAFYHANMECIK 271 (429)
Q Consensus 238 ~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~ 271 (429)
...|.++..++.+..|++|++|+|+..++..+..
T Consensus 181 ~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 181 EAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred HHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 7778899999999999999999999999887654
No 74
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.65 E-value=2.3e-15 Score=140.24 Aligned_cols=147 Identities=20% Similarity=0.196 Sum_probs=88.1
Q ss_pred CcceeCCCCceecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEee-CcEEcCCcEECCCCEEec------------CeE
Q 044626 276 RYNFYDRDCPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIED------------SVI 341 (429)
Q Consensus 276 ~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~------------~~~ 341 (429)
+.+++++++.+++++.|+|.+.+. +++.||++|.|++ +.+. +++||++|.|++++.|.+ .++
T Consensus 4 ~~a~I~~~a~ig~~~~I~p~~~I~----~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~ 79 (254)
T cd03351 4 PTAIVDPGAKIGENVEIGPFCVIG----PNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLE 79 (254)
T ss_pred CCCEECCCCEECCCCEECCCcEEC----CCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEE
Confidence 345566666666666666666653 3455555555555 4443 466666666666665543 333
Q ss_pred ECC-cccccccccccCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCE-----
Q 044626 342 MGA-DFYQQGEDIQSSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGI----- 414 (429)
Q Consensus 342 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~----- 414 (429)
+++ ..++++....+..+ .+...+.||+++.| .++.|+++|.||++|.|.++..+..+.++|++++|++++
T Consensus 80 IG~~~~Ig~~~~I~~~~~---~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~ 156 (254)
T cd03351 80 IGDNNTIREFVTIHRGTA---QGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF 156 (254)
T ss_pred ECCCCEECCccEEecccc---CCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC
Confidence 333 22222222221110 01112778888888 677788888888888888877777777777777777663
Q ss_pred EEEcCCCEeCCCccC
Q 044626 415 VVIIHGAEIADGSII 429 (429)
Q Consensus 415 ~~i~~~~~i~~~~vv 429 (429)
+.||++++|+++|+|
T Consensus 157 v~Ig~~~~Ig~~s~V 171 (254)
T cd03351 157 CRIGRHAMVGGGSGV 171 (254)
T ss_pred cEECCCCEECcCCEE
Confidence 677777777777764
No 75
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.64 E-value=3.4e-15 Score=129.65 Aligned_cols=122 Identities=19% Similarity=0.303 Sum_probs=93.3
Q ss_pred CCCCceecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEee-CcEEcCCcEECCCCEEecCeEECCcccccccccccCCc
Q 044626 281 DRDCPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGK 358 (429)
Q Consensus 281 ~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~ 358 (429)
.+...+++++.|++.+.+. .++.||++|.|++ +.+. +++||++|.|++++.|.++++..+
T Consensus 15 ~~~v~ig~~~~I~~~a~i~----~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~-------------- 76 (163)
T cd05636 15 KGPVWIGEGAIVRSGAYIE----GPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG-------------- 76 (163)
T ss_pred CCCeEEcCCCEECCCCEEe----CCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC--------------
Confidence 3334444444444444443 4678888888888 8886 799999999999999998887776
Q ss_pred cccCCcceeEeCCCCeecceEEecCcEECCCcEEecC------------------------CCCCCCeeecCCeEEccCE
Q 044626 359 CINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINK------------------------DGVQEGDREANGYIISEGI 414 (429)
Q Consensus 359 ~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~------------------------~~~~~~~~~~~~~~i~~~~ 414 (429)
+.|++++.+.+++|++++.|++++++.+. ..++++..+|.++.|.++
T Consensus 77 --------~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g- 147 (163)
T cd05636 77 --------TKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPG- 147 (163)
T ss_pred --------CEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCC-
Confidence 89999999999999999999999998652 334455566666666666
Q ss_pred EEEcCCCEeCCCccC
Q 044626 415 VVIIHGAEIADGSII 429 (429)
Q Consensus 415 ~~i~~~~~i~~~~vv 429 (429)
+.|+++++|++|++|
T Consensus 148 ~~ig~~~~i~agsvV 162 (163)
T cd05636 148 VKIGPGSWVYPGCVV 162 (163)
T ss_pred cEECCCCEECCCcEe
Confidence 788888999998875
No 76
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.64 E-value=2.3e-15 Score=132.69 Aligned_cols=122 Identities=19% Similarity=0.239 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
|.|||||||+|+||++ .||+|+|++|+ |||+|+++.|..+++++|+++++++.+.++.++.+...
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~~---------- 65 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAYK---------- 65 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcCc----------
Confidence 8899999999999975 79999999999 99999999999889999999999888888888875321
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeE--eccHHHHHHHHHhcCCceEEE
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLY--KMDYQRLIEAHRNNKADITIV 148 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~--~~~l~~~~~~~~~~~~~~ti~ 148 (429)
.+. ... ..|...++..+++.+.. .++|++++||+-+ ...+..+++.+...+.....+
T Consensus 66 ~~~--~~~------g~G~~~~l~~al~~~~~--~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~ 124 (183)
T TIGR00454 66 DYK--NAS------GKGYIEDLNECIGELYF--SEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAV 124 (183)
T ss_pred EEE--ecC------CCCHHHHHHHHhhcccC--CCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 121 111 25888888888875432 3799999999933 667799999887765554343
No 77
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.63 E-value=4.6e-15 Score=137.18 Aligned_cols=147 Identities=24% Similarity=0.286 Sum_probs=102.0
Q ss_pred CCcceeCCCCceecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEee-CcEEcCCcEECCCCEEec------------Ce
Q 044626 275 MRYNFYDRDCPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIED------------SV 340 (429)
Q Consensus 275 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~------------~~ 340 (429)
.+.+++++++.+++++.|+|.+.+. +++.||++|+|++ +.+. +++||++|.|++++.|+. .+
T Consensus 3 hp~a~I~~~a~Ig~~v~Igp~~~I~----~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v 78 (255)
T PRK12461 3 HPTAVIDPSAKLGSGVEIGPFAVIG----ANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRL 78 (255)
T ss_pred CCCCEECCCCEECCCCEECCCCEEC----CCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCcccee
Confidence 3456777777777777777777664 5677777777777 6664 677777777777777753 33
Q ss_pred EECC-cccccccccccCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCE----
Q 044626 341 IMGA-DFYQQGEDIQSSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGI---- 414 (429)
Q Consensus 341 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~---- 414 (429)
.+++ ..++.+..+.+.. ..+..+.||++|.+ .++.|+++|.||++|.|.+++.+.++.++|++++|+.++
T Consensus 79 ~IG~~~~I~e~vtI~~gt----~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~ 154 (255)
T PRK12461 79 EIGDRNVIREGVTIHRGT----KGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQ 154 (255)
T ss_pred EECCceEECCccEEecCc----ccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECC
Confidence 3433 2222222221111 11223789999888 789999999999999999999999999999999999883
Q ss_pred -EEEcCCCEeCCCccC
Q 044626 415 -VVIIHGAEIADGSII 429 (429)
Q Consensus 415 -~~i~~~~~i~~~~vv 429 (429)
++||+++.|+++|+|
T Consensus 155 ~~~IG~~a~Vg~gs~V 170 (255)
T PRK12461 155 FCRIGALAMMAGGSRI 170 (255)
T ss_pred CCEECCCcEECCCceE
Confidence 556666666666653
No 78
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.62 E-value=1.9e-14 Score=132.30 Aligned_cols=219 Identities=15% Similarity=0.089 Sum_probs=142.2
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcC-CCeEEEEeecCh-hHHHHHHhccccCcccCCCC
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSN-INKIYALTQFNS-TSLNLHLSRAFSGILRGKDG 79 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~g-i~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~ 79 (429)
+.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+..++ +++|+|+++... ..+.+++.+ +. ... .
T Consensus 3 ~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-~~---~~~-~ 73 (230)
T PRK13385 3 YELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQ-LN---VAD-Q 73 (230)
T ss_pred eEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHh-cC---cCC-C
Confidence 468999999999997 4579999999999 99999999998764 899999987643 334444443 11 100 0
Q ss_pred cEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccCCCC
Q 044626 80 FVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIRDKH 157 (429)
Q Consensus 80 ~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~ 157 (429)
.++++ .. + .+..++++.+++.++. .+.++++.||. +. ...+..+++.+.+.++...+ .+..
T Consensus 74 ~~~~v--~~---g----~~r~~sv~~gl~~~~~--~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~--~~~~---- 136 (230)
T PRK13385 74 RVEVV--KG---G----TERQESVAAGLDRIGN--EDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICA--VEVK---- 136 (230)
T ss_pred ceEEc--CC---C----chHHHHHHHHHHhccC--CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEE--Eecc----
Confidence 12222 11 0 2345899999887753 36788889999 55 55568899888765433322 2322
Q ss_pred CCccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchhc
Q 044626 158 PGFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPAA 237 (429)
Q Consensus 158 ~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~l 237 (429)
..+... .++.+....++. ..+..-+.+.|+.+.|.+..+... ....+.+|....+
T Consensus 137 --dti~~~-~~~~~~~~i~r~---------------------~~~~~qtpq~f~~~~l~~~~~~~~-~~~~~~td~~~~~ 191 (230)
T PRK13385 137 --DTVKRV-KDKQVIETVDRN---------------------ELWQGQTPQAFELKILQKAHRLAS-EQQFLGTDEASLV 191 (230)
T ss_pred --ceEEEE-cCCeeEeccCHH---------------------HHhhhcCCceeeHHHHHHHHHHHH-hcCCCcCcHHHHH
Confidence 122222 234443332211 122334578999888877766431 2223345655555
Q ss_pred ccCCceEEEEEecceEEecCCHHHHHHHhHhhhc
Q 044626 238 ISIGMKVEAYLFDGYWEDMRSIEAFYHANMECIK 271 (429)
Q Consensus 238 ~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~ 271 (429)
.+.|.++..++.+...+.|+||+|+..|...+..
T Consensus 192 ~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~~ 225 (230)
T PRK13385 192 ERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQG 225 (230)
T ss_pred HHcCCCEEEEECCcccCcCCCHHHHHHHHHHHhh
Confidence 5567889999888888999999999999876643
No 79
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.62 E-value=4.4e-15 Score=138.26 Aligned_cols=63 Identities=21% Similarity=0.211 Sum_probs=39.6
Q ss_pred eEeCCCCee-cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCE-----EEEcCCCEeCCCccC
Q 044626 367 VGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGI-----VVIIHGAEIADGSII 429 (429)
Q Consensus 367 ~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~-----~~i~~~~~i~~~~vv 429 (429)
+.||+++.| .++.|+++|.||++|.++++..+..+.++|++++|+.++ +.|++++.|+++++|
T Consensus 102 ~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 170 (254)
T TIGR01852 102 TRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAV 170 (254)
T ss_pred EEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeE
Confidence 677777777 555666666666666666555555555555555555552 666777777777664
No 80
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.60 E-value=2.3e-14 Score=139.21 Aligned_cols=63 Identities=24% Similarity=0.300 Sum_probs=47.7
Q ss_pred eEeCCCCee-cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCE-----EEEcCCCEeCCCccC
Q 044626 367 VGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGI-----VVIIHGAEIADGSII 429 (429)
Q Consensus 367 ~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~-----~~i~~~~~i~~~~vv 429 (429)
+.||+++.| ..+.|+++|+||++|.|..+..+.++.++|++++|+.++ +.||++++|+++++|
T Consensus 226 t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v 294 (343)
T PRK00892 226 TVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGV 294 (343)
T ss_pred ceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCee
Confidence 456666666 456788899999999999888888899999999998773 556666666666653
No 81
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.60 E-value=8.3e-15 Score=126.84 Aligned_cols=119 Identities=23% Similarity=0.316 Sum_probs=93.5
Q ss_pred EEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcEEE
Q 044626 4 AVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEV 83 (429)
Q Consensus 4 avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i 83 (429)
|||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++|+|++++ +++.+++... + +++
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~----~------~~~ 62 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY----G------IKV 62 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT----T------SEE
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc----C------ceE
Confidence 7999999999998 49999999999 999999999999999999999987 4566555431 1 223
Q ss_pred EeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEE
Q 044626 84 IAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIV 148 (429)
Q Consensus 84 ~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~ 148 (429)
+... .|..|+..+++.++..+. ..++|++++||+ +. ...+..+++.+.+.++++++.
T Consensus 63 v~~~------~~~~G~~~sl~~a~~~~~--~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~ 121 (160)
T PF12804_consen 63 VVDP------EPGQGPLASLLAALSQLP--SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVP 121 (160)
T ss_dssp EE-S------TSSCSHHHHHHHHHHTST--TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEE
T ss_pred EEec------cccCChHHHHHHHHHhcc--cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEE
Confidence 3221 123699999999998873 249999999999 43 555789999988777776554
No 82
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.60 E-value=1.7e-14 Score=128.98 Aligned_cols=147 Identities=25% Similarity=0.276 Sum_probs=98.1
Q ss_pred cceeCCCCceecCCccCCCeEE-eeeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECC-ccccccccc
Q 044626 277 YNFYDRDCPVYTMPRCLPPTMI-REAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGA-DFYQQGEDI 353 (429)
Q Consensus 277 ~~~~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~-~~~~~~~~~ 353 (429)
...+++.+.+.+++.|++++.| +++.+.++.||++|.|++ +.+.+++|++++.|++++.|...+++++ ..++++...
T Consensus 21 ~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i 100 (193)
T cd03353 21 DVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEI 100 (193)
T ss_pred CcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEE
Confidence 3455566666666666666666 567777778888888888 8888888888888888888876555553 233333333
Q ss_pred ccCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEecCCCC-------CCCeeecCCeEEccCEEEEcCCCEeCCC
Q 044626 354 QSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINKDGV-------QEGDREANGYIISEGIVVIIHGAEIADG 426 (429)
Q Consensus 354 ~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~~~-------~~~~~~~~~~~i~~~~~~i~~~~~i~~~ 426 (429)
+++. .+..+.|++.+.+.++.||++|.||+++.+.+.... +++..+|.++.+.++ ++|++++.|++|
T Consensus 101 ~~s~-----ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~-~~Ig~~~~i~~g 174 (193)
T cd03353 101 KKST-----IGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAP-VTIGDGATIAAG 174 (193)
T ss_pred ecce-----EcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCC-cEECCCcEECCC
Confidence 3222 111245555666677889999999999988765433 334444444455555 788889999998
Q ss_pred ccC
Q 044626 427 SII 429 (429)
Q Consensus 427 ~vv 429 (429)
++|
T Consensus 175 s~V 177 (193)
T cd03353 175 STI 177 (193)
T ss_pred CEE
Confidence 875
No 83
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.59 E-value=3.9e-14 Score=125.97 Aligned_cols=120 Identities=18% Similarity=0.272 Sum_probs=89.1
Q ss_pred EEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcEEE
Q 044626 4 AVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEV 83 (429)
Q Consensus 4 avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i 83 (429)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++|+|++++..+++.+++...+ + +.+
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~~---~------v~~ 66 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLANHS---N------ITL 66 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhccCC---C------eEE
Confidence 7999999999998 59999999999 9999999999988999999999987665555443211 1 223
Q ss_pred EeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceE
Q 044626 84 IAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADIT 146 (429)
Q Consensus 84 ~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~t 146 (429)
+... .+..|+.++++.+++... ..+.+++++||+ +. ...++.+++.+...+..++
T Consensus 67 v~~~------~~~~g~~~si~~~l~~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~ 123 (188)
T TIGR03310 67 VHNP------QYAEGQSSSIKLGLELPV--QSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIV 123 (188)
T ss_pred EECc------ChhcCHHHHHHHHhcCCC--CCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEE
Confidence 3211 123689999999886211 237899999999 44 5567888888766555443
No 84
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.58 E-value=2.1e-13 Score=124.70 Aligned_cols=213 Identities=17% Similarity=0.208 Sum_probs=133.7
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcC-CCeEEEEeecChhHHHHHHhccccCcccCCCC
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSN-INKIYALTQFNSTSLNLHLSRAFSGILRGKDG 79 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 79 (429)
|+.|||||+|.|+||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++ ..+.+.+++.+ ++..
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~--~~~~i~~~~~~----~~~~--- 64 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVST--DDEEIAEVARK----YGAE--- 64 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEEC--CcHHHHHHHHH----hCCC---
Confidence 5789999999999996 5999999999 99999999999887 78887766 34455555543 1110
Q ss_pred cEEEE-eccccccccCcccCcHHHHHHHHHHhhcC--CCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccC
Q 044626 80 FVEVI-AAYQSLEDQDWFQGNADAIRRCLWVLEEY--PVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIR 154 (429)
Q Consensus 80 ~v~i~-~~~~~~~~~~~~~Gt~~al~~~~~~i~~~--~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~ 154 (429)
+.+. +.+.. .+ ..|+.++++++++.++.. ..+.++++.||. +. ...+..+++.+...+++.++...+..
T Consensus 65 -~~~~~~~~~~-~~---~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~- 138 (223)
T cd02513 65 -VPFLRPAELA-TD---TASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFH- 138 (223)
T ss_pred -ceeeCChHHC-CC---CCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecC-
Confidence 0011 11000 01 248889999999887531 137899999999 44 67789999998877777666554432
Q ss_pred CCCCCccEEEEcCCC-CEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCccccccc
Q 044626 155 DKHPGFGLLRVNPVN-QVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEV 233 (429)
Q Consensus 155 ~~~~~~g~v~~d~~~-~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~ 233 (429)
+..-++... +++| .+..+.++.... . +. .......++|+|+++++.|.+. .. +
T Consensus 139 -~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~---q~-~~~~~~~n~~~y~~~~~~~~~~-------~~-~---- 192 (223)
T cd02513 139 -RFPWRALGL-DDNGLEPVNYPEDKRTR--------R---QD-LPPAYHENGAIYIAKREALLES-------NS-F---- 192 (223)
T ss_pred -cCcHHheee-ccCCceeccCcccccCC--------c---CC-ChhHeeECCEEEEEEHHHHHhc-------CC-c----
Confidence 222233332 2222 111111110000 0 00 0123456889999999877521 11 1
Q ss_pred chhcccCCceEEEEEecc-eEEecCCHHHHHHHhH
Q 044626 234 IPAAISIGMKVEAYLFDG-YWEDMRSIEAFYHANM 267 (429)
Q Consensus 234 l~~l~~~g~~i~~~~~~~-~~~~i~t~~~~~~an~ 267 (429)
+ |.++..+..+. ...+|++++|+..+..
T Consensus 193 ----~--g~~~~~~~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 193 ----F--GGKTGPYEMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred ----c--CCCeEEEEeCccceeCCCCHHHHHHHHH
Confidence 1 45676666654 6899999999988865
No 85
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.55 E-value=2.3e-13 Score=125.74 Aligned_cols=218 Identities=10% Similarity=0.048 Sum_probs=133.8
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhc-CCCeEEEEeecChhH-HHHHHhccccCcccCCCC
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINS-NINKIYALTQFNSTS-LNLHLSRAFSGILRGKDG 79 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~-gi~~I~Iv~~~~~~~-i~~~l~~~~~~~~~~~~~ 79 (429)
+.+||||||.|+||+ ...||+|++++|+ |||+|+++.+... ++++|+|+++++... +.+.+.+ + +.
T Consensus 25 i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~-~---~~---- 92 (252)
T PLN02728 25 VSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN-I---DV---- 92 (252)
T ss_pred eEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh-c---CC----
Confidence 579999999999997 4579999999999 9999999999884 799999999876433 3333332 1 11
Q ss_pred cEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccCCCC
Q 044626 80 FVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIRDKH 157 (429)
Q Consensus 80 ~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~ 157 (429)
.+ ...... .+..+++++++..+... .+-+++..+|. +. ...+..+++...+.++. +...+..
T Consensus 93 ~i--~~v~gg-------~~r~~SV~~gl~~l~~~-~~~VlihDaarP~vs~~~i~~li~~~~~~ga~--i~~~~~~---- 156 (252)
T PLN02728 93 PL--KFALPG-------KERQDSVFNGLQEVDAN-SELVCIHDSARPLVTSADIEKVLKDAAVHGAA--VLGVPVK---- 156 (252)
T ss_pred ce--EEcCCC-------CchHHHHHHHHHhccCC-CCEEEEecCcCCCCCHHHHHHHHHHHhhCCeE--EEeecch----
Confidence 12 222211 24467899998877531 13444555445 44 44458888877665533 3333322
Q ss_pred CCccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchhc
Q 044626 158 PGFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPAA 237 (429)
Q Consensus 158 ~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~l 237 (429)
..+..+++++.+... ++.... +.--.-..|+.+.|.+..+....+ ....+|-...+
T Consensus 157 --dtik~v~~~~~v~~t---~~R~~l------------------~~~QTPQ~F~~~~l~~a~~~~~~~-~~~~TDd~~~~ 212 (252)
T PLN02728 157 --ATIKEANSDSFVVKT---LDRKRL------------------WEMQTPQVIKPELLRRGFELVERE-GLEVTDDVSIV 212 (252)
T ss_pred --hhEEEecCCCceeec---cChHHe------------------EEEeCCccchHHHHHHHHHHHHhc-CCCcCcHHHHH
Confidence 123334445544333 221110 111111267777776666553222 22235544444
Q ss_pred ccCCceEEEEEecceEEecCCHHHHHHHhHhhhc
Q 044626 238 ISIGMKVEAYLFDGYWEDMRSIEAFYHANMECIK 271 (429)
Q Consensus 238 ~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l~ 271 (429)
...|.++...+-+..-+.|.+|+|+..+...+.+
T Consensus 213 ~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~ 246 (252)
T PLN02728 213 EALKHPVFITEGSYTNIKVTTPDDMLVAERILNE 246 (252)
T ss_pred HHcCCceEEEecCcccccCCCHHHHHHHHHHHhh
Confidence 4557788888777788899999999999876553
No 86
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.54 E-value=5e-13 Score=115.80 Aligned_cols=118 Identities=23% Similarity=0.313 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
+-+||||||+|+||+ .+|-|+|+.|+ ||++++++.+..+++++++++++++.......+.... .+
T Consensus 6 v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~~~---------~~ 70 (199)
T COG2068 6 VAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALLAQL---------GV 70 (199)
T ss_pred eEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhccC---------Ce
Confidence 569999999999999 79999999999 9999999999999999999999987332222222211 12
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce--eEeccHHHHHHHHHhc
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH--LYKMDYQRLIEAHRNN 141 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~--i~~~~l~~~~~~~~~~ 141 (429)
.++... +|..|.+.|+..+..+..... +.++++.||+ +...++..+++.++.+
T Consensus 71 ~~v~np------d~~~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 71 TVVVNP------DYAQGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred EEEeCc------chhhhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 344222 245799999999999887543 6999999999 5588899999988776
No 87
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=8.6e-13 Score=115.02 Aligned_cols=233 Identities=12% Similarity=0.145 Sum_probs=163.5
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
..+||+|.=.+|||. -|||-.|+|+ |||.|+.++..++|.++++|.+. .+++.+++.+ +|.+ +
T Consensus 4 ~~viIPAR~~STRLp------gKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVATD--de~I~~av~~----~G~~----a 66 (247)
T COG1212 4 FVVIIPARLASTRLP------GKPLADIGGK-PMIVRVAERALKSGADRVVVATD--DERIAEAVQA----FGGE----A 66 (247)
T ss_pred eEEEEecchhcccCC------CCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHH----hCCE----E
Confidence 468999999999998 7999999999 99999999999999999999884 5678888877 3332 1
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccCC-C--
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIRD-K-- 156 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~-~-- 156 (429)
++.. .+.+.|| +.+..+...+.-...+-++-+.||. +. ...+..+++..++.++++..+..+...+ +
T Consensus 67 -vmT~------~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~ 138 (247)
T COG1212 67 -VMTS------KDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAF 138 (247)
T ss_pred -EecC------CCCCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhc
Confidence 2211 1234688 6677776666433446788899999 55 5556888888888877776665554422 1
Q ss_pred CCCccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchh
Q 044626 157 HPGFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPA 236 (429)
Q Consensus 157 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~ 236 (429)
.++--.+..|.+|+.+.|+..+.... .+.. . ....+...|||.|++++|.++.+.. ++.-+. .+-|++
T Consensus 139 nPN~VKvV~d~~g~ALYFSRs~iP~~-----rd~~--~---~~p~l~HIGIYayr~~~L~~f~~~~-ps~LE~-~E~LEQ 206 (247)
T COG1212 139 NPNVVKVVLDKEGYALYFSRAPIPYG-----RDNF--G---GTPFLRHIGIYAYRAGFLERFVALK-PSPLEK-IESLEQ 206 (247)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCCCCc-----cccc--C---CcchhheeehHHhHHHHHHHHHhcC-CchhHH-HHHHHH
Confidence 13334566788899999988765321 1100 0 0245789999999999998776542 222111 233444
Q ss_pred c--ccCCceEEEEEecceE-EecCCHHHHHHHhHhhhc
Q 044626 237 A--ISIGMKVEAYLFDGYW-EDMRSIEAFYHANMECIK 271 (429)
Q Consensus 237 l--~~~g~~i~~~~~~~~~-~~i~t~~~~~~an~~~l~ 271 (429)
| +..|++|.+...+..- ..++|++|+.++.+.+..
T Consensus 207 LR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 207 LRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred HHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 4 4668999998887555 889999999998776653
No 88
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.51 E-value=2.2e-13 Score=120.81 Aligned_cols=121 Identities=21% Similarity=0.356 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
|.+||||||.|+||++ ||+|+|++|+ |||+|+++.+...++++|+|++++......+++.. ++ +
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~------~ 64 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG----LP------V 64 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC----CC------e
Confidence 4689999999999984 9999999999 99999999999988999999998876555554432 11 2
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCce
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADI 145 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ 145 (429)
.++.... +..|+.++++.+++.+.. ..+.+++++||+ +. ...+..+++.+...+..+
T Consensus 65 ~~~~~~~------~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 123 (186)
T cd04182 65 VVVINPD------WEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGAGI 123 (186)
T ss_pred EEEeCCC------hhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 2221111 136999999999988753 237899999999 44 556788888876544443
No 89
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.51 E-value=1.1e-12 Score=118.28 Aligned_cols=215 Identities=18% Similarity=0.133 Sum_probs=132.4
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhc-CCCeEEEEeecChh-HHHHHHhccccCcccCCCC
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINS-NINKIYALTQFNST-SLNLHLSRAFSGILRGKDG 79 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~-gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~~ 79 (429)
+.|||||||.|+||+ ...||.+++++|+ |+|.|+++.|.++ .+++|++++..... .+++.+.+ .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-~--------- 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK-K--------- 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-T---------
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-C---------
Confidence 469999999999998 5689999999999 9999999999885 48999999977653 34443433 1
Q ss_pred cEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eEecc-HHHHHHHHHhcCCceEEEEEeccCCCC
Q 044626 80 FVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LYKMD-YQRLIEAHRNNKADITIVALNAIRDKH 157 (429)
Q Consensus 80 ~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~~~~-l~~~~~~~~~~~~~~ti~~~~~~~~~~ 157 (429)
.+.++..-. .-.+|+++++..+.... +.+++..|=- +.+.. +.++++..++. ....+...+..
T Consensus 67 ~v~iv~GG~---------tR~~SV~ngL~~l~~~~-d~VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~p~~---- 131 (221)
T PF01128_consen 67 KVKIVEGGA---------TRQESVYNGLKALAEDC-DIVLIHDAARPFVSPELIDRVIEAAREG-HGAAIPALPVT---- 131 (221)
T ss_dssp TEEEEE--S---------SHHHHHHHHHHCHHCTS-SEEEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEEE-S----
T ss_pred CEEEecCCh---------hHHHHHHHHHHHHHcCC-CEEEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEEecc----
Confidence 133443221 23479999999887643 7888888877 55444 58888887652 23334444433
Q ss_pred CCccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchhc
Q 044626 158 PGFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPAA 237 (429)
Q Consensus 158 ~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~l 237 (429)
..+...+++|.+.....+.. -+.--.--.|+.+.|.+..+........+ +|--..+
T Consensus 132 --DTik~v~~~~~v~~tldR~~---------------------l~~~QTPQ~F~~~~l~~a~~~a~~~~~~~-tDdasl~ 187 (221)
T PF01128_consen 132 --DTIKRVDDDGFVTETLDRSK---------------------LWAVQTPQAFRFELLLEAYEKADEEGFEF-TDDASLV 187 (221)
T ss_dssp --SEEEEESTTSBEEEEETGGG---------------------EEEEEEEEEEEHHHHHHHHHTHHHHTHHH-SSHHHHH
T ss_pred --ccEEEEecCCcccccCCHHH---------------------eeeecCCCeecHHHHHHHHHHHHhcCCCc-cCHHHHH
Confidence 23445666777776655422 11222334788888776666531111122 3322222
Q ss_pred ccCCceEEEEEecceEEecCCHHHHHHHhHhh
Q 044626 238 ISIGMKVEAYLFDGYWEDMRSIEAFYHANMEC 269 (429)
Q Consensus 238 ~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~ 269 (429)
...|.++...+-+..-+.|.+|+|+..|...+
T Consensus 188 ~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 188 EAAGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp HHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred HHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 33378898888877888899999999887655
No 90
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.50 E-value=2.4e-13 Score=120.25 Aligned_cols=112 Identities=19% Similarity=0.383 Sum_probs=81.9
Q ss_pred CceecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEee----CcEEcCCcEECCCCEEe-----cCeEECCccccccccc
Q 044626 284 CPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIK----GTVIGMRTRIGDGAVIE-----DSVIMGADFYQQGEDI 353 (429)
Q Consensus 284 ~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~----~~~ig~~~~ig~~~~i~-----~~~~~~~~~~~~~~~~ 353 (429)
+.+++++.|+|.+.+. +++.||++|.|++ |.|. .++||++|.||++|+|. +++++++
T Consensus 9 p~i~~~~~I~~~a~I~----G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~--------- 75 (192)
T TIGR02287 9 PVVHPEAYVHPTAVLI----GDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN--------- 75 (192)
T ss_pred CcCCCCcEECCCCEEE----eeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC---------
Confidence 3445555555555553 4567777777777 6665 47889999999999984 3454444
Q ss_pred ccCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCCcc
Q 044626 354 QSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADGSI 428 (429)
Q Consensus 354 ~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~v 428 (429)
+.||+++.|.+|+||++|.||.++.+. .+.++|++++|+++ +.|.++..|++++.
T Consensus 76 -------------~~Ig~~a~I~~siIg~~~~IG~ga~I~------~g~~IG~~s~Vgag-s~V~~~~~ip~~~l 130 (192)
T TIGR02287 76 -------------GHVGHGAILHGCIVGRNALVGMNAVVM------DGAVIGENSIVAAS-AFVKAGAEMPAQYL 130 (192)
T ss_pred -------------CEECCCCEEcCCEECCCCEECCCcccC------CCeEECCCCEEcCC-CEECCCCEECCCeE
Confidence 789999999999999999999998886 34666777777777 67777777776654
No 91
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.49 E-value=2.8e-13 Score=114.93 Aligned_cols=111 Identities=29% Similarity=0.484 Sum_probs=67.9
Q ss_pred eecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEee----CcEEcCCcEECCCCEEecC----eEECCcccccccccccC
Q 044626 286 VYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIK----GTVIGMRTRIGDGAVIEDS----VIMGADFYQQGEDIQSS 356 (429)
Q Consensus 286 ~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~----~~~ig~~~~ig~~~~i~~~----~~~~~~~~~~~~~~~~~ 356 (429)
+.+.+.+.|.+.+- +++.||+++.|++ |.++ ...||+++.|.+||+|... +.++.
T Consensus 14 i~~~a~Va~~A~vi----GdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~------------ 77 (176)
T COG0663 14 IDPTAFVAPSATVI----GDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGD------------ 77 (176)
T ss_pred CCCceEECCCCEEE----EeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECC------------
Confidence 33334444444442 6677777777777 6664 4566666666666555432 22222
Q ss_pred CccccCCcceeEeCCCCeecceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCCcc
Q 044626 357 GKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADGSI 428 (429)
Q Consensus 357 ~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~v 428 (429)
.++||+++.|++|.|+++|.||.|++|. ++++||++|+|++| .+|.++..++++++
T Consensus 78 ---------~vtIGH~aivHGc~Ig~~~lIGmgA~vl------dga~IG~~~iVgAg-alV~~~k~~p~~~L 133 (176)
T COG0663 78 ---------DVTIGHGAVVHGCTIGDNVLIGMGATVL------DGAVIGDGSIVGAG-ALVTPGKEIPGGSL 133 (176)
T ss_pred ---------CcEEcCccEEEEeEECCCcEEecCceEe------CCcEECCCcEEccC-CcccCCcCCCCCeE
Confidence 1455555555555555555555555555 67888888999988 78888888888765
No 92
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.49 E-value=3.3e-13 Score=125.67 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=42.7
Q ss_pred eEeCCCCee-cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCCcc
Q 044626 367 VGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADGSI 428 (429)
Q Consensus 367 ~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~v 428 (429)
+.||+++.| .++.++++++||++|.|+++..+..+.+++++++|+++ +.|.+. |+++++
T Consensus 120 ~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~-s~V~~~--i~~~~~ 179 (254)
T TIGR01852 120 CVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGL-SAVSKD--VPPYGL 179 (254)
T ss_pred CEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeee-eeEeee--cCCCcE
Confidence 567777777 56777777888888888877778888888888888888 455543 555544
No 93
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.49 E-value=2.9e-13 Score=125.75 Aligned_cols=146 Identities=20% Similarity=0.148 Sum_probs=106.1
Q ss_pred cceeCCCCceecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEee-CcEEcCCcEECCCCEEecCeE-------------
Q 044626 277 YNFYDRDCPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIEDSVI------------- 341 (429)
Q Consensus 277 ~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~~~~------------- 341 (429)
..++.+++.|+++++|.|+++|. +++.||++|+|++ +.+. ++.||++|.|++|++|+.+.-
T Consensus 123 ~~vI~~~v~IG~~~~I~~~~vIg----~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~ 198 (338)
T COG1044 123 NVVIGAGVVIGENVVIGAGAVIG----ENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIP 198 (338)
T ss_pred CeEECCCCEECCCcEECCCCEEC----CCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcc
Confidence 34445555555555555555543 6899999999999 8885 699999999999999964322
Q ss_pred ------ECC-cccccccccccCC--ccccCCcceeEeCCCCee-cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEc
Q 044626 342 ------MGA-DFYQQGEDIQSSG--KCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIIS 411 (429)
Q Consensus 342 ------~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~ 411 (429)
+++ --++.|.-+.+.. -++.+.+ +.|++.++| +++.||++|.|..++-|.+...+++...+|..+-|.
T Consensus 199 q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~--~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~ 276 (338)
T COG1044 199 QIGRVIIGDDVEIGANTTIDRGALDDTVIGEG--VKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIA 276 (338)
T ss_pred eeceEEECCceEEcccceeccccccCceecCC--cEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeec
Confidence 221 1123333333332 1222222 667777778 899999999999999999999999999999999999
Q ss_pred cCEEEEcCCCEeCCCccC
Q 044626 412 EGIVVIIHGAEIADGSII 429 (429)
Q Consensus 412 ~~~~~i~~~~~i~~~~vv 429 (429)
++ ..|++++.|++.+-|
T Consensus 277 gh-~~IgD~~~I~~~~~v 293 (338)
T COG1044 277 GH-LEIGDGVTIGARSGV 293 (338)
T ss_pred Cc-eEEcCCCEEeccccc
Confidence 99 899999999988753
No 94
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.48 E-value=4.7e-13 Score=115.92 Aligned_cols=120 Identities=13% Similarity=0.126 Sum_probs=72.9
Q ss_pred ecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEee----CcEEcCCcEECCCCEEecCeEECCcccccccccccCCcccc
Q 044626 287 YTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIK----GTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCIN 361 (429)
Q Consensus 287 ~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~----~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (429)
++++.++|.+.+. +++.||++|.|++ +.+. .++||++|.|+++|.|.++..+.... + .. .
T Consensus 3 ~~~~~I~~~a~i~----g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~-~-------~~---v 67 (164)
T cd04646 3 APGAVVCQESEIR----GDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAE-P-------KP---M 67 (164)
T ss_pred CCCcEECCCCEEc----CceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCC-C-------CC---e
Confidence 3444455555543 4677888888888 7774 47999999999999998875532100 0 00 0
Q ss_pred CCcceeEeCCCCeecceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCCcc
Q 044626 362 HKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADGSI 428 (429)
Q Consensus 362 ~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~v 428 (429)
..+..+.|+.++.+.+++||++|.||.+|.|.. +.++|++++|+++ ++|.++..++++++
T Consensus 68 ~IG~~~~i~~~~~i~~~~IGd~~~Ig~~a~I~~------gv~Ig~~~~Igag-svV~~~~~i~~~~v 127 (164)
T cd04646 68 IIGSNNVFEVGCKCEALKIGNNNVFESKSFVGK------NVIITDGCIIGAG-CKLPSSEILPENTV 127 (164)
T ss_pred EECCCCEECCCcEEEeeEECCCCEEeCCCEECC------CCEECCCCEEeCC-eEECCCcEECCCeE
Confidence 000014455566666777777887777777764 4555566666666 55555555555543
No 95
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.48 E-value=5.6e-13 Score=114.60 Aligned_cols=96 Identities=25% Similarity=0.449 Sum_probs=71.7
Q ss_pred eCeEECCCcEEcc-eEeeC----cEEcCCcEECCCCEEe-----cCeEECCcccccccccccCCccccCCcceeEeCCCC
Q 044626 304 RDSVVGDGCIINR-CKIKG----TVIGMRTRIGDGAVIE-----DSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDT 373 (429)
Q Consensus 304 ~~~~ig~~~~i~~-~~v~~----~~ig~~~~ig~~~~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~ 373 (429)
.++.||++|+|++ +.+.. ++||++|.|+++|.|. ++++..+ +.|++++
T Consensus 17 g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~----------------------~~Ig~~~ 74 (155)
T cd04745 17 GDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN----------------------GHIGHGA 74 (155)
T ss_pred ccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC----------------------CEECCCc
Confidence 4677888888887 77753 8899999999999993 3454443 7899999
Q ss_pred eecceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCCcc
Q 044626 374 QIKKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADGSI 428 (429)
Q Consensus 374 ~i~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~v 428 (429)
.+.+++||++|.||.++.|.+ +..++++++|+++ +.|..+..|+++++
T Consensus 75 ~i~~~~Ig~~~~Ig~~~~I~~------g~~Ig~~~~Ig~~-s~v~~~~~i~~~~~ 122 (155)
T cd04745 75 ILHGCTIGRNALVGMNAVVMD------GAVIGEESIVGAM-AFVKAGTVIPPRSL 122 (155)
T ss_pred EEECCEECCCCEECCCCEEeC------CCEECCCCEECCC-CEeCCCCEeCCCCE
Confidence 999999999999999999974 4555666666666 56666666665554
No 96
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.47 E-value=9.5e-13 Score=118.82 Aligned_cols=146 Identities=29% Similarity=0.363 Sum_probs=80.7
Q ss_pred ceeCCCCceecCCccCCCeEE-eeeEe-eCeEECCCcEEcc-eEee-CcEEcCCcEECCCCEEec---------------
Q 044626 278 NFYDRDCPVYTMPRCLPPTMI-REAVI-RDSVVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIED--------------- 338 (429)
Q Consensus 278 ~~~~~~~~~~~~~~i~~~~~i-~~~~i-~~~~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~--------------- 338 (429)
..+++.+.+++++.|++++.+ +++.+ .++.||++|.|++ +.+. +++||++|.|+++++|..
T Consensus 8 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~ 87 (205)
T cd03352 8 VSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKI 87 (205)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEc
Confidence 344555555555555555555 34444 6788888888888 5553 366666666666555532
Q ss_pred ----CeEECC-cccccccccccCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEcc
Q 044626 339 ----SVIMGA-DFYQQGEDIQSSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISE 412 (429)
Q Consensus 339 ----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~ 412 (429)
.++++. .+++.+....+.. ...+.||+++.+ .++.|+++++||+++.+.++..+.++.++|++++|+.
T Consensus 88 ~~~~~v~Ig~~~~Ig~~~~i~~~~------~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~ 161 (205)
T cd03352 88 PQLGGVIIGDDVEIGANTTIDRGA------LGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGG 161 (205)
T ss_pred CCcceEEECCCEEECCCCEEeccc------cCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcC
Confidence 111211 1111111111000 011456666666 4566777777777777776666666666666666665
Q ss_pred CE-----EEEcCCCEeCCCccC
Q 044626 413 GI-----VVIIHGAEIADGSII 429 (429)
Q Consensus 413 ~~-----~~i~~~~~i~~~~vv 429 (429)
++ ++|++++.|+++++|
T Consensus 162 ~~~v~~~~~ig~~~~i~~~s~v 183 (205)
T cd03352 162 QVGIAGHLTIGDGVVIGAGSGV 183 (205)
T ss_pred CCEEeCCcEECCCCEEcCCCEE
Confidence 52 566777777777653
No 97
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.46 E-value=6.1e-13 Score=111.99 Aligned_cols=110 Identities=18% Similarity=0.256 Sum_probs=89.1
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
|.+||||||+|+||. ..-|||++++|+ |||+|+++.+.+ .+++|++.++.+...+++|+.+. + +
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~----g------v 64 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV----G------V 64 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc----C------c
Confidence 789999999999998 257999999999 999999999988 78999999999999999999872 2 2
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeE-ec-cHHHHHHHHH
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLY-KM-DYQRLIEAHR 139 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~-~~-~l~~~~~~~~ 139 (429)
+++. ... .|--.-+..+++.+. .++|++++|+.+ +. .+..+++.+.
T Consensus 65 ~vi~--tpG------~GYv~Dl~~al~~l~----~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 65 KVIE--TPG------EGYVEDLRFALESLG----TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred eEEE--cCC------CChHHHHHHHHHhcC----CceEEEecccccCCHHHHHHHHHHHh
Confidence 3432 111 367777888888886 799999999944 44 4577777765
No 98
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.45 E-value=2.5e-12 Score=114.97 Aligned_cols=113 Identities=18% Similarity=0.189 Sum_probs=81.6
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
+|.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+. .++++|+|+++.+.+.+. . .+.
T Consensus 3 ~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~~----~----~~~----- 63 (193)
T PRK00317 3 PITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARYA----A----FGL----- 63 (193)
T ss_pred CceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHHH----h----cCC-----
Confidence 5889999999999995 269999999999 99999999998 679999998876533221 1 111
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhc
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNN 141 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~ 141 (429)
.++.... . ...|+..+++.+++..+ .+.+++++||+ +. ...+..+++.+.+.
T Consensus 64 -~~v~~~~-~----~~~g~~~~i~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 117 (193)
T PRK00317 64 -PVIPDSL-A----DFPGPLAGILAGLKQAR---TEWVLVVPCDTPFIPPDLVARLAQAAGKD 117 (193)
T ss_pred -cEEeCCC-C----CCCCCHHHHHHHHHhcC---CCeEEEEcCCcCCCCHHHHHHHHHhhhcC
Confidence 1221110 0 12588899998887654 38899999999 55 44567788765433
No 99
>PLN02296 carbonate dehydratase
Probab=99.44 E-value=7.6e-13 Score=122.72 Aligned_cols=115 Identities=20% Similarity=0.386 Sum_probs=78.4
Q ss_pred CCCceecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEee----CcEEcCCcEECCCCEEec----------CeEECCcc
Q 044626 282 RDCPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIK----GTVIGMRTRIGDGAVIED----------SVIMGADF 346 (429)
Q Consensus 282 ~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~----~~~ig~~~~ig~~~~i~~----------~~~~~~~~ 346 (429)
..+.+++++.|.|.+.+. +++.||++|.|++ |.|. +++||++|.|+++|+|.. .++++++
T Consensus 51 ~~p~I~~~~~I~p~A~V~----G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~- 125 (269)
T PLN02296 51 KAPVVDKDAFVAPSASVI----GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDN- 125 (269)
T ss_pred CCCccCCCCEECCCcEEE----cceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCC-
Confidence 344455555666666553 3566777777766 6554 358999999999998863 2233321
Q ss_pred cccccccccCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCC
Q 044626 347 YQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADG 426 (429)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~ 426 (429)
+.||++|.+.+++||++|.||.+++|. .+.+++++++|+++ ++|.+++.|+++
T Consensus 126 --------------------v~IG~~avI~g~~Igd~v~IG~ga~I~------~gv~Ig~~a~Igag-SvV~~~~~I~~~ 178 (269)
T PLN02296 126 --------------------VTIGHSAVLHGCTVEDEAFVGMGATLL------DGVVVEKHAMVAAG-ALVRQNTRIPSG 178 (269)
T ss_pred --------------------CEECCCceecCCEECCCcEECCCcEEC------CCeEECCCCEECCC-CEEecCCEeCCC
Confidence 778888888888888888888888887 45666677777777 667777666666
Q ss_pred cc
Q 044626 427 SI 428 (429)
Q Consensus 427 ~v 428 (429)
++
T Consensus 179 ~~ 180 (269)
T PLN02296 179 EV 180 (269)
T ss_pred eE
Confidence 64
No 100
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.44 E-value=1.2e-12 Score=116.95 Aligned_cols=66 Identities=27% Similarity=0.441 Sum_probs=54.5
Q ss_pred CCcceeCCCCceecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECC
Q 044626 275 MRYNFYDRDCPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGA 344 (429)
Q Consensus 275 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~ 344 (429)
|+..++++.+.+++++.|+|++.+. +++.||++|.|++ +.+.++.||++|+|++++.|.++++.++
T Consensus 7 ~~~~~~~~~v~ig~~~~I~~~a~i~----~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~ 73 (193)
T cd03353 7 PETTYIDGDVEIGVDVVIDPGVILE----GKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNG 73 (193)
T ss_pred CCeEEEcCCeEECCCcEECCCCEEe----CcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCC
Confidence 4455667777788888888877775 5789999999999 9999999999999999999988776655
No 101
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.42 E-value=1.4e-11 Score=110.54 Aligned_cols=217 Identities=18% Similarity=0.138 Sum_probs=139.4
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcC-CCeEEEEeecChh-HHHHHHhccccCcccCCCC
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSN-INKIYALTQFNST-SLNLHLSRAFSGILRGKDG 79 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~g-i~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~~ 79 (429)
+.+||||||.|+||+ ...||.+++++|+ ||++|+++.|..+. |++|+|+++.... .+.++... . .+ .
T Consensus 5 ~~~vilAaG~G~R~~---~~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~--~-~~----~ 73 (230)
T COG1211 5 VSAVILAAGFGSRMG---NPVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKL--S-AD----K 73 (230)
T ss_pred EEEEEEcCccccccC---CCCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhh--c-cC----C
Confidence 569999999999999 4799999999999 99999999998876 8999999987433 34333321 1 01 1
Q ss_pred cEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccCCCC
Q 044626 80 FVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIRDKH 157 (429)
Q Consensus 80 ~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~ 157 (429)
.++++..- ..-.++++.+++.+..+..+-+|+..+-- +. ...+.++++.... ....+.+.++.
T Consensus 74 ~v~~v~GG---------~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~--~~aai~alpv~---- 138 (230)
T COG1211 74 RVEVVKGG---------ATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADK--YGAAILALPVT---- 138 (230)
T ss_pred eEEEecCC---------ccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhcc--CCcEEEEeecc----
Confidence 23333211 13458999999988854458888888877 55 4445777744333 33344444443
Q ss_pred CCccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccc--cch
Q 044626 158 PGFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSE--VIP 235 (429)
Q Consensus 158 ~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d--~l~ 235 (429)
......+.++.+.....+...- .-----.|+.+.|.+.++.......++-.| ++.
T Consensus 139 --DTik~~~~~~~i~~t~~R~~l~---------------------~~QTPQ~F~~~~L~~a~~~a~~~~~~~tDdas~~e 195 (230)
T COG1211 139 --DTLKRVDADGNIVETVDRSGLW---------------------AAQTPQAFRLELLKQALARAFAEGREITDDASAIE 195 (230)
T ss_pred --CcEEEecCCCCeeeccChhhhh---------------------hhhCCccccHHHHHHHHHHHHhcCCCcCCHHHHHH
Confidence 2344455566777665543211 000112677777776666543223233222 333
Q ss_pred hcccCCceEEEEEecceEEecCCHHHHHHHhHhhh
Q 044626 236 AAISIGMKVEAYLFDGYWEDMRSIEAFYHANMECI 270 (429)
Q Consensus 236 ~l~~~g~~i~~~~~~~~~~~i~t~~~~~~an~~~l 270 (429)
+ .|.++..+.-+.+-+.+.+|+|+..|+..+-
T Consensus 196 ~---~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~ 227 (230)
T COG1211 196 K---AGGPVSLVEGSADNFKITTPEDLEIAEAILR 227 (230)
T ss_pred H---cCCCeEEEecCcceeEecCHHHHHHHHHHhc
Confidence 3 2778888887778899999999998876553
No 102
>PLN02472 uncharacterized protein
Probab=99.42 E-value=2.3e-12 Score=117.96 Aligned_cols=113 Identities=19% Similarity=0.348 Sum_probs=82.1
Q ss_pred CceecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEee----CcEEcCCcEECCCCEEec----------CeEECCcccc
Q 044626 284 CPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIK----GTVIGMRTRIGDGAVIED----------SVIMGADFYQ 348 (429)
Q Consensus 284 ~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~----~~~ig~~~~ig~~~~i~~----------~~~~~~~~~~ 348 (429)
..++.++.+.|++.+. +++.||++|.|+. +.+. ..+||++|.|+++|+|.. .+++++.
T Consensus 60 p~i~~~~~I~p~a~i~----G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~--- 132 (246)
T PLN02472 60 PKVAVDAYVAPNVVLA----GQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRY--- 132 (246)
T ss_pred CccCCCCEECCCCEEe----cCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCC---
Confidence 3455555556666554 4567777777777 6664 378999999999999853 2334432
Q ss_pred cccccccCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCCcc
Q 044626 349 QGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADGSI 428 (429)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~v 428 (429)
|.||++|.+.+|+|+++|.||.+|+|. .++.+|++++|+++ ++|.++..|++|++
T Consensus 133 ------------------v~IG~~s~L~~~~Igd~v~IG~~svI~------~gavIg~~~~Ig~g-svV~~g~~Ip~g~~ 187 (246)
T PLN02472 133 ------------------VTIGAYSLLRSCTIEPECIIGQHSILM------EGSLVETHSILEAG-SVLPPGRRIPTGEL 187 (246)
T ss_pred ------------------CEECCCcEECCeEEcCCCEECCCCEEC------CCCEECCCCEECCC-CEECCCCEeCCCCE
Confidence 789999999999999999999999887 45667777777777 67777777777764
No 103
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.42 E-value=1.7e-12 Score=115.17 Aligned_cols=97 Identities=22% Similarity=0.427 Sum_probs=69.0
Q ss_pred eCeEECCCcEEcc-eEeeC----cEEcCCcEECCCCEEecCe----EECCcccccccccccCCccccCCcceeEeCCCCe
Q 044626 304 RDSVVGDGCIINR-CKIKG----TVIGMRTRIGDGAVIEDSV----IMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQ 374 (429)
Q Consensus 304 ~~~~ig~~~~i~~-~~v~~----~~ig~~~~ig~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~ 374 (429)
+++.||++|.|++ |.|.. ++|+++|.||++|+|.... ++++. +.||+++.
T Consensus 27 g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~---------------------~~Ig~~a~ 85 (196)
T PRK13627 27 GDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGEN---------------------GHIGHGAI 85 (196)
T ss_pred CceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCC---------------------CEECCCcE
Confidence 4567777777777 66643 5788888888888886532 22221 78888888
Q ss_pred ecceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCCcc
Q 044626 375 IKKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADGSI 428 (429)
Q Consensus 375 i~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~v 428 (429)
+.+++||++|.||.++++. .+.++|+++++++| ++|.++..++++++
T Consensus 86 i~g~vIG~~v~IG~ga~V~------~g~~IG~~s~Vgag-s~V~~~~~ip~~~~ 132 (196)
T PRK13627 86 LHGCVIGRDALVGMNSVIM------DGAVIGEESIVAAM-SFVKAGFQGEKRQL 132 (196)
T ss_pred EeeEEECCCCEECcCCccC------CCcEECCCCEEcCC-CEEeCCcCcCCCcE
Confidence 8899999999999988887 44556777777777 56666666666553
No 104
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.41 E-value=5.9e-12 Score=113.03 Aligned_cols=112 Identities=16% Similarity=0.188 Sum_probs=81.2
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
++.+||||||.|+||+ .+|+|+|++|+ |||+|+++.|... +++|+|++++ .+.+...+...
T Consensus 7 ~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~-~~~~~~~~~~~----------- 67 (200)
T PRK02726 7 NLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPW-PERYQSLLPPG----------- 67 (200)
T ss_pred CceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCC-HHHHHhhccCC-----------
Confidence 3679999999999997 48999999999 9999999999754 7899888763 22222222110
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHh
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRN 140 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~ 140 (429)
+.++.... +..|..++++.+++.++. +.++++.||+ +. ...+..+++.+..
T Consensus 68 ~~~i~~~~------~~~G~~~si~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 68 CHWLREPP------PSQGPLVAFAQGLPQIKT---EWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CeEecCCC------CCCChHHHHHHHHHhCCC---CcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 22221111 236999999999988763 7899999999 55 4456778876543
No 105
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.40 E-value=2.3e-12 Score=120.03 Aligned_cols=141 Identities=17% Similarity=0.175 Sum_probs=90.4
Q ss_pred CCCCceecCCccCCCeEE-eeeEe-eCeEECCCcEEcc-eEee-------------CcEEcCCcEECCCCEEecCeEECC
Q 044626 281 DRDCPVYTMPRCLPPTMI-REAVI-RDSVVGDGCIINR-CKIK-------------GTVIGMRTRIGDGAVIEDSVIMGA 344 (429)
Q Consensus 281 ~~~~~~~~~~~i~~~~~i-~~~~i-~~~~ig~~~~i~~-~~v~-------------~~~ig~~~~ig~~~~i~~~~~~~~ 344 (429)
++.+.+.+++.|++++.| +++.| .++.||++|.|++ +.+. +++||++|.|+++|.|.+++..+.
T Consensus 21 ~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~ 100 (254)
T cd03351 21 GPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGG 100 (254)
T ss_pred CCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCC
Confidence 333333333444444444 34444 4688888888888 7774 588999999999999886543321
Q ss_pred --cccccccccccCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCC
Q 044626 345 --DFYQQGEDIQSSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGA 421 (429)
Q Consensus 345 --~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 421 (429)
..++++.....-. .+.+ .+.||+++.| .++.++++|+||++|.|+++..+..+.++|++++|+++ +.|.++
T Consensus 101 ~~~~IG~~~~I~~~~-~I~~---~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~-s~V~~~- 174 (254)
T cd03351 101 GVTRIGNNNLLMAYV-HVAH---DCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGG-SGVVQD- 174 (254)
T ss_pred CceEECCCCEECCCC-EECC---CCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcC-CEEeee-
Confidence 1122222221111 0111 1567777777 66778888899999999988888899999999999999 565554
Q ss_pred EeCCCcc
Q 044626 422 EIADGSI 428 (429)
Q Consensus 422 ~i~~~~v 428 (429)
|+++++
T Consensus 175 -i~~~~~ 180 (254)
T cd03351 175 -VPPYVI 180 (254)
T ss_pred -cCCCeE
Confidence 454443
No 106
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.40 E-value=2.7e-12 Score=118.75 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=32.3
Q ss_pred eEeCCCCee-cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccC
Q 044626 367 VGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEG 413 (429)
Q Consensus 367 ~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~ 413 (429)
|.||+++.| .++.++.+|+||+++.|+.+..+....++|++++|+++
T Consensus 120 ~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~g 167 (255)
T PRK12461 120 CQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGG 167 (255)
T ss_pred CEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCC
Confidence 566666666 45666666777777777766666677777777777777
No 107
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.38 E-value=4.7e-12 Score=101.04 Aligned_cols=98 Identities=39% Similarity=0.640 Sum_probs=80.5
Q ss_pred eeeEeeCeEECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecce
Q 044626 299 REAVIRDSVVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKA 378 (429)
Q Consensus 299 ~~~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~ 378 (429)
+++.+.++.||++|.|+.+.+++|+|+++|.|++++.|.+++++++ +.||+++.+.+|
T Consensus 6 ~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~----------------------~~Ig~~~~i~~s 63 (104)
T cd04651 6 RRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN----------------------VGIGRNAVIRRA 63 (104)
T ss_pred CCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC----------------------CEECCCCEEEeE
Confidence 4566678999999999878889999999999999999999999887 899999999999
Q ss_pred EEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCE
Q 044626 379 VIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAE 422 (429)
Q Consensus 379 ~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~ 422 (429)
+||++|.|++++.+.+.... .--.+.+..++++.|++++.
T Consensus 64 iig~~~~Ig~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~ 103 (104)
T cd04651 64 IIDKNVVIPDGVVIGGDPEE----DRARFYVTEDGIVVVGKGMV 103 (104)
T ss_pred EECCCCEECCCCEECCCccc----ccccceEcCCeEEEEecccC
Confidence 99999999999999754211 11255666677677766553
No 108
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.38 E-value=9.3e-11 Score=106.85 Aligned_cols=212 Identities=11% Similarity=0.120 Sum_probs=135.2
Q ss_pred EEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcC-CCeEEEEeecChhHHHHHHhccccCcccCCCCcEE
Q 044626 4 AVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSN-INKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVE 82 (429)
Q Consensus 4 avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~ 82 (429)
|||||+|.++||. .|.++|++|+ |||+|+++.+.+++ +++|+|.+. .+++.+...+ ++.+ +.
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~~----~g~~----v~ 64 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAKS----YGAS----VP 64 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHHH----cCCE----eE
Confidence 7999999999996 6999999999 99999999999887 677766553 3456555543 2211 11
Q ss_pred EE-eccccccccCcccCcHHHHHHHHHHhhc-CCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEEEEEeccCCCCC
Q 044626 83 VI-AAYQSLEDQDWFQGNADAIRRCLWVLEE-YPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITIVALNAIRDKHP 158 (429)
Q Consensus 83 i~-~~~~~~~~~~~~~Gt~~al~~~~~~i~~-~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~ 158 (429)
+. +.+-. ....|+.++++++++.++. ...+.++++.||. +. ..++..+++.+.+.+++..+.+.+.. .+.
T Consensus 65 ~~r~~~l~----~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~--~~~ 138 (222)
T TIGR03584 65 FLRPKELA----DDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFA--FPI 138 (222)
T ss_pred EeChHHHc----CCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccC--CCh
Confidence 11 11110 1125888999999988753 1247899999999 55 66789999998886677666555432 122
Q ss_pred CccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchhcc
Q 044626 159 GFGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPAAI 238 (429)
Q Consensus 159 ~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~l~ 238 (429)
.+.. ..+++|++..+....... ..+.. ...+..+..+|+++++.|.+ . . .+ +
T Consensus 139 ~~~~-~~~~~g~~~~~~~~~~~~----------~rQd~-~~~y~~nga~y~~~~~~~~~---~----~-~~----~---- 190 (222)
T TIGR03584 139 QRAF-KLKENGGVEMFFPEHFNT----------RSQDL-EEAYHDAGQFYWGKSQAWLE---S----G-PI----F---- 190 (222)
T ss_pred HHhe-EECCCCcEEecCCCcccC----------CCCCC-chheeeCCeEEEEEHHHHHh---c----C-Cc----c----
Confidence 2222 334566665544221100 00110 12345688899999987742 1 1 11 1
Q ss_pred cCCceEEEEEecc-eEEecCCHHHHHHHhHh
Q 044626 239 SIGMKVEAYLFDG-YWEDMRSIEAFYHANME 268 (429)
Q Consensus 239 ~~g~~i~~~~~~~-~~~~i~t~~~~~~an~~ 268 (429)
+.++..|..+. ..+||++++|+..|...
T Consensus 191 --~~~~~~~~m~~~~~iDID~~~D~~~ae~l 219 (222)
T TIGR03584 191 --SPHSIPIVLPRHLVQDIDTLEDWERAELL 219 (222)
T ss_pred --CCCcEEEEeCccceeCCCCHHHHHHHHHH
Confidence 23556666544 68999999999988654
No 109
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.38 E-value=5.8e-12 Score=109.32 Aligned_cols=108 Identities=25% Similarity=0.339 Sum_probs=74.6
Q ss_pred ceeCCCCceecCCc------cCCCeEE-eeeEee-CeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccc
Q 044626 278 NFYDRDCPVYTMPR------CLPPTMI-REAVIR-DSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQ 348 (429)
Q Consensus 278 ~~~~~~~~~~~~~~------i~~~~~i-~~~~i~-~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~ 348 (429)
.++++++.+.+++. |++++.| +++.+. ++.||++|.|++ +.+.+++|++++.|++++.+.++++.++
T Consensus 18 v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~---- 93 (163)
T cd05636 18 VWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGEN---- 93 (163)
T ss_pred eEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCC----
Confidence 34555555544444 4445555 455554 689999999999 9999999999999999999988887766
Q ss_pred cccccccCCccccCCcceeEeCCCCeec-------------------------ceEEecCcEECCCcEEecCCCCCCCee
Q 044626 349 QGEDIQSSGKCINHKAIPVGIGEDTQIK-------------------------KAVIDKNARIGKNVLIINKDGVQEGDR 403 (429)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~ig~~~~i~-------------------------~~~ig~~~~ig~~~~i~~~~~~~~~~~ 403 (429)
+.|++++.+. +++||++|.||.++.|. .+.+
T Consensus 94 ------------------~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~------~g~~ 149 (163)
T cd05636 94 ------------------VNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLN------PGVK 149 (163)
T ss_pred ------------------CEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEEC------CCcE
Confidence 6677776663 46777777777777776 3344
Q ss_pred ecCCeEEccC
Q 044626 404 EANGYIISEG 413 (429)
Q Consensus 404 ~~~~~~i~~~ 413 (429)
++++++|++|
T Consensus 150 ig~~~~i~ag 159 (163)
T cd05636 150 IGPGSWVYPG 159 (163)
T ss_pred ECCCCEECCC
Confidence 4444444444
No 110
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.37 E-value=8.9e-12 Score=106.81 Aligned_cols=96 Identities=25% Similarity=0.401 Sum_probs=65.1
Q ss_pred eCeEECCCcEEcc-eEeeC----cEEcCCcEECCCCEEecC----eEECCcccccccccccCCccccCCcceeEeCCCCe
Q 044626 304 RDSVVGDGCIINR-CKIKG----TVIGMRTRIGDGAVIEDS----VIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQ 374 (429)
Q Consensus 304 ~~~~ig~~~~i~~-~~v~~----~~ig~~~~ig~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~ 374 (429)
+++.||++|.|++ +.|.. ++||++|.|+++|.|... ++++++ +.|++++.
T Consensus 17 ~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~---------------------~~I~~~~~ 75 (154)
T cd04650 17 GDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY---------------------VTIGHNAV 75 (154)
T ss_pred eeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC---------------------CEECCCcE
Confidence 4566777777777 66653 589999999999988763 444432 78888888
Q ss_pred ecceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCCc
Q 044626 375 IKKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADGS 427 (429)
Q Consensus 375 i~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~ 427 (429)
+.+++||++|.|++++.+.++.. ++++++++++ +.+.++..+++++
T Consensus 76 i~~~~Ig~~~~Ig~~~~i~~~~~------Ig~~~~vg~~-~~v~~g~~i~~~~ 121 (154)
T cd04650 76 VHGAKVGNYVIVGMGAILLNGAK------IGDHVIIGAG-AVVTPGKEIPDYS 121 (154)
T ss_pred EECcEECCCCEEcCCCEEeCCCE------ECCCCEECCC-CEECCCcEeCCCC
Confidence 88889999999999988875444 4444444444 3444444444433
No 111
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.37 E-value=7.4e-12 Score=111.57 Aligned_cols=123 Identities=16% Similarity=0.226 Sum_probs=87.5
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHH---HHHHhccccCcccCCC
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSL---NLHLSRAFSGILRGKD 78 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i---~~~l~~~~~~~~~~~~ 78 (429)
+.+||||||.|+||+ .+|.|++++|+ |||+|+++.+...++++++|++++..+.+ .+..... .
T Consensus 1 ~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~---~----- 66 (190)
T TIGR03202 1 IVAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLLAD---E----- 66 (190)
T ss_pred CeEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhhcC---C-----
Confidence 468999999999998 48999999999 99999999888889999999998764322 1111110 0
Q ss_pred CcEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCce
Q 044626 79 GFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADI 145 (429)
Q Consensus 79 ~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ 145 (429)
.+.++.... |..|.+++++.+++.+.....+.++++.||+ +. ...+..+++.+......+
T Consensus 67 -~~~~~~~~~------~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~ 128 (190)
T TIGR03202 67 -RIMLVCCRD------ACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDDY 128 (190)
T ss_pred -CeEEEECCC------hhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCE
Confidence 122322211 2358899999999877432347899999999 55 444678888765544443
No 112
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.37 E-value=5.5e-12 Score=117.72 Aligned_cols=11 Identities=18% Similarity=-0.209 Sum_probs=4.4
Q ss_pred EEcCCCEeCCC
Q 044626 416 VIIHGAEIADG 426 (429)
Q Consensus 416 ~i~~~~~i~~~ 426 (429)
+|++++.|+++
T Consensus 143 ~Igd~~~Ig~~ 153 (262)
T PRK05289 143 EVGDYAIIGGL 153 (262)
T ss_pred ccCCcEEEeec
Confidence 34444444333
No 113
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.37 E-value=4.5e-12 Score=112.01 Aligned_cols=113 Identities=17% Similarity=0.203 Sum_probs=84.5
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
|.|||||||.|+||+ .||+|+|++|+ |||+|+++.+... +++|+|++++.... ... .+ +
T Consensus 1 ~~~iILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~----~~~----~~------~ 59 (181)
T cd02503 1 ITGVILAGGKSRRMG-----GDKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER----YAL----LG------V 59 (181)
T ss_pred CcEEEECCCccccCC-----CCceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH----Hhh----cC------C
Confidence 579999999999998 39999999999 9999999999887 89999999876543 111 11 1
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCce
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADI 145 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ 145 (429)
.++.... +..|+.++++.+++.++ .+.++++.||+ +. ...+..+++.+ ..+..+
T Consensus 60 ~~v~~~~------~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~ 115 (181)
T cd02503 60 PVIPDEP------PGKGPLAGILAALRAAP---ADWVLVLACDMPFLPPELLERLLAAA-EEGADA 115 (181)
T ss_pred cEeeCCC------CCCCCHHHHHHHHHhcC---CCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCE
Confidence 1322111 23699999999998775 38999999999 44 55567787766 333343
No 114
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.36 E-value=3.1e-12 Score=129.62 Aligned_cols=106 Identities=20% Similarity=0.352 Sum_probs=51.4
Q ss_pred eEeeCeEECCCcEEcc-eEee-CcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCee-cc
Q 044626 301 AVIRDSVVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQI-KK 377 (429)
Q Consensus 301 ~~i~~~~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~ 377 (429)
+.+.++.||++|.|++ +.+. +++||++|.||+++.+.++.+..+..+.+..... .+.||+++.| .+
T Consensus 309 ~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~~~i~-----------~~~Ig~~~~ig~~ 377 (451)
T TIGR01173 309 SVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHLSYLG-----------DAEIGSNVNIGAG 377 (451)
T ss_pred cEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCCcEecceeeEe-----------eeEEcCCcEECCC
Confidence 4445566666666666 6664 4666666666666666544443322111111000 1445555554 23
Q ss_pred eEEec-------CcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEc
Q 044626 378 AVIDK-------NARIGKNVLIINKDGVQEGDREANGYIISEGIVVII 418 (429)
Q Consensus 378 ~~ig~-------~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~ 418 (429)
++++. .+.||+++.|+.++.+..+.++|++++|++| ++|.
T Consensus 378 ~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g-~~v~ 424 (451)
T TIGR01173 378 TITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAG-STVT 424 (451)
T ss_pred eEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccC-CEEC
Confidence 33221 2344444444433333355666666666666 3443
No 115
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.35 E-value=1.2e-11 Score=106.04 Aligned_cols=109 Identities=28% Similarity=0.472 Sum_probs=76.3
Q ss_pred ecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEeeC----cEEcCCcEECCCCEEecC----eEECCcccccccccccCC
Q 044626 287 YTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIKG----TVIGMRTRIGDGAVIEDS----VIMGADFYQQGEDIQSSG 357 (429)
Q Consensus 287 ~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~~----~~ig~~~~ig~~~~i~~~----~~~~~~~~~~~~~~~~~~ 357 (429)
++++.++|.+.+. +++.||++|.|++ +.|.. ++||++|.|+++|+|.++ ++++++
T Consensus 3 ~~~~~i~~~a~i~----g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~------------ 66 (153)
T cd04645 3 DPSAFIAPNATVI----GDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN------------ 66 (153)
T ss_pred cCCeEECCCCEEE----EeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC------------
Confidence 3444455555553 4567788888887 76653 689999999999999875 344432
Q ss_pred ccccCCcceeEeCCCCeecceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCCc
Q 044626 358 KCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADGS 427 (429)
Q Consensus 358 ~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~ 427 (429)
+.|+.++.+.+++||++|.|++++.+.. +.++++++.|+.+ +.|.++..+++++
T Consensus 67 ---------~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~------~~~ig~~~~ig~~-~~v~~~~~i~~~~ 120 (153)
T cd04645 67 ---------VTVGHGAVLHGCTIGDNCLIGMGAIILD------GAVIGKGSIVAAG-SLVPPGKVIPPGS 120 (153)
T ss_pred ---------cEECCCcEEeeeEECCCCEECCCCEEcC------CCEECCCCEECCC-CEECCCCEeCCCC
Confidence 7899999998899999999999988873 3445566666666 4555555555544
No 116
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=2.9e-12 Score=121.72 Aligned_cols=127 Identities=21% Similarity=0.259 Sum_probs=93.0
Q ss_pred eeCCCC-ceecCCccCCCeEE-eeeEe-eCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccc
Q 044626 279 FYDRDC-PVYTMPRCLPPTMI-REAVI-RDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQ 354 (429)
Q Consensus 279 ~~~~~~-~~~~~~~i~~~~~i-~~~~i-~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~ 354 (429)
+++|.. .+...+.|++.++| +++.+ +++.||++|+|++ +.+++|.|++++.|.++++|++|.+..+
T Consensus 257 l~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~---------- 326 (460)
T COG1207 257 LIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG---------- 326 (460)
T ss_pred EeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC----------
Confidence 334433 35566677777777 66776 5888999999999 8888999999999988888888888766
Q ss_pred cCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEecCCCCC-----------CCeeecCCeEEccCE--------
Q 044626 355 SSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQ-----------EGDREANGYIISEGI-------- 414 (429)
Q Consensus 355 ~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~-----------~~~~~~~~~~i~~~~-------- 414 (429)
+.||+.+++ .+|.+++++.||..+.+.+. .++ +++++|+++.||+|+
T Consensus 327 ------------~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a-~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~ 393 (460)
T COG1207 327 ------------ATVGPFARLRPGAVLGADVHIGNFVEVKKA-TIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGK 393 (460)
T ss_pred ------------cccCCccccCCcCcccCCCeEeeeEEEecc-cccCCccccceeeeccceecCCceeccceEEEcCCCc
Confidence 677777777 57777777777777766543 222 446677777777775
Q ss_pred ----EEEcCCCEeCCCcc
Q 044626 415 ----VVIIHGAEIADGSI 428 (429)
Q Consensus 415 ----~~i~~~~~i~~~~v 428 (429)
+.||++++||++|.
T Consensus 394 nK~~T~IGd~vFiGSns~ 411 (460)
T COG1207 394 NKFKTIIGDNVFIGSNSQ 411 (460)
T ss_pred ccceeeecCCcEEccCCc
Confidence 67788888877764
No 117
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.33 E-value=1.5e-11 Score=106.48 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=62.4
Q ss_pred CcceeCCCCceecCCccCCCeEE-eeeEe----eCeEECCCcEEcc-eEeeCcEE-----cCCcEECCCCEEecCeEECC
Q 044626 276 RYNFYDRDCPVYTMPRCLPPTMI-REAVI----RDSVVGDGCIINR-CKIKGTVI-----GMRTRIGDGAVIEDSVIMGA 344 (429)
Q Consensus 276 ~~~~~~~~~~~~~~~~i~~~~~i-~~~~i----~~~~ig~~~~i~~-~~v~~~~i-----g~~~~ig~~~~i~~~~~~~~ 344 (429)
+.+++++.+.+..+..+++++.| +++.+ ..+.||++|.|++ +.+.++.. +.++.||+++.+..+..+.+
T Consensus 4 ~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~ 83 (164)
T cd04646 4 PGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEA 83 (164)
T ss_pred CCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEe
Confidence 34556666666666666666666 55655 3478999999999 77765432 33445555554444443333
Q ss_pred cccccccccccCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEcc
Q 044626 345 DFYQQGEDIQSSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISE 412 (429)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~ 412 (429)
+.||++|+| .+++|+++++||++|.|+.+..+..+.++++++++++
T Consensus 84 ----------------------~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g 130 (164)
T cd04646 84 ----------------------LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYG 130 (164)
T ss_pred ----------------------eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeC
Confidence 445555554 3455555555555555542222223333444444433
No 118
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.33 E-value=2.2e-11 Score=105.99 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=13.8
Q ss_pred eEeCCCCeecc-eEEecCcEECCCcEEe
Q 044626 367 VGIGEDTQIKK-AVIDKNARIGKNVLII 393 (429)
Q Consensus 367 ~~ig~~~~i~~-~~ig~~~~ig~~~~i~ 393 (429)
+.|+.++.|.+ +.||++|.||.+|.|.
T Consensus 71 ~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~ 98 (167)
T cd00710 71 VSIAHGAIVHGPAYIGDNCFIGFRSVVF 98 (167)
T ss_pred ceECCCCEEeCCEEECCCCEECCCCEEE
Confidence 44445555532 5555555555555553
No 119
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.33 E-value=7.1e-12 Score=112.22 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=39.6
Q ss_pred cceeCCCCceecCCccCCCeEE-eeeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEec
Q 044626 277 YNFYDRDCPVYTMPRCLPPTMI-REAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIED 338 (429)
Q Consensus 277 ~~~~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~ 338 (429)
...+++++.+. ++.|++++.| .++.+.++.||++|+|+. +.+.++.||++|.|++++.|.+
T Consensus 8 ~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 8 EPTLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred CCeECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 34566666663 3566666666 456666777777777777 6666666777777776666654
No 120
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.31 E-value=1.7e-11 Score=112.00 Aligned_cols=106 Identities=13% Similarity=0.185 Sum_probs=55.4
Q ss_pred CCCCceecCCccCCCeEEeeeEe-eCeEECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCcc
Q 044626 281 DRDCPVYTMPRCLPPTMIREAVI-RDSVVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKC 359 (429)
Q Consensus 281 ~~~~~~~~~~~i~~~~~i~~~~i-~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 359 (429)
.|.+.+..++.|++++++....+ .++.||++|.|+. +++||.+|+||++|.|..++.+++.. + ..
T Consensus 104 ~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~----~a~IG~~v~IG~nv~I~~g~~IgG~~-e---p~------ 169 (269)
T TIGR00965 104 VPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDT----WATVGSCAQIGKNVHLSGGVGIGGVL-E---PL------ 169 (269)
T ss_pred CCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECC----CcEECCCCEECCCCEEcCCcccCCCc-c---cC------
Confidence 44444444555555555521122 2466777777777 67777777777777777766654300 0 00
Q ss_pred ccCCcceeEeCCCCee-cceEEecCcEECCCcEEecCCCCCCCee
Q 044626 360 INHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGDR 403 (429)
Q Consensus 360 ~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~~ 403 (429)
...++.||++|.| .+|.|.++++||++|+|+.+..+..+.+
T Consensus 170 ---~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~ 211 (269)
T TIGR00965 170 ---QANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTK 211 (269)
T ss_pred ---CCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCE
Confidence 0011556666555 4555555555555555554333333333
No 121
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.30 E-value=2.9e-11 Score=101.98 Aligned_cols=108 Identities=16% Similarity=0.203 Sum_probs=54.6
Q ss_pred cceeCCCCceecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEe-eCcEEcCCcEECCCCEEecCeEECCcccccccccc
Q 044626 277 YNFYDRDCPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKI-KGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQ 354 (429)
Q Consensus 277 ~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~ 354 (429)
..++++++.+++++.+.+++.+. .++.||++|.|+. +.+ .+++||++|.|++++.|.+..-..
T Consensus 7 ~~~i~~~~~Ig~~~~I~~~~~i~----~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~----------- 71 (139)
T cd03350 7 GAIIRDGAFIGPGAVLMMPSYVN----IGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPL----------- 71 (139)
T ss_pred CcEECCCCEECCCCEECCCCEEc----cCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCccccc-----------
Confidence 34455555555555555555442 3556777777776 333 144444444444444443321000
Q ss_pred cCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEecCCCCCCCeeecCC
Q 044626 355 SSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGDREANG 407 (429)
Q Consensus 355 ~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~ 407 (429)
...++.||++++| .+++|.++++||+++.|+.+..+....+++++
T Consensus 72 --------~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~ 117 (139)
T cd03350 72 --------QATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR 117 (139)
T ss_pred --------ccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc
Confidence 0011566666666 56666666666666666644444444555444
No 122
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.29 E-value=2.4e-11 Score=118.21 Aligned_cols=45 Identities=18% Similarity=0.011 Sum_probs=22.2
Q ss_pred cEECCCcEEecCCCCCCCeeecCCeEEccCE-----EEEcCCCEeCCCcc
Q 044626 384 ARIGKNVLIINKDGVQEGDREANGYIISEGI-----VVIIHGAEIADGSI 428 (429)
Q Consensus 384 ~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~-----~~i~~~~~i~~~~v 428 (429)
++||+++.|.+...++.+.++|++++|++++ +.||+++.|+.++.
T Consensus 226 t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~ 275 (343)
T PRK00892 226 TVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVG 275 (343)
T ss_pred ceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCE
Confidence 3444444444444444445555555554431 56666666665554
No 123
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.29 E-value=1.3e-11 Score=113.81 Aligned_cols=60 Identities=15% Similarity=0.252 Sum_probs=31.7
Q ss_pred CCCCceecCCccCCCeEEeeeEe-eCeEECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEECC
Q 044626 281 DRDCPVYTMPRCLPPTMIREAVI-RDSVVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGA 344 (429)
Q Consensus 281 ~~~~~~~~~~~i~~~~~i~~~~i-~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~ 344 (429)
.+.+.+..++.|++++.+....+ -++.||++|.|+. ++.||++|.||++|.|.+++.+++
T Consensus 107 ~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~----~a~IG~~a~IG~nv~I~~gv~I~g 167 (272)
T PRK11830 107 VPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDT----WATVGSCAQIGKNVHLSGGVGIGG 167 (272)
T ss_pred cCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEcc----ccEECCCCEECCCcEECCCccCCC
Confidence 33444444444444444421222 2345555555555 566666666666666666665554
No 124
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.29 E-value=1.9e-11 Score=108.44 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=83.8
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
+.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++|+|++++..+. +.... ++ +
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~~---~~------~ 62 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQAG---FG------L 62 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhcc---CC------C
Confidence 468999999999997 259999999999 999999999976 589998888654322 11111 11 1
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eEecc-HHHHHHHHHhcCCce
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LYKMD-YQRLIEAHRNNKADI 145 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~~~~-l~~~~~~~~~~~~~~ 145 (429)
.++.... ++..|+.++++.+++.++ .+.+++++||. +.+.+ +..+++.+...++.+
T Consensus 63 ~~i~~~~-----~~~~g~~~si~~al~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 120 (186)
T TIGR02665 63 PVVPDAL-----ADFPGPLAGILAGLRWAG---TDWVLTVPCDTPFLPEDLVARLAAALEASDADI 120 (186)
T ss_pred cEEecCC-----CCCCCCHHHHHHHHHhcC---CCeEEEEecCCCcCCHHHHHHHHHHhhccCCcE
Confidence 1222111 123699999999998775 37899999999 55444 577877765434433
No 125
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.29 E-value=2.5e-11 Score=122.93 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=62.2
Q ss_pred eeCCCCceecCCccCCCeEE-eeeEeeCeEECCCcE----------------Ecc-eEee-CcEEcCCcEECCCCEEecC
Q 044626 279 FYDRDCPVYTMPRCLPPTMI-REAVIRDSVVGDGCI----------------INR-CKIK-GTVIGMRTRIGDGAVIEDS 339 (429)
Q Consensus 279 ~~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~----------------i~~-~~v~-~~~ig~~~~ig~~~~i~~~ 339 (429)
.+.+.+.+..++.|++++.| .++.+.++.||++|. |++ +.+. +++||++|+||+++.+.++
T Consensus 263 ~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~ 342 (448)
T PRK14357 263 IIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKS 342 (448)
T ss_pred EEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeecc
Confidence 34444444445555555555 445555555555554 444 4443 3555555555555555554
Q ss_pred eEECCcccccccccccCCccccCCcceeEeCCCCee-cceEEe-------cCcEECCCcEEecCCCCCCCeeecCCeEEc
Q 044626 340 VIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQI-KKAVID-------KNARIGKNVLIINKDGVQEGDREANGYIIS 411 (429)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig-------~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~ 411 (429)
.+..+. ...... ..+ .+.||++|.| .++++. +.++||+++.|+.+..+..+.++|++++|+
T Consensus 343 ~ig~~~------~~~~~~---~~~--~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ 411 (448)
T PRK14357 343 TIGENT------KAQHLT---YLG--DATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIG 411 (448)
T ss_pred EEcCCc------Cccccc---ccc--CcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEc
Confidence 443331 111110 000 1455666555 222221 234444444444444444666777777777
Q ss_pred cCEEEEcC
Q 044626 412 EGIVVIIH 419 (429)
Q Consensus 412 ~~~~~i~~ 419 (429)
++ ++|.+
T Consensus 412 ag-~~v~~ 418 (448)
T PRK14357 412 AG-SVITE 418 (448)
T ss_pred CC-CEECC
Confidence 77 45544
No 126
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.28 E-value=2.2e-11 Score=123.53 Aligned_cols=87 Identities=20% Similarity=0.330 Sum_probs=63.4
Q ss_pred CceecCCccCCCeEE-eeeEe-eCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccc
Q 044626 284 CPVYTMPRCLPPTMI-REAVI-RDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCI 360 (429)
Q Consensus 284 ~~~~~~~~i~~~~~i-~~~~i-~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 360 (429)
..+++++.+++++.+ .++.+ +++.||++|.|++ +.|++++||++|+|+++|.|.++++.++
T Consensus 264 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~---------------- 327 (456)
T PRK14356 264 VRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDG---------------- 327 (456)
T ss_pred EEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecc----------------
Confidence 345566677777777 34444 5789999999999 9999999999999999999988887776
Q ss_pred cCCcceeEeCCCCeec-ceEEecCcEECCCcEE
Q 044626 361 NHKAIPVGIGEDTQIK-KAVIDKNARIGKNVLI 392 (429)
Q Consensus 361 ~~~~~~~~ig~~~~i~-~~~ig~~~~ig~~~~i 392 (429)
+.||+++.|. +++||++|+||.++.+
T Consensus 328 ------~~Ig~~~~i~~~~~ig~~~~ig~~~~i 354 (456)
T PRK14356 328 ------CSVGPYARLRPGAVLEEGARVGNFVEM 354 (456)
T ss_pred ------cEECCceEECCCCEECCCCEecCCcee
Confidence 5555555553 5555555555555433
No 127
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.28 E-value=3.5e-11 Score=91.40 Aligned_cols=63 Identities=30% Similarity=0.525 Sum_probs=41.2
Q ss_pred ECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEE
Q 044626 308 VGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARI 386 (429)
Q Consensus 308 ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~i 386 (429)
||++++|++ +.+.++.|+++|.|++++.|++++++.+ +.|++++.+.++++++++.|
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~----------------------~~ig~~~~l~~svi~~~~~i 59 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN----------------------VTIEDGCTLENCIIGNGAVI 59 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC----------------------CEECCCCEEeccEEeCCCEE
Confidence 455555555 5555666666666666666666665554 56666766666666666666
Q ss_pred CCCcEE
Q 044626 387 GKNVLI 392 (429)
Q Consensus 387 g~~~~i 392 (429)
++++.+
T Consensus 60 ~~~~~v 65 (81)
T cd04652 60 GEKCKL 65 (81)
T ss_pred CCCCEE
Confidence 666666
No 128
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.27 E-value=3.6e-11 Score=115.34 Aligned_cols=171 Identities=19% Similarity=0.187 Sum_probs=78.1
Q ss_pred EEecCCHHHHHHHhHhhhcccC------CCcceeCCCCceecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEe-eCcEE
Q 044626 253 WEDMRSIEAFYHANMECIKRSN------MRYNFYDRDCPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKI-KGTVI 324 (429)
Q Consensus 253 ~~~i~t~~~~~~an~~~l~~~~------~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v-~~~~i 324 (429)
+.-+++|...+..-..++.+.. .+.+++++++.+++++.|+|.+++. .++.||++|.|++ +.+ .+++|
T Consensus 67 ~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~----~~v~IG~~~~I~~~~~Ig~~~~I 142 (324)
T TIGR01853 67 ALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIG----AGVEIGENVIIGPGVVIGDDVVI 142 (324)
T ss_pred EEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEc----cCcEECCcEEECCCCEECCccee
Confidence 5567788766655455553321 2233444444444444444444441 2333444443333 333 13333
Q ss_pred c------------CCcEECCCCEEecCeEECCcccccccc-cccCCccccCCcceeEeCCCCee-cceEEe----cCcEE
Q 044626 325 G------------MRTRIGDGAVIEDSVIMGADFYQQGED-IQSSGKCINHKAIPVGIGEDTQI-KKAVID----KNARI 386 (429)
Q Consensus 325 g------------~~~~ig~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig----~~~~i 386 (429)
| .+|+||++|.|..+++++.+.++.... ..++.++++.+. +.||+++.| .+++|. ++++|
T Consensus 143 G~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~--vvIgd~v~IGa~~~I~r~~~~~t~I 220 (324)
T TIGR01853 143 GDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGR--VIIEDDVEIGANTTIDRGAFDDTII 220 (324)
T ss_pred CCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccce--EEECCCcEECCCCEEecCCcCccee
Confidence 3 444444444444444444332222111 122333333221 444444444 233332 33555
Q ss_pred CCCcEEecCCCCCCCeeecCCeEEccCE-----EEEcCCCEeCCCccC
Q 044626 387 GKNVLIINKDGVQEGDREANGYIISEGI-----VVIIHGAEIADGSII 429 (429)
Q Consensus 387 g~~~~i~~~~~~~~~~~~~~~~~i~~~~-----~~i~~~~~i~~~~vv 429 (429)
|+++.|.+...++.+.++|++++|.+++ ++||+++.++.++.|
T Consensus 221 g~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I 268 (324)
T TIGR01853 221 GEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGV 268 (324)
T ss_pred cCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEcccccc
Confidence 5555555555555556666666665441 667777666666543
No 129
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.27 E-value=1e-10 Score=101.87 Aligned_cols=97 Identities=21% Similarity=0.268 Sum_probs=67.5
Q ss_pred CcceeCCCCceecCCccCCCeEE-eeeEee-----CeEECCCcEEcc-eEee-----CcEEcCCcEECCCCEEecCeEEC
Q 044626 276 RYNFYDRDCPVYTMPRCLPPTMI-REAVIR-----DSVVGDGCIINR-CKIK-----GTVIGMRTRIGDGAVIEDSVIMG 343 (429)
Q Consensus 276 ~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~-----~~~ig~~~~i~~-~~v~-----~~~ig~~~~ig~~~~i~~~~~~~ 343 (429)
+.+++++++.+..+.+++++++| +++.+. ++.||++|.|++ +.+. ++.||++|.|++++.|.++++++
T Consensus 7 ~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig 86 (167)
T cd00710 7 PSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIG 86 (167)
T ss_pred CCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEEC
Confidence 34556666666655566666666 455542 367888888887 7763 47778888888888777766666
Q ss_pred CcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEe
Q 044626 344 ADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLII 393 (429)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~ 393 (429)
++ +.||.++.|.++.||++|.||.++.|.
T Consensus 87 ~~---------------------~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~ 115 (167)
T cd00710 87 DN---------------------CFIGFRSVVFNAKVGDNCVIGHNAVVD 115 (167)
T ss_pred CC---------------------CEECCCCEEECCEECCCCEEcCCCEEe
Confidence 53 778888888778888888888887773
No 130
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.26 E-value=3.5e-10 Score=104.17 Aligned_cols=115 Identities=21% Similarity=0.253 Sum_probs=79.3
Q ss_pred EEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcC-CCeEEEEeecCh--hHHHHHHhccccCcccCCCCc
Q 044626 4 AVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSN-INKIYALTQFNS--TSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 4 avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~g-i~~I~Iv~~~~~--~~i~~~l~~~~~~~~~~~~~~ 80 (429)
|||||+|.|+||. +|+|+|++|+ |||+|+++.+..++ +++++|+++... +.+.+++.. .+
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~----~~------ 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK----LG------ 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH----cC------
Confidence 7999999999995 5999999999 99999999999987 899999998764 456565543 11
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceE
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADIT 146 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~t 146 (429)
+.++.... .+ .+......+.....+.++++.||+ +. ...++.+++.++..+.+.+
T Consensus 65 v~~v~~~~--------~~---~l~~~~~~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 VKVFRGSE--------ED---VLGRYYQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred CeEEECCc--------hh---HHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 12321110 01 222222222211237899999999 55 5567899998876665554
No 131
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.26 E-value=3.3e-11 Score=122.17 Aligned_cols=115 Identities=20% Similarity=0.264 Sum_probs=73.5
Q ss_pred cCCCeEE-eeeEe-eCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeE
Q 044626 292 CLPPTMI-REAVI-RDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVG 368 (429)
Q Consensus 292 i~~~~~i-~~~~i-~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (429)
+++++.| +++.| +++.||++|.|++ |.|++|+||++|.|++++.|+++++..+ +.
T Consensus 268 ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~----------------------~~ 325 (456)
T PRK09451 268 HGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAA----------------------CT 325 (456)
T ss_pred ECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCC----------------------cE
Confidence 3444444 34444 4788999999999 8888999999999999999987766555 55
Q ss_pred eCCCCeec-ceEEecCcEECCCcEEecC-----C-----CCCCCeeecCCeEEccCE------------EEEcCCCEeCC
Q 044626 369 IGEDTQIK-KAVIDKNARIGKNVLIINK-----D-----GVQEGDREANGYIISEGI------------VVIIHGAEIAD 425 (429)
Q Consensus 369 ig~~~~i~-~~~ig~~~~ig~~~~i~~~-----~-----~~~~~~~~~~~~~i~~~~------------~~i~~~~~i~~ 425 (429)
||+++.|. ++.++++|.||+++.|.+. . ...+++.+|+++.||+++ ++||+++.|+.
T Consensus 326 Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~ 405 (456)
T PRK09451 326 IGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGS 405 (456)
T ss_pred ecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECC
Confidence 56555552 5555555555554433211 0 111345566666666652 35777777777
Q ss_pred Ccc
Q 044626 426 GSI 428 (429)
Q Consensus 426 ~~v 428 (429)
+++
T Consensus 406 ~~~ 408 (456)
T PRK09451 406 DTQ 408 (456)
T ss_pred CCE
Confidence 765
No 132
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.25 E-value=1.9e-10 Score=102.84 Aligned_cols=102 Identities=15% Similarity=0.287 Sum_probs=71.6
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCC-cchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCC
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAA-NYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDG 79 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g-~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 79 (429)
++.+||||||.|+||+ .+|+|+|++| + |||+|+++.+... +++|+|++++ ..+ .. .
T Consensus 8 ~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~~----~~-----~----- 64 (196)
T PRK00560 8 NIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KKF----EF-----N----- 64 (196)
T ss_pred CceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hhc----cc-----C-----
Confidence 4679999999999997 6999999999 9 9999999999876 8999988875 111 11 1
Q ss_pred cEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eEeccH-HHH
Q 044626 80 FVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LYKMDY-QRL 134 (429)
Q Consensus 80 ~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~~~~l-~~~ 134 (429)
+.++..... . ..|+...+..++...+ .+.++++.||+ +.+.++ +.+
T Consensus 65 -~~~v~d~~~--~---~~gpl~gi~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 65 -APFLLEKES--D---LFSPLFGIINAFLTLQ---TPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred -CcEEecCCC--C---CCCcHHHHHHHHHhcC---CCeEEEEecCcCcCCHHHHHHH
Confidence 112221111 1 2466666666654444 38999999999 445554 554
No 133
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.25 E-value=1.2e-10 Score=100.13 Aligned_cols=96 Identities=22% Similarity=0.316 Sum_probs=68.3
Q ss_pred CcceeCCCCceecCCccCCCeEE-eeeEee----CeEECCCcEEcc-eEe-----eCcEEcCCcEECCCCEEecCeEECC
Q 044626 276 RYNFYDRDCPVYTMPRCLPPTMI-REAVIR----DSVVGDGCIINR-CKI-----KGTVIGMRTRIGDGAVIEDSVIMGA 344 (429)
Q Consensus 276 ~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~i~~-~~v-----~~~~ig~~~~ig~~~~i~~~~~~~~ 344 (429)
+.+++++++.+..++.|++++.| .++.+. .+.||++|.|++ |.| .+++|+++|.|++++.+.++.+.++
T Consensus 5 ~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~ 84 (155)
T cd04745 5 PSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRN 84 (155)
T ss_pred CCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCC
Confidence 44566777776666777777777 566654 478999999998 877 4688888888888887776555444
Q ss_pred cccccccccccCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEe
Q 044626 345 DFYQQGEDIQSSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLII 393 (429)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~ 393 (429)
+.||.++.| .++.|+++|.|++++.+.
T Consensus 85 ----------------------~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~ 112 (155)
T cd04745 85 ----------------------ALVGMNAVVMDGAVIGEESIVGAMAFVK 112 (155)
T ss_pred ----------------------CEECCCCEEeCCCEECCCCEECCCCEeC
Confidence 677777776 446677777777666665
No 134
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.25 E-value=4e-11 Score=122.34 Aligned_cols=59 Identities=8% Similarity=0.092 Sum_probs=35.9
Q ss_pred ceecCCccCCCeEE-eeeEe-eCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECC
Q 044626 285 PVYTMPRCLPPTMI-REAVI-RDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGA 344 (429)
Q Consensus 285 ~~~~~~~i~~~~~i-~~~~i-~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~ 344 (429)
.+.+.++|++++.| +++.| +++.||++|.|++ +.|.+++||++|.|+. +.+.++++..+
T Consensus 267 ~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~ 328 (482)
T PRK14352 267 WIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAG 328 (482)
T ss_pred EEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCC
Confidence 34455556666666 45555 4677777777777 7777777777776653 44444444443
No 135
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.25 E-value=5.1e-11 Score=90.52 Aligned_cols=76 Identities=28% Similarity=0.459 Sum_probs=66.1
Q ss_pred CCCeEE-eeeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeC
Q 044626 293 LPPTMI-REAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIG 370 (429)
Q Consensus 293 ~~~~~i-~~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 370 (429)
++++.| +++.+.++.||++|.|++ +.+++++|++++.|++++.|.+++++++ +.|+
T Consensus 3 g~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~----------------------~~i~ 60 (81)
T cd04652 3 GENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG----------------------AVIG 60 (81)
T ss_pred cCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC----------------------CEEC
Confidence 344444 345556789999999999 9999999999999999999999999887 8999
Q ss_pred CCCeecceEEecCcEECCCc
Q 044626 371 EDTQIKKAVIDKNARIGKNV 390 (429)
Q Consensus 371 ~~~~i~~~~ig~~~~ig~~~ 390 (429)
+++++.+|+||+++.|++++
T Consensus 61 ~~~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 61 EKCKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred CCCEEccCEECCCcEeCCCC
Confidence 99999999999999999875
No 136
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.25 E-value=9.8e-11 Score=105.67 Aligned_cols=149 Identities=23% Similarity=0.217 Sum_probs=84.7
Q ss_pred eCCCCceecCCccCCCeEE-eeeEe-eCeEECCCcEEcc-eEee-CcEEcCCcEECCCCEEecCeEECCccccccccccc
Q 044626 280 YDRDCPVYTMPRCLPPTMI-REAVI-RDSVVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQS 355 (429)
Q Consensus 280 ~~~~~~~~~~~~i~~~~~i-~~~~i-~~~~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~ 355 (429)
+++++.+++.+.+++++.+ .++.| .++.|++++.|+. +.+. +++|+++++||+++.|.++++++...+.......+
T Consensus 4 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ 83 (205)
T cd03352 4 IGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGG 83 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCc
Confidence 5677777777777777777 45555 3466666666666 5553 56666666666666666665555321111100000
Q ss_pred CCcc----ccCCcceeEeCCCCeec-----ceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCC
Q 044626 356 SGKC----INHKAIPVGIGEDTQIK-----KAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADG 426 (429)
Q Consensus 356 ~~~~----~~~~~~~~~ig~~~~i~-----~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~ 426 (429)
..+. ....+..+.|++++.+. .+.||+++.+++++.|.+...++++..++.++.+..+ +.|++++.|+++
T Consensus 84 ~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~-~~Ig~~~~ig~~ 162 (205)
T cd03352 84 WVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGS-TTIGDNVIIGGQ 162 (205)
T ss_pred EEEcCCcceEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccc-cEECCCeEEcCC
Confidence 0000 00111224566665553 4567777777777777666666666666666666566 677777777777
Q ss_pred ccC
Q 044626 427 SII 429 (429)
Q Consensus 427 ~vv 429 (429)
++|
T Consensus 163 ~~v 165 (205)
T cd03352 163 VGI 165 (205)
T ss_pred CEE
Confidence 653
No 137
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.24 E-value=6.6e-11 Score=89.44 Aligned_cols=64 Identities=41% Similarity=0.718 Sum_probs=51.2
Q ss_pred ECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEE
Q 044626 308 VGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARI 386 (429)
Q Consensus 308 ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~i 386 (429)
||++|.|++ +.+.+++||++|+|++++.|++++++++ +.|++++.+.+++|++++.|
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~----------------------~~i~~~~~i~~svv~~~~~i 59 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN----------------------VTIGANSVIVDSIIGDNAVI 59 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC----------------------CEECCCCEEECCEECCCCEE
Confidence 566777766 6666788888888888888888887776 78888888888888888888
Q ss_pred CCCcEEe
Q 044626 387 GKNVLII 393 (429)
Q Consensus 387 g~~~~i~ 393 (429)
++++.+.
T Consensus 60 ~~~~~i~ 66 (79)
T cd03356 60 GENVRVV 66 (79)
T ss_pred CCCCEEc
Confidence 8888775
No 138
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.24 E-value=8.2e-11 Score=101.75 Aligned_cols=109 Identities=22% Similarity=0.219 Sum_probs=63.6
Q ss_pred CeEECCCcEEcc-eEee----CcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceE
Q 044626 305 DSVVGDGCIINR-CKIK----GTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAV 379 (429)
Q Consensus 305 ~~~ig~~~~i~~-~~v~----~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ 379 (429)
+..||+++.|++ +.+. +++||++|.|+++|+|.++..+.... ...... ..+..+.|++++.+.++.
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~----~~~~~v-----~Ig~~~~Ig~~~~i~~~~ 91 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKG----VAFFPL-----HIGDYVFIGENCVVNAAQ 91 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCC----ccccCe-----EECCccEECCCCEEEeeE
Confidence 456666666666 6554 36899999999999998765333210 000000 011126788888888888
Q ss_pred EecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEe
Q 044626 380 IDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEI 423 (429)
Q Consensus 380 ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i 423 (429)
||+++.||+++.|+.+..++.+..++.++++.++ +.|++++++
T Consensus 92 Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~-~~i~~~~vv 134 (161)
T cd03359 92 IGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPD-TVIPPYSVV 134 (161)
T ss_pred EcCCcEECCCCEEcCCCEECCCcEECCCCEECCC-CEeCCCCEE
Confidence 8888888888888754444433444444444444 333433333
No 139
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.24 E-value=6.4e-11 Score=106.05 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=27.9
Q ss_pred eeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeE
Q 044626 300 EAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVI 341 (429)
Q Consensus 300 ~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~ 341 (429)
++.+.++.||+++.|++ |.+.+++||++|.|++++.+.++.+
T Consensus 14 ~a~i~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~I 56 (204)
T TIGR03308 14 TAELTESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTI 56 (204)
T ss_pred CcEEeccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEE
Confidence 33344567777777777 7777777777777777777665443
No 140
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.24 E-value=1.3e-10 Score=102.88 Aligned_cols=97 Identities=16% Similarity=0.271 Sum_probs=73.3
Q ss_pred CCcceeCCCCceecCCccCCCeEE-eeeEee----CeEECCCcEEcc-eEe-----eCcEEcCCcEECCCCEEecCeEEC
Q 044626 275 MRYNFYDRDCPVYTMPRCLPPTMI-REAVIR----DSVVGDGCIINR-CKI-----KGTVIGMRTRIGDGAVIEDSVIMG 343 (429)
Q Consensus 275 ~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~i~~-~~v-----~~~~ig~~~~ig~~~~i~~~~~~~ 343 (429)
.+.+++++++.+...+.|++++.| .+|.|. .+.||++|.|++ |.| .+|+|+++|.|++++.|.++++..
T Consensus 12 ~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~ 91 (192)
T TIGR02287 12 HPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGR 91 (192)
T ss_pred CCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECC
Confidence 345667777776666667777777 566663 467888888888 777 468899999999999888877766
Q ss_pred CcccccccccccCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEe
Q 044626 344 ADFYQQGEDIQSSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLII 393 (429)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~ 393 (429)
+ +.||.++.+ .++.||++|.|++++.+.
T Consensus 92 ~----------------------~~IG~ga~I~~g~~IG~~s~Vgags~V~ 120 (192)
T TIGR02287 92 N----------------------ALVGMNAVVMDGAVIGENSIVAASAFVK 120 (192)
T ss_pred C----------------------CEECCCcccCCCeEECCCCEEcCCCEEC
Confidence 5 788888887 568888888888888776
No 141
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.23 E-value=7.7e-11 Score=103.71 Aligned_cols=127 Identities=23% Similarity=0.279 Sum_probs=69.1
Q ss_pred ceecCCccCCCeEEeeeEeeCeEECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEECCcc----------cccccccc
Q 044626 285 PVYTMPRCLPPTMIREAVIRDSVVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGADF----------YQQGEDIQ 354 (429)
Q Consensus 285 ~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~----------~~~~~~~~ 354 (429)
.|++.+.|+|.+.+. +++.||+.|+|++ +++||++|+|+++++|++.+.++.+. ..++.+++
T Consensus 5 ~IHPTAiIe~gA~ig----~~V~IGpf~iIg~----~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKyk 76 (260)
T COG1043 5 KIHPTAIIEPGAEIG----EDVKIGPFCIIGP----NVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYK 76 (260)
T ss_pred ccCcceeeCCCCCcC----CCCEECceEEECC----CcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccC
Confidence 344444444444443 4666666666666 66666666666666666555554411 12233333
Q ss_pred cCCccccCCcceeEeCCCCee-cceEEe-------cCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCC
Q 044626 355 SSGKCINHKAIPVGIGEDTQI-KKAVID-------KNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADG 426 (429)
Q Consensus 355 ~~~~~~~~~~~~~~ig~~~~i-~~~~ig-------~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~ 426 (429)
.-. + .+.||+++.| +.++|- .-+.||+++.+.-+..++.++++|++|++..+ +.++.|+.|++.
T Consensus 77 ge~------T-~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNn-atLAGHV~igD~ 148 (260)
T COG1043 77 GEP------T-RLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANN-ATLAGHVEVGDY 148 (260)
T ss_pred CCc------e-EEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecC-CeEeccEEECCE
Confidence 322 1 1556777666 333322 23456666666666666677777777777766 444444444443
Q ss_pred c
Q 044626 427 S 427 (429)
Q Consensus 427 ~ 427 (429)
+
T Consensus 149 a 149 (260)
T COG1043 149 A 149 (260)
T ss_pred E
Confidence 3
No 142
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.23 E-value=1.1e-10 Score=106.70 Aligned_cols=100 Identities=19% Similarity=0.307 Sum_probs=61.9
Q ss_pred CCccCCCeEEeeeEeeCeEECCCcEEcceEe-eCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCccee
Q 044626 289 MPRCLPPTMIREAVIRDSVVGDGCIINRCKI-KGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPV 367 (429)
Q Consensus 289 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~v-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (429)
++++.|++.+. .++.||++++|.+..+ .++.||++|.|+.++.|++++.++.. |
T Consensus 100 ~~rv~p~a~i~----~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~n---------------------v 154 (269)
T TIGR00965 100 GFRVVPGAAVR----QGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN---------------------V 154 (269)
T ss_pred CEEECCCcEEC----CCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCC---------------------C
Confidence 44555655553 4566777777765222 25667777777777777666666642 5
Q ss_pred EeCCCCee---------cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccC
Q 044626 368 GIGEDTQI---------KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEG 413 (429)
Q Consensus 368 ~ig~~~~i---------~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~ 413 (429)
.|+.++.| ..++||++|.||++|.|.++..+++++.+|.+++|+.+
T Consensus 155 ~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~ 209 (269)
T TIGR00965 155 HLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQS 209 (269)
T ss_pred EEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCC
Confidence 66666655 34678888888888888755555555555555555554
No 143
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.23 E-value=2.4e-10 Score=102.58 Aligned_cols=52 Identities=31% Similarity=0.476 Sum_probs=27.0
Q ss_pred eEeCCCCee-cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCCc
Q 044626 367 VGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADGS 427 (429)
Q Consensus 367 ~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~ 427 (429)
+.|+.++.+ .++.|+++|.||+++.+. .+..++++++++++ ++|.+. +++++
T Consensus 142 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~------~~~~i~~~~~i~~~-~~v~~~--~~~~~ 194 (201)
T TIGR03570 142 VHIAPGVTLSGGVVIGEGVFIGAGATII------QGVTIGAGAIVGAG-AVVTKD--IPDGG 194 (201)
T ss_pred CEECCCCEEeCCcEECCCCEECCCCEEe------CCCEECCCCEECCC-CEECCc--CCCCC
Confidence 445555555 245555555555555554 34555566666666 344332 45544
No 144
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.22 E-value=9.4e-11 Score=118.61 Aligned_cols=129 Identities=16% Similarity=0.228 Sum_probs=75.9
Q ss_pred eeCCCCceecCCccCCCeEE-eeeEeeCeEECCCcEEcc-eEee-CcEEcCCcEECCCCEEecCeEECCccccccccccc
Q 044626 279 FYDRDCPVYTMPRCLPPTMI-REAVIRDSVVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQS 355 (429)
Q Consensus 279 ~~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~ 355 (429)
.+++.+.+++++.|++++.| .++.+.++.||++|.|++ +.+. +|+||++|.||+++.+.++.+..+..++.......
T Consensus 276 ~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~ 355 (446)
T PRK14353 276 VIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGD 355 (446)
T ss_pred EECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcC
Confidence 44444555555555555555 345666799999999999 8886 89999999999999887665554322221111111
Q ss_pred CCccccCCcceeEeCCCCee--------cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcC
Q 044626 356 SGKCINHKAIPVGIGEDTQI--------KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIH 419 (429)
Q Consensus 356 ~~~~~~~~~~~~~ig~~~~i--------~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~ 419 (429)
+. .+..+.||.++.+ .++.||++|.||.+++|. .+.++|++++|+++ ++|-.
T Consensus 356 ~~-----ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~------~~~~Ig~~~~ig~~-s~v~~ 415 (446)
T PRK14353 356 AT-----IGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALV------APVTIGDGAYIASG-SVITE 415 (446)
T ss_pred cE-----EcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEe------CCCEECCCCEECCC-CEECc
Confidence 11 1111344444332 134455555555555554 66777788888777 44443
No 145
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.7e-11 Score=121.31 Aligned_cols=83 Identities=31% Similarity=0.435 Sum_probs=48.3
Q ss_pred CcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEecCCCCCC
Q 044626 321 GTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINKDGVQE 400 (429)
Q Consensus 321 ~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~ 400 (429)
++.||.++.||.|++|.||+|..+ |.||+|++|++|.||+||+||+||.|. ...+..
T Consensus 333 ~~~ig~gT~Ig~g~~I~NSVIG~~----------------------c~IgsN~~I~~S~iw~~v~Igdnc~I~-~aii~d 389 (673)
T KOG1461|consen 333 NVVIGAGTKIGSGSKISNSVIGAN----------------------CRIGSNVRIKNSFIWNNVTIGDNCRID-HAIICD 389 (673)
T ss_pred eEEecccccccCCCeeecceecCC----------------------CEecCceEEeeeeeecCcEECCCceEe-eeEeec
Confidence 666666666666666666665554 666666666666666666666666663 334444
Q ss_pred CeeecCCeEEccCEEEEcCCCEeCCCc
Q 044626 401 GDREANGYIISEGIVVIIHGAEIADGS 427 (429)
Q Consensus 401 ~~~~~~~~~i~~~~~~i~~~~~i~~~~ 427 (429)
+.++++++.+.+| +++|-++++|++-
T Consensus 390 ~v~i~~~~~l~~g-~vl~~~VVv~~~~ 415 (673)
T KOG1461|consen 390 DVKIGEGAILKPG-SVLGFGVVVGRNF 415 (673)
T ss_pred CcEeCCCcccCCC-cEEeeeeEeCCCc
Confidence 4444444444444 4444444444443
No 146
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.22 E-value=7.9e-11 Score=88.98 Aligned_cols=64 Identities=34% Similarity=0.550 Sum_probs=54.1
Q ss_pred ECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEE
Q 044626 308 VGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARI 386 (429)
Q Consensus 308 ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~i 386 (429)
||++|.|++ +.+.+++|+++|.|++++.|.++.+.++ +.|++++++.+++|++++.|
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~----------------------~~i~~~~~i~~~~i~~~~~i 59 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD----------------------VTIEDGCTIHHSIVADGAVI 59 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC----------------------CEECCCCEEeCcEEcCCCEE
Confidence 567777777 7777899999999999999988887776 78999999998889888888
Q ss_pred CCCcEEe
Q 044626 387 GKNVLII 393 (429)
Q Consensus 387 g~~~~i~ 393 (429)
++++.+.
T Consensus 60 ~~~~~i~ 66 (79)
T cd05787 60 GKGCTIP 66 (79)
T ss_pred CCCCEEC
Confidence 8888886
No 147
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.22 E-value=1.3e-10 Score=98.66 Aligned_cols=99 Identities=25% Similarity=0.270 Sum_probs=73.7
Q ss_pred CCcceeCCCCceecCCccCCCeEE-eeeEe----eCeEECCCcEEcc-eEee-----CcEEcCCcEECCCCEEecCeEEC
Q 044626 275 MRYNFYDRDCPVYTMPRCLPPTMI-REAVI----RDSVVGDGCIINR-CKIK-----GTVIGMRTRIGDGAVIEDSVIMG 343 (429)
Q Consensus 275 ~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i----~~~~ig~~~~i~~-~~v~-----~~~ig~~~~ig~~~~i~~~~~~~ 343 (429)
.+.+|++|++.+..++.|++.+.| +++.+ ..-.||+++-|-. +.++ .++||++|.||+++.|.+|.+-+
T Consensus 15 ~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~ 94 (176)
T COG0663 15 DPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGD 94 (176)
T ss_pred CCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECC
Confidence 456788888887777777776666 55555 3466777777776 6654 58899999999998888866655
Q ss_pred CcccccccccccCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEecC
Q 044626 344 ADFYQQGEDIQSSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLIINK 395 (429)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~ 395 (429)
+ +.||=++.| +++.||++|.||+|+.+..+
T Consensus 95 ~----------------------~lIGmgA~vldga~IG~~~iVgAgalV~~~ 125 (176)
T COG0663 95 N----------------------VLIGMGATVLDGAVIGDGSIVGAGALVTPG 125 (176)
T ss_pred C----------------------cEEecCceEeCCcEECCCcEEccCCcccCC
Confidence 5 778888877 55888888888888888743
No 148
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.22 E-value=2.3e-10 Score=101.96 Aligned_cols=41 Identities=32% Similarity=0.405 Sum_probs=20.2
Q ss_pred eEeCCCCee-cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccC
Q 044626 367 VGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEG 413 (429)
Q Consensus 367 ~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~ 413 (429)
+.|++++.+ .++.||++|.||+++.+. .+..+|++++++++
T Consensus 139 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~------~~~~ig~~~~v~~~ 180 (197)
T cd03360 139 VHIAPGVVLSGGVTIGEGAFIGAGATII------QGVTIGAGAIIGAG 180 (197)
T ss_pred CEECCCCEEcCCcEECCCCEECCCCEEc------CCCEECCCCEECCC
Confidence 444444444 234455555555554444 34445555555555
No 149
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.21 E-value=1.8e-10 Score=97.14 Aligned_cols=99 Identities=19% Similarity=0.336 Sum_probs=58.5
Q ss_pred CeEECCCcEEcc-eEe-eCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeec------
Q 044626 305 DSVVGDGCIINR-CKI-KGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIK------ 376 (429)
Q Consensus 305 ~~~ig~~~~i~~-~~v-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~------ 376 (429)
++.|++++.|.+ +.+ .++.||++|.|++++.|.+++.++.. +.|++++.+.
T Consensus 13 ~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~---------------------~~I~~~~~igg~~~~~ 71 (139)
T cd03350 13 GAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKN---------------------VHLSAGAVIGGVLEPL 71 (139)
T ss_pred CCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCC---------------------CEECCCCEECCccccc
Confidence 344444444444 333 25556666666666655555555442 5566666553
Q ss_pred ---ceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCCcc
Q 044626 377 ---KAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADGSI 428 (429)
Q Consensus 377 ---~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~v 428 (429)
.++|+++|.||++++|..+..+++.+.++.++.|.++ +.|+++ ++|++
T Consensus 72 ~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~-~~I~~~---~~~~~ 122 (139)
T cd03350 72 QATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQS-TPIYDR---ETGEI 122 (139)
T ss_pred ccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCC-eEeccc---CcccE
Confidence 4678888888888888766555566666666666666 566665 55554
No 150
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.20 E-value=8.3e-11 Score=96.37 Aligned_cols=80 Identities=24% Similarity=0.343 Sum_probs=51.8
Q ss_pred CeEECCCcEEcc-eEe-eCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEec
Q 044626 305 DSVVGDGCIINR-CKI-KGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDK 382 (429)
Q Consensus 305 ~~~ig~~~~i~~-~~v-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~ 382 (429)
++.||++|.|++ +.+ .+++||++|.|++++.+.+....+ ..+..++.+.+++||+
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~-----------------------~~~~~~~~~~~~~Ig~ 72 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPR-----------------------SKIYRKWELKGTTVKR 72 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCc-----------------------cccccccccCCcEECC
Confidence 567777777777 444 256666666666666666544333 2345567788888888
Q ss_pred CcEECCCcEEecCCCCCCCeeecCCeEEccC
Q 044626 383 NARIGKNVLIINKDGVQEGDREANGYIISEG 413 (429)
Q Consensus 383 ~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~ 413 (429)
+|.||+++.+.. +..+++++.|+++
T Consensus 73 ~~~Ig~~~~v~~------~~~ig~~~~i~~~ 97 (119)
T cd03358 73 GASIGANATILP------GVTIGEYALVGAG 97 (119)
T ss_pred CcEECcCCEEeC------CcEECCCCEEccC
Confidence 888888888863 3444555555555
No 151
>PLN02296 carbonate dehydratase
Probab=99.20 E-value=2.6e-10 Score=105.91 Aligned_cols=96 Identities=22% Similarity=0.312 Sum_probs=67.4
Q ss_pred CcceeCCCCceecCCccCCCeEE-eeeEee----CeEECCCcEEcc-eEee-----------CcEEcCCcEECCCCEEec
Q 044626 276 RYNFYDRDCPVYTMPRCLPPTMI-REAVIR----DSVVGDGCIINR-CKIK-----------GTVIGMRTRIGDGAVIED 338 (429)
Q Consensus 276 ~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~i~~-~~v~-----------~~~ig~~~~ig~~~~i~~ 338 (429)
+..++++++.+..++.|++++.| .++.+. ++.||++|.|++ +.|. +|+||++|.||++|+|.+
T Consensus 57 ~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g 136 (269)
T PLN02296 57 KDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHG 136 (269)
T ss_pred CCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecC
Confidence 34566676666656666666666 566553 357888888888 7763 578888888888888766
Q ss_pred CeEECCcccccccccccCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEe
Q 044626 339 SVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLII 393 (429)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~ 393 (429)
+++.++ +.||.++.| .++.|+++|.|++++.+.
T Consensus 137 ~~Igd~----------------------v~IG~ga~I~~gv~Ig~~a~IgagSvV~ 170 (269)
T PLN02296 137 CTVEDE----------------------AFVGMGATLLDGVVVEKHAMVAAGALVR 170 (269)
T ss_pred CEECCC----------------------cEECCCcEECCCeEECCCCEECCCCEEe
Confidence 655444 677777776 567777777777777776
No 152
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.19 E-value=1.1e-10 Score=118.47 Aligned_cols=44 Identities=34% Similarity=0.553 Sum_probs=27.9
Q ss_pred eEeeCeEECCCcEEcc-eEee-CcEEcCCcEECCCCEEecCeEECC
Q 044626 301 AVIRDSVVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIEDSVIMGA 344 (429)
Q Consensus 301 ~~i~~~~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~~~~~~~ 344 (429)
+.+.++.||++|.|+. +.+. ++.||++|.|++++.|.++.+..+
T Consensus 312 ~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~ 357 (458)
T PRK14354 312 SVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEG 357 (458)
T ss_pred EEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCC
Confidence 3345666777777777 6665 677777777777776665554443
No 153
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.19 E-value=4e-10 Score=96.59 Aligned_cols=97 Identities=22% Similarity=0.204 Sum_probs=74.4
Q ss_pred CCcceeCCCCceecCCccCCCeEE-eeeEeeC----eEECCCcEEcc-eEeeC-----cEEcCCcEECCCCEEecCeEEC
Q 044626 275 MRYNFYDRDCPVYTMPRCLPPTMI-REAVIRD----SVVGDGCIINR-CKIKG-----TVIGMRTRIGDGAVIEDSVIMG 343 (429)
Q Consensus 275 ~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~~----~~ig~~~~i~~-~~v~~-----~~ig~~~~ig~~~~i~~~~~~~ 343 (429)
++.+++++++.+...+.+++++.| +++.+.. +.||++|.|++ |.+.. ++||+++.|++++.+.++++.+
T Consensus 4 ~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~ 83 (154)
T cd04650 4 SPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGN 83 (154)
T ss_pred CCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECC
Confidence 456778888888777888888888 5776643 59999999999 88753 7889999999998887765444
Q ss_pred CcccccccccccCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEe
Q 044626 344 ADFYQQGEDIQSSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLII 393 (429)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~ 393 (429)
+ +.||.++.+ .++.||+++.+++++.+.
T Consensus 84 ~----------------------~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~ 112 (154)
T cd04650 84 Y----------------------VIVGMGAILLNGAKIGDHVIIGAGAVVT 112 (154)
T ss_pred C----------------------CEEcCCCEEeCCCEECCCCEECCCCEEC
Confidence 4 778888777 567777777777777765
No 154
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.18 E-value=9e-11 Score=107.05 Aligned_cols=100 Identities=24% Similarity=0.342 Sum_probs=66.0
Q ss_pred cceeCCCCceecCCccCCCeEE-eeeEe-eCeEECCCcEEcc-eEee-CcEEcCCcEECCCCEEecCeEECCcccccccc
Q 044626 277 YNFYDRDCPVYTMPRCLPPTMI-REAVI-RDSVVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIEDSVIMGADFYQQGED 352 (429)
Q Consensus 277 ~~~~~~~~~~~~~~~i~~~~~i-~~~~i-~~~~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~ 352 (429)
...+++.+.+...+.|++++.+ .++.+ .++.||++|.|++ +.+. +++||++|.||.++.|.+.. ...
T Consensus 86 ~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~--~~~------- 156 (231)
T TIGR03532 86 NARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVI--EPP------- 156 (231)
T ss_pred ccEECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEcccc--ccc-------
Confidence 3455666666666666666666 45555 4788888888888 6664 67777777777777776521 110
Q ss_pred cccCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEecC
Q 044626 353 IQSSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLIINK 395 (429)
Q Consensus 353 ~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~ 395 (429)
-...+.||++|.| .+++|.++++||+++.|+.+
T Consensus 157 ----------~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~Igag 190 (231)
T TIGR03532 157 ----------SAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAG 190 (231)
T ss_pred ----------cCCCeEECCCcEECCCCEEcCCCEECCCCEECCC
Confidence 0011678888887 57777777777777777743
No 155
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.17 E-value=1.8e-10 Score=102.28 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=31.8
Q ss_pred eEeCCCCeec-----ceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCCccC
Q 044626 367 VGIGEDTQIK-----KAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADGSII 429 (429)
Q Consensus 367 ~~ig~~~~i~-----~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~vv 429 (429)
+.||++|.|. +++|++++.||.++.+. +..++.+..+|.++.+.++ ++||+++.|++||+|
T Consensus 56 ~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~-g~vIG~~v~IG~ga~V~~g-~~IG~~s~Vgags~V 121 (196)
T PRK13627 56 ANLQDGCIMHGYCDTDTIVGENGHIGHGAILH-GCVIGRDALVGMNSVIMDG-AVIGEESIVAAMSFV 121 (196)
T ss_pred CEECCCCEEeCCCCCCCEECCCCEECCCcEEe-eEEECCCCEECcCCccCCC-cEECCCCEEcCCCEE
Confidence 4555555552 34555555555555543 2234444445555555555 556666666666543
No 156
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.15 E-value=2.2e-10 Score=112.29 Aligned_cols=119 Identities=19% Similarity=0.221 Sum_probs=84.6
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++|+|+++...+.+.+++..
T Consensus 5 ~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~~------------ 66 (366)
T PRK14489 5 QIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLFPG------------ 66 (366)
T ss_pred CceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhccC------------
Confidence 4679999999999995 269999999999 999999999975 4899998776555444433221
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eEec-cHHHHHHHHHhcCCce
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LYKM-DYQRLIEAHRNNKADI 145 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~~~-~l~~~~~~~~~~~~~~ 145 (429)
+.++..... + ..|..++++.+++.++ .+.+++++||+ +... .+..+++.+...++++
T Consensus 67 ~~~i~d~~~--g---~~G~~~si~~gl~~~~---~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~ 125 (366)
T PRK14489 67 LPVYPDILP--G---FQGPLSGILAGLEHAD---SEYLFVVACDTPFLPENLVKRLSKALAIEGADI 125 (366)
T ss_pred CcEEecCCC--C---CCChHHHHHHHHHhcC---CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeE
Confidence 112211111 1 1488899999988775 37799999998 4444 4577887765555443
No 157
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.15 E-value=3.9e-10 Score=114.81 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=32.4
Q ss_pred cCCccCCCeEE-eeeEe-eCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECC
Q 044626 288 TMPRCLPPTMI-REAVI-RDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGA 344 (429)
Q Consensus 288 ~~~~i~~~~~i-~~~~i-~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~ 344 (429)
+.+.|++++.| +++.| .++.||++|.|++ |.|++|+||++|.|+++++|.++++.++
T Consensus 269 ~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~ 328 (481)
T PRK14358 269 DTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAG 328 (481)
T ss_pred CCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCc
Confidence 34445555555 34554 2455666666666 6666666666666666666655544443
No 158
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.14 E-value=2.1e-10 Score=116.41 Aligned_cols=70 Identities=24% Similarity=0.322 Sum_probs=49.1
Q ss_pred eCeEECCCcEEcc-eEee-CcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEe
Q 044626 304 RDSVVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVID 381 (429)
Q Consensus 304 ~~~~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig 381 (429)
+++.||++|.|++ +.+. +++||++|.|+++|+|.++++.++ +.|++++.+.+++||
T Consensus 267 ~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~----------------------~~I~~~~~i~~~~i~ 324 (459)
T PRK14355 267 RGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDD----------------------VTVKAGSVLEDSVVG 324 (459)
T ss_pred CCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCC----------------------CEECCCeEEeCCEEC
Confidence 3555666666666 5553 799999999999999988777776 666666666666666
Q ss_pred cCcEECCCcEEecC
Q 044626 382 KNARIGKNVLIINK 395 (429)
Q Consensus 382 ~~~~ig~~~~i~~~ 395 (429)
++|.||+++++..+
T Consensus 325 ~~~~ig~~~~i~~~ 338 (459)
T PRK14355 325 DDVAIGPMAHLRPG 338 (459)
T ss_pred CCCEECCCCEECCC
Confidence 66666655555443
No 159
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.14 E-value=4.3e-10 Score=85.21 Aligned_cols=63 Identities=22% Similarity=0.431 Sum_probs=55.1
Q ss_pred CeEECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCc
Q 044626 305 DSVVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNA 384 (429)
Q Consensus 305 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~ 384 (429)
++.|++++.|++ +++|+++|+||+++.|.+++++++ +.|++++.+.++++++++
T Consensus 5 ~~~I~~~~~i~~----~~~Ig~~~~Ig~~~~i~~sii~~~----------------------~~i~~~~~i~~sii~~~~ 58 (80)
T cd05824 5 SAKIGKTAKIGP----NVVIGPNVTIGDGVRLQRCVILSN----------------------STVRDHSWVKSSIVGWNS 58 (80)
T ss_pred CCEECCCCEECC----CCEECCCCEECCCcEEeeeEEcCC----------------------CEECCCCEEeCCEEeCCC
Confidence 356777777777 899999999999999999998887 899999999999999999
Q ss_pred EECCCcEEe
Q 044626 385 RIGKNVLII 393 (429)
Q Consensus 385 ~ig~~~~i~ 393 (429)
.|++++.+.
T Consensus 59 ~v~~~~~~~ 67 (80)
T cd05824 59 TVGRWTRLE 67 (80)
T ss_pred EECCCcEEe
Confidence 999998886
No 160
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.14 E-value=3.4e-10 Score=85.53 Aligned_cols=74 Identities=28% Similarity=0.464 Sum_probs=61.4
Q ss_pred CCCeEE-eeeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeC
Q 044626 293 LPPTMI-REAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIG 370 (429)
Q Consensus 293 ~~~~~i-~~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 370 (429)
++.+.+ .++.+.++.||++|+|++ +.+.+++|+++|+|++++.|.+++++++ +.|+
T Consensus 3 g~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~----------------------~~i~ 60 (79)
T cd03356 3 GESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN----------------------AVIG 60 (79)
T ss_pred cCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC----------------------CEEC
Confidence 344444 345555689999999999 9999999999999999999999988776 8999
Q ss_pred CCCeecc-eEEecCcEECC
Q 044626 371 EDTQIKK-AVIDKNARIGK 388 (429)
Q Consensus 371 ~~~~i~~-~~ig~~~~ig~ 388 (429)
+++.+.+ +++|++++|++
T Consensus 61 ~~~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 61 ENVRVVNLCIIGDDVVVED 79 (79)
T ss_pred CCCEEcCCeEECCCeEECc
Confidence 9999966 88888888764
No 161
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.13 E-value=1.4e-09 Score=104.89 Aligned_cols=108 Identities=7% Similarity=0.105 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
+.+||||||+|+||+ .+|+|+|+.|+ ||++|+++.|... +++|+|+++... . .+.. .. . +
T Consensus 161 i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~~-~~~ViVv~~~~~--~-~~~~--~~--~------v 220 (346)
T PRK14500 161 LYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAKY-CEQVFLSARPSQ--W-QGTP--LE--N------L 220 (346)
T ss_pred ceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHhh-CCEEEEEeCchH--h-hhcc--cc--C------C
Confidence 579999999999998 69999999999 9999999998764 889988875421 1 1100 00 0 1
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eEecc-HHHHHHHH
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LYKMD-YQRLIEAH 138 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~~~~-l~~~~~~~ 138 (429)
.++.... +..|...+++.++..... +.++++.||+ +.+.+ +..+++.+
T Consensus 221 ~~I~D~~------~~~GPlagI~aaL~~~~~---~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 221 PTLPDRG------ESVGPISGILTALQSYPG---VNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred eEEeCCC------CCCChHHHHHHHHHhCCC---CCEEEEECCcCCCCHHHHHHHHHhh
Confidence 1221111 136999999999986542 6889999999 55444 57777765
No 162
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.13 E-value=1.9e-09 Score=105.84 Aligned_cols=107 Identities=9% Similarity=0.118 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
+.+||||||+|+||+ .+|+|+|++|+ |||+|+++.+.. .+++++|+++...... +.. ++ +
T Consensus 175 i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~-~~~~vvV~~~~~~~~~---~~~----~~------v 234 (369)
T PRK14490 175 LSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRP-HCQEVFISCRAEQAEQ---YRS----FG------I 234 (369)
T ss_pred ceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHh-hCCEEEEEeCCchhhH---Hhh----cC------C
Confidence 579999999999998 59999999999 999999999976 4788888776542211 111 11 1
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eEecc-HHHHHHH
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LYKMD-YQRLIEA 137 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~~~~-l~~~~~~ 137 (429)
.++.... . ..|...+++.++.... .+.++++.||+ +.+.+ +..+++.
T Consensus 235 ~~i~d~~--~----~~Gpl~gi~~al~~~~---~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 235 PLITDSY--L----DIGPLGGLLSAQRHHP---DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred cEEeCCC--C----CCCcHHHHHHHHHhCC---CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 2332111 1 1588888888876544 37899999999 55444 5666654
No 163
>PLN02472 uncharacterized protein
Probab=99.12 E-value=7.5e-10 Score=101.46 Aligned_cols=94 Identities=14% Similarity=0.240 Sum_probs=55.8
Q ss_pred ceeCCCCceecCCccCCCeEE-eeeEee----CeEECCCcEEcc-eEee-----------CcEEcCCcEECCCCEEecCe
Q 044626 278 NFYDRDCPVYTMPRCLPPTMI-REAVIR----DSVVGDGCIINR-CKIK-----------GTVIGMRTRIGDGAVIEDSV 340 (429)
Q Consensus 278 ~~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~i~~-~~v~-----------~~~ig~~~~ig~~~~i~~~~ 340 (429)
+++.+++.+..++.|++.+.| .++.+. ...||++|.|++ |.|. +++||++|.||++|.|.+++
T Consensus 66 ~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~ 145 (246)
T PLN02472 66 AYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCT 145 (246)
T ss_pred CEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeE
Confidence 344455544444444444444 333331 245666666665 5552 57888888888888877655
Q ss_pred EECCcccccccccccCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEe
Q 044626 341 IMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLII 393 (429)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~ 393 (429)
+.++ +.||.+|.| .+++|+++|.|++++.+.
T Consensus 146 Igd~----------------------v~IG~~svI~~gavIg~~~~Ig~gsvV~ 177 (246)
T PLN02472 146 IEPE----------------------CIIGQHSILMEGSLVETHSILEAGSVLP 177 (246)
T ss_pred EcCC----------------------CEECCCCEECCCCEECCCCEECCCCEEC
Confidence 5444 677777666 666666666666666665
No 164
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.12 E-value=3.5e-10 Score=114.59 Aligned_cols=66 Identities=35% Similarity=0.510 Sum_probs=36.9
Q ss_pred CeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeec-ceEEec
Q 044626 305 DSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIK-KAVIDK 382 (429)
Q Consensus 305 ~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~ig~ 382 (429)
++.||++|.|++ +.+.+++|+++|+|+ ++++.++++.++ +.||+++.|. +++||+
T Consensus 280 ~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~----------------------~~I~~~~~I~~~~~Ig~ 336 (450)
T PRK14360 280 NTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDG----------------------VKIGPYAHLRPEAQIGS 336 (450)
T ss_pred CcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCC----------------------cEECCCCEECCCCEEeC
Confidence 445555555555 555555555555553 233444333333 6677777774 677777
Q ss_pred CcEECCCcEEe
Q 044626 383 NARIGKNVLII 393 (429)
Q Consensus 383 ~~~ig~~~~i~ 393 (429)
+|+||+++.+.
T Consensus 337 ~~~Ig~~~~i~ 347 (450)
T PRK14360 337 NCRIGNFVEIK 347 (450)
T ss_pred ceEECCCEEEe
Confidence 77777766653
No 165
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.12 E-value=7e-10 Score=102.50 Aligned_cols=105 Identities=18% Similarity=0.298 Sum_probs=54.6
Q ss_pred CCccCCCeEEeeeEeeCeEECCCcEEcceEe-eCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCccee
Q 044626 289 MPRCLPPTMIREAVIRDSVVGDGCIINRCKI-KGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPV 367 (429)
Q Consensus 289 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~v-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (429)
++++.|++.+. .++.||+++.|.++.+ .++.||++|.|+.++.|++++.++.. +
T Consensus 103 ~~rI~p~a~V~----~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~n---------------------v 157 (272)
T PRK11830 103 GVRVVPGAVVR----RGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN---------------------V 157 (272)
T ss_pred CcEEcCCeEEC----CCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCC---------------------c
Confidence 34444554443 3445555555554222 24555555555555555555444431 4
Q ss_pred EeCCCCeec---------ceEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcC
Q 044626 368 GIGEDTQIK---------KAVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIH 419 (429)
Q Consensus 368 ~ig~~~~i~---------~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~ 419 (429)
.|+.++.|. .++||++|.||.+|.|..+..+++++.++.+++|+.+ +.|++
T Consensus 158 ~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~g-t~I~~ 217 (272)
T PRK11830 158 HLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQS-TKIYD 217 (272)
T ss_pred EECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC-eEECc
Confidence 555555443 3566677777776666645444444455555555555 45554
No 166
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.11 E-value=4.6e-10 Score=89.51 Aligned_cols=59 Identities=29% Similarity=0.496 Sum_probs=51.8
Q ss_pred cEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEECCCc
Q 044626 312 CIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNV 390 (429)
Q Consensus 312 ~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~ 390 (429)
++|++ +.+++++||++|.|+ ++.|.+++++.+ +.|++++.|.+|+|++++.||+++
T Consensus 2 ~~i~~~~~i~~s~Ig~~~~I~-~~~I~~svi~~~----------------------~~Ig~~~~I~~siI~~~~~Ig~~~ 58 (104)
T cd04651 2 PYIGRRGEVKNSLVSEGCIIS-GGTVENSVLFRG----------------------VRVGSGSVVEDSVIMPNVGIGRNA 58 (104)
T ss_pred ceecCCCEEEeEEECCCCEEc-CeEEEeCEEeCC----------------------CEECCCCEEEEeEEcCCCEECCCC
Confidence 34444 555589999999999 999999999887 899999999999999999999999
Q ss_pred EEe
Q 044626 391 LII 393 (429)
Q Consensus 391 ~i~ 393 (429)
.+.
T Consensus 59 ~i~ 61 (104)
T cd04651 59 VIR 61 (104)
T ss_pred EEE
Confidence 994
No 167
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.10 E-value=4.9e-10 Score=112.88 Aligned_cols=104 Identities=24% Similarity=0.345 Sum_probs=60.9
Q ss_pred CccCCCeEEeeeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECC-cccccccccccCCccccCCccee
Q 044626 290 PRCLPPTMIREAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGA-DFYQQGEDIQSSGKCINHKAIPV 367 (429)
Q Consensus 290 ~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 367 (429)
+.|++++.|.++.+.++.||++|.|++ +.+.+|.||++|+|++.. +.+ +.+++ ..+. .+
T Consensus 283 ~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~-~~~-~~i~~~~~i~-----------------d~ 343 (430)
T PRK14359 283 SHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAK-LNG-VKAGHLSYLG-----------------DC 343 (430)
T ss_pred eEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccE-ecc-cccccccccc-----------------CC
Confidence 344555555445567888999999998 878888888888666532 222 22221 1100 04
Q ss_pred EeCCCCee-cc-------------eEEecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcC
Q 044626 368 GIGEDTQI-KK-------------AVIDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIH 419 (429)
Q Consensus 368 ~ig~~~~i-~~-------------~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~ 419 (429)
.||++|.| .+ +.||++|.||.++.|. .+.++|++++|++| ++|-.
T Consensus 344 ~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~------~~~~ig~~~~i~~g-~~v~~ 402 (430)
T PRK14359 344 EIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLV------APVNIEDNVLIAAG-STVTK 402 (430)
T ss_pred EECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEe------CCcEECCCCEECCC-CEEcc
Confidence 45555554 22 4555555555555554 67777888888888 34433
No 168
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.09 E-value=1.1e-09 Score=90.51 Aligned_cols=53 Identities=15% Similarity=0.313 Sum_probs=29.6
Q ss_pred eCCCCceecCCccCCCeEEeeeEeeCeEECCCcEEcceEe-eCcEEcCCcEECCCCEEe
Q 044626 280 YDRDCPVYTMPRCLPPTMIREAVIRDSVVGDGCIINRCKI-KGTVIGMRTRIGDGAVIE 337 (429)
Q Consensus 280 ~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~v-~~~~ig~~~~ig~~~~i~ 337 (429)
+.+.+.+++++.+.+.+++. -++.||++|.|.. .+ .+++||++|.||+++.|.
T Consensus 10 V~~~a~IG~GtvI~~gavV~----~~a~IG~~~iIn~-~ig~~a~Ighd~~IG~~~~I~ 63 (147)
T cd04649 10 VRLGAYLAEGTTVMHEGFVN----FNAGTLGNCMVEG-RISSGVIVGKGSDVGGGASIM 63 (147)
T ss_pred ECCCCEECCCcEECCCCEEc----cCCEECCCeEECC-cccCCEEECCCCEECCCCEEE
Confidence 33444444444444433332 4677777777761 11 167777777777777776
No 169
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.08 E-value=8.5e-10 Score=97.58 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=78.7
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGF 80 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 80 (429)
+|.+||||||+|+|| .+|+|++++|+ ||++|+++.|....- .++|....+... +.. .+.
T Consensus 4 ~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~-----~g~----- 62 (192)
T COG0746 4 PMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YAE-----FGL----- 62 (192)
T ss_pred CceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hhc-----cCC-----
Confidence 478999999999999 48999999999 999999999988653 555555443331 221 222
Q ss_pred EEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eEeccH-HHHHHHHHhcC
Q 044626 81 VEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LYKMDY-QRLIEAHRNNK 142 (429)
Q Consensus 81 v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~~~~l-~~~~~~~~~~~ 142 (429)
+++.... ++ .|....++.+++... .+.++++.||+ +...++ ..+.....+..
T Consensus 63 -~vv~D~~-----~~-~GPL~Gi~~al~~~~---~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 63 -PVVPDEL-----PG-FGPLAGILAALRHFG---TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred -ceeecCC-----CC-CCCHHHHHHHHHhCC---CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 1332211 11 299999999998887 38999999999 555555 66666655444
No 170
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.08 E-value=8.9e-10 Score=98.84 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=40.6
Q ss_pred eEEecCCHHHHHHHhHhhhcccCCCcceeCCCCceecCCccCCCeEE-eeeEe-eCeEECCCcEEcc-eEee-CcEEcCC
Q 044626 252 YWEDMRSIEAFYHANMECIKRSNMRYNFYDRDCPVYTMPRCLPPTMI-REAVI-RDSVVGDGCIINR-CKIK-GTVIGMR 327 (429)
Q Consensus 252 ~~~~i~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i-~~~~ig~~~~i~~-~~v~-~~~ig~~ 327 (429)
.+..++.+....+....+.+.......++++.+.+.+++.+++++.+ +++.+ .++.||++|.|++ +.+. ++.||++
T Consensus 62 ~iiai~~~~~~~~i~~~l~~~g~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~ 141 (201)
T TIGR03570 62 LVVAIGDNKLRRRLFEKLKAKGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDY 141 (201)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCC
Confidence 35555555555555555443322233444444444444444444444 33333 2345555555544 3332 3444444
Q ss_pred cEECCCCEEecCeEE
Q 044626 328 TRIGDGAVIEDSVIM 342 (429)
Q Consensus 328 ~~ig~~~~i~~~~~~ 342 (429)
|.|+.++.+...+.+
T Consensus 142 ~~i~~~~~i~~~~~i 156 (201)
T TIGR03570 142 VHIAPGVTLSGGVVI 156 (201)
T ss_pred CEECCCCEEeCCcEE
Confidence 444444444433333
No 171
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.04 E-value=2.9e-09 Score=91.29 Aligned_cols=96 Identities=24% Similarity=0.271 Sum_probs=71.3
Q ss_pred CcceeCCCCceecCCccCCCeEE-eeeEee----CeEECCCcEEcc-eEeeC-----cEEcCCcEECCCCEEecCeEECC
Q 044626 276 RYNFYDRDCPVYTMPRCLPPTMI-REAVIR----DSVVGDGCIINR-CKIKG-----TVIGMRTRIGDGAVIEDSVIMGA 344 (429)
Q Consensus 276 ~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~i~~-~~v~~-----~~ig~~~~ig~~~~i~~~~~~~~ 344 (429)
+..++++++.+..+..+++++.| +++.|. .+.||++|.|++ +.+.. ++||++|.|+.+|.+.++.+.++
T Consensus 4 ~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~ 83 (153)
T cd04645 4 PSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDN 83 (153)
T ss_pred CCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCC
Confidence 34567777776666667777777 456553 469999999999 88875 59999999999999887655544
Q ss_pred cccccccccccCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEe
Q 044626 345 DFYQQGEDIQSSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLII 393 (429)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~ 393 (429)
+.|+.++.+ .+++|+++|.|++++.+.
T Consensus 84 ----------------------~~Ig~~~~v~~~~~ig~~~~ig~~~~v~ 111 (153)
T cd04645 84 ----------------------CLIGMGAIILDGAVIGKGSIVAAGSLVP 111 (153)
T ss_pred ----------------------CEECCCCEEcCCCEECCCCEECCCCEEC
Confidence 778888777 477777777777777665
No 172
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.02 E-value=2e-09 Score=81.21 Aligned_cols=74 Identities=28% Similarity=0.414 Sum_probs=56.2
Q ss_pred CCCeEE-eeeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeC
Q 044626 293 LPPTMI-REAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIG 370 (429)
Q Consensus 293 ~~~~~i-~~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 370 (429)
++++.+ +++.+.++.|+++|.|++ +.+.++.|++++.|++++.|.++++.++ +.|+
T Consensus 3 g~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~----------------------~~i~ 60 (79)
T cd05787 3 GRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG----------------------AVIG 60 (79)
T ss_pred cCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCC----------------------CEEC
Confidence 344444 345556789999999999 9899999999999999999988777766 7788
Q ss_pred CCCee-cceEEecCcEECC
Q 044626 371 EDTQI-KKAVIDKNARIGK 388 (429)
Q Consensus 371 ~~~~i-~~~~ig~~~~ig~ 388 (429)
+++.+ .+++|++++.||+
T Consensus 61 ~~~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 61 KGCTIPPGSLISFGVVIGD 79 (79)
T ss_pred CCCEECCCCEEeCCcEeCc
Confidence 87777 3566666666553
No 173
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.02 E-value=1.6e-09 Score=88.67 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=11.0
Q ss_pred eEeCCCCee-cceEEecCcEECCCcEE
Q 044626 367 VGIGEDTQI-KKAVIDKNARIGKNVLI 392 (429)
Q Consensus 367 ~~ig~~~~i-~~~~ig~~~~ig~~~~i 392 (429)
+.||+++.+ .++.||+++.|++++.+
T Consensus 74 ~~Ig~~~~v~~~~~ig~~~~i~~~~~v 100 (119)
T cd03358 74 ASIGANATILPGVTIGEYALVGAGAVV 100 (119)
T ss_pred cEECcCCEEeCCcEECCCCEEccCCEE
Confidence 344444444 23444444444444444
No 174
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.97 E-value=4.4e-09 Score=79.61 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=53.4
Q ss_pred eCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecc-eEEe
Q 044626 304 RDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKK-AVID 381 (429)
Q Consensus 304 ~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~-~~ig 381 (429)
+++.|+++|.|++ +.++++++++++.|++++.|.++++..+ +.|++++.+.. +++|
T Consensus 16 ~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~----------------------~~v~~~~~~~~~~~ig 73 (80)
T cd05824 16 PNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN----------------------STVGRWTRLENVTVLG 73 (80)
T ss_pred CCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC----------------------CEECCCcEEecCEEEC
Confidence 4678888888888 8888999999999999999999988877 78999988855 7777
Q ss_pred cCcEECC
Q 044626 382 KNARIGK 388 (429)
Q Consensus 382 ~~~~ig~ 388 (429)
++++|++
T Consensus 74 ~~~~i~~ 80 (80)
T cd05824 74 DDVTIKD 80 (80)
T ss_pred CceEECC
Confidence 7777763
No 175
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.94 E-value=6.4e-09 Score=89.92 Aligned_cols=86 Identities=22% Similarity=0.372 Sum_probs=47.8
Q ss_pred ceecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEeeC-------------cEEcCCcEECCCCEEecCeEECCcccccc
Q 044626 285 PVYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIKG-------------TVIGMRTRIGDGAVIEDSVIMGADFYQQG 350 (429)
Q Consensus 285 ~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~~-------------~~ig~~~~ig~~~~i~~~~~~~~~~~~~~ 350 (429)
.++.++.++|++.+.+. +.++.||++|.|++ +.|.. ++||+++.|++++.+.++.+..+
T Consensus 23 ~ig~~~~I~~~~~I~g~-~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~------ 95 (161)
T cd03359 23 VLNGKTIIQSDVIIRGD-LATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSY------ 95 (161)
T ss_pred EECCceEEcCCCEEeCC-CcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCC------
Confidence 34455555565555311 12356777777777 66643 45666666666666665544443
Q ss_pred cccccCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEe
Q 044626 351 EDIQSSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLII 393 (429)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~ 393 (429)
+.||+++.| .++.|++++.|++++.+.
T Consensus 96 ----------------v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~ 123 (161)
T cd03359 96 ----------------VHIGKNCVIGRRCIIKDCVKILDGTVVP 123 (161)
T ss_pred ----------------cEECCCCEEcCCCEECCCcEECCCCEEC
Confidence 556666555 445555555555555554
No 176
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.94 E-value=6.2e-09 Score=82.32 Aligned_cols=65 Identities=23% Similarity=0.334 Sum_probs=42.0
Q ss_pred CeEECCCcEEcc-eEee-CcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEec
Q 044626 305 DSVVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDK 382 (429)
Q Consensus 305 ~~~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~ 382 (429)
.+.||++|.|++ +.|. +++||++|.||. .|.++++++. +.|++++.+.+++||+
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~----------------------~~i~~~~~lg~siIg~ 84 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY----------------------SNKQHDGFLGHSYLGS 84 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC----------------------CEecCcCEEeeeEECC
Confidence 345555555555 4443 566666666654 4566666655 6677777777777777
Q ss_pred CcEECCCcEEe
Q 044626 383 NARIGKNVLII 393 (429)
Q Consensus 383 ~~~ig~~~~i~ 393 (429)
++.||+++.+.
T Consensus 85 ~v~ig~~~~~~ 95 (101)
T cd05635 85 WCNLGAGTNNS 95 (101)
T ss_pred CCEECCCceec
Confidence 77777777764
No 177
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=2.2e-09 Score=100.79 Aligned_cols=89 Identities=24% Similarity=0.285 Sum_probs=78.5
Q ss_pred CCceecCCccCCCeEE-eeeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccc
Q 044626 283 DCPVYTMPRCLPPTMI-REAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCI 360 (429)
Q Consensus 283 ~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 360 (429)
.+-++....+++.+.+ .++.++.++||.+|.||+ ++|.+|.+.+|+.||+|+.|++|+|..+
T Consensus 328 ~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~g---------------- 391 (433)
T KOG1462|consen 328 VALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMG---------------- 391 (433)
T ss_pred eeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceeccc----------------
Confidence 3556666677777777 477788999999999999 9999999999999999999999999887
Q ss_pred cCCcceeEeCCCCeecceEEecCcEECCCcEEe
Q 044626 361 NHKAIPVGIGEDTQIKKAVIDKNARIGKNVLII 393 (429)
Q Consensus 361 ~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~ 393 (429)
+.||+++.+.+|.||.+=+|.+..+-.
T Consensus 392 ------A~Ig~gs~L~nC~Ig~~yvVeak~~~~ 418 (433)
T KOG1462|consen 392 ------AQIGSGSKLKNCIIGPGYVVEAKGKHG 418 (433)
T ss_pred ------ceecCCCeeeeeEecCCcEEccccccc
Confidence 899999999999999999999766664
No 178
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.93 E-value=7.2e-08 Score=92.33 Aligned_cols=204 Identities=14% Similarity=0.127 Sum_probs=120.5
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccC---CcchhHHHHHHhhHhcC------------CCeEEEEee-cChhHHHH
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLA---ANYRLVDAVVSNCINSN------------INKIYALTQ-FNSTSLNL 64 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~---g~~plI~~~i~~l~~~g------------i~~I~Iv~~-~~~~~i~~ 64 (429)
+|.+||||||.||||. ...||+|+||+ |+ |++++.++.+...+ + .++|.++ +..+++.+
T Consensus 15 ~va~viLaGG~GTRLg---~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~i-p~~imtS~~t~~~t~~ 89 (323)
T cd04193 15 KVAVLLLAGGQGTRLG---FDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPI-PWYIMTSEATHEETRK 89 (323)
T ss_pred CEEEEEECCCcccccC---CCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCc-eEEEEcChhHhHHHHH
Confidence 4779999999999994 77899999998 78 99999999998742 3 3557777 56788999
Q ss_pred HHhccccCcccCCCCcEEEEeccccc---------------cc-cCcccCcHHHHHHHH-----HHhhcCCCCeEEEEcC
Q 044626 65 HLSRAFSGILRGKDGFVEVIAAYQSL---------------ED-QDWFQGNADAIRRCL-----WVLEEYPVTEFLILPG 123 (429)
Q Consensus 65 ~l~~~~~~~~~~~~~~v~i~~~~~~~---------------~~-~~~~~Gt~~al~~~~-----~~i~~~~~~~~lvl~g 123 (429)
++.+... +|+... .+.+..|.. .. ...|-|.++.+.... +.+....-+.+.+.+.
T Consensus 90 ~~~~~~~-fGl~~~---~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~v 165 (323)
T cd04193 90 FFKENNY-FGLDPE---QVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSV 165 (323)
T ss_pred HHHhCCc-CCCCCc---eEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEec
Confidence 9987433 455321 122222210 00 012678877655432 3333334589999999
Q ss_pred ceeE-eccHHHHHHHHHhcCCceEEEEEeccCCCCCCccEEE-EcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCC
Q 044626 124 HHLY-KMDYQRLIEAHRNNKADITIVALNAIRDKHPGFGLLR-VNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGN 201 (429)
Q Consensus 124 D~i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g~v~-~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~ 201 (429)
|++. ...--.++-++.++++++.+-+.+....+ ..-|.+. .|..=.+.++.+-+...... .+. ... ..-+
T Consensus 166 DN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-ekvG~l~~~~g~~~vvEysel~~~~~~~---~~~--~g~--l~f~ 237 (323)
T cd04193 166 DNILVKVADPVFIGFCISKGADVGAKVVRKRYPT-EKVGVVVLVDGKPQVVEYSEISDELAEK---RDA--DGE--LQYN 237 (323)
T ss_pred CcccccccCHHHhHHHHHcCCceEEEEEECCCCC-CceeEEEEECCeEEEEEeecCCHHHHhc---cCc--CCc--Eecc
Confidence 9953 23223567788888888876443322111 2234443 33333566666654432100 000 000 0011
Q ss_pred cceeeEEEEcHHHHHHHHHh
Q 044626 202 FPSMGIYLINRDTMSRLLKE 221 (429)
Q Consensus 202 ~~~~Giy~~~~~~l~~~l~~ 221 (429)
.-+..+.+|+-++|+++++.
T Consensus 238 ~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 238 AGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred cchHhhheeCHHHHHHHHhh
Confidence 23445678888888876653
No 179
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.92 E-value=2.5e-10 Score=106.43 Aligned_cols=201 Identities=13% Similarity=0.069 Sum_probs=114.1
Q ss_pred EEEEEcCCCCCCcccccccccccccccC---CcchhHHHHHHhhHh--------cCCCeEEEEeecChhHHHHHHhcccc
Q 044626 3 AAVVFGDGSESRLYPLTKRRSEGAIPLA---ANYRLVDAVVSNCIN--------SNINKIYALTQFNSTSLNLHLSRAFS 71 (429)
Q Consensus 3 ~avIla~G~gsRl~plt~~~pK~Llpi~---g~~plI~~~i~~l~~--------~gi~~I~Iv~~~~~~~i~~~l~~~~~ 71 (429)
-+|+||||.||||+ .+.||+|+||+ |+ |+|++.++++.. .++..+++...+..+++.+++.+..-
T Consensus 2 a~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~ 77 (266)
T cd04180 2 AVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQ 77 (266)
T ss_pred EEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCC
Confidence 57999999999996 77899999999 99 999999999976 24665655555667889999987431
Q ss_pred CcccCCCCcEEEEecccc---------------ccc-cCcccCcHHHHHHH-----HHHhhcCCCCeEEEEcCceeE-ec
Q 044626 72 GILRGKDGFVEVIAAYQS---------------LED-QDWFQGNADAIRRC-----LWVLEEYPVTEFLILPGHHLY-KM 129 (429)
Q Consensus 72 ~~~~~~~~~v~i~~~~~~---------------~~~-~~~~~Gt~~al~~~-----~~~i~~~~~~~~lvl~gD~i~-~~ 129 (429)
..+. +....|. ... ...|-|.++.+... ++.+.......+.+.+.|++. ..
T Consensus 78 ~~~~-------v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v 150 (266)
T cd04180 78 KNSY-------VITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKV 150 (266)
T ss_pred CCCc-------eEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccc
Confidence 0110 1111110 000 11256777765532 233333344788888888844 44
Q ss_pred -cHHHHHHHHHhcCCceEEEEEeccCCCCCCccEEEEcCCCC--EEEEEecCccccccc---ccCCCCCCCCCCCCCCcc
Q 044626 130 -DYQRLIEAHRNNKADITIVALNAIRDKHPGFGLLRVNPVNQ--VIEFSMKSERETITS---ISGKSSRKSDSVASGNFP 203 (429)
Q Consensus 130 -~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--v~~~~ek~~~~~~~~---~~~~~~~~~~~~~~~~~~ 203 (429)
|. .++-.+...+.++.+-+.+-+..+ ..=|++...++|+ +.++.+-++...... ...+. .....-...
T Consensus 151 ~DP-~~lG~~~~~~~~~~~kvv~K~~~d-~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~----~~~~~~~~~ 224 (266)
T cd04180 151 ADP-LFIGIAIQNRKAINQKVVPKTRNE-ESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKD----IDDAPFFLF 224 (266)
T ss_pred cCH-HHHHHHHHcCCCEEEEEEECCCCC-CeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCC----CCceeeccc
Confidence 33 355666666666655433322111 1224444322243 555555433211000 00000 001123456
Q ss_pred eeeEEEEcHHHHHHHHH
Q 044626 204 SMGIYLINRDTMSRLLK 220 (429)
Q Consensus 204 ~~Giy~~~~~~l~~~l~ 220 (429)
++...+|+-+++++.++
T Consensus 225 n~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 225 NTNNLINFLVEFKDRVD 241 (266)
T ss_pred eEEEEEEEHHHHHHHHH
Confidence 88888888888876654
No 180
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.92 E-value=1e-08 Score=91.31 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=12.3
Q ss_pred eEeCCCCee-cceEEecCcEECCCcEEe
Q 044626 367 VGIGEDTQI-KKAVIDKNARIGKNVLII 393 (429)
Q Consensus 367 ~~ig~~~~i-~~~~ig~~~~ig~~~~i~ 393 (429)
+.||++|.+ .++.++.+++||++|.|+
T Consensus 133 ~~ig~~~~i~~~~~i~~~~~ig~~~~ig 160 (197)
T cd03360 133 CVIGDFVHIAPGVVLSGGVTIGEGAFIG 160 (197)
T ss_pred CEECCCCEECCCCEEcCCcEECCCCEEC
Confidence 344444444 344444444444444443
No 181
>PRK10502 putative acyl transferase; Provisional
Probab=98.92 E-value=6.1e-09 Score=91.85 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=33.7
Q ss_pred CceecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEee---CcEEcCCcEECCCCEEec
Q 044626 284 CPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIK---GTVIGMRTRIGDGAVIED 338 (429)
Q Consensus 284 ~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~---~~~ig~~~~ig~~~~i~~ 338 (429)
+.++.++.|++++.+... .+..||++|.|++ +.+. .++||++|.|++++.|..
T Consensus 52 a~iG~~~~I~~~a~i~~~--~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~ 108 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYP--WKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCT 108 (182)
T ss_pred cccCCCcEEcCCEEEecC--CeEEECCCeEECCCceecccCceEECCCcEECCCeEEEC
Confidence 455555666666655210 2567777777777 6654 577777777777777654
No 182
>PLN02694 serine O-acetyltransferase
Probab=98.91 E-value=4.9e-09 Score=96.92 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=14.5
Q ss_pred CcEEcCCcEECCCCEEecCeEECC
Q 044626 321 GTVIGMRTRIGDGAVIEDSVIMGA 344 (429)
Q Consensus 321 ~~~ig~~~~ig~~~~i~~~~~~~~ 344 (429)
.++||++|+||++|.|..++++++
T Consensus 180 GVVIGe~a~IGdnv~I~~~VtLGg 203 (294)
T PLN02694 180 GVVIGETAVIGNNVSILHHVTLGG 203 (294)
T ss_pred CeEECCCcEECCCCEEeecceeCC
Confidence 466666666666666666665554
No 183
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.91 E-value=5.4e-09 Score=103.54 Aligned_cols=93 Identities=24% Similarity=0.326 Sum_probs=78.8
Q ss_pred cceeCCCCceecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCccccccccccc
Q 044626 277 YNFYDRDCPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQS 355 (429)
Q Consensus 277 ~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~ 355 (429)
..++++++.+ .++.|++++.|.+ .+.++.||++|.|++ |.+++|+|+++|+||++|.|.++++..+
T Consensus 282 ~~~i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~----------- 348 (380)
T PRK05293 282 PQYIAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN----------- 348 (380)
T ss_pred CCEECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC-----------
Confidence 4567777777 4567888888853 467899999999999 9999999999999999999999888776
Q ss_pred CCccccCCcceeEeCCCCeecc-----eEEecCcEECCCcEEe
Q 044626 356 SGKCINHKAIPVGIGEDTQIKK-----AVIDKNARIGKNVLII 393 (429)
Q Consensus 356 ~~~~~~~~~~~~~ig~~~~i~~-----~~ig~~~~ig~~~~i~ 393 (429)
+.|++++.+.+ ++||++++|+++++|+
T Consensus 349 -----------~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 349 -----------AVIGDGVIIGGGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred -----------CEECCCCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence 89999999966 8889998888887763
No 184
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.90 E-value=2.8e-09 Score=85.75 Aligned_cols=103 Identities=18% Similarity=0.261 Sum_probs=81.1
Q ss_pred eCeEECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecC
Q 044626 304 RDSVVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKN 383 (429)
Q Consensus 304 ~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~ 383 (429)
+.++|.++|.|.+ ++.+..+|+.|.++.+++|.++...-. +..--++.+.+.++.|+++|++.-+.||..
T Consensus 38 GKtIv~~g~iIRG-DLAnVr~GryCV~ksrsvIRPp~K~FS---------Kg~affp~hiGdhVFieE~cVVnAAqIgsy 107 (184)
T KOG3121|consen 38 GKTIVEEGVIIRG-DLANVRIGRYCVLKSRSVIRPPMKIFS---------KGPAFFPVHIGDHVFIEEECVVNAAQIGSY 107 (184)
T ss_pred CcEEEeeCcEEec-ccccceEcceEEeccccccCCchHHhc---------CCceeeeeeecceEEEecceEeehhhheee
Confidence 5788999999998 777999999999999999988765432 111124456666788888888888888888
Q ss_pred cEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCCccC
Q 044626 384 ARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADGSII 429 (429)
Q Consensus 384 ~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~vv 429 (429)
+.+|.+++|+ ++|++.+. ++|-+++++++.+++
T Consensus 108 Vh~GknaviG------------rrCVlkdC-c~ild~tVlPpet~v 140 (184)
T KOG3121|consen 108 VHLGKNAVIG------------RRCVLKDC-CRILDDTVLPPETLV 140 (184)
T ss_pred eEeccceeEc------------CceEhhhh-eeccCCcccCccccc
Confidence 8888888887 77888888 788888888877654
No 185
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.90 E-value=2e-08 Score=83.15 Aligned_cols=37 Identities=14% Similarity=0.303 Sum_probs=19.2
Q ss_pred eCeEECCCcEEcceEeeCcEEcCCcEECCCCEEe----cCeEECC
Q 044626 304 RDSVVGDGCIINRCKIKGTVIGMRTRIGDGAVIE----DSVIMGA 344 (429)
Q Consensus 304 ~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~----~~~~~~~ 344 (429)
..+.||++++|.+ .++|..+++||++|.|. .++++++
T Consensus 12 ~~a~IG~GtvI~~----gavV~~~a~IG~~~iIn~~ig~~a~Igh 52 (147)
T cd04649 12 LGAYLAEGTTVMH----EGFVNFNAGTLGNCMVEGRISSGVIVGK 52 (147)
T ss_pred CCCEECCCcEECC----CCEEccCCEECCCeEECCcccCCEEECC
Confidence 3455666666666 44444444444444444 5555554
No 186
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.89 E-value=9e-09 Score=95.22 Aligned_cols=37 Identities=30% Similarity=0.538 Sum_probs=20.4
Q ss_pred CeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECC
Q 044626 305 DSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGA 344 (429)
Q Consensus 305 ~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~ 344 (429)
.+.||+++.|+. + .++||++|+||++|.|.+++++++
T Consensus 147 ~a~IG~g~~I~h~~---givIG~~a~IGdnv~I~~~VtiGg 184 (273)
T PRK11132 147 AAKIGRGIMLDHAT---GIVIGETAVIENDVSILQSVTLGG 184 (273)
T ss_pred cceECCCeEEcCCC---CeEECCCCEECCCCEEcCCcEEec
Confidence 345555555553 2 346666666666666655555553
No 187
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.86 E-value=1.6e-08 Score=93.53 Aligned_cols=16 Identities=25% Similarity=0.661 Sum_probs=7.3
Q ss_pred CcEEcCCcEECCCCEE
Q 044626 321 GTVIGMRTRIGDGAVI 336 (429)
Q Consensus 321 ~~~ig~~~~ig~~~~i 336 (429)
.++||++|.||.+|.|
T Consensus 224 GavIGhds~IG~gasI 239 (341)
T TIGR03536 224 GVMVGKGSDLGGGCST 239 (341)
T ss_pred CCEECCCCEECCCCEE
Confidence 3444444444444444
No 188
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.84 E-value=1e-08 Score=88.59 Aligned_cols=17 Identities=12% Similarity=0.366 Sum_probs=9.0
Q ss_pred ceEEecCcEECCCcEEe
Q 044626 377 KAVIDKNARIGKNVLII 393 (429)
Q Consensus 377 ~~~ig~~~~ig~~~~i~ 393 (429)
.++||++|.||+++.|.
T Consensus 113 ~~~Ig~~v~Ig~~a~I~ 129 (162)
T TIGR01172 113 HPTVGEGVMIGAGAKVL 129 (162)
T ss_pred CCEECCCcEEcCCCEEE
Confidence 34555555555555554
No 189
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.82 E-value=5.1e-08 Score=77.07 Aligned_cols=65 Identities=20% Similarity=0.372 Sum_probs=40.2
Q ss_pred CeEECCCcEEcc-eEee-CcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEec
Q 044626 305 DSVVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDK 382 (429)
Q Consensus 305 ~~~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~ 382 (429)
.+.|++++.|++ +.+. ++.||++|.|++++.|.+.+.++.+ +.||. .+.+|+|++
T Consensus 11 ~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~---------------------~~Ig~--~i~~svi~~ 67 (101)
T cd05635 11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPT---------------------CKIGG--EVEDSIIEG 67 (101)
T ss_pred CEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCC---------------------CEECC--EECccEEcC
Confidence 456666666666 4442 6777777777777777765555542 55543 355666666
Q ss_pred CcEECCCcEE
Q 044626 383 NARIGKNVLI 392 (429)
Q Consensus 383 ~~~ig~~~~i 392 (429)
++.++.++.|
T Consensus 68 ~~~i~~~~~l 77 (101)
T cd05635 68 YSNKQHDGFL 77 (101)
T ss_pred CCEecCcCEE
Confidence 6666666555
No 190
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.81 E-value=4.4e-07 Score=90.81 Aligned_cols=203 Identities=18% Similarity=0.176 Sum_probs=120.6
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccC---CcchhHHHHHHhhHhc--------------CCCeEEEEee-cChhHH
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLA---ANYRLVDAVVSNCINS--------------NINKIYALTQ-FNSTSL 62 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~---g~~plI~~~i~~l~~~--------------gi~~I~Iv~~-~~~~~i 62 (429)
++.+||||||.||||+ ...||+|+||+ |+ |++++.++++... .+ .++|.++ +..+.+
T Consensus 106 kvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~I-p~~IMTS~~t~~~t 180 (482)
T PTZ00339 106 EVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTI-YILVLTSSFNHDQT 180 (482)
T ss_pred CeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCC-CEEEEeCcchHHHH
Confidence 5789999999999997 67899999994 88 9999999999864 13 3455554 567889
Q ss_pred HHHHhccccCcccCCCCcEEEEeccccc------c------cc-----CcccCcHHHHHHH-----HHHhhcCCCCeEEE
Q 044626 63 NLHLSRAFSGILRGKDGFVEVIAAYQSL------E------DQ-----DWFQGNADAIRRC-----LWVLEEYPVTEFLI 120 (429)
Q Consensus 63 ~~~l~~~~~~~~~~~~~~v~i~~~~~~~------~------~~-----~~~~Gt~~al~~~-----~~~i~~~~~~~~lv 120 (429)
.+++.+... +|++.. .+....|.. . ++ ..|.|.++..... ++.+.....+.+.+
T Consensus 181 ~~~f~~~~~-FGl~~~---~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v 256 (482)
T PTZ00339 181 RQFLEENNF-FGLDKE---QVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQV 256 (482)
T ss_pred HHHHHhccc-cCCCcc---cEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEE
Confidence 999976432 444321 111112210 0 00 1257887665543 23444444579999
Q ss_pred EcCceeE-eccHHHHHHHHHhcCC-ceEEEEEeccCCCCCCccEEEE-cCCCCEEEEEecCcccccccccCCCCCCCCCC
Q 044626 121 LPGHHLY-KMDYQRLIEAHRNNKA-DITIVALNAIRDKHPGFGLLRV-NPVNQVIEFSMKSERETITSISGKSSRKSDSV 197 (429)
Q Consensus 121 l~gD~i~-~~~l~~~~~~~~~~~~-~~ti~~~~~~~~~~~~~g~v~~-d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~ 197 (429)
.+.|++. ...--.++-++...++ ++.-.+.+.. .+ ..-|++.. +..-.+.++.|-+...... .+ .....
T Consensus 257 ~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~-~~-EkvG~~~~~~g~~~vvEYsEi~~~~~~~---~~---~~~g~ 328 (482)
T PTZ00339 257 ISIDNILAKVLDPEFIGLASSFPAHDVLNKCVKRE-DD-ESVGVFCLKDYEWQVVEYTEINERILNN---DE---LLTGE 328 (482)
T ss_pred EecCcccccccCHHHhHHHHHCCchhheeeeecCC-CC-CceeEEEEeCCcccEEEEeccChhhhhc---cc---ccCCe
Confidence 9999964 2322346777777676 5544333221 11 23355543 3222677787754432110 00 00000
Q ss_pred CCCCcceeeEEEEcHHHHHHHHH
Q 044626 198 ASGNFPSMGIYLINRDTMSRLLK 220 (429)
Q Consensus 198 ~~~~~~~~Giy~~~~~~l~~~l~ 220 (429)
+.-...+...++|+.++|+++.+
T Consensus 329 l~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 329 LAFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred ecccccceEEEEEEHHHHHHHhh
Confidence 12244578899999999987654
No 191
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.77 E-value=5.5e-08 Score=89.99 Aligned_cols=12 Identities=0% Similarity=-0.064 Sum_probs=5.5
Q ss_pred cCcHHHHHHHHH
Q 044626 97 QGNADAIRRCLW 108 (429)
Q Consensus 97 ~Gt~~al~~~~~ 108 (429)
+.+.+.+..+..
T Consensus 27 ~~~~~~~~~~~~ 38 (341)
T TIGR03536 27 LNPSAELVAAVA 38 (341)
T ss_pred CChhHHHHHHHH
Confidence 344445554443
No 192
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.76 E-value=5.2e-08 Score=86.78 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=36.2
Q ss_pred ceecCCccCCCeEE-eeeEeeCeEECCCcEEcc-eEee---CcEEcCCcEECCCCEEec
Q 044626 285 PVYTMPRCLPPTMI-REAVIRDSVVGDGCIINR-CKIK---GTVIGMRTRIGDGAVIED 338 (429)
Q Consensus 285 ~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~i~~-~~v~---~~~ig~~~~ig~~~~i~~ 338 (429)
.+++++.|.|++.+ .+ .++.||+++.|+. +.+. ++.||++|.|+++|.|..
T Consensus 57 ~ig~~~~I~~~~~~~~g---~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~ 112 (203)
T PRK09527 57 TVGENAWVEPPVYFSYG---SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSV 112 (203)
T ss_pred hcCCCcEEcCCEEEeeC---CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEe
Confidence 35566677787776 22 4678899988888 6663 477888888888877753
No 193
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.76 E-value=3.9e-08 Score=88.63 Aligned_cols=107 Identities=15% Similarity=0.214 Sum_probs=61.6
Q ss_pred eeCCCCceecCCccCCCeEE-eeeEee-CeEECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccC
Q 044626 279 FYDRDCPVYTMPRCLPPTMI-REAVIR-DSVVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSS 356 (429)
Q Consensus 279 ~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~ 356 (429)
.+.|.+.+-.+++|.+++++ .++.|. ++.++++|.|+. +.++|.++.||+||.|+.++.+.+.
T Consensus 110 RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~----~as~G~~a~VGkn~higgGa~I~GV----------- 174 (271)
T COG2171 110 RIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDG----RASVGSCAQVGKNSHIGGGASIGGV----------- 174 (271)
T ss_pred eecCccEEeeccEECCCcEEcccceEEECcccCcceEEee----eeeeeccEEECCCcccCCcceEeEE-----------
Confidence 34556666666666666666 444443 677777777777 4444444444444444444333320
Q ss_pred CccccCCcceeEeCCCCee-cceEEecCcEECCCcEEecCCCCCCCe
Q 044626 357 GKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLIINKDGVQEGD 402 (429)
Q Consensus 357 ~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~ 402 (429)
+---.+.|+.||+||.| .+|.+..++.+|++|+|..+..+..++
T Consensus 175 --Lep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~t 219 (271)
T COG2171 175 --LEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDT 219 (271)
T ss_pred --ecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCc
Confidence 00012334778888888 677777777777777777444443333
No 194
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.75 E-value=3.8e-08 Score=88.73 Aligned_cols=101 Identities=23% Similarity=0.401 Sum_probs=63.0
Q ss_pred CCccCCCeEEeeeEeeCeEECCCcEEcc-eEee-CcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcce
Q 044626 289 MPRCLPPTMIREAVIRDSVVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIP 366 (429)
Q Consensus 289 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (429)
.++|.|++.+. ..+.||+|+++.+ +.|. ++.+++.+.|.-+++++.|+.++..
T Consensus 108 g~RI~p~a~VR----~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn--------------------- 162 (271)
T COG2171 108 GVRIVPGAIVR----LGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKN--------------------- 162 (271)
T ss_pred ceeecCccEEe----eccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCC---------------------
Confidence 35666766664 4567777777777 5553 6777777777777766666666642
Q ss_pred eEeCCCCeecceE---------EecCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCC
Q 044626 367 VGIGEDTQIKKAV---------IDKNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGA 421 (429)
Q Consensus 367 ~~ig~~~~i~~~~---------ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 421 (429)
+.||-++.|.+.. |++||.||+++.+. ++..+|++|+|++| +.|.+++
T Consensus 163 ~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~v------eGV~vGdg~VV~aG-v~I~~~t 219 (271)
T COG2171 163 SHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVV------EGVIVGDGCVVAAG-VFITQDT 219 (271)
T ss_pred cccCCcceEeEEecCCCCCCeEECCccEeccccceE------eeeEeCCCcEEecc-eEEeCCc
Confidence 5666666664433 88888888887666 33444455555555 4444443
No 195
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.74 E-value=5e-08 Score=78.39 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=23.2
Q ss_pred eEECCCcEEcc-eEee---CcEEcCCcEECCCCEEecC
Q 044626 306 SVVGDGCIINR-CKIK---GTVIGMRTRIGDGAVIEDS 339 (429)
Q Consensus 306 ~~ig~~~~i~~-~~v~---~~~ig~~~~ig~~~~i~~~ 339 (429)
+.||++|.|++ +.+. +++||++|.|+++|.|.++
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECC
Confidence 45666666666 5553 4777777777777777765
No 196
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.73 E-value=1e-07 Score=84.90 Aligned_cols=16 Identities=19% Similarity=0.029 Sum_probs=7.5
Q ss_pred CcEEcCCcEECCCCEE
Q 044626 321 GTVIGMRTRIGDGAVI 336 (429)
Q Consensus 321 ~~~ig~~~~ig~~~~i 336 (429)
++.||++|.|+.+|+|
T Consensus 75 ni~IG~~v~In~~~~I 90 (203)
T PRK09527 75 NIHIGRNFYANFNLTI 90 (203)
T ss_pred CcEEcCCcEECCCcEE
Confidence 3444444444444444
No 197
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.73 E-value=1.1e-07 Score=84.49 Aligned_cols=54 Identities=19% Similarity=0.075 Sum_probs=33.2
Q ss_pred eecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEee---CcEEcCCcEECCCCEEecC
Q 044626 286 VYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIK---GTVIGMRTRIGDGAVIEDS 339 (429)
Q Consensus 286 ~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~---~~~ig~~~~ig~~~~i~~~ 339 (429)
++.++.+..++.+.--......||++|.|++ +.+. +++||++|.|++++.|.+.
T Consensus 46 iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~ 103 (192)
T PRK09677 46 FGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDH 103 (192)
T ss_pred ECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECC
Confidence 4444444444444100013567888888888 6664 5788888888888777653
No 198
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.73 E-value=1.1e-07 Score=87.53 Aligned_cols=14 Identities=7% Similarity=0.147 Sum_probs=6.4
Q ss_pred EEEcCCCEeCCCcc
Q 044626 415 VVIIHGAEIADGSI 428 (429)
Q Consensus 415 ~~i~~~~~i~~~~v 428 (429)
+.||++|+|++|++
T Consensus 242 I~IGd~~VVGAGaV 255 (319)
T TIGR03535 242 ISLGDDCVVEAGLY 255 (319)
T ss_pred eEECCCCEECCCCE
Confidence 34444444444443
No 199
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.73 E-value=6.5e-07 Score=78.07 Aligned_cols=217 Identities=13% Similarity=0.111 Sum_probs=131.5
Q ss_pred EEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcC-CCeEEEEeecChhHHHHHHhccccCcccCCCCcE
Q 044626 3 AAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSN-INKIYALTQFNSTSLNLHLSRAFSGILRGKDGFV 81 (429)
Q Consensus 3 ~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v 81 (429)
-|||+|.|.++|.. -|-+.+++|+ |||.|+|+.+.+++ |++|+|-+ .++.+.+.-.+. |.+. .
T Consensus 5 iAiIpAR~gSKgI~------~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~y----gak~---~ 68 (228)
T COG1083 5 IAIIPARGGSKGIK------NKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKKY----GAKV---F 68 (228)
T ss_pred EEEEeccCCCCcCC------ccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHHHHh----Cccc---c
Confidence 49999999999998 7999999999 99999999999998 78887755 455555544442 2211 0
Q ss_pred EEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-e-EeccHHHHHHHHHhcCCceEEEEEeccCCCCCC
Q 044626 82 EVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-L-YKMDYQRLIEAHRNNKADITIVALNAIRDKHPG 159 (429)
Q Consensus 82 ~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i-~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~ 159 (429)
-..+.+--.+. ..+-+++.++.+..... .+.++++++-. + ...+++.+++.+.+++.+-.+.+.+... ..
T Consensus 69 ~~Rp~~LA~D~----ast~~~~lh~le~~~~~-~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~---~p 140 (228)
T COG1083 69 LKRPKELASDR----ASTIDAALHALESFNID-EDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEH---HP 140 (228)
T ss_pred ccCChhhccCc----hhHHHHHHHHHHHhccc-cCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeeccc---ch
Confidence 01111110011 23445667777666543 25577777666 4 4778999999998888776666555432 11
Q ss_pred ccEEEEcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHhhCCCCcccccccchhccc
Q 044626 160 FGLLRVNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKEYLPEATDLGSEVIPAAIS 239 (429)
Q Consensus 160 ~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~d~l~~l~~ 239 (429)
|-.... .+|.+..+-+.+.... +.+.+ ...+..+.-+|+++.+.|.+ + ..-|.
T Consensus 141 ~k~f~~-~~~~~~~~~~~~~~~~---------rrQ~L-pk~Y~~NgaiYi~~~~~l~e---~----~~~f~--------- 193 (228)
T COG1083 141 YKAFSL-NNGEVKPVNEDPDFET---------RRQDL-PKAYRENGAIYINKKDALLE---N----DCFFI--------- 193 (228)
T ss_pred HHHHHh-cCCceeecccCCcccc---------ccccc-hhhhhhcCcEEEehHHHHhh---c----Cceec---------
Confidence 111112 2466666666553221 00111 12344567788888887742 1 11121
Q ss_pred CCceEEEEEe-cceEEecCCHHHHHHHhHhhhcc
Q 044626 240 IGMKVEAYLF-DGYWEDMRSIEAFYHANMECIKR 272 (429)
Q Consensus 240 ~g~~i~~~~~-~~~~~~i~t~~~~~~an~~~l~~ 272 (429)
.+...|.. +....||++..|+..++.....+
T Consensus 194 --~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~~ 225 (228)
T COG1083 194 --PNTILYEMPEDESIDIDTELDLEIAENLIFLK 225 (228)
T ss_pred --CCceEEEcCcccccccccHHhHHHHHHHhhhh
Confidence 12333333 34578999999999998876643
No 200
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.72 E-value=8.6e-08 Score=83.56 Aligned_cols=48 Identities=25% Similarity=0.258 Sum_probs=31.2
Q ss_pred CCccCCCeEE-eeeEeeCeEECCCcEEcc-eEee---CcEEcCCcEECCCCEEecC
Q 044626 289 MPRCLPPTMI-REAVIRDSVVGDGCIINR-CKIK---GTVIGMRTRIGDGAVIEDS 339 (429)
Q Consensus 289 ~~~i~~~~~i-~~~~i~~~~ig~~~~i~~-~~v~---~~~ig~~~~ig~~~~i~~~ 339 (429)
++.+.+++.+ .+ .++.||+++.|+. +.+. +.+||++|.|+++|.|..+
T Consensus 48 ~~~i~~~~~~~~~---~~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~ 100 (169)
T cd03357 48 NVYIEPPFHCDYG---YNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTA 100 (169)
T ss_pred CCEEcCCEEEEeC---CcCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeC
Confidence 3444455444 11 3567888888877 6553 5788888888888887643
No 201
>PLN02357 serine acetyltransferase
Probab=98.71 E-value=6.8e-08 Score=91.97 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=18.1
Q ss_pred eEeCCCCee-cceEEecCcEECCCcEEe
Q 044626 367 VGIGEDTQI-KKAVIDKNARIGKNVLII 393 (429)
Q Consensus 367 ~~ig~~~~i-~~~~ig~~~~ig~~~~i~ 393 (429)
|.||.++.| .++.||++++||++++|.
T Consensus 285 V~IGagA~IlggV~IGdga~IGAgSVV~ 312 (360)
T PLN02357 285 VLIGAGTCILGNITIGEGAKIGAGSVVL 312 (360)
T ss_pred eEECCceEEECCeEECCCCEECCCCEEC
Confidence 566666665 566677777777777665
No 202
>PRK10502 putative acyl transferase; Provisional
Probab=98.69 E-value=1.5e-07 Score=83.05 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=19.7
Q ss_pred eEECCCcEEcc-eEee---CcEEcCCcEECCCCEEec
Q 044626 306 SVVGDGCIINR-CKIK---GTVIGMRTRIGDGAVIED 338 (429)
Q Consensus 306 ~~ig~~~~i~~-~~v~---~~~ig~~~~ig~~~~i~~ 338 (429)
+.||+++.|++ +.+. ++.||++|.|++++.|.+
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~ 88 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYN 88 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecc
Confidence 35555555555 5543 366677777777766653
No 203
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.69 E-value=3.3e-08 Score=85.12 Aligned_cols=27 Identities=33% Similarity=0.544 Sum_probs=19.3
Q ss_pred eEeCCCCee-cceEEecCcEECCCcEEe
Q 044626 367 VGIGEDTQI-KKAVIDKNARIGKNVLII 393 (429)
Q Consensus 367 ~~ig~~~~i-~~~~ig~~~~ig~~~~i~ 393 (429)
+.||.++.| .+-.||+|+.||+|+++.
T Consensus 126 V~IGagAkILG~I~IGd~akIGA~sVVl 153 (194)
T COG1045 126 VYIGAGAKILGNIEIGDNAKIGAGSVVL 153 (194)
T ss_pred eEECCCCEEEcceEECCCCEECCCceEc
Confidence 667777766 566677777777777775
No 204
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.68 E-value=1.1e-07 Score=71.13 Aligned_cols=34 Identities=38% Similarity=0.619 Sum_probs=21.2
Q ss_pred EECCCcEEcc-eEee-CcEEcCCcEECCCCEEecCe
Q 044626 307 VVGDGCIINR-CKIK-GTVIGMRTRIGDGAVIEDSV 340 (429)
Q Consensus 307 ~ig~~~~i~~-~~v~-~~~ig~~~~ig~~~~i~~~~ 340 (429)
.||++|.|++ +.+. ++.||++|.|++++.|.++.
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ 37 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAAT 37 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEecc
Confidence 4566666666 4443 47777777777777666553
No 205
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=8.3e-08 Score=93.71 Aligned_cols=81 Identities=30% Similarity=0.383 Sum_probs=64.0
Q ss_pred CCCCceecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCcc
Q 044626 281 DRDCPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKC 359 (429)
Q Consensus 281 ~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 359 (429)
...+.+++++.|++++.+. .++.||++|.|+. +.+++|+|.++|+|++++.|.+|++..+
T Consensus 259 ~gp~~ig~~~~i~~~~~i~----~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~--------------- 319 (358)
T COG1208 259 IGPVVIGPGAKIGPGALIG----PYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGEN--------------- 319 (358)
T ss_pred eCCEEECCCCEECCCCEEC----CCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCC---------------
Confidence 3344455555555555553 5789999999999 9999999999999999999999999987
Q ss_pred ccCCcceeEeCCCCeecceEEecCcEECCCcEEe
Q 044626 360 INHKAIPVGIGEDTQIKKAVIDKNARIGKNVLII 393 (429)
Q Consensus 360 ~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~ 393 (429)
|.||+++ . +|+ +.+|.++.+.
T Consensus 320 -------~~ig~~~-~----i~d-~~~g~~~~i~ 340 (358)
T COG1208 320 -------CKIGASL-I----IGD-VVIGINSEIL 340 (358)
T ss_pred -------cEECCce-e----ecc-eEecCceEEc
Confidence 8899822 2 888 8888888887
No 206
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.65 E-value=8.1e-08 Score=82.78 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=14.6
Q ss_pred EEecCcEECCCcEEecCCCCCCCeeecCCeEEccC
Q 044626 379 VIDKNARIGKNVLIINKDGVQEGDREANGYIISEG 413 (429)
Q Consensus 379 ~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~ 413 (429)
.||++|.||+|+.|. +.-+||+++.||++
T Consensus 121 tIg~~V~IGagAkIL------G~I~IGd~akIGA~ 149 (194)
T COG1045 121 TIGNGVYIGAGAKIL------GNIEIGDNAKIGAG 149 (194)
T ss_pred ccCCCeEECCCCEEE------cceEECCCCEECCC
Confidence 455555555555555 33444444444444
No 207
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.64 E-value=1.4e-07 Score=92.48 Aligned_cols=67 Identities=31% Similarity=0.381 Sum_probs=52.0
Q ss_pred eCeEECCCcEEcceEe-eCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCC-CeecceEEe
Q 044626 304 RDSVVGDGCIINRCKI-KGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGED-TQIKKAVID 381 (429)
Q Consensus 304 ~~~~ig~~~~i~~~~v-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~-~~i~~~~ig 381 (429)
+++.||++|.|+.+.+ .+|+||++|+|+ ++.|.+++++.+ +.|+.+ +.+.++++|
T Consensus 270 ~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~----------------------~~i~~~~~~~~~~ii~ 326 (353)
T TIGR01208 270 GPAVIGEDCIIENSYIGPYTSIGEGVVIR-DAEVEHSIVLDE----------------------SVIEGVQARIVDSVIG 326 (353)
T ss_pred CCcEECCCCEEcCcEECCCCEECCCCEEe-eeEEEeeEEcCC----------------------CEEcCCcceeecCEEc
Confidence 4567777777776334 488888888887 788888887776 788877 478888888
Q ss_pred cCcEECCCcEEe
Q 044626 382 KNARIGKNVLII 393 (429)
Q Consensus 382 ~~~~ig~~~~i~ 393 (429)
++|+|++++.+.
T Consensus 327 ~~~~i~~~~~~~ 338 (353)
T TIGR01208 327 KKVRIKGNRRRP 338 (353)
T ss_pred CCCEECCCcccc
Confidence 888888888775
No 208
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.64 E-value=3.7e-07 Score=79.58 Aligned_cols=10 Identities=30% Similarity=0.704 Sum_probs=4.2
Q ss_pred EECCCcEEcc
Q 044626 307 VVGDGCIINR 316 (429)
Q Consensus 307 ~ig~~~~i~~ 316 (429)
.||++|.|++
T Consensus 84 ~IG~~v~Ig~ 93 (169)
T cd03357 84 TIGDNVLIGP 93 (169)
T ss_pred EECCCCEECC
Confidence 4444444444
No 209
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.62 E-value=8.6e-08 Score=77.93 Aligned_cols=49 Identities=24% Similarity=0.432 Sum_probs=38.3
Q ss_pred CccCCCeEE-eeeEe-eCeEECCCcEEcc-eEee----CcEEcCCcEECCCCEEec
Q 044626 290 PRCLPPTMI-REAVI-RDSVVGDGCIINR-CKIK----GTVIGMRTRIGDGAVIED 338 (429)
Q Consensus 290 ~~i~~~~~i-~~~~i-~~~~ig~~~~i~~-~~v~----~~~ig~~~~ig~~~~i~~ 338 (429)
+.|.|.+++ ..+.+ +++.|+++|+|++ +.+. ..+||+|+.|.++++|.+
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n 64 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRN 64 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHh
Confidence 345566666 34445 6899999999999 7773 699999999999998865
No 210
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.60 E-value=2.2e-07 Score=82.62 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=30.2
Q ss_pred ccCCCeEE-eeeEeeCeEECCCcEEcc-eEee-----CcEEcCCcEECCCCEEe--cCeEECC
Q 044626 291 RCLPPTMI-REAVIRDSVVGDGCIINR-CKIK-----GTVIGMRTRIGDGAVIE--DSVIMGA 344 (429)
Q Consensus 291 ~i~~~~~i-~~~~i~~~~ig~~~~i~~-~~v~-----~~~ig~~~~ig~~~~i~--~~~~~~~ 344 (429)
.+.+|..+ .+. +..+|+++.++. +.+. ...||++|.|++++.|. .++.+++
T Consensus 31 ~i~~pf~~~~~~---~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~ 90 (192)
T PRK09677 31 IIRFPFYIRNDG---SINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGR 90 (192)
T ss_pred EEcCCEEEcCCC---eEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECC
Confidence 45566666 232 234555555554 4431 57888888888888876 3455554
No 211
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.60 E-value=1.5e-07 Score=87.14 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=18.0
Q ss_pred eEeCCCCee-cceEEecCcEECCCcEEe
Q 044626 367 VGIGEDTQI-KKAVIDKNARIGKNVLII 393 (429)
Q Consensus 367 ~~ig~~~~i-~~~~ig~~~~ig~~~~i~ 393 (429)
|.||.++.| .++.||++|.||+++++.
T Consensus 200 V~IGaga~Ilggv~IG~~a~IGAgSvV~ 227 (273)
T PRK11132 200 VMIGAGAKILGNIEVGRGAKIGAGSVVL 227 (273)
T ss_pred cEEcCCCEEcCCCEECCCCEECCCCEEC
Confidence 566666666 566666677776666665
No 212
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.60 E-value=2.9e-07 Score=80.93 Aligned_cols=47 Identities=17% Similarity=0.163 Sum_probs=29.0
Q ss_pred CCccCCCeEE-eeeEeeCeEECCCcEEcc-eEeeC---cEEcCCcEECCCCEEec
Q 044626 289 MPRCLPPTMI-REAVIRDSVVGDGCIINR-CKIKG---TVIGMRTRIGDGAVIED 338 (429)
Q Consensus 289 ~~~i~~~~~i-~~~~i~~~~ig~~~~i~~-~~v~~---~~ig~~~~ig~~~~i~~ 338 (429)
++.|.|+... .+ .++.||++++|+. +.+.+ .+||++|.|+++|.|..
T Consensus 59 ~~~i~~~~~~~~g---~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t 110 (183)
T PRK10092 59 EAYIEPTFRCDYG---YNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYT 110 (183)
T ss_pred CEEEeCCEEEeec---CCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEc
Confidence 3445565543 11 4677888888877 55432 36777777777777654
No 213
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.60 E-value=1.7e-07 Score=92.19 Aligned_cols=81 Identities=21% Similarity=0.321 Sum_probs=63.6
Q ss_pred EECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcE
Q 044626 307 VVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNAR 385 (429)
Q Consensus 307 ~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ 385 (429)
.+-..++|++ +.+.+|+||++|+|+.+ .|.+++++.+ |.||++|+|.+|+|++++.
T Consensus 279 ~~~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~----------------------~~I~~~~~i~~sii~~~~~ 335 (361)
T TIGR02091 279 FLPPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIR----------------------VRIGSGSTVEDSVIMGDVG 335 (361)
T ss_pred CCCCceEecCCCEEECCEECCCCEECCC-EEEccEECCC----------------------CEECCCCEEeeeEEeCCCE
Confidence 3445667777 67778999999999986 8888887776 8999999999999999999
Q ss_pred ECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeC
Q 044626 386 IGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIA 424 (429)
Q Consensus 386 ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~ 424 (429)
||++|.+. +++++++ +.|+.++.|+
T Consensus 336 v~~~~~l~-------------~~ivg~~-~~i~~~~~i~ 360 (361)
T TIGR02091 336 IGRGAVIR-------------NAIIDKN-VRIGEGVVIG 360 (361)
T ss_pred ECCCCEEe-------------eeEECCC-CEECCCCEeC
Confidence 99999983 4555555 5555555553
No 214
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.60 E-value=2.4e-07 Score=69.31 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=12.2
Q ss_pred EEcCCcEECCCCEEecCeEECC
Q 044626 323 VIGMRTRIGDGAVIEDSVIMGA 344 (429)
Q Consensus 323 ~ig~~~~ig~~~~i~~~~~~~~ 344 (429)
+||+++.|++++.|.+.+.++.
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~ 23 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGD 23 (78)
T ss_pred EECCCeEECCCCEEeCcEEECC
Confidence 4566666666666555444443
No 215
>PLN02739 serine acetyltransferase
Probab=98.59 E-value=1.8e-07 Score=88.31 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=11.9
Q ss_pred eEeCCCCee-cceEEecCcEECCCcEE
Q 044626 367 VGIGEDTQI-KKAVIDKNARIGKNVLI 392 (429)
Q Consensus 367 ~~ig~~~~i-~~~~ig~~~~ig~~~~i 392 (429)
|.||.++.| .++.||++|.||+|++|
T Consensus 264 V~IGagA~IlG~V~IGd~aiIGAGSVV 290 (355)
T PLN02739 264 ALLGACVTILGNISIGAGAMVAAGSLV 290 (355)
T ss_pred CEEcCCCEEeCCeEECCCCEECCCCEE
Confidence 344444444 34444444444444444
No 216
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.58 E-value=1.9e-07 Score=92.12 Aligned_cols=60 Identities=20% Similarity=0.345 Sum_probs=50.2
Q ss_pred CCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEECC
Q 044626 310 DGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGK 388 (429)
Q Consensus 310 ~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~ 388 (429)
..++|++ +.+++|+||++|+|+ +.|.+|+++.+ |.|+++|.|.+|+|+++|.|++
T Consensus 277 ~p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~----------------------~~I~~~~~i~~sii~~~~~I~~ 332 (369)
T TIGR02092 277 PPTYYAENSKVENSLVANGCIIE--GKVENSILSRG----------------------VHVGKDALIKNCIIMQRTVIGE 332 (369)
T ss_pred CCcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCC----------------------CEECCCCEEEeeEEeCCCEECC
Confidence 4455555 555589999999997 46889988887 8999999999999999999999
Q ss_pred CcEEe
Q 044626 389 NVLII 393 (429)
Q Consensus 389 ~~~i~ 393 (429)
++.+.
T Consensus 333 ~~~i~ 337 (369)
T TIGR02092 333 GAHLE 337 (369)
T ss_pred CCEEE
Confidence 99994
No 217
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.58 E-value=3.9e-07 Score=72.19 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=8.5
Q ss_pred cceEEecCcEECCCcEEe
Q 044626 376 KKAVIDKNARIGKNVLII 393 (429)
Q Consensus 376 ~~~~ig~~~~ig~~~~i~ 393 (429)
..++||++|.|+.++.+.
T Consensus 53 ~~~~Ig~~~~Ig~~~~i~ 70 (101)
T cd03354 53 RHPTIGDNVVIGAGAKIL 70 (101)
T ss_pred CCCEECCCcEEcCCCEEE
Confidence 444444444444444443
No 218
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.57 E-value=1.6e-07 Score=94.16 Aligned_cols=53 Identities=17% Similarity=0.321 Sum_probs=48.8
Q ss_pred EeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEe
Q 044626 318 KIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLII 393 (429)
Q Consensus 318 ~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~ 393 (429)
.+.+|+||++|.| ++|.|.+|+++.+ |.||++|.|.+|+|+++|.||++|.|.
T Consensus 324 ~~~~s~i~~~~~i-~~~~i~~svi~~~----------------------~~I~~~~~i~~svi~~~~~I~~~~~i~ 376 (425)
T PRK00725 324 MAINSLVSGGCII-SGAVVRRSVLFSR----------------------VRVNSFSNVEDSVLLPDVNVGRSCRLR 376 (425)
T ss_pred eEEeCEEcCCcEE-cCccccCCEECCC----------------------CEECCCCEEeeeEEcCCCEECCCCEEe
Confidence 4568999999999 7999999888876 999999999999999999999999994
No 219
>PRK10191 putative acyl transferase; Provisional
Probab=98.55 E-value=7.2e-07 Score=75.19 Aligned_cols=27 Identities=22% Similarity=0.494 Sum_probs=13.0
Q ss_pred eEeCCCCee-cceEEecCcEECCCcEEe
Q 044626 367 VGIGEDTQI-KKAVIDKNARIGKNVLII 393 (429)
Q Consensus 367 ~~ig~~~~i-~~~~ig~~~~ig~~~~i~ 393 (429)
+.||.++.+ .++.||++|.||+++++.
T Consensus 99 ~~Ig~~~~I~~~v~IG~~~~Igags~V~ 126 (146)
T PRK10191 99 VELGANVIILGDITIGNNVTVGAGSVVL 126 (146)
T ss_pred cEEcCCCEEeCCCEECCCCEECCCCEEC
Confidence 444444444 344455555555555543
No 220
>PLN02694 serine O-acetyltransferase
Probab=98.54 E-value=3.2e-07 Score=85.01 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=22.4
Q ss_pred eEeCCCCee-cceEEecCcEECCCcEEe
Q 044626 367 VGIGEDTQI-KKAVIDKNARIGKNVLII 393 (429)
Q Consensus 367 ~~ig~~~~i-~~~~ig~~~~ig~~~~i~ 393 (429)
|.||.++.| .++.||++|+||+++++.
T Consensus 219 V~IGagA~Ilggi~IGd~a~IGAgSVV~ 246 (294)
T PLN02694 219 VLIGAGATILGNVKIGEGAKIGAGSVVL 246 (294)
T ss_pred eEECCeeEECCCCEECCCCEECCCCEEC
Confidence 778888887 788888888888888886
No 221
>PRK10191 putative acyl transferase; Provisional
Probab=98.54 E-value=3.7e-07 Score=76.96 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=13.2
Q ss_pred EeCCCCee-cceEEecCcEECCCcEEe
Q 044626 368 GIGEDTQI-KKAVIDKNARIGKNVLII 393 (429)
Q Consensus 368 ~ig~~~~i-~~~~ig~~~~ig~~~~i~ 393 (429)
.||++|.| .++.+..+++||+++.++
T Consensus 94 ~IGd~~~Ig~~~~I~~~v~IG~~~~Ig 120 (146)
T PRK10191 94 HIGNGVELGANVIILGDITIGNNVTVG 120 (146)
T ss_pred EECCCcEEcCCCEEeCCCEECCCCEEC
Confidence 45555555 344555555555555554
No 222
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.52 E-value=4.2e-07 Score=91.57 Aligned_cols=82 Identities=26% Similarity=0.287 Sum_probs=61.5
Q ss_pred CccCCCeEEeeeEeeCeEECCCcEEcc-eEeeCcEEcC----------------C---cEECCCCEEecCeEECCccccc
Q 044626 290 PRCLPPTMIREAVIRDSVVGDGCIINR-CKIKGTVIGM----------------R---TRIGDGAVIEDSVIMGADFYQQ 349 (429)
Q Consensus 290 ~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~~~~ig~----------------~---~~ig~~~~i~~~~~~~~~~~~~ 349 (429)
+.|++++.|.++.|.+++|+++|.|+. |.|.++++.. + ++||++|.|.++++..+
T Consensus 316 s~I~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~----- 390 (436)
T PLN02241 316 SIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKN----- 390 (436)
T ss_pred eEEcCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCC-----
Confidence 678888888777788999999999999 9998877744 3 38999999987665554
Q ss_pred ccccccCCccccCCcceeEeCCCCeec-ceEEecCcEECCCcEEe
Q 044626 350 GEDIQSSGKCINHKAIPVGIGEDTQIK-KAVIDKNARIGKNVLII 393 (429)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~ig~~~~ig~~~~i~ 393 (429)
+.||+++.+. ..-+.+..++|++|.++
T Consensus 391 -----------------v~Ig~~~~i~~~~~~~~~~~~~~~~~~~ 418 (436)
T PLN02241 391 -----------------ARIGKNVVIINKDGVQEADREEEGYYIR 418 (436)
T ss_pred -----------------CEECCCcEEecccccCCccccccccEEe
Confidence 7888888874 33355555555555555
No 223
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.52 E-value=1.3e-06 Score=69.96 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=22.6
Q ss_pred CeEECCCcEEcc-eEee---CcEEcCCcEECCCCEEec
Q 044626 305 DSVVGDGCIINR-CKIK---GTVIGMRTRIGDGAVIED 338 (429)
Q Consensus 305 ~~~ig~~~~i~~-~~v~---~~~ig~~~~ig~~~~i~~ 338 (429)
+..||++|.|++ +.+. .++||++|.|++++.|..
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~ 40 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCT 40 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeec
Confidence 346666666666 5553 477778888877777753
No 224
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.51 E-value=4.1e-07 Score=91.38 Aligned_cols=99 Identities=17% Similarity=0.154 Sum_probs=72.7
Q ss_pred EECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEec----
Q 044626 307 VVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDK---- 382 (429)
Q Consensus 307 ~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~---- 382 (429)
.+.+.+.+..+.++++.||++|.| +++.|.+|+++.+ |.||++|.|.+|+|..
T Consensus 294 ~~~~~a~~~~~~~~~~~ig~~~~i-~~~~i~~svi~~~----------------------~~Ig~~~~i~~svi~~~~~~ 350 (429)
T PRK02862 294 RYLPPSKLLDATITESIIAEGCII-KNCSIHHSVLGIR----------------------SRIESGCTIEDTLVMGADFY 350 (429)
T ss_pred CCCCCccccccEEEeCEECCCCEE-CCcEEEEEEEeCC----------------------cEECCCCEEEeeEEecCccc
Confidence 344455553466778999999999 8999999887776 9999999999999965
Q ss_pred ---------------CcEECCCcEEecCCCCCCCeeecCCeEEccCE-----------EEEcCC-CEeCCCccC
Q 044626 383 ---------------NARIGKNVLIINKDGVQEGDREANGYIISEGI-----------VVIIHG-AEIADGSII 429 (429)
Q Consensus 383 ---------------~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~-----------~~i~~~-~~i~~~~vv 429 (429)
++.||++|.|. ...+..+..+|+++.+.++. ++|+++ +.|+.++++
T Consensus 351 p~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (429)
T PRK02862 351 ESSEEREELRKEGKPPLGIGEGTTIK-RAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVI 423 (429)
T ss_pred ccccccccccccCCcccEECCCCEEE-EEEECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCC
Confidence 79999999995 34555666666666664221 455565 666666553
No 225
>PLN02739 serine acetyltransferase
Probab=98.49 E-value=3.7e-07 Score=86.31 Aligned_cols=36 Identities=33% Similarity=0.628 Sum_probs=21.2
Q ss_pred eEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECC
Q 044626 306 SVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGA 344 (429)
Q Consensus 306 ~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~ 344 (429)
+.||+++.|+. + .++||++|+||++|.|..++++++
T Consensus 212 A~IG~Gv~IdHg~---GVVIG~~avIGdnv~I~~gVTIGg 248 (355)
T PLN02739 212 ARIGKGILLDHGT---GVVIGETAVIGDRVSILHGVTLGG 248 (355)
T ss_pred ccccCceEEecCC---ceEECCCCEECCCCEEcCCceeCC
Confidence 45556666643 1 566666666666666666555554
No 226
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.49 E-value=2.4e-05 Score=77.78 Aligned_cols=198 Identities=15% Similarity=0.162 Sum_probs=118.8
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccC-CcchhHHHHHHhhHh----cCCCe-EEEEeecC-hhHHHHHHhccccCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLA-ANYRLVDAVVSNCIN----SNINK-IYALTQFN-STSLNLHLSRAFSGI 73 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~-g~~plI~~~i~~l~~----~gi~~-I~Iv~~~~-~~~i~~~l~~~~~~~ 73 (429)
|+-+|.||||.||||+ ..-||.|+|+. |+ ++++..++.+.. .|.+= .+|-+++. .+...++|.+... +
T Consensus 79 k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~-sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~-~ 153 (469)
T PLN02474 79 KLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTN-S 153 (469)
T ss_pred cEEEEEecCCcccccC---CCCCceeEEcCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCC-C
Confidence 4568999999999999 67899999994 56 999998888754 34322 24445544 5668888876321 1
Q ss_pred ccCCCCcEEEEeccccc------------------cccCc-ccCcHHHHHHH-----HHHhhcCCCCeEEEEcCceeE-e
Q 044626 74 LRGKDGFVEVIAAYQSL------------------EDQDW-FQGNADAIRRC-----LWVLEEYPVTEFLILPGHHLY-K 128 (429)
Q Consensus 74 ~~~~~~~v~i~~~~~~~------------------~~~~~-~~Gt~~al~~~-----~~~i~~~~~~~~lvl~gD~i~-~ 128 (429)
... +....|.. ....| |-|.++.+... ++.+.....+.+.+.+.|++. .
T Consensus 154 ~~~------i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~ 227 (469)
T PLN02474 154 NIE------IHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAI 227 (469)
T ss_pred ccc------eEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccc
Confidence 111 11111110 00113 56776655432 233433445899999999975 4
Q ss_pred ccHHHHHHHHHhcCCceEEEEEeccCCCCCCccEEEEcCCC--CEEEEEecCcccccccccCCCCCCCCCCCCCCcceee
Q 044626 129 MDYQRLIEAHRNNKADITIVALNAIRDKHPGFGLLRVNPVN--QVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMG 206 (429)
Q Consensus 129 ~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~--~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 206 (429)
.|. .++.++..+++++++=+.+-...+.+. |.+. ..+| ++.++.+-|...... ......-.+.+++
T Consensus 228 vDp-~~lg~~~~~~~e~~~ev~~Kt~~d~kg-G~l~-~~dgk~~lvEysqvp~e~~~~---------f~~~~kf~~fNtn 295 (469)
T PLN02474 228 VDL-KILNHLIQNKNEYCMEVTPKTLADVKG-GTLI-SYEGKVQLLEIAQVPDEHVNE---------FKSIEKFKIFNTN 295 (469)
T ss_pred cCH-HHHHHHHhcCCceEEEEeecCCCCCCc-cEEE-EECCEEEEEEEecCCHHHHHh---------hcccccceeeeee
Confidence 444 477888888888766443322222222 4443 2344 577777765433100 0000134567999
Q ss_pred EEEEcHHHHHHHHHh
Q 044626 207 IYLINRDTMSRLLKE 221 (429)
Q Consensus 207 iy~~~~~~l~~~l~~ 221 (429)
.++|+-++|+++++.
T Consensus 296 n~w~~L~~l~~~~~~ 310 (469)
T PLN02474 296 NLWVNLKAIKRLVEA 310 (469)
T ss_pred eEEEEHHHHHHHhhc
Confidence 999999999887764
No 227
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.48 E-value=7e-07 Score=82.36 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=17.7
Q ss_pred eEEecCcEECCCcEEecCCCCCCCeeecCCeEEccC
Q 044626 378 AVIDKNARIGKNVLIINKDGVQEGDREANGYIISEG 413 (429)
Q Consensus 378 ~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~ 413 (429)
+.||++|.||.+|.| +..+|++|+|++|
T Consensus 226 V~IGe~~~IGagA~I--------GI~IGd~~VVGAG 253 (319)
T TIGR03535 226 ISIGERCLLGANSGL--------GISLGDDCVVEAG 253 (319)
T ss_pred EEECCCcEECCCCEE--------CeEECCCCEECCC
Confidence 556666666666666 2455666666666
No 228
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.45 E-value=2.4e-06 Score=77.61 Aligned_cols=116 Identities=20% Similarity=0.220 Sum_probs=78.1
Q ss_pred EEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcC-CCeEEEEeecChhHHHHHHhccccCcccCCCCcEE
Q 044626 4 AVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSN-INKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVE 82 (429)
Q Consensus 4 avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~ 82 (429)
|||+|.+.++|+. -|.|.+++|+ |||+|+++.+.+++ +++|+|.|. .+++.+.+.+ ++.+ +-
T Consensus 2 aiIpAR~gS~rlp------~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaTd--~~~i~~~~~~----~g~~----v~ 64 (217)
T PF02348_consen 2 AIIPARGGSKRLP------GKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVATD--DEEIDDIAEE----YGAK----VI 64 (217)
T ss_dssp EEEEE-SSSSSST------TGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEES--SHHHHHHHHH----TTSE----EE
T ss_pred EEEecCCCCCCCC------cchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeCC--CHHHHHHHHH----cCCe----eE
Confidence 8999999999999 7999999999 99999999999886 799887774 4556666655 2211 21
Q ss_pred EEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCc
Q 044626 83 VIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKAD 144 (429)
Q Consensus 83 i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~ 144 (429)
....+. ..++......+.....+ ..+.++.+.||. +. ...+..+++.+.+..++
T Consensus 65 ~~~~~~-------~~~~~r~~~~~~~~~~~-~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 65 FRRGSL-------ADDTDRFIEAIKHFLAD-DEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp E--TTS-------SSHHHHHHHHHHHHTCS-TTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred EcChhh-------cCCcccHHHHHHHhhhh-HHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 111111 13443333333333332 234899999999 55 55578899999888765
No 229
>PLN02357 serine acetyltransferase
Probab=98.44 E-value=8.7e-07 Score=84.50 Aligned_cols=36 Identities=28% Similarity=0.621 Sum_probs=20.1
Q ss_pred EECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEECC
Q 044626 307 VVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGA 344 (429)
Q Consensus 307 ~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~ 344 (429)
.||+|+.|+.. ..++||++|+||++|.|..++++++
T Consensus 234 ~IG~Gv~Idh~--~giVIGe~avIGdnV~I~~gVtIGg 269 (360)
T PLN02357 234 KIGQGILLDHA--TGVVIGETAVVGNNVSILHNVTLGG 269 (360)
T ss_pred EECCCeEECCC--CceEECCCCEECCCCEEeCCceecC
Confidence 44444444430 0366666666666666666666654
No 230
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.43 E-value=1.2e-06 Score=77.12 Aligned_cols=26 Identities=42% Similarity=0.690 Sum_probs=10.0
Q ss_pred eEeCCCCee-cceEEecCcEECCCcEE
Q 044626 367 VGIGEDTQI-KKAVIDKNARIGKNVLI 392 (429)
Q Consensus 367 ~~ig~~~~i-~~~~ig~~~~ig~~~~i 392 (429)
+.||++|+| .+++|..+++||++|+|
T Consensus 130 v~IGd~v~IG~~a~I~~gv~IG~~~vI 156 (183)
T PRK10092 130 VTIGNNVWIGGRAVINPGVTIGDNVVV 156 (183)
T ss_pred eEECCCcEECCCCEECCCCEECCCCEE
Confidence 334444443 33333333333333333
No 231
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.42 E-value=1e-06 Score=69.84 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=16.9
Q ss_pred CcEEcCCcEECCCCEEecCeEECC
Q 044626 321 GTVIGMRTRIGDGAVIEDSVIMGA 344 (429)
Q Consensus 321 ~~~ig~~~~ig~~~~i~~~~~~~~ 344 (429)
.++|++++.||+++.|...+.+++
T Consensus 22 ~~~ig~~~~Ig~~~~i~~~~~i~~ 45 (101)
T cd03354 22 GIVIGETAVIGDNCTIYQGVTLGG 45 (101)
T ss_pred eEEECCCCEECCCCEEcCCCEECC
Confidence 467788888888887766665554
No 232
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.42 E-value=1.1e-06 Score=75.98 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=15.0
Q ss_pred eEeCCCCee-cceEEecCcEECCCcEEe
Q 044626 367 VGIGEDTQI-KKAVIDKNARIGKNVLII 393 (429)
Q Consensus 367 ~~ig~~~~i-~~~~ig~~~~ig~~~~i~ 393 (429)
|.||.++.| .+++||++|.||+++.+.
T Consensus 120 v~Ig~~a~I~~~v~IG~~~~Iga~s~V~ 147 (162)
T TIGR01172 120 VMIGAGAKVLGNIEVGENAKIGANSVVL 147 (162)
T ss_pred cEEcCCCEEECCcEECCCCEECCCCEEC
Confidence 455555555 345555555555555554
No 233
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.41 E-value=1.4e-06 Score=69.82 Aligned_cols=11 Identities=9% Similarity=0.084 Sum_probs=5.9
Q ss_pred CcEEcCCcEEC
Q 044626 321 GTVIGMRTRIG 331 (429)
Q Consensus 321 ~~~ig~~~~ig 331 (429)
++.|+++|.|.
T Consensus 29 ~~~I~~~~~I~ 39 (107)
T cd05825 29 DACISQGAYLC 39 (107)
T ss_pred CCEECCCeEee
Confidence 55555555554
No 234
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.40 E-value=9e-07 Score=88.41 Aligned_cols=66 Identities=17% Similarity=0.369 Sum_probs=54.4
Q ss_pred EeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEecCCC
Q 044626 318 KIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINKDG 397 (429)
Q Consensus 318 ~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~~ 397 (429)
.++++.||++|.|+ ++.|+++++..+ |.|+++|.|.+|+|+++|.||++|.|.+
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svIg~~----------------------~~I~~~~~i~~sii~~~~~i~~~~~i~~--- 365 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVLSPN----------------------VVVESGAEVEDSVLMDGVRIGRGAVVRR--- 365 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEECCC----------------------CEECCCCEEeeeEECCCCEECCCCEEEe---
Confidence 34589999999999 999999887766 8999999999999999999999999952
Q ss_pred CCCCeeecCCeEEccC
Q 044626 398 VQEGDREANGYIISEG 413 (429)
Q Consensus 398 ~~~~~~~~~~~~i~~~ 413 (429)
+.+++++.|+++
T Consensus 366 ----~ii~~~~~i~~~ 377 (407)
T PRK00844 366 ----AILDKNVVVPPG 377 (407)
T ss_pred ----eEECCCCEECCC
Confidence 344455555555
No 235
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.2e-06 Score=79.89 Aligned_cols=94 Identities=13% Similarity=0.169 Sum_probs=53.1
Q ss_pred cceeCCCCceecCCccCCCeEE-eeeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccc
Q 044626 277 YNFYDRDCPVYTMPRCLPPTMI-REAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQ 354 (429)
Q Consensus 277 ~~~~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~ 354 (429)
.+.++|+|.|++++.|++.+.+ +|+++.+++|-++|.|.+ +.|.+|+||..+.||..++++..-+...-
T Consensus 294 sakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~--------- 364 (407)
T KOG1460|consen 294 SAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSP--------- 364 (407)
T ss_pred cceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCC---------
Confidence 3444444444444445555555 455566666666666666 66666666666666666666654433320
Q ss_pred cCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEecC
Q 044626 355 SSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINK 395 (429)
Q Consensus 355 ~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~ 395 (429)
......-+++|..|.+++-|.+.++
T Consensus 365 ----------------~~~~~a~Tilga~v~v~dev~v~~s 389 (407)
T KOG1460|consen 365 ----------------NLPFAALTILGADVSVEDEVIVLNS 389 (407)
T ss_pred ----------------CCCcceeEEecccceecceeEEeee
Confidence 1112244667777777777766543
No 236
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.37 E-value=2.2e-06 Score=68.76 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=17.8
Q ss_pred eecCCccCCCeEEeeeEeeCeEECCCcEEcc-eEee
Q 044626 286 VYTMPRCLPPTMIREAVIRDSVVGDGCIINR-CKIK 320 (429)
Q Consensus 286 ~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~-~~v~ 320 (429)
+++++.|++++.+.+. .++.||++|.|+. +.|.
T Consensus 4 Ig~~~~I~~~~~i~~~--~~v~IG~~~~Ig~~~~i~ 37 (109)
T cd04647 4 IGDNVYIGPGCVISAG--GGITIGDNVLIGPNVTIY 37 (109)
T ss_pred ECCCcEECCCCEEecC--CceEECCCCEECCCCEEE
Confidence 4444555555555310 2567777777777 4443
No 237
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.34 E-value=3.2e-06 Score=71.49 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=14.2
Q ss_pred CcEEcCCcEECCCCEEecC
Q 044626 321 GTVIGMRTRIGDGAVIEDS 339 (429)
Q Consensus 321 ~~~ig~~~~ig~~~~i~~~ 339 (429)
.++||++|.|++++.|..+
T Consensus 21 ~i~IG~~~~I~~~v~i~~~ 39 (145)
T cd03349 21 KLSIGKFCSIAPGVKIGLG 39 (145)
T ss_pred CeEECCCCEECCCCEECCC
Confidence 5778888888888777655
No 238
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.24 E-value=4.1e-06 Score=80.24 Aligned_cols=61 Identities=21% Similarity=0.369 Sum_probs=39.6
Q ss_pred ECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEE
Q 044626 308 VGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARI 386 (429)
Q Consensus 308 ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~i 386 (429)
.-+.+.+.. +.+.+|.|+++|.|. | .|.+|++..+ +.|+++|.|++|+|=.+|.|
T Consensus 282 ~~pPak~~~~s~v~nSLv~~GciI~-G-~V~nSVL~~~----------------------v~I~~gs~i~~svim~~~~I 337 (393)
T COG0448 282 NLPPAKFVNDSEVSNSLVAGGCIIS-G-TVENSVLFRG----------------------VRIGKGSVIENSVIMPDVEI 337 (393)
T ss_pred CCCCceEecCceEeeeeeeCCeEEE-e-EEEeeEEecC----------------------eEECCCCEEEeeEEeCCcEE
Confidence 344444444 555567777777775 3 6677776665 66777777777777777777
Q ss_pred CCCcEE
Q 044626 387 GKNVLI 392 (429)
Q Consensus 387 g~~~~i 392 (429)
|+||+|
T Consensus 338 G~~~~l 343 (393)
T COG0448 338 GEGAVL 343 (393)
T ss_pred CCCCEE
Confidence 777777
No 239
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.17 E-value=2.3e-05 Score=68.81 Aligned_cols=115 Identities=17% Similarity=0.281 Sum_probs=80.6
Q ss_pred EEEEE-cCCCCCCcccccccccccccccCCcchhHHHHHHhhHhcC-CCeEEEEeecCh--hHHHHHHhccccCcccCCC
Q 044626 3 AAVVF-GDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINSN-INKIYALTQFNS--TSLNLHLSRAFSGILRGKD 78 (429)
Q Consensus 3 ~avIl-a~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~g-i~~I~Iv~~~~~--~~i~~~l~~~~~~~~~~~~ 78 (429)
-++|+ |.=.+|||. -|.|+|++++ |||+++|+++.++. +++++|.++.+. +.+.++..+ .|.
T Consensus 4 I~~IiQARmgStRLp------gKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~----~G~--- 69 (241)
T COG1861 4 ILVIIQARMGSTRLP------GKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS----HGF--- 69 (241)
T ss_pred EEEEeeecccCccCC------cchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH----cCe---
Confidence 34455 444567787 7999999999 99999999999886 789999987653 346666654 121
Q ss_pred CcEEEEeccccccccCcccCcH-HHHHHHHHHhhcCCCCeEEEEcCce-eEeccH-HHHHHHHHhcCCceE
Q 044626 79 GFVEVIAAYQSLEDQDWFQGNA-DAIRRCLWVLEEYPVTEFLILPGHH-LYKMDY-QRLIEAHRNNKADIT 146 (429)
Q Consensus 79 ~~v~i~~~~~~~~~~~~~~Gt~-~al~~~~~~i~~~~~~~~lvl~gD~-i~~~~l-~~~~~~~~~~~~~~t 146 (429)
.+ . .|.. +.|.+....++..+.+.++=+.||. +.+..+ ..+++.|.+++++.+
T Consensus 70 ---~v---f---------rGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~ 125 (241)
T COG1861 70 ---YV---F---------RGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYV 125 (241)
T ss_pred ---eE---e---------cCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccc
Confidence 11 1 2333 4444555555555457888899999 777766 778899988887653
No 240
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.15 E-value=0.00015 Score=68.39 Aligned_cols=198 Identities=13% Similarity=0.146 Sum_probs=117.5
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccC-CcchhHHHHHHhhHhc----CCC-eEEEEeecC-hhHHHHHHhccccCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLA-ANYRLVDAVVSNCINS----NIN-KIYALTQFN-STSLNLHLSRAFSGI 73 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~-g~~plI~~~i~~l~~~----gi~-~I~Iv~~~~-~~~i~~~l~~~~~~~ 73 (429)
|+-+|+||||.||||+ ...||.|+||. |+ ++++..++.+... |.+ -.+|-+++. .+...++|.+... .
T Consensus 3 kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~-s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~-~ 77 (300)
T cd00897 3 KLVVLKLNGGLGTSMG---CTGPKSLIEVRDGK-TFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAG-V 77 (300)
T ss_pred cEEEEEecCCcccccC---CCCCceeeecCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCC-C
Confidence 4568999999999997 67899999995 55 9999999998652 322 234455554 5678888876321 0
Q ss_pred ccCCCCcEEEEeccc------------------cccc-cCcccCcHHHHHHHH-----HHhhcCCCCeEEEEcCceeE-e
Q 044626 74 LRGKDGFVEVIAAYQ------------------SLED-QDWFQGNADAIRRCL-----WVLEEYPVTEFLILPGHHLY-K 128 (429)
Q Consensus 74 ~~~~~~~v~i~~~~~------------------~~~~-~~~~~Gt~~al~~~~-----~~i~~~~~~~~lvl~gD~i~-~ 128 (429)
.. ++....| .... .-.|.|.++...... +.+....-+.+.+.+.|++. .
T Consensus 78 ~~------~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~ 151 (300)
T cd00897 78 NV------DIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGAT 151 (300)
T ss_pred cc------CeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEeccccccc
Confidence 00 0111111 0001 112567766555332 23333345899999999966 3
Q ss_pred ccHHHHHHHHHhcCCceEEEEEeccCCCCC-CccEEE-EcCCCCEEEEEecCcccccccccCCCCCCCCCCCCCCcceee
Q 044626 129 MDYQRLIEAHRNNKADITIVALNAIRDKHP-GFGLLR-VNPVNQVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMG 206 (429)
Q Consensus 129 ~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~-~~g~v~-~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 206 (429)
.|. .++-++..+++++++=+.+ ...+. .=|++. .+..=++.++.+-|...... ......-.+.+++
T Consensus 152 ~Dp-~~lg~~~~~~~~~~~evv~--Kt~~dek~G~l~~~~g~~~vvEyse~p~e~~~~---------~~~~~~~~~~nt~ 219 (300)
T cd00897 152 VDL-RILNHMVDNKAEYIMEVTD--KTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDE---------FKSIKKFKIFNTN 219 (300)
T ss_pred CCH-HHHHHHHhcCCceEEEEee--cCCCCCcccEEEEECCEEEEEEeccCCHHHHHh---------hcCcccceEEEEe
Confidence 343 5788888888887763322 22232 234443 23223577777765532100 0000123467899
Q ss_pred EEEEcHHHHHHHHHh
Q 044626 207 IYLINRDTMSRLLKE 221 (429)
Q Consensus 207 iy~~~~~~l~~~l~~ 221 (429)
.++|+-++|+++++.
T Consensus 220 n~~~~l~~L~~~~~~ 234 (300)
T cd00897 220 NLWVNLKAVKRVVEE 234 (300)
T ss_pred EEEEEHHHHHHHHHh
Confidence 999999999877654
No 241
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.05 E-value=1.1e-05 Score=70.60 Aligned_cols=79 Identities=29% Similarity=0.520 Sum_probs=44.3
Q ss_pred EECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEE
Q 044626 307 VVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARI 386 (429)
Q Consensus 307 ~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~i 386 (429)
.||+|-.++.+ ...+||+-.+||.++.|...+.+++. |.++--.+-.||+||.|
T Consensus 156 ~ig~gilldha--tgvvigeTAvvg~~vSilH~Vtlggt------------------------gk~~gdrhP~Igd~vli 209 (269)
T KOG4750|consen 156 KIGKGILLDHA--TGVVIGETAVVGDNVSILHPVTLGGT------------------------GKGSGDRHPKIGDNVLI 209 (269)
T ss_pred hcccceeeccc--cceeecceeEeccceeeecceeeccc------------------------cccccccCCcccCCeEE
Confidence 45555555541 14666666666667777666666652 12222233466677777
Q ss_pred CCCcEEecCCCCCCCeeecCCeEEccCEEEE
Q 044626 387 GKNVLIINKDGVQEGDREANGYIISEGIVVI 417 (429)
Q Consensus 387 g~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i 417 (429)
|.++.|. ++.+||+|++|++|++++
T Consensus 210 GaGvtIL------gnV~IGegavIaAGsvV~ 234 (269)
T KOG4750|consen 210 GAGVTIL------GNVTIGEGAVIAAGSVVL 234 (269)
T ss_pred ccccEEe------CCeeECCCcEEeccceEE
Confidence 7776666 444555555555554333
No 242
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.04 E-value=1.2e-05 Score=85.07 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=19.5
Q ss_pred CeEECCCcEEcc-eE--eeCcEEcCCcEECCCCEEec
Q 044626 305 DSVVGDGCIINR-CK--IKGTVIGMRTRIGDGAVIED 338 (429)
Q Consensus 305 ~~~ig~~~~i~~-~~--v~~~~ig~~~~ig~~~~i~~ 338 (429)
.+.||+||.|++ .. ....+||+||.|+++|.+.+
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~ 148 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLG 148 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEc
Confidence 345666666665 21 12466667777766666654
No 243
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.01 E-value=4.1e-05 Score=76.14 Aligned_cols=94 Identities=16% Similarity=0.260 Sum_probs=62.8
Q ss_pred CeEEEEcCceeEeccHHHHHHHHHhcCCceEEEEEeccCCCCCCccEEEEcCCC---------CEEEEEecCcccccc--
Q 044626 116 TEFLILPGHHLYKMDYQRLIEAHRNNKADITIVALNAIRDKHPGFGLLRVNPVN---------QVIEFSMKSERETIT-- 184 (429)
Q Consensus 116 ~~~lvl~gD~i~~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~---------~v~~~~ek~~~~~~~-- 184 (429)
..++|..+|.++...-...+.. .+..++.+..+.+.+-..++|++.+|+++ .+.++..||..+...
T Consensus 54 pGv~V~s~D~vl~~~~~~~~~~---~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~~ 130 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDDPLIDW---DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRAS 130 (414)
T ss_pred cceEEEecccccccCccccCCC---CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHhC
Confidence 5689999995432221222222 23667777777766667899999999888 788899998876532
Q ss_pred -cccCCCCCCCCCCCCCCcceeeEEEEcHHHHHHHHHh
Q 044626 185 -SISGKSSRKSDSVASGNFPSMGIYLINRDTMSRLLKE 221 (429)
Q Consensus 185 -~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 221 (429)
.+..+ .....++|+++|+.+..++++..
T Consensus 131 ~av~~~---------~~~~ldsG~~~~s~~~~e~L~~~ 159 (414)
T PF07959_consen 131 GAVLPD---------GNVLLDSGIVFFSSKAVESLLYL 159 (414)
T ss_pred CcccCC---------CcccccccceeccHHHHHHHHHh
Confidence 11111 34567999999998877666553
No 244
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.00 E-value=2.1e-05 Score=69.92 Aligned_cols=36 Identities=28% Similarity=0.508 Sum_probs=24.6
Q ss_pred eCeEECCCcEEcc-eEe---eCcEEcCCcEECCCCEEecC
Q 044626 304 RDSVVGDGCIINR-CKI---KGTVIGMRTRIGDGAVIEDS 339 (429)
Q Consensus 304 ~~~~ig~~~~i~~-~~v---~~~~ig~~~~ig~~~~i~~~ 339 (429)
.+..+|++|.++. +.+ .+.+||+++.+++++.|...
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~ 105 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTN 105 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecC
Confidence 4567888888887 553 25667777777777776654
No 245
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.88 E-value=3.6e-05 Score=81.57 Aligned_cols=90 Identities=18% Similarity=0.390 Sum_probs=50.7
Q ss_pred CeEECCCcEEcc-eEee-C-cEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEe
Q 044626 305 DSVVGDGCIINR-CKIK-G-TVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVID 381 (429)
Q Consensus 305 ~~~ig~~~~i~~-~~v~-~-~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig 381 (429)
++.||++|.|+. .... + ++||++|.|+++|.|++.. ++++ . + .+.++.||
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~-~~~~---------------------~-~----~~~~v~IG 649 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHL-FEDR---------------------V-M----KSDTVTIG 649 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEecc-cccc---------------------c-c----ccCCeEEC
Confidence 466777777766 3222 2 6888888888888876522 2211 0 0 23455555
Q ss_pred cCcEECCCcEEecCCCCCCCeeecCCeEEccCEEEEcCCCEeCCCcc
Q 044626 382 KNARIGKNVLIINKDGVQEGDREANGYIISEGIVVIIHGAEIADGSI 428 (429)
Q Consensus 382 ~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~i~~~~v 428 (429)
++|.||.+|+|. .+.++|+++.|+++ +++-++..++++++
T Consensus 650 ~~~~IG~~a~V~------~g~~IGd~a~Ig~~-SvV~~g~~vp~~s~ 689 (695)
T TIGR02353 650 DGATLGPGAIVL------YGVVMGEGSVLGPD-SLVMKGEEVPAHTR 689 (695)
T ss_pred CCCEECCCCEEC------CCCEECCCCEECCC-CEEcCCcccCCCCE
Confidence 566666655554 33444555666666 45555555666553
No 246
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.87 E-value=0.00061 Score=68.41 Aligned_cols=204 Identities=10% Similarity=0.054 Sum_probs=117.9
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccC---CcchhHHHHHHhhHhcC-------------CCeE--EEEeecC-hhH
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLA---ANYRLVDAVVSNCINSN-------------INKI--YALTQFN-STS 61 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~---g~~plI~~~i~~l~~~g-------------i~~I--~Iv~~~~-~~~ 61 (429)
++-+|+||||.||||+ ...||.|++|+ ++ ++++...+.+.... --.| +|-++.. .+.
T Consensus 116 kvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~ 191 (493)
T PLN02435 116 KLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEA 191 (493)
T ss_pred CEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHH
Confidence 3457888999999999 67899999885 78 99999999874311 1123 5666654 677
Q ss_pred HHHHHhccccCcccCCCCcEEEEeccccc---------------cc-cCcccCcHHHHHHHH-----HHhhcCCCCeEEE
Q 044626 62 LNLHLSRAFSGILRGKDGFVEVIAAYQSL---------------ED-QDWFQGNADAIRRCL-----WVLEEYPVTEFLI 120 (429)
Q Consensus 62 i~~~l~~~~~~~~~~~~~~v~i~~~~~~~---------------~~-~~~~~Gt~~al~~~~-----~~i~~~~~~~~lv 120 (429)
..++|.+... +|+... .+....|.. .. ...|-|.++...... +.+....-+.+.+
T Consensus 192 T~~ff~~~~~-FGl~~~---~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v 267 (493)
T PLN02435 192 TRKFFESHKY-FGLEAD---QVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDC 267 (493)
T ss_pred HHHHHHhCCC-CCCCcc---ceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEE
Confidence 8899986432 454321 122222210 00 012678876655322 3333334589999
Q ss_pred EcCceeE-eccHHHHHHHHHhcCCceEEEEEeccCCCC-CCccEEEE-cCCC--CEEEEEecCcccccccccCCCCCCCC
Q 044626 121 LPGHHLY-KMDYQRLIEAHRNNKADITIVALNAIRDKH-PGFGLLRV-NPVN--QVIEFSMKSERETITSISGKSSRKSD 195 (429)
Q Consensus 121 l~gD~i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~-~~~g~v~~-d~~~--~v~~~~ek~~~~~~~~~~~~~~~~~~ 195 (429)
.+.|++. ...--.++-++..++.++.+-+.+- ..+ ..-|++.. +.+| .|.+|.|-+..... ..+. ..
T Consensus 268 ~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K--~~~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~---~~~~---~~ 339 (493)
T PLN02435 268 YGVDNALVRVADPTFLGYFIDKGVASAAKVVRK--AYPQEKVGVFVRRGKGGPLTVVEYSELDQAMAS---AINQ---QT 339 (493)
T ss_pred EecccccccccCHHHHHHHHhcCCceEEEeeec--CCCCCceeEEEEecCCCCEEEEEeccCCHHHHh---ccCc---cc
Confidence 9999954 3333457788888888876643322 123 22255543 3445 46666665432100 0000 00
Q ss_pred CCCCCCcceeeEEEEcHHHHHHHHH
Q 044626 196 SVASGNFPSMGIYLINRDTMSRLLK 220 (429)
Q Consensus 196 ~~~~~~~~~~Giy~~~~~~l~~~l~ 220 (429)
-.+.-...+.+.++|+-++|+++.+
T Consensus 340 g~L~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 340 GRLRYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred cccccchhhHHHhhccHHHHHHHHH
Confidence 0112345678889999999987643
No 247
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=97.85 E-value=3e-05 Score=62.84 Aligned_cols=87 Identities=20% Similarity=0.284 Sum_probs=48.7
Q ss_pred eCeEECCCcEEcc-eEeeC-------cEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCee
Q 044626 304 RDSVVGDGCIINR-CKIKG-------TVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQI 375 (429)
Q Consensus 304 ~~~~ig~~~~i~~-~~v~~-------~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i 375 (429)
.++.+|..|+++. +.++. -.-.-++.||+++.|+...+..+ +.||+.+.+
T Consensus 53 AnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnA----------------------AqIgsyVh~ 110 (184)
T KOG3121|consen 53 ANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNA----------------------AQIGSYVHL 110 (184)
T ss_pred ccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeeh----------------------hhheeeeEe
Confidence 3566666666666 43331 01112344555555555555554 456666666
Q ss_pred -cceEEecCcEECCCcEEecCCCCCCCeeecCCeEEcc
Q 044626 376 -KKAVIDKNARIGKNVLIINKDGVQEGDREANGYIISE 412 (429)
Q Consensus 376 -~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~i~~ 412 (429)
.+++||..|++.+-|.|.++..++..+.+...+.+++
T Consensus 111 GknaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g 148 (184)
T KOG3121|consen 111 GKNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGG 148 (184)
T ss_pred ccceeEcCceEhhhheeccCCcccCcccccCCceEEcC
Confidence 5667777777777777766655555555555555553
No 248
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.84 E-value=1.9e-05 Score=73.35 Aligned_cols=88 Identities=19% Similarity=0.131 Sum_probs=63.0
Q ss_pred cCCccCCCeEE-eeeEe-eCeEECCCcEEcceEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcc
Q 044626 288 TMPRCLPPTMI-REAVI-RDSVVGDGCIINRCKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAI 365 (429)
Q Consensus 288 ~~~~i~~~~~i-~~~~i-~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (429)
.+....-+-.+ +++.+ +++.+.+-+.+|. +|.||+|+.||++++|++++.+.+.. .-++
T Consensus 245 ~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~----~C~Ig~~vvIG~r~~i~~gV~l~~s~--------------il~~- 305 (371)
T KOG1322|consen 245 RSLPKYTSPRLLPGSKIVGNVLVDSIASIGE----NCSIGPNVVIGPRVRIEDGVRLQDST--------------ILGA- 305 (371)
T ss_pred hhCcccCCccccCCccccccEeeccccccCC----ccEECCCceECCCcEecCceEEEeeE--------------EEcc-
Confidence 33334434344 44443 5666666666776 99999999999999999999988721 1111
Q ss_pred eeEeCCCCeecceEEecCcEECCCcEEecC
Q 044626 366 PVGIGEDTQIKKAVIDKNARIGKNVLIINK 395 (429)
Q Consensus 366 ~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~ 395 (429)
..++++++|..+++|.++.||.++.|-+.
T Consensus 306 -~~~~~~s~i~s~ivg~~~~IG~~~~id~~ 334 (371)
T KOG1322|consen 306 -DYYETHSEISSSIVGWNVPIGIWARIDKN 334 (371)
T ss_pred -ceechhHHHHhhhccccccccCceEEecc
Confidence 35777888999999999999999988743
No 249
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.83 E-value=8e-05 Score=62.97 Aligned_cols=18 Identities=22% Similarity=0.472 Sum_probs=9.6
Q ss_pred cceEEecCcEECCCcEEe
Q 044626 376 KKAVIDKNARIGKNVLII 393 (429)
Q Consensus 376 ~~~~ig~~~~ig~~~~i~ 393 (429)
..+.||++|.||++|.+.
T Consensus 72 ~~~~Ig~~~~Ig~~~~i~ 89 (145)
T cd03349 72 GDVIIGNDVWIGHGATIL 89 (145)
T ss_pred CCcEECCCCEECCCCEEe
Confidence 445555555555555554
No 250
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=97.80 E-value=0.00016 Score=77.97 Aligned_cols=198 Identities=14% Similarity=0.141 Sum_probs=122.2
Q ss_pred eEEEEcCceeE--eccHHHHHHHHHhcCCceEEEEEeccCCCCCCccEEEEcCC--CCEEEEEecCcccccccccCCCCC
Q 044626 117 EFLILPGHHLY--KMDYQRLIEAHRNNKADITIVALNAIRDKHPGFGLLRVNPV--NQVIEFSMKSERETITSISGKSSR 192 (429)
Q Consensus 117 ~~lvl~gD~i~--~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~--~~v~~~~ek~~~~~~~~~~~~~~~ 192 (429)
.+||..||.+. +.++.+ -.+++++.+....+.+-..++|++..|.+ +++..+..||..+....+..+
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~--- 224 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKT--- 224 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcC---
Confidence 79999999744 322221 12456655555555555688999998877 688888999887765333322
Q ss_pred CCCCCCCCCcceeeEEEEcHHHHHHHHHhhCC------CCcccccccchhccc---------CCceEEEEEe-cceEEec
Q 044626 193 KSDSVASGNFPSMGIYLINRDTMSRLLKEYLP------EATDLGSEVIPAAIS---------IGMKVEAYLF-DGYWEDM 256 (429)
Q Consensus 193 ~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~------~~~~~~~d~l~~l~~---------~g~~i~~~~~-~~~~~~i 256 (429)
...+.++|+|+|+......+++.... ..-++..|++.-|-. ++.++.+.++ ++.++-+
T Consensus 225 ------~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~H~ 298 (974)
T PRK13412 225 ------HLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFYHY 298 (974)
T ss_pred ------CeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeEEe
Confidence 35688999999999887666554321 112334454444311 1345656665 4578899
Q ss_pred CCHHHHHHHhHhhhcccCCCcceeCCCCceecCCccCCCeEEeeeEeeCeEECCCcEEcc--eEeeCcEEcCCcEECCCC
Q 044626 257 RSIEAFYHANMECIKRSNMRYNFYDRDCPVYTMPRCLPPTMIREAVIRDSVVGDGCIINR--CKIKGTVIGMRTRIGDGA 334 (429)
Q Consensus 257 ~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~--~~v~~~~ig~~~~ig~~~ 334 (429)
+|-..|+..+..+..........++.. ..-+|. +.+.|+++..++.+++ +.+++|.|+.+++||.++
T Consensus 299 GTs~E~l~~~~~~q~~~~~~~~i~~~~------~~~~~~-----~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~ 367 (974)
T PRK13412 299 GTSRELISSTLAVQNLVTDQRRIMHRK------VKPHPA-----MFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRS 367 (974)
T ss_pred cCcHHHhcCchhHHHHhhhhhhhhccc------cCCCCc-----eEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCc
Confidence 999888865444333221111111111 111121 2346889999999998 336789999999999988
Q ss_pred EEecCe
Q 044626 335 VIEDSV 340 (429)
Q Consensus 335 ~i~~~~ 340 (429)
+|.+.-
T Consensus 368 Iisgv~ 373 (974)
T PRK13412 368 IITGVP 373 (974)
T ss_pred EEeccc
Confidence 887653
No 251
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.76 E-value=3.6e-05 Score=62.90 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=14.3
Q ss_pred eCeEECCCcEEcc-eEeeC
Q 044626 304 RDSVVGDGCIINR-CKIKG 321 (429)
Q Consensus 304 ~~~~ig~~~~i~~-~~v~~ 321 (429)
+.-+||+|+.|.+ +.+.|
T Consensus 46 GPI~iGEnniiEEyA~i~n 64 (190)
T KOG4042|consen 46 GPIYIGENNIIEEYAVIRN 64 (190)
T ss_pred CCEEEccCchhhhHHHHHh
Confidence 5679999999999 66654
No 252
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=97.75 E-value=0.0018 Score=64.30 Aligned_cols=200 Identities=20% Similarity=0.202 Sum_probs=111.9
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHh----cCCC-eEEEEeecC-hhHHHHHHhccccCcc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCIN----SNIN-KIYALTQFN-STSLNLHLSRAFSGIL 74 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~----~gi~-~I~Iv~~~~-~~~i~~~l~~~~~~~~ 74 (429)
|+-+|+||||.||||+ ...||.|+||....++++..++.+.. .|.+ -.+|-++.. .++..+++.+.+ +
T Consensus 56 kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyf---g 129 (420)
T PF01704_consen 56 KVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYF---G 129 (420)
T ss_dssp CEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGC---G
T ss_pred CEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhc---C
Confidence 4567889999999998 67899999995443899988888764 2432 235556654 677899998832 2
Q ss_pred cCCCCcEEEEecccc----------------c----cccCc-ccCcHHHHHHH-----HHHhhcCCCCeEEEEcCceeEe
Q 044626 75 RGKDGFVEVIAAYQS----------------L----EDQDW-FQGNADAIRRC-----LWVLEEYPVTEFLILPGHHLYK 128 (429)
Q Consensus 75 ~~~~~~v~i~~~~~~----------------~----~~~~~-~~Gt~~al~~~-----~~~i~~~~~~~~lvl~gD~i~~ 128 (429)
.+.+ +....|. . ....| |-|.++..... ++.+....-+.+.+.+.|++..
T Consensus 130 ~~~~----v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a 205 (420)
T PF01704_consen 130 LDVD----VFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGA 205 (420)
T ss_dssp SSCC----EEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-
T ss_pred CCcc----eEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCccc
Confidence 2211 1111111 0 00112 45776654432 2333334458999999999553
Q ss_pred ccHHHHHHHHHhcCCceEEEEEeccCCCCCCccEEEEcCCC--CEEEEEecCcccccccccCCCCCCCCCCCCCCcceee
Q 044626 129 MDYQRLIEAHRNNKADITIVALNAIRDKHPGFGLLRVNPVN--QVIEFSMKSERETITSISGKSSRKSDSVASGNFPSMG 206 (429)
Q Consensus 129 ~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~--~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 206 (429)
..=-.++-++.++++++.+=+.+-...+ ..-|++.. .+| ++.++.+-|.... .--.+. ....+.++|
T Consensus 206 ~~Dp~~lG~~~~~~~~~~~evv~Kt~~d-ek~Gvl~~-~~G~~~vvEysqip~~~~--~~~~~~-------~~~~~Fntn 274 (420)
T PF01704_consen 206 VVDPVFLGYMIEKNADFGMEVVPKTSPD-EKGGVLCR-YDGKLQVVEYSQIPKEHM--AEFKDI-------KGFLLFNTN 274 (420)
T ss_dssp TT-HHHHHHHHHTT-SEEEEEEE-CSTT-TSSEEEEE-ETTEEEEEEGGGS-HHGH--HHHTST-------TTSBEEEEE
T ss_pred ccCHHHHHHHHhccchhheeeeecCCCC-CceeEEEE-eCCccEEEEeccCCHHHH--Hhhhcc-------ccceEEEec
Confidence 3333577888888888766544432211 22354443 245 3444443332210 000011 023456888
Q ss_pred EEEEcHHHHHHHHHh
Q 044626 207 IYLINRDTMSRLLKE 221 (429)
Q Consensus 207 iy~~~~~~l~~~l~~ 221 (429)
-.+|+-.+|+++++.
T Consensus 275 Ni~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 275 NIWFSLDFLKRLLER 289 (420)
T ss_dssp EEEEEHHHHHHHHHT
T ss_pred eeeEEHHHHHHHHHh
Confidence 889999999988775
No 253
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.75 E-value=0.0011 Score=62.85 Aligned_cols=207 Identities=11% Similarity=0.029 Sum_probs=116.4
Q ss_pred EEEEEcCCCCCCccccccccccccccc---CCcchhHHHHHHhhHhcC--------C-CeEEEEeecC-hhHHHHHHhcc
Q 044626 3 AAVVFGDGSESRLYPLTKRRSEGAIPL---AANYRLVDAVVSNCINSN--------I-NKIYALTQFN-STSLNLHLSRA 69 (429)
Q Consensus 3 ~avIla~G~gsRl~plt~~~pK~Llpi---~g~~plI~~~i~~l~~~g--------i-~~I~Iv~~~~-~~~i~~~l~~~ 69 (429)
-+|+||||.||||+ ..-||.++|| .|+ ++++..++++.... . =-.+|-++.. .++..+++.+.
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 47899999999999 7789999999 588 99999999986532 1 1235566654 67788888763
Q ss_pred ccCcccCCCCcEEEEeccccc--------------cccC-----cccCcHHHHHHHH-----HHhhcCCCCeEEEEcCce
Q 044626 70 FSGILRGKDGFVEVIAAYQSL--------------EDQD-----WFQGNADAIRRCL-----WVLEEYPVTEFLILPGHH 125 (429)
Q Consensus 70 ~~~~~~~~~~~v~i~~~~~~~--------------~~~~-----~~~Gt~~al~~~~-----~~i~~~~~~~~lvl~gD~ 125 (429)
.. +|++.. ++....|.. .+++ .|-|.++...... +.+.+..-+.+.+..-|+
T Consensus 78 ~y-FGl~~~---~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN 153 (315)
T cd06424 78 NY-FGLEKD---QVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTN 153 (315)
T ss_pred Cc-cCCCcc---cEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecch
Confidence 22 444321 011111100 0111 2678866655432 233333457888888888
Q ss_pred eE-eccHHHHHHHHHhcCCceEEEEEeccCCCCCCccEEEE--cCCCC--E--EEEEecCccccccccc-CCCCCCCCCC
Q 044626 126 LY-KMDYQRLIEAHRNNKADITIVALNAIRDKHPGFGLLRV--NPVNQ--V--IEFSMKSERETITSIS-GKSSRKSDSV 197 (429)
Q Consensus 126 i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~--d~~~~--v--~~~~ek~~~~~~~~~~-~~~~~~~~~~ 197 (429)
.. ....-.++-++..+++++...+.+.. ..+.-|++.. ..+|+ | ++|.|-++.-...... .+... .. -
T Consensus 154 ~L~~~adP~fiG~~~~~~~d~~~k~v~~~--~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~-~~-~ 229 (315)
T cd06424 154 ALAFKAIPAVLGVSATKSLDMNSLTVPRK--PKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDD-KT-G 229 (315)
T ss_pred hhhhccChhhEEEEecCCCceEeEEEeCC--CCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccc-cc-c
Confidence 44 43334456666677777766544321 1244566542 23343 3 6666643311000000 00000 00 0
Q ss_pred CCCCcceeeEEEEcHHHHHHHHHh
Q 044626 198 ASGNFPSMGIYLINRDTMSRLLKE 221 (429)
Q Consensus 198 ~~~~~~~~Giy~~~~~~l~~~l~~ 221 (429)
.+-...+++.++|+-+.+.+.++.
T Consensus 230 ~s~f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 230 FSPFPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred cccCCCeeeeEEEeHHHHHHHHhh
Confidence 012356899999999888877764
No 254
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.0038 Score=61.53 Aligned_cols=170 Identities=15% Similarity=0.245 Sum_probs=99.8
Q ss_pred CeEEEEEcCCCCCCcccccccccccccccC-CcchhHHHHHHhhHhc----CCC-eEEEEeecChhHHHHHHhc-cccCc
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPLA-ANYRLVDAVVSNCINS----NIN-KIYALTQFNSTSLNLHLSR-AFSGI 73 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi~-g~~plI~~~i~~l~~~----gi~-~I~Iv~~~~~~~i~~~l~~-~~~~~ 73 (429)
|+-+|+||||.|+||+ ..-||.|++|. |+ |+++.+.+.+..+ +++ ..+|-++...++-..++.. .| +
T Consensus 105 klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y--~ 178 (472)
T COG4284 105 KLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDY--F 178 (472)
T ss_pred ceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhh--c
Confidence 3567899999999999 67899999999 77 9999998887653 332 2345555555444444432 12 1
Q ss_pred ccCC-------CCc-EEE-----Eecccccccc--Cc-ccCcHHHHHHHH-----HHhhcCCCCeEEEEcCceeE-eccH
Q 044626 74 LRGK-------DGF-VEV-----IAAYQSLEDQ--DW-FQGNADAIRRCL-----WVLEEYPVTEFLILPGHHLY-KMDY 131 (429)
Q Consensus 74 ~~~~-------~~~-v~i-----~~~~~~~~~~--~~-~~Gt~~al~~~~-----~~i~~~~~~~~lvl~gD~i~-~~~l 131 (429)
+.++ +.. ..+ .+.... +++ .| |.|.++-..... +.+....-+.+.|.+.|.+. ..|+
T Consensus 179 ~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~-~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~ 257 (472)
T COG4284 179 GLDKEDIFFFVQSLFPRLLSDSGLPFLES-DDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL 257 (472)
T ss_pred CCCHHHeEEEecCCcceeecccCcccccc-CCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH
Confidence 2110 000 000 000000 111 22 567765444322 22323345899999999955 5555
Q ss_pred HHHHHHHHhcCCceEEEEEeccCCCC-CCccEEE-EcCCCCEEEEEecCcc
Q 044626 132 QRLIEAHRNNKADITIVALNAIRDKH-PGFGLLR-VNPVNQVIEFSMKSER 180 (429)
Q Consensus 132 ~~~~~~~~~~~~~~ti~~~~~~~~~~-~~~g~v~-~d~~~~v~~~~ek~~~ 180 (429)
.++.++..++.+.++=++.-. ++ ..-|++. .|..-+++++.+-+..
T Consensus 258 -~~lg~~~~~~~e~~~e~t~Kt--~a~ekvG~Lv~~~g~~rllEysev~~~ 305 (472)
T COG4284 258 -KFLGFMAETNYEYLMETTDKT--KADEKVGILVTYDGKLRLLEYSEVPNE 305 (472)
T ss_pred -HHHHHHHhcCcceeEEEeecc--cccccceEEEEeCCceEEEEEecCChh
Confidence 578888888888766433321 22 2335554 6666688888887664
No 255
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.54 E-value=0.00046 Score=60.94 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=48.4
Q ss_pred eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCee-cceEEecCcEECCCcEEecC
Q 044626 317 CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQI-KKAVIDKNARIGKNVLIINK 395 (429)
Q Consensus 317 ~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~~~ig~~~~i~~~ 395 (429)
..++-.++|+++..|+++.|.+.++-.+ +.|+..|.+ .|.+++.++.||+++.|.+.
T Consensus 29 S~l~~~V~g~~iivge~v~i~Gdiva~d----------------------iridmw~kv~gNV~ve~dayiGE~~sI~gk 86 (277)
T COG4801 29 SMLKYGVVGEEIIVGERVRIYGDIVAKD----------------------IRIDMWCKVTGNVIVENDAYIGEFSSIKGK 86 (277)
T ss_pred ceeeeeeeeeeEEeccCcEEeeeEEecc----------------------eeeeeeeEeeccEEEcCceEEeccceeeee
Confidence 3333456677777777777766666654 667777666 56666667777777777666
Q ss_pred CCCCCCeeecCCeEEccC
Q 044626 396 DGVQEGDREANGYIISEG 413 (429)
Q Consensus 396 ~~~~~~~~~~~~~~i~~~ 413 (429)
.+..++..+|..+.|..|
T Consensus 87 l~v~gdLdig~dV~Iegg 104 (277)
T COG4801 87 LTVIGDLDIGADVIIEGG 104 (277)
T ss_pred EEEecccccccceEEecC
Confidence 666666666666666555
No 256
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.54 E-value=0.00068 Score=59.50 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=62.2
Q ss_pred ccccccccCC--cchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCc
Q 044626 22 RSEGAIPLAA--NYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGN 99 (429)
Q Consensus 22 ~pK~Llpi~g--~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt 99 (429)
.+|+|+++.| + |||+|+++.+. ..+++++|+++.. +.+ .. .+ +.++. +.. . -.|.
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~-~~~----~~----~~------~~~i~-d~~-~----g~gp 59 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPG-QPL----PE----LP------APVLR-DEL-R----GLGP 59 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCC-ccc----cc----CC------CCEec-cCC-C----CCCc
Confidence 5899999999 9 99999999875 4689999998754 211 11 11 11332 111 1 1577
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcCce-eEecc-HHHHHHHHHhc
Q 044626 100 ADAIRRCLWVLEEYPVTEFLILPGHH-LYKMD-YQRLIEAHRNN 141 (429)
Q Consensus 100 ~~al~~~~~~i~~~~~~~~lvl~gD~-i~~~~-l~~~~~~~~~~ 141 (429)
..++..++..+.....+.++++.||+ +.+.+ +..+++.+...
T Consensus 60 l~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~ 103 (178)
T PRK00576 60 LPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQT 103 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcC
Confidence 67666666544222238999999999 55444 57777765443
No 257
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.48 E-value=0.0003 Score=62.06 Aligned_cols=67 Identities=30% Similarity=0.431 Sum_probs=41.6
Q ss_pred eEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCee-cceEEecC
Q 044626 306 SVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQI-KKAVIDKN 383 (429)
Q Consensus 306 ~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~ig~~ 383 (429)
.++|+...++. +.+....++.+|+|+..|.+.++++.+++ +.||+++.| .+-++..+
T Consensus 34 ~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d---------------------ayiGE~~sI~gkl~v~gd 92 (277)
T COG4801 34 GVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND---------------------AYIGEFSSIKGKLTVIGD 92 (277)
T ss_pred eeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc---------------------eEEeccceeeeeEEEecc
Confidence 35555666666 66666666666666666666666666653 566666666 44555556
Q ss_pred cEECCCcEEe
Q 044626 384 ARIGKNVLII 393 (429)
Q Consensus 384 ~~ig~~~~i~ 393 (429)
-.||+++.|.
T Consensus 93 Ldig~dV~Ie 102 (277)
T COG4801 93 LDIGADVIIE 102 (277)
T ss_pred cccccceEEe
Confidence 6666666663
No 258
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.41 E-value=0.0004 Score=61.06 Aligned_cols=77 Identities=26% Similarity=0.342 Sum_probs=46.2
Q ss_pred EECCCCEEecCeEECCcccccccccccCCccccCCcceeEeCCCCeecceEEecCcEECCCcEEecCC--CCCCCeeecC
Q 044626 329 RIGDGAVIEDSVIMGADFYQQGEDIQSSGKCINHKAIPVGIGEDTQIKKAVIDKNARIGKNVLIINKD--GVQEGDREAN 406 (429)
Q Consensus 329 ~ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~ig~~~~ig~~~~i~~~~--~~~~~~~~~~ 406 (429)
-|.+.++|+.++.++... .+.||+-++| |++|.|..++.+++.. .-..+.+||+
T Consensus 150 dihpaa~ig~gilldhat-------------------gvvigeTAvv-----g~~vSilH~Vtlggtgk~~gdrhP~Igd 205 (269)
T KOG4750|consen 150 DIHPAAKIGKGILLDHAT-------------------GVVIGETAVV-----GDNVSILHPVTLGGTGKGSGDRHPKIGD 205 (269)
T ss_pred cccchhhcccceeecccc-------------------ceeecceeEe-----ccceeeecceeeccccccccccCCcccC
Confidence 456677777777777620 1455655444 4444444444443211 1123457788
Q ss_pred CeEEccCE-----EEEcCCCEeCCCccC
Q 044626 407 GYIISEGI-----VVIIHGAEIADGSII 429 (429)
Q Consensus 407 ~~~i~~~~-----~~i~~~~~i~~~~vv 429 (429)
|+.||.|+ +.||.+++|+|||+|
T Consensus 206 ~vliGaGvtILgnV~IGegavIaAGsvV 233 (269)
T KOG4750|consen 206 NVLIGAGVTILGNVTIGEGAVIAAGSVV 233 (269)
T ss_pred CeEEccccEEeCCeeECCCcEEeccceE
Confidence 88887775 678889999999886
No 259
>PLN02830 UDP-sugar pyrophosphorylase
Probab=97.34 E-value=0.024 Score=58.89 Aligned_cols=209 Identities=11% Similarity=0.023 Sum_probs=117.1
Q ss_pred CeEEEEEcCCCCCCccccccccccccccc---CCcchhHHHHHHhhHhc-----------CC-CeEEEEeecC-hhHHHH
Q 044626 1 SVAAVVFGDGSESRLYPLTKRRSEGAIPL---AANYRLVDAVVSNCINS-----------NI-NKIYALTQFN-STSLNL 64 (429)
Q Consensus 1 ~m~avIla~G~gsRl~plt~~~pK~Llpi---~g~~plI~~~i~~l~~~-----------gi-~~I~Iv~~~~-~~~i~~ 64 (429)
|+-+|+||||.||||+ ..-||.++|+ .|+ ++++..++.+... +. =-.+|-++.. .+...+
T Consensus 128 kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~ 203 (615)
T PLN02830 128 NAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLK 203 (615)
T ss_pred cEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHH
Confidence 4568899999999999 6789999998 378 9999999997653 11 1235556654 567888
Q ss_pred HHhccccCcccCCCCcEEEEecccc------------------ccc-cCcccCcHHHHHHHH-----HHhhcCCCCeEEE
Q 044626 65 HLSRAFSGILRGKDGFVEVIAAYQS------------------LED-QDWFQGNADAIRRCL-----WVLEEYPVTEFLI 120 (429)
Q Consensus 65 ~l~~~~~~~~~~~~~~v~i~~~~~~------------------~~~-~~~~~Gt~~al~~~~-----~~i~~~~~~~~lv 120 (429)
+|.+.. ++|+... ++....|. +.. ...|-|.++...... +.+....-+.+.+
T Consensus 204 ~~~~n~-~FGl~~~---~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v 279 (615)
T PLN02830 204 LLERND-YFGMDPD---QVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVF 279 (615)
T ss_pred HHHHCC-ccCCCcc---ceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEE
Confidence 888642 2444321 11111111 000 012567766544432 2333334579999
Q ss_pred EcCceeE-eccHHHHHHHHHhcCCceEEEEEeccCCCCCCccEEEE--cCCCC----EEEEEecCccccccccc-CCCCC
Q 044626 121 LPGHHLY-KMDYQRLIEAHRNNKADITIVALNAIRDKHPGFGLLRV--NPVNQ----VIEFSMKSERETITSIS-GKSSR 192 (429)
Q Consensus 121 l~gD~i~-~~~l~~~~~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~--d~~~~----v~~~~ek~~~~~~~~~~-~~~~~ 192 (429)
.+.|+.. ....-.++-++..+++++.+-+.+-.. ...-|++.. ..+|. +++|.+.+..-....-+ .+..
T Consensus 280 ~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~~a~~p~g~l~- 356 (615)
T PLN02830 280 FQDTNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLLRATGHPDGDVN- 356 (615)
T ss_pred EeccchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHHHhccCCCcccc-
Confidence 9999933 333356788888888887765543221 234455543 23343 34565553321000000 0000
Q ss_pred CCCCCCCCCcceeeEEEEcHHHHHHHHHh
Q 044626 193 KSDSVASGNFPSMGIYLINRDTMSRLLKE 221 (429)
Q Consensus 193 ~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 221 (429)
.... -+..--++...+++-..+.+.+++
T Consensus 357 ~~~~-~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 357 DETG-YSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred cccc-cccCCCCceeeEeeHHHHHHHHHh
Confidence 0000 011123778888998888878775
No 260
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.30 E-value=0.00029 Score=44.04 Aligned_cols=32 Identities=47% Similarity=0.709 Sum_probs=16.3
Q ss_pred CeEECCCcEEcc-eEe-eCcEEcCCcEECCCCEE
Q 044626 305 DSVVGDGCIINR-CKI-KGTVIGMRTRIGDGAVI 336 (429)
Q Consensus 305 ~~~ig~~~~i~~-~~v-~~~~ig~~~~ig~~~~i 336 (429)
++.||++|.|++ +.+ .++.||++|.|++++.|
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp TEEEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred CCEEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 356666666666 332 14555555555555444
No 261
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.24 E-value=0.00051 Score=42.27 Aligned_cols=30 Identities=43% Similarity=0.766 Sum_probs=14.6
Q ss_pred eEECCCcEEcc-eEeeCcEEcCCcEECCCCEE
Q 044626 306 SVVGDGCIINR-CKIKGTVIGMRTRIGDGAVI 336 (429)
Q Consensus 306 ~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i 336 (429)
+.||++|.|+. +.+ .++||++|.|+++++|
T Consensus 2 v~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 57888888888 443 3444555555555444
No 262
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.11 E-value=0.0007 Score=42.26 Aligned_cols=16 Identities=44% Similarity=0.517 Sum_probs=7.4
Q ss_pred eEEecCcEECCCcEEe
Q 044626 378 AVIDKNARIGKNVLII 393 (429)
Q Consensus 378 ~~ig~~~~ig~~~~i~ 393 (429)
+.||++|.|++++.|.
T Consensus 2 ~~Ig~~~~i~~~~~i~ 17 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIG 17 (36)
T ss_dssp EEEETTEEEETTEEEE
T ss_pred CEEcCCCEECCCcEec
Confidence 3444444444444444
No 263
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=96.96 E-value=0.0028 Score=56.17 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=17.8
Q ss_pred CCcEEcc-eEee-C--cEEcCCcEECCCCEEecCeEEC
Q 044626 310 DGCIINR-CKIK-G--TVIGMRTRIGDGAVIEDSVIMG 343 (429)
Q Consensus 310 ~~~~i~~-~~v~-~--~~ig~~~~ig~~~~i~~~~~~~ 343 (429)
.+..++. +.+. + ...+++++||+++.+...+.+.
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~ 103 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIY 103 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEe
Confidence 6666666 4442 2 2334555566666665554444
No 264
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.83 E-value=0.2 Score=48.55 Aligned_cols=205 Identities=13% Similarity=0.139 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCCcchhHHHHHHhhHh----cCCCeEEEEee-cC-hhHHHHHHhccccCccc
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAANYRLVDAVVSNCIN----SNINKIYALTQ-FN-STSLNLHLSRAFSGILR 75 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~----~gi~~I~Iv~~-~~-~~~i~~~l~~~~~~~~~ 75 (429)
+..+=|-||.|+-|+ ..-||.+++|-+-++.++-++.+... .+++--.++.+ ++ .++.++.+.++... ..
T Consensus 104 LavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~-kv 179 (498)
T KOG2638|consen 104 LAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGS-KV 179 (498)
T ss_pred eEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCC-ce
Confidence 345568899999999 77899999997655877765555433 34554455544 33 45666667664321 11
Q ss_pred CC-----C--CcE---EEEeccc-cc--cccCc-ccCcHHHHHHHH-----HHhhcCCCCeEEEEcCceeE-eccHHHHH
Q 044626 76 GK-----D--GFV---EVIAAYQ-SL--EDQDW-FQGNADAIRRCL-----WVLEEYPVTEFLILPGHHLY-KMDYQRLI 135 (429)
Q Consensus 76 ~~-----~--~~v---~i~~~~~-~~--~~~~~-~~Gt~~al~~~~-----~~i~~~~~~~~lvl~gD~i~-~~~l~~~~ 135 (429)
+. . +.+ ..+|+.. .. +...| |-|.++-..... +.+-....+.++|-+.|.+. ..||. ++
T Consensus 180 ~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~-IL 258 (498)
T KOG2638|consen 180 DIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLN-IL 258 (498)
T ss_pred eEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHH-HH
Confidence 10 0 001 1222221 00 11235 556655433221 22211234899999999987 67774 56
Q ss_pred HHHHhcCCceEEEEEeccCCCCCCccEEEEcCCCCEE--EEEecCcccccccccCCCCCCCCCCCCCCcceeeEEEEcHH
Q 044626 136 EAHRNNKADITIVALNAIRDKHPGFGLLRVNPVNQVI--EFSMKSERETITSISGKSSRKSDSVASGNFPSMGIYLINRD 213 (429)
Q Consensus 136 ~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~--~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~ 213 (429)
+.....+....|=+++-.. +.-.|-..++-+|++. ++..-|.... +. ......-...++.--+++-.
T Consensus 259 n~~i~~~~ey~MEvTdKT~--aDvKgGtLi~y~G~lrlLEiaQVP~ehv------~e---FkS~kkFkifNTNNlWinLk 327 (498)
T KOG2638|consen 259 NHVINNNIEYLMEVTDKTR--ADVKGGTLIQYEGKLRLLEIAQVPKEHV------DE---FKSIKKFKIFNTNNLWINLK 327 (498)
T ss_pred HHHhcCCCceEEEecccch--hhcccceEEeecCEEEEEEeccCChhHh------hh---hccceeEEEeccCCeEEehH
Confidence 6666666555443333221 1111222233345443 3433333210 00 00000112345555677777
Q ss_pred HHHHHHHhh
Q 044626 214 TMSRLLKEY 222 (429)
Q Consensus 214 ~l~~~l~~~ 222 (429)
++++++++.
T Consensus 328 avKrlve~~ 336 (498)
T KOG2638|consen 328 AVKKLVEEN 336 (498)
T ss_pred HHHHHhhcC
Confidence 788777763
No 265
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=96.36 E-value=0.0077 Score=37.01 Aligned_cols=13 Identities=46% Similarity=0.549 Sum_probs=4.6
Q ss_pred EecCcEECCCcEE
Q 044626 380 IDKNARIGKNVLI 392 (429)
Q Consensus 380 ig~~~~ig~~~~i 392 (429)
||++|.||++|.+
T Consensus 4 IG~~~~ig~~~~i 16 (34)
T PF14602_consen 4 IGDNCFIGANSTI 16 (34)
T ss_dssp E-TTEEE-TT-EE
T ss_pred ECCCEEECccccc
Confidence 4444444444443
No 266
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=95.23 E-value=0.089 Score=46.70 Aligned_cols=86 Identities=16% Similarity=0.146 Sum_probs=58.7
Q ss_pred cchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHHHHHHHHHhh
Q 044626 32 NYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLE 111 (429)
Q Consensus 32 ~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~ 111 (429)
+ |||+|+++.+...++++++++++. +++.+++.. ++ +.++. +.. .|...+++.+++++.
T Consensus 30 ~-~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~----~~------v~~i~--~~~------~G~~~si~~al~~~~ 88 (195)
T TIGR03552 30 L-AMLRDVITALRGAGAGAVLVVSPD--PALLEAARN----LG------APVLR--DPG------PGLNNALNAALAEAR 88 (195)
T ss_pred H-HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh----cC------CEEEe--cCC------CCHHHHHHHHHHHhh
Confidence 5 999999999999887888888764 334444332 11 22331 211 388999999988775
Q ss_pred cCCCCeEEEEcCce-eE-eccHHHHHHHHH
Q 044626 112 EYPVTEFLILPGHH-LY-KMDYQRLIEAHR 139 (429)
Q Consensus 112 ~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~ 139 (429)
.. .+.++++.||+ +. ...+..+++.+.
T Consensus 89 ~~-~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 89 EP-GGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred cc-CCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 32 25899999999 44 556788887653
No 267
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=94.55 E-value=0.55 Score=38.47 Aligned_cols=98 Identities=15% Similarity=0.058 Sum_probs=63.4
Q ss_pred cccCCcchhHHHHHHhhHhcC--CCeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHHHH
Q 044626 27 IPLAANYRLVDAVVSNCINSN--INKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADAIR 104 (429)
Q Consensus 27 lpi~g~~plI~~~i~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~ 104 (429)
+|..|+.+++.++++++.+.+ ..+++|+.+...+...+.+.+.... .. ..... ... ...|.+.++.
T Consensus 3 i~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~----~~~~~--~~~-----~~~g~~~~~~ 70 (156)
T cd00761 3 IPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DP----RVIRV--INE-----ENQGLAAARN 70 (156)
T ss_pred EeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CC----CeEEE--Eec-----CCCChHHHHH
Confidence 455555589999999999887 7788888877665565655543210 00 01111 111 1258888888
Q ss_pred HHHHHhhcCCCCeEEEEcCceeEeccH-HHHHHHHH
Q 044626 105 RCLWVLEEYPVTEFLILPGHHLYKMDY-QRLIEAHR 139 (429)
Q Consensus 105 ~~~~~i~~~~~~~~lvl~gD~i~~~~l-~~~~~~~~ 139 (429)
.+++... .+.++++.+|.++..++ ..++..+.
T Consensus 71 ~~~~~~~---~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 71 AGLKAAR---GEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHhc---CCEEEEECCCCccCccHHHHHHHHHh
Confidence 8887775 38999999999885554 55534433
No 268
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=92.23 E-value=1.9 Score=36.06 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=66.5
Q ss_pred ccccCCcchhHHHHHHhhHhc--CCCeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHHH
Q 044626 26 AIPLAANYRLVDAVVSNCINS--NINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADAI 103 (429)
Q Consensus 26 Llpi~g~~plI~~~i~~l~~~--gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al 103 (429)
++|.-|+...|..+|+.+.+. ...+|+|+-....+...+.+.+... .+ ..++++...+ ..|.+.++
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~----~~i~~i~~~~-------n~g~~~~~ 70 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SD----PNIRYIRNPE-------NLGFSAAR 70 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CS----TTEEEEEHCC-------CSHHHHHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-cc----cccccccccc-------cccccccc
Confidence 356666646889999998776 3566666654433334444443221 11 1244443222 14888888
Q ss_pred HHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHhcCCceEEEE
Q 044626 104 RRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRNNKADITIVA 149 (429)
Q Consensus 104 ~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~~~~~ti~~ 149 (429)
..+.+.... +.++++..|.+...+ +..+++.+.+.+.++.+..
T Consensus 71 n~~~~~a~~---~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 71 NRGIKHAKG---EYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp HHHHHH--S---SEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cccccccce---eEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 888887774 799999999988555 6889998888766654443
No 269
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=91.01 E-value=3.8 Score=35.78 Aligned_cols=112 Identities=20% Similarity=0.263 Sum_probs=67.9
Q ss_pred eEEEEEc---CCCCCCcccccc-cccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCC
Q 044626 2 VAAVVFG---DGSESRLYPLTK-RRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGK 77 (429)
Q Consensus 2 m~avIla---~G~gsRl~plt~-~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 77 (429)
|.+||+- ++.-|||.|.-+ +.-+.++ . -||-.++..+... +.+|.|++... .+.++-.+
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~----l-aML~dvi~Al~~~-~~~i~Vvtpde--~~~~~a~~--------- 63 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA----L-AMLVDVLGALAGV-LGEITVVTPDE--EVLVPATK--------- 63 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH----H-HHHHHHHHHhhhh-cCCceEEcCCh--Hhhhhccc---------
Confidence 6778875 467888887632 2223222 2 6888999998876 78999988642 12111111
Q ss_pred CCcEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce-eE-eccHHHHHHHHHhcCCceEE
Q 044626 78 DGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH-LY-KMDYQRLIEAHRNNKADITI 147 (429)
Q Consensus 78 ~~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~-i~-~~~l~~~~~~~~~~~~~~ti 147 (429)
.+++. +. + ++ .++.++++.+.. ++.++|+++|+ +. ..+++.+++..+. ++..+
T Consensus 64 ---~~vl~-d~---d----LN--~Ai~aa~~~~~~--p~~v~vvmaDLPLl~~~~i~~~~~~~~d--~dvvi 118 (210)
T COG1920 64 ---LEVLA-DP---D----LN--TAINAALDEIPL--PSEVIVVMADLPLLSPEHIERALSAAKD--ADVVI 118 (210)
T ss_pred ---ceeee-cc---c----hH--HHHHHHHhhCCC--CcceEEEecccccCCHHHHHHHHHhcCC--CcEEE
Confidence 12321 11 0 23 367777777763 26799999999 44 7788888876433 44444
No 270
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=88.58 E-value=0.84 Score=45.65 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=32.2
Q ss_pred eeEeeCeEECCCcEEcc-eEeeCcEEcCCcEECCCCEEecCeEEC
Q 044626 300 EAVIRDSVVGDGCIINR-CKIKGTVIGMRTRIGDGAVIEDSVIMG 343 (429)
Q Consensus 300 ~~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~~~~~ 343 (429)
++.|-|+++..++.+++ +.|.+|.++.++.||++|.|.+.-+..
T Consensus 279 ~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~ 323 (414)
T PF07959_consen 279 SSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINS 323 (414)
T ss_pred CeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCcccc
Confidence 34445778888888887 777888888888888888877665443
No 271
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.03 E-value=9.5 Score=31.73 Aligned_cols=98 Identities=11% Similarity=0.076 Sum_probs=61.7
Q ss_pred cccCCcchhHHHHHHhhHhcC--CCeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHHHH
Q 044626 27 IPLAANYRLVDAVVSNCINSN--INKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADAIR 104 (429)
Q Consensus 27 lpi~g~~plI~~~i~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~ 104 (429)
+|.-|+..++..+++.+.+.. ..+++|+-....+...+.+.+... .+.++.... ..|.+.++.
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~--------~~~~~~~~~-------~~g~~~a~n 67 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP--------EVRLIRNGE-------NLGFGAGNN 67 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC--------CeEEEecCC-------CcChHHHhh
Confidence 456565478999999997753 456766665444445555544221 122332111 258888888
Q ss_pred HHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHhcC
Q 044626 105 RCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRNNK 142 (429)
Q Consensus 105 ~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~~ 142 (429)
.+++... .+.++++..|..+..+ +..+++.+....
T Consensus 68 ~~~~~~~---~~~i~~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 68 QGIREAK---GDYVLLLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred HHHhhCC---CCEEEEECCCcEECccHHHHHHHHHHhCC
Confidence 8887775 3899999999977444 677777655543
No 272
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=86.89 E-value=1.5 Score=40.27 Aligned_cols=48 Identities=19% Similarity=0.085 Sum_probs=35.4
Q ss_pred cCcHHHHHHHHHHhhcCCCCeEEEEcCceeEec-cHHHHHHHHHhcCCceEE
Q 044626 97 QGNADAIRRCLWVLEEYPVTEFLILPGHHLYKM-DYQRLIEAHRNNKADITI 147 (429)
Q Consensus 97 ~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~-~l~~~~~~~~~~~~~~ti 147 (429)
.|.+.++..+..... .+.++++.+|...+. .+..+++...+.+.+++.
T Consensus 79 ~G~~~a~n~g~~~a~---g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 127 (243)
T PLN02726 79 LGLGTAYIHGLKHAS---GDFVVIMDADLSHHPKYLPSFIKKQRETGADIVT 127 (243)
T ss_pred CCHHHHHHHHHHHcC---CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEE
Confidence 588888888877665 389999999997744 467888877666666544
No 273
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=84.88 E-value=0.85 Score=45.34 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=46.2
Q ss_pred eEEEEEcCCCCCCcccccccccccccccCC---cchhHHHHHHhhHhc----------CCCeE-EEEeecC-hhHHHHHH
Q 044626 2 VAAVVFGDGSESRLYPLTKRRSEGAIPLAA---NYRLVDAVVSNCINS----------NINKI-YALTQFN-STSLNLHL 66 (429)
Q Consensus 2 m~avIla~G~gsRl~plt~~~pK~Llpi~g---~~plI~~~i~~l~~~----------gi~~I-~Iv~~~~-~~~i~~~l 66 (429)
..++++|||.|||++ ...||.++|++- + .++++..+.+... |.+=. +|-++.. .+...+|+
T Consensus 98 ~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~-slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~f 173 (477)
T KOG2388|consen 98 VAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGK-SLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEYF 173 (477)
T ss_pred ceEEEeccCceeeec---cCCCcceeecCCcccc-chhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhHH
Confidence 468999999999998 678999999984 4 5888887776442 32212 3334433 45667777
Q ss_pred hccccCcccC
Q 044626 67 SRAFSGILRG 76 (429)
Q Consensus 67 ~~~~~~~~~~ 76 (429)
..... +|++
T Consensus 174 ~~~~~-FGl~ 182 (477)
T KOG2388|consen 174 ESHKY-FGLK 182 (477)
T ss_pred hhcCC-CCCC
Confidence 64322 4543
No 274
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=84.85 E-value=13 Score=33.31 Aligned_cols=97 Identities=12% Similarity=0.175 Sum_probs=61.5
Q ss_pred ccccCCcc-hhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHHHH
Q 044626 26 AIPLAANY-RLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADAIR 104 (429)
Q Consensus 26 Llpi~g~~-plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~ 104 (429)
++|.-|.. +.|..+|+.+.+....+|+|+.....+...+.+...... ..+.+.. .. ..|.+.++.
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~------~~~~v~~--~~------~~g~~~a~n 70 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKY------GGIFVIT--VP------HPGKRRALA 70 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccC------CcEEEEe--cC------CCChHHHHH
Confidence 45666664 689999999877655677777655444455554221111 1122332 11 147778887
Q ss_pred HHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHH
Q 044626 105 RCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHR 139 (429)
Q Consensus 105 ~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~ 139 (429)
.++...+ .+.++++.+|.....+ +..+++.+.
T Consensus 71 ~g~~~a~---~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 71 EGIRHVT---TDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHhC---CCEEEEECCCceeChhHHHHHHHhcc
Confidence 7776664 3999999999988555 678887765
No 275
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=83.99 E-value=10 Score=33.50 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=36.1
Q ss_pred cCcHHHHHHHHHHhhcCCCCeEEEEcCceeEec-cHHHHHHHHHhcCCceEE
Q 044626 97 QGNADAIRRCLWVLEEYPVTEFLILPGHHLYKM-DYQRLIEAHRNNKADITI 147 (429)
Q Consensus 97 ~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~-~l~~~~~~~~~~~~~~ti 147 (429)
.|.+.++..+.+.... +.++++.+|..... .+..+++.....+.++++
T Consensus 68 ~G~~~a~~~g~~~a~g---d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~ 116 (211)
T cd04188 68 RGKGGAVRAGMLAARG---DYILFADADLATPFEELEKLEEALKTSGYDIAI 116 (211)
T ss_pred CCcHHHHHHHHHHhcC---CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence 6889999998887763 89999999997744 467788775555555544
No 276
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=83.97 E-value=14 Score=30.61 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=58.4
Q ss_pred ccccCCcchhHHHHHHhhHhcC--CCeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHHH
Q 044626 26 AIPLAANYRLVDAVVSNCINSN--INKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADAI 103 (429)
Q Consensus 26 Llpi~g~~plI~~~i~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al 103 (429)
.+|.-|+...|..+|+.+.+.. ..+++|+-....+...+.+.+...... ..+.+..... ..|.+.++
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~----~~~~~~~~~~-------~~g~~~~~ 70 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYI----RRVLVVRDKE-------NGGKAGAL 70 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhcccc----ceEEEEEecc-------cCCchHHH
Confidence 3566665468888899987764 346666654333333334433211000 0111221111 25888888
Q ss_pred HHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHhc
Q 044626 104 RRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRNN 141 (429)
Q Consensus 104 ~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~ 141 (429)
..+++... .+.++++.+|.+...+ +..++..+.+.
T Consensus 71 n~~~~~~~---~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 71 NAGLRHAK---GDIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred HHHHHhcC---CCEEEEECCCCCcChHHHHHHHHHhccC
Confidence 88887775 3899999999977444 56665555443
No 277
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=82.18 E-value=13 Score=31.70 Aligned_cols=106 Identities=14% Similarity=0.098 Sum_probs=61.7
Q ss_pred cccCCcchhHHHHHHhhHhc----CCCeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHH
Q 044626 27 IPLAANYRLVDAVVSNCINS----NINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADA 102 (429)
Q Consensus 27 lpi~g~~plI~~~i~~l~~~----gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~a 102 (429)
+|..|....|..+|+.+.+. ...+|+|+-+...+...+.+++....+ ..+.++.... ..|.+.+
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~-----~~~~~~~~~~-------n~G~~~a 70 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARV-----PRVRVIRLSR-------NFGKGAA 70 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhC-----CCeEEEEccC-------CCCccHH
Confidence 45555534677788887765 256676665443333333333211101 0122332222 2588888
Q ss_pred HHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHhcCCceEE
Q 044626 103 IRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRNNKADITI 147 (429)
Q Consensus 103 l~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~~~~~ti 147 (429)
+..+.+.... +.++++.+|.....+ +..+++.....+.++.+
T Consensus 71 ~n~g~~~a~g---d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 113 (185)
T cd04179 71 VRAGFKAARG---DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVI 113 (185)
T ss_pred HHHHHHHhcC---CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence 8888877663 899999999876444 68888875555555544
No 278
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=81.90 E-value=25 Score=30.82 Aligned_cols=100 Identities=8% Similarity=0.063 Sum_probs=62.7
Q ss_pred hhHHHHHHhh-HhcCCCeEEEEeecC----hhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHHHHHHHH
Q 044626 34 RLVDAVVSNC-INSNINKIYALTQFN----STSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADAIRRCLW 108 (429)
Q Consensus 34 plI~~~i~~l-~~~gi~~I~Iv~~~~----~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~ 108 (429)
|++-|.+... .+.+.+-=+|++... ..+..+.|++.+.. .++-+.+-.. .+|-+.|..+++.
T Consensus 19 pi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~------d~i~l~pR~~-------klGLgtAy~hgl~ 85 (238)
T KOG2978|consen 19 PIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGE------DNILLKPRTK-------KLGLGTAYIHGLK 85 (238)
T ss_pred eeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCC------CcEEEEeccC-------cccchHHHHhhhh
Confidence 6666766664 445654434444322 24566777765432 2243443222 2688889999988
Q ss_pred HhhcCCCCeEEEEcCceeEecc-HHHHHHHHHhcCCceEEEE
Q 044626 109 VLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRNNKADITIVA 149 (429)
Q Consensus 109 ~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~~~~~ti~~ 149 (429)
+.+. +.++++.+|+-.... +.++++...+.+.+.+...
T Consensus 86 ~a~g---~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GT 124 (238)
T KOG2978|consen 86 HATG---DFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGT 124 (238)
T ss_pred hccC---CeEEEEeCccCCCchhHHHHHHHhhccCcceeeee
Confidence 8774 778888999866444 5888888888777776654
No 279
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=81.53 E-value=15 Score=33.08 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=60.6
Q ss_pred ccccCCcchhHHHHHHhhHhcCC----CeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHH
Q 044626 26 AIPLAANYRLVDAVVSNCINSNI----NKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNAD 101 (429)
Q Consensus 26 Llpi~g~~plI~~~i~~l~~~gi----~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~ 101 (429)
++|..|+.+.|..+|+.+.+... -+|+|+-+...+...+.+...... ...+.++... + .|-+.
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~-----~~~v~~i~~~----~----~~~~~ 71 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAK-----DPRIRLIDNP----K----RIQSA 71 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhc-----CCeEEEEeCC----C----CCchH
Confidence 35555654678888999876543 366666544444344444331110 0113333211 1 35667
Q ss_pred HHHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHhcCCce
Q 044626 102 AIRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRNNKADI 145 (429)
Q Consensus 102 al~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~~~~~ 145 (429)
++..+.+..+ .+.++++.+|.+...+ +..+++.+.+.+..+
T Consensus 72 a~N~g~~~a~---~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~ 113 (249)
T cd02525 72 GLNIGIRNSR---GDIIIRVDAHAVYPKDYILELVEALKRTGADN 113 (249)
T ss_pred HHHHHHHHhC---CCEEEEECCCccCCHHHHHHHHHHHhcCCCCE
Confidence 7777777665 3899999999977555 588887666555444
No 280
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=81.53 E-value=22 Score=32.28 Aligned_cols=109 Identities=10% Similarity=0.061 Sum_probs=62.4
Q ss_pred ccccCCcchhHHHHHHhhHhcCC----CeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHH
Q 044626 26 AIPLAANYRLVDAVVSNCINSNI----NKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNAD 101 (429)
Q Consensus 26 Llpi~g~~plI~~~i~~l~~~gi----~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~ 101 (429)
++|.-|..-.|..+|+++.+... -+|+|+.....+...+.+.+... + ....+...... + ..|.+.
T Consensus 6 iIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~----~--~~~~i~~~~~~--~---~~G~~~ 74 (241)
T cd06427 6 LVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRL----P--SIFRVVVVPPS--Q---PRTKPK 74 (241)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhcc----C--CCeeEEEecCC--C---CCchHH
Confidence 45666654577888888876432 14555544333333444433110 0 01122222211 1 257788
Q ss_pred HHHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHhcCCceEEE
Q 044626 102 AIRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRNNKADITIV 148 (429)
Q Consensus 102 al~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~~~~~ti~ 148 (429)
++..+.+.... +.++++.+|.....+ +..+++.+.+.+.++.++
T Consensus 75 a~n~g~~~a~g---d~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 75 ACNYALAFARG---EYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred HHHHHHHhcCC---CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 88888876653 899999999987555 578888776544555443
No 281
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=80.33 E-value=33 Score=31.06 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=65.0
Q ss_pred cccccccc--cccccCCcchhHHHHHHhhHhcCC----CeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccc
Q 044626 17 PLTKRRSE--GAIPLAANYRLVDAVVSNCINSNI----NKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSL 90 (429)
Q Consensus 17 plt~~~pK--~Llpi~g~~plI~~~i~~l~~~gi----~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~ 90 (429)
+.....|+ -++|..|....|...|+.+..... -+++|+.....+...+.+++... . .+.++....
T Consensus 23 ~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~-~------~v~~i~~~~-- 93 (251)
T cd06439 23 PDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYAD-K------GVKLLRFPE-- 93 (251)
T ss_pred CCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhh-C------cEEEEEcCC--
Confidence 33344555 677887864678888888766432 25666654433334444443111 0 133332211
Q ss_pred cccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHh
Q 044626 91 EDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRN 140 (429)
Q Consensus 91 ~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~ 140 (429)
..|.+.++..+.+.... +.++++.+|.+...+ ++.+++....
T Consensus 94 -----~~g~~~a~n~gi~~a~~---d~i~~lD~D~~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 94 -----RRGKAAALNRALALATG---EIVVFTDANALLDPDALRLLVRHFAD 136 (251)
T ss_pred -----CCChHHHHHHHHHHcCC---CEEEEEccccCcCHHHHHHHHHHhcC
Confidence 15888888888777653 899999999988555 5888877653
No 282
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=79.22 E-value=25 Score=31.11 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=60.6
Q ss_pred ccccCCcchhHHHHHHhhHhcC---CCeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHH
Q 044626 26 AIPLAANYRLVDAVVSNCINSN---INKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADA 102 (429)
Q Consensus 26 Llpi~g~~plI~~~i~~l~~~g---i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~a 102 (429)
++|.-|....|..+|+.+.+.- -.+|+||-....+...+.+.+..... ..+.++.... ..|.+.+
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~-----~~i~~~~~~~-------n~G~~~a 69 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEY-----PRVRLIVRPG-------KRGLGSA 69 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhC-----CceEEEecCC-------CCChHHH
Confidence 3566665356788888876542 24566664332222333332211000 1122332211 2588888
Q ss_pred HHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHhcCCceEE
Q 044626 103 IRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRNNKADITI 147 (429)
Q Consensus 103 l~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~~~~~ti 147 (429)
+..+.+.... +.++++.+|.....+ +..+++.....+.++..
T Consensus 70 ~n~g~~~a~g---d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 112 (224)
T cd06442 70 YIEGFKAARG---DVIVVMDADLSHPPEYIPELLEAQLEGGADLVI 112 (224)
T ss_pred HHHHHHHcCC---CEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 8888877663 888999999977444 67788876555555433
No 283
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=78.67 E-value=28 Score=30.21 Aligned_cols=100 Identities=9% Similarity=0.099 Sum_probs=58.5
Q ss_pred ccccCCcc--hhHHHHHHhhHhcC--CCeEEEEeecC-hhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcH
Q 044626 26 AIPLAANY--RLVDAVVSNCINSN--INKIYALTQFN-STSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNA 100 (429)
Q Consensus 26 Llpi~g~~--plI~~~i~~l~~~g--i~~I~Iv~~~~-~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~ 100 (429)
++|+.|+. ..|..+|+.+.... -.+++|+-... .+...+.+.+..... .+.++.... + .|.+
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~------~i~~i~~~~---n----~G~~ 69 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKL------PLKVVPLEK---N----RGLG 69 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcC------CeEEEEcCc---c----ccHH
Confidence 46777651 27899999987653 24565554332 233333333311100 133332221 1 5888
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcCceeE-eccHHHHHHHHHhc
Q 044626 101 DAIRRCLWVLEEYPVTEFLILPGHHLY-KMDYQRLIEAHRNN 141 (429)
Q Consensus 101 ~al~~~~~~i~~~~~~~~lvl~gD~i~-~~~l~~~~~~~~~~ 141 (429)
.+...+...... +.++++.+|.+. ...+..+++...++
T Consensus 70 ~a~N~g~~~a~g---d~i~~lD~Dd~~~~~~l~~~~~~~~~~ 108 (201)
T cd04195 70 KALNEGLKHCTY---DWVARMDTDDISLPDRFEKQLDFIEKN 108 (201)
T ss_pred HHHHHHHHhcCC---CEEEEeCCccccCcHHHHHHHHHHHhC
Confidence 888888776653 899999999977 44568888876543
No 284
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=75.90 E-value=9.4 Score=29.69 Aligned_cols=12 Identities=17% Similarity=0.482 Sum_probs=4.7
Q ss_pred cEECCCCEEecC
Q 044626 328 TRIGDGAVIEDS 339 (429)
Q Consensus 328 ~~ig~~~~i~~~ 339 (429)
+.|+.++.+.+.
T Consensus 37 v~i~~~~~v~G~ 48 (101)
T PF04519_consen 37 VKIGGNGEVKGD 48 (101)
T ss_pred EEEcCCCEEEEE
Confidence 344444444333
No 285
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=73.16 E-value=44 Score=28.61 Aligned_cols=97 Identities=7% Similarity=0.034 Sum_probs=56.9
Q ss_pred cccCCcchhHHHHHHhhHhcCCC--eEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHHHH
Q 044626 27 IPLAANYRLVDAVVSNCINSNIN--KIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADAIR 104 (429)
Q Consensus 27 lpi~g~~plI~~~i~~l~~~gi~--~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~ 104 (429)
+|.-|....|+.+|+.+.+.... +|+|+-+...+...+.+.+... + .+.+. ... ..|.+.++.
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~----~---~~~~~--~~~------~~g~~~a~n 68 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYED----K---ITYWI--SEP------DKGIYDAMN 68 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHh----h---cEEEE--ecC------CcCHHHHHH
Confidence 45555536888999998776544 4555533223334444443111 0 01122 111 158888888
Q ss_pred HHHHHhhcCCCCeEEEEcCceeE-eccHHHHHHHHHhc
Q 044626 105 RCLWVLEEYPVTEFLILPGHHLY-KMDYQRLIEAHRNN 141 (429)
Q Consensus 105 ~~~~~i~~~~~~~~lvl~gD~i~-~~~l~~~~~~~~~~ 141 (429)
.+++..+. +.++++.+|... ...+..+++.....
T Consensus 69 ~~~~~a~~---~~v~~ld~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 69 KGIALATG---DIIGFLNSDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred HHHHHcCC---CEEEEeCCCcccCchHHHHHHHHHHhC
Confidence 88876653 899999999977 55577777544443
No 286
>PRK10073 putative glycosyl transferase; Provisional
Probab=72.48 E-value=45 Score=32.18 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=63.0
Q ss_pred cccccCCcchhHHHHHHhhHhcCCC--eEEEEeecC---hhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCc
Q 044626 25 GAIPLAANYRLVDAVVSNCINSNIN--KIYALTQFN---STSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGN 99 (429)
Q Consensus 25 ~Llpi~g~~plI~~~i~~l~~~gi~--~I~Iv~~~~---~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt 99 (429)
-.+|+.|....|..+|+++...... +|+|+-... ..++.+...+..+ .+.++ .+. . .|.
T Consensus 10 VIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~--------~i~vi--~~~--n----~G~ 73 (328)
T PRK10073 10 IIIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYP--------HVRLL--HQA--N----AGV 73 (328)
T ss_pred EEEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCC--------CEEEE--ECC--C----CCh
Confidence 3567766547899999999876433 454443221 1223333322111 23333 222 1 588
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcCceeEec-cHHHHHHHHHhcCCceEE
Q 044626 100 ADAIRRCLWVLEEYPVTEFLILPGHHLYKM-DYQRLIEAHRNNKADITI 147 (429)
Q Consensus 100 ~~al~~~~~~i~~~~~~~~lvl~gD~i~~~-~l~~~~~~~~~~~~~~ti 147 (429)
+.+.-.+++.... +.++++.+|-.... .+..+++...+.+.++.+
T Consensus 74 ~~arN~gl~~a~g---~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 74 SVARNTGLAVATG---KYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred HHHHHHHHHhCCC---CEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 8888778776663 89999999997744 467788877666666644
No 287
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=71.10 E-value=50 Score=31.10 Aligned_cols=105 Identities=14% Similarity=0.092 Sum_probs=60.5
Q ss_pred ccccCCcc-hhHHHHHHhhHhcC---C-CeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcH
Q 044626 26 AIPLAANY-RLVDAVVSNCINSN---I-NKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNA 100 (429)
Q Consensus 26 Llpi~g~~-plI~~~i~~l~~~g---i-~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~ 100 (429)
.+|.-|.. ..|..+|+.+...- . .+|+||-+...+...+.+.+... ......+.++.... ..|-+
T Consensus 3 IIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~---~~~~~~v~vi~~~~-------n~G~~ 72 (299)
T cd02510 3 IIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYY---KKYLPKVKVLRLKK-------REGLI 72 (299)
T ss_pred EEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHH---hhcCCcEEEEEcCC-------CCCHH
Confidence 35677773 48888899887542 1 36766654333322233221000 00001244443222 15777
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcCceeEec-cHHHHHHHHHhcCC
Q 044626 101 DAIRRCLWVLEEYPVTEFLILPGHHLYKM-DYQRLIEAHRNNKA 143 (429)
Q Consensus 101 ~al~~~~~~i~~~~~~~~lvl~gD~i~~~-~l~~~~~~~~~~~~ 143 (429)
.+.-.+...... +.++++++|..... -+..+++...+...
T Consensus 73 ~a~N~g~~~A~g---d~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 73 RARIAGARAATG---DVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred HHHHHHHHHccC---CEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 787777766653 89999999997744 46888888766543
No 288
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=68.84 E-value=40 Score=34.08 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=61.0
Q ss_pred cccccCCcchhHHHHHHhhHhcCC--CeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHH
Q 044626 25 GAIPLAANYRLVDAVVSNCINSNI--NKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADA 102 (429)
Q Consensus 25 ~Llpi~g~~plI~~~i~~l~~~gi--~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~a 102 (429)
-++|..|....+..+++.+.+..- -+|+++-....+...+.+++..... ..+.++.... ..|-+.+
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~-----~~v~vv~~~~-------n~Gka~A 146 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAED-----PRLRVIHLAH-------NQGKAIA 146 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhC-----CCEEEEEeCC-------CCCHHHH
Confidence 577888875678889998876532 3566665433332333332211000 1233443222 1588888
Q ss_pred HHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHhc
Q 044626 103 IRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRNN 141 (429)
Q Consensus 103 l~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~ 141 (429)
+..+....+ .+.++++.+|.+.+.+ +..+++.+.+.
T Consensus 147 lN~gl~~a~---~d~iv~lDAD~~~~~d~L~~lv~~~~~~ 183 (444)
T PRK14583 147 LRMGAAAAR---SEYLVCIDGDALLDKNAVPYLVAPLIAN 183 (444)
T ss_pred HHHHHHhCC---CCEEEEECCCCCcCHHHHHHHHHHHHhC
Confidence 888876554 3899999999988555 57777766543
No 289
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=68.66 E-value=68 Score=27.82 Aligned_cols=100 Identities=8% Similarity=0.039 Sum_probs=56.9
Q ss_pred cccCCcchhHHHHHHhhHhcCC--CeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHHHH
Q 044626 27 IPLAANYRLVDAVVSNCINSNI--NKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADAIR 104 (429)
Q Consensus 27 lpi~g~~plI~~~i~~l~~~gi--~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~ 104 (429)
+|.-|+...|..+|+.+.+... .+|+|+-+...+...+.+.+.... ..+.++.... ..|.+.++.
T Consensus 3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~------~~i~~~~~~~-------n~g~~~~~n 69 (202)
T cd04185 3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDL------DNIVYLRLPE-------NLGGAGGFY 69 (202)
T ss_pred EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCC------CceEEEECcc-------ccchhhHHH
Confidence 4445543678889999876532 366666543333444555442111 0122322111 157777777
Q ss_pred HHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHH
Q 044626 105 RCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHR 139 (429)
Q Consensus 105 ~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~ 139 (429)
.+++.......+.++++..|.+...+ +..+++...
T Consensus 70 ~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 70 EGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred HHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 77665532234799999999988555 477777665
No 290
>PRK11204 N-glycosyltransferase; Provisional
Probab=67.69 E-value=45 Score=33.21 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=60.9
Q ss_pred cccccCCcchhHHHHHHhhHhcCC--CeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHH
Q 044626 25 GAIPLAANYRLVDAVVSNCINSNI--NKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADA 102 (429)
Q Consensus 25 ~Llpi~g~~plI~~~i~~l~~~gi--~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~a 102 (429)
-++|..|....|..+++++.+... -+|+|+-....+...+.+++..... ..+.++.... ..|.+++
T Consensus 58 ViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~-----~~v~~i~~~~-------n~Gka~a 125 (420)
T PRK11204 58 ILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQI-----PRLRVIHLAE-------NQGKANA 125 (420)
T ss_pred EEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhC-----CcEEEEEcCC-------CCCHHHH
Confidence 367777765788999999876542 3566554332222333332210000 1133332111 1588889
Q ss_pred HHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHhc
Q 044626 103 IRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRNN 141 (429)
Q Consensus 103 l~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~ 141 (429)
+..+.+..+ .+.++++.+|.+...+ +..+++.+.+.
T Consensus 126 ln~g~~~a~---~d~i~~lDaD~~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 126 LNTGAAAAR---SEYLVCIDGDALLDPDAAAYMVEHFLHN 162 (420)
T ss_pred HHHHHHHcC---CCEEEEECCCCCCChhHHHHHHHHHHhC
Confidence 888887665 3899999999987555 58888877543
No 291
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=66.89 E-value=49 Score=32.69 Aligned_cols=113 Identities=12% Similarity=0.230 Sum_probs=64.9
Q ss_pred cccccCCcchhHHHHHHhhHhcCC---CeEEEEeecChh---HHHHHHhccccCcccCCCCcEEEEeccccccccCcccC
Q 044626 25 GAIPLAANYRLVDAVVSNCINSNI---NKIYALTQFNST---SLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQG 98 (429)
Q Consensus 25 ~Llpi~g~~plI~~~i~~l~~~gi---~~I~Iv~~~~~~---~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~G 98 (429)
-.+|.-|..+.|...|+.+.+... -+|+|+-+...+ ++.+.+.+.++. ...++++..... ...| .|
T Consensus 44 VIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~-----~~~i~vi~~~~~--~~g~-~G 115 (384)
T TIGR03469 44 AVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGR-----GDRLTVVSGQPL--PPGW-SG 115 (384)
T ss_pred EEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCC-----CCcEEEecCCCC--CCCC-cc
Confidence 366777765899999999977533 256666543322 333333322210 012334422111 1112 46
Q ss_pred cHHHHHHHHHHhhcCC--CCeEEEEcCceeEec-cHHHHHHHHHhcCCce
Q 044626 99 NADAIRRCLWVLEEYP--VTEFLILPGHHLYKM-DYQRLIEAHRNNKADI 145 (429)
Q Consensus 99 t~~al~~~~~~i~~~~--~~~~lvl~gD~i~~~-~l~~~~~~~~~~~~~~ 145 (429)
.+.++..+.+...... .+.++++++|..... .+..+++...+.+.++
T Consensus 116 k~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 116 KLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred hHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 6677777776665211 389999999997744 4688888777665554
No 292
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=66.29 E-value=65 Score=28.38 Aligned_cols=105 Identities=5% Similarity=0.014 Sum_probs=58.4
Q ss_pred ccccCCcchhHHHHHHhhHhcCC----CeEEEEeecChhHHHHHHh--ccccCcccCCCCcEEEEeccccccccCcccCc
Q 044626 26 AIPLAANYRLVDAVVSNCINSNI----NKIYALTQFNSTSLNLHLS--RAFSGILRGKDGFVEVIAAYQSLEDQDWFQGN 99 (429)
Q Consensus 26 Llpi~g~~plI~~~i~~l~~~gi----~~I~Iv~~~~~~~i~~~l~--~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt 99 (429)
++|..|....|..+|+.+..... -+|+|+-....+...+.+. .... . ..+.++..... ...|.
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~----~~v~~~~~~~~-----~~~g~ 70 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKP--N----FQLKILNNSRV-----SISGK 70 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCC--C----cceEEeeccCc-----ccchh
Confidence 45676764678899999866532 3565554432222333332 1111 1 12333322210 11466
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHhcCCc
Q 044626 100 ADAIRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRNNKAD 144 (429)
Q Consensus 100 ~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~~~~ 144 (429)
+.++..+.+... .+.++++.+|.+...+ +..+++.+...+..
T Consensus 71 ~~a~n~g~~~~~---~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~ 113 (229)
T cd04192 71 KNALTTAIKAAK---GDWIVTTDADCVVPSNWLLTFVAFIQKEQIG 113 (229)
T ss_pred HHHHHHHHHHhc---CCEEEEECCCcccCHHHHHHHHHHhhcCCCc
Confidence 667766665554 3899999999987555 57788766554433
No 293
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=66.21 E-value=61 Score=28.20 Aligned_cols=101 Identities=7% Similarity=0.030 Sum_probs=54.7
Q ss_pred ccccCCcchhHHHHHHhhHhcCC--CeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHHH
Q 044626 26 AIPLAANYRLVDAVVSNCINSNI--NKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADAI 103 (429)
Q Consensus 26 Llpi~g~~plI~~~i~~l~~~gi--~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al 103 (429)
++|..|+...|..+|+.+.+... -+|+|+-....+...+.+++....... .+.+..... -.|.+.++
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~----~~~~~~~~~-------~~G~~~~~ 71 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPF----IIILIRNGK-------NLGVARNF 71 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCc----eEEEEeCCC-------CccHHHHH
Confidence 46677763578889999876532 245555432222222223221100100 121221111 15777887
Q ss_pred HHHHHHhhcCCCCeEEEEcCceeEec-cHHHHHHHHHh
Q 044626 104 RRCLWVLEEYPVTEFLILPGHHLYKM-DYQRLIEAHRN 140 (429)
Q Consensus 104 ~~~~~~i~~~~~~~~lvl~gD~i~~~-~l~~~~~~~~~ 140 (429)
..+....+ .+.++++..|.++.. .+..+++...+
T Consensus 72 n~g~~~~~---g~~v~~ld~Dd~~~~~~l~~~~~~~~~ 106 (214)
T cd04196 72 ESLLQAAD---GDYVFFCDQDDIWLPDKLERLLKAFLK 106 (214)
T ss_pred HHHHHhCC---CCEEEEECCCcccChhHHHHHHHHHhc
Confidence 77765554 389999999987744 46888877433
No 294
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=64.76 E-value=89 Score=29.01 Aligned_cols=98 Identities=13% Similarity=0.037 Sum_probs=57.9
Q ss_pred hhHHHHHHhhHhcCCCeEEEEeecC--hhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHHHHHHHHHhh
Q 044626 34 RLVDAVVSNCINSNINKIYALTQFN--STSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLE 111 (429)
Q Consensus 34 plI~~~i~~l~~~gi~~I~Iv~~~~--~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~ 111 (429)
..|...|+.+.+. ..+|+||=+.. .+.+.+.+.+ .+ .+.++.... -.|-+.++-.+++...
T Consensus 8 ~~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~-~~--------~i~~i~~~~-------N~G~a~a~N~Gi~~a~ 70 (281)
T TIGR01556 8 EHLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR-GQ--------KIALIHLGD-------NQGIAGAQNQGLDASF 70 (281)
T ss_pred HHHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc-CC--------CeEEEECCC-------CcchHHHHHHHHHHHH
Confidence 3677788887764 45676664431 2234333332 11 244443221 1688999998887764
Q ss_pred cCCCCeEEEEcCceeEecc-HHHHHHHHHhcCCceEEE
Q 044626 112 EYPVTEFLILPGHHLYKMD-YQRLIEAHRNNKADITIV 148 (429)
Q Consensus 112 ~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~~~~~ti~ 148 (429)
....+.++++..|.....+ +..+++...+.+..+.++
T Consensus 71 ~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~ 108 (281)
T TIGR01556 71 RRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACAL 108 (281)
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEE
Confidence 3234899999999977444 577787766543234343
No 295
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=64.70 E-value=81 Score=27.95 Aligned_cols=100 Identities=13% Similarity=0.097 Sum_probs=57.8
Q ss_pred ccccCCcc-hhHHHHHHhhHhcCCC----eEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcH
Q 044626 26 AIPLAANY-RLVDAVVSNCINSNIN----KIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNA 100 (429)
Q Consensus 26 Llpi~g~~-plI~~~i~~l~~~gi~----~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~ 100 (429)
.+|..|.. .++...|+.+...... +|+|+-....+...+.+.+..... .+.++.... . ..+.+
T Consensus 6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~------~~~~~~~~~---~---~~~~~ 73 (234)
T cd06421 6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEY------GYRYLTRPD---N---RHAKA 73 (234)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhccc------CceEEEeCC---C---CCCcH
Confidence 45667751 3788899998875543 566665444444555554421100 122222111 1 12445
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHh
Q 044626 101 DAIRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRN 140 (429)
Q Consensus 101 ~al~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~ 140 (429)
+++..+.+... .+.++++..|.+.+.+ +..+++.+.+
T Consensus 74 ~~~n~~~~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 74 GNLNNALAHTT---GDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred HHHHHHHHhCC---CCEEEEEccccCcCccHHHHHHHHHhc
Confidence 66677776554 3899999999987555 5777777655
No 296
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=64.54 E-value=68 Score=32.34 Aligned_cols=99 Identities=12% Similarity=0.101 Sum_probs=60.7
Q ss_pred cccccCCcchhHHHHHHhhHhcCC--C--eEEEEeecChhHHHHHH---hccccCcccCCCCcEEEEeccccccccCccc
Q 044626 25 GAIPLAANYRLVDAVVSNCINSNI--N--KIYALTQFNSTSLNLHL---SRAFSGILRGKDGFVEVIAAYQSLEDQDWFQ 97 (429)
Q Consensus 25 ~Llpi~g~~plI~~~i~~l~~~gi--~--~I~Iv~~~~~~~i~~~l---~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 97 (429)
-++|.-|....|..+++.+.+... + +|+|+-+...+...+.+ .+..+ .+.+..... ..
T Consensus 53 VIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~--------~v~v~~~~~-------~~ 117 (439)
T TIGR03111 53 IIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFP--------GLSLRYMNS-------DQ 117 (439)
T ss_pred EEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCC--------CeEEEEeCC-------CC
Confidence 456777765788999999876543 2 35555433223333333 22222 122332222 15
Q ss_pred CcHHHHHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHhc
Q 044626 98 GNADAIRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRNN 141 (429)
Q Consensus 98 Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~ 141 (429)
|-+.++-.+.+... .+.++++.+|.+.+.+ ++.+++.+.+.
T Consensus 118 Gka~AlN~gl~~s~---g~~v~~~DaD~~~~~d~L~~l~~~f~~~ 159 (439)
T TIGR03111 118 GKAKALNAAIYNSI---GKYIIHIDSDGKLHKDAIKNMVTRFENN 159 (439)
T ss_pred CHHHHHHHHHHHcc---CCEEEEECCCCCcChHHHHHHHHHHHhC
Confidence 88889888887665 3889999999988555 58888877643
No 297
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=63.40 E-value=11 Score=41.61 Aligned_cols=29 Identities=7% Similarity=0.144 Sum_probs=19.7
Q ss_pred eEeCCC-CeecceEEecCcEECCCcEEecC
Q 044626 367 VGIGED-TQIKKAVIDKNARIGKNVLIINK 395 (429)
Q Consensus 367 ~~ig~~-~~i~~~~ig~~~~ig~~~~i~~~ 395 (429)
+.++++ ++|++|.|+.+++||++|+|.+.
T Consensus 343 ~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv 372 (974)
T PRK13412 343 LTAENATLWIENSHVGEGWKLASRSIITGV 372 (974)
T ss_pred cccCCCeEEEEeeEecCCeEEcCCcEEecc
Confidence 566666 33677777777777777777643
No 298
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=60.89 E-value=98 Score=26.64 Aligned_cols=99 Identities=9% Similarity=0.076 Sum_probs=55.8
Q ss_pred ccccCCcc-hhHHHHHHhhHhcCCC--eEEEEeecC-hhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHH
Q 044626 26 AIPLAANY-RLVDAVVSNCINSNIN--KIYALTQFN-STSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNAD 101 (429)
Q Consensus 26 Llpi~g~~-plI~~~i~~l~~~gi~--~I~Iv~~~~-~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~ 101 (429)
.+|.-|.. ..+..+|+.+.+.-.. +|+|+-... .....+.+...... ...+.++.... ..|.+.
T Consensus 6 ii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~-----~~~~~~~~~~~-------~~g~~~ 73 (202)
T cd04184 6 VMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQ-----DPRIKVVFREE-------NGGISA 73 (202)
T ss_pred EEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhc-----CCCEEEEEccc-------CCCHHH
Confidence 35666664 6778888888765332 565654322 22233333221000 01133332211 157778
Q ss_pred HHHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHH
Q 044626 102 AIRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHR 139 (429)
Q Consensus 102 al~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~ 139 (429)
++..+..... .+.++++..|.....+ +..+++.+.
T Consensus 74 a~n~g~~~a~---~d~i~~ld~D~~~~~~~l~~~~~~~~ 109 (202)
T cd04184 74 ATNSALELAT---GEFVALLDHDDELAPHALYEVVKALN 109 (202)
T ss_pred HHHHHHHhhc---CCEEEEECCCCcCChHHHHHHHHHHH
Confidence 8877777665 3899999999977555 578887763
No 299
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=60.72 E-value=73 Score=27.06 Aligned_cols=45 Identities=9% Similarity=0.061 Sum_probs=32.8
Q ss_pred cCcHHHHHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHhcCCce
Q 044626 97 QGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRNNKADI 145 (429)
Q Consensus 97 ~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~~~~~ 145 (429)
.|.+.++..++..... +.++++.+|.....+ +..+++. ...+.++
T Consensus 66 ~G~~~a~n~g~~~a~~---d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~ 111 (181)
T cd04187 66 FGQQAALLAGLDHARG---DAVITMDADLQDPPELIPEMLAK-WEEGYDV 111 (181)
T ss_pred CCcHHHHHHHHHhcCC---CEEEEEeCCCCCCHHHHHHHHHH-HhCCCcE
Confidence 5888898888776653 899999999977554 5777776 3344444
No 300
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=56.42 E-value=1.1e+02 Score=25.82 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=53.0
Q ss_pred cccCCcchhHHHHHHhhHhcC--CCeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHHHH
Q 044626 27 IPLAANYRLVDAVVSNCINSN--INKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADAIR 104 (429)
Q Consensus 27 lpi~g~~plI~~~i~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~ 104 (429)
+|..|+...|..+|+++.+.- ..+|+|+-....+...+.+.+.......+ .+.+. +. +. ..|.+.++.
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~---~~~~~---~~--~~--~~~~~~~~n 72 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIP---IKHVW---QE--DE--GFRKAKIRN 72 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCc---eEEEE---cC--Cc--chhHHHHHH
Confidence 566665357888999987642 34666654433333334443311101111 11111 11 10 135556666
Q ss_pred HHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHH
Q 044626 105 RCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAH 138 (429)
Q Consensus 105 ~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~ 138 (429)
.+.+... .+.++++.+|.+...+ +..+++.+
T Consensus 73 ~g~~~a~---g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 73 KAIAAAK---GDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHhc---CCEEEEEcCCcccCHHHHHHHHHHh
Confidence 6666555 3899999999977555 47677655
No 301
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=56.16 E-value=22 Score=32.11 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=48.9
Q ss_pred eEEEEEcCC---CCCCcccc-cccccccccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCC
Q 044626 2 VAAVVFGDG---SESRLYPL-TKRRSEGAIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGK 77 (429)
Q Consensus 2 m~avIla~G---~gsRl~pl-t~~~pK~Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 77 (429)
|++||+.-. .-|||.|. +...-..| -. -|+..++..+.. ++ +++++.. +.+.+.-... ++
T Consensus 1 m~~VIPvK~~~~aKSRLs~~L~~~eR~~L----a~-aMl~Dvl~al~~--v~-v~vVs~d--~~v~~~a~~~---~g--- 64 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPVLSPEEREAL----AL-AMLRDVLAALRA--VD-VVVVSRD--PEVAALARAR---LG--- 64 (217)
T ss_dssp -EEEEE---TT-TTGGGTTTS-HHHHHHH----HH-HHHHHHHHHHHH---S-EEEEES----S-TTTTT------S---
T ss_pred CeEEEEcCCCCccccccCccCCHHHHHHH----HH-HHHHHHHHHHHh--cC-eEEeccc--hhhhhhhhhc---cC---
Confidence 788888744 44788753 21111111 13 688899999877 66 6666642 1121111100 12
Q ss_pred CCcEEEEeccccccccCcccCcHHHHHHHHHHhhcCCCCeEEEEcCce--eEeccHHHHHHHH
Q 044626 78 DGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYPVTEFLILPGHH--LYKMDYQRLIEAH 138 (429)
Q Consensus 78 ~~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~lvl~gD~--i~~~~l~~~~~~~ 138 (429)
++++.... .|--.++..+..... .++++++++|+ +...++..+++..
T Consensus 65 ---~~vl~d~~--------~gLN~Al~~a~~~~~---~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 65 ---AEVLPDPG--------RGLNAALNAALAAAG---DDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp ---SEEEE-----------S-HHHHHHHHHH-H-----S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred ---CeEecCCC--------CCHHHHHHHHHhccC---CCceEEeecCCccCCHHHHHHHHhcc
Confidence 33442221 355567777633333 38999999999 5588888888764
No 302
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=56.00 E-value=1.5e+02 Score=26.34 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=52.8
Q ss_pred cccCCcc-hhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHHHHH
Q 044626 27 IPLAANY-RLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADAIRR 105 (429)
Q Consensus 27 lpi~g~~-plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~ 105 (429)
+|.-|.. ..|..+|+.+.+. ..+|+|+=+...+........ .. ..+.++.... ..|-+.+...
T Consensus 3 I~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~-~~-------~~i~~i~~~~-------n~G~~~a~N~ 66 (237)
T cd02526 3 VVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRL-NS-------EKIELIHLGE-------NLGIAKALNI 66 (237)
T ss_pred EEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhc-cC-------CcEEEEECCC-------ceehHHhhhH
Confidence 4444554 6788888888766 556666543322222221111 01 1133332221 1588888888
Q ss_pred HHHHhhcCCCCeEEEEcCceeEecc-HHHHH
Q 044626 106 CLWVLEEYPVTEFLILPGHHLYKMD-YQRLI 135 (429)
Q Consensus 106 ~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~ 135 (429)
+.+.......+.++++.+|.....+ +..++
T Consensus 67 g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 67 GIKAALENGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred HHHHHHhCCCCEEEEECCCCCcCHhHHHHHH
Confidence 8777653234899999999987555 56664
No 303
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=53.97 E-value=1.2e+02 Score=25.41 Aligned_cols=15 Identities=13% Similarity=0.344 Sum_probs=7.4
Q ss_pred cEECCCCEEecCeEE
Q 044626 328 TRIGDGAVIEDSVIM 342 (429)
Q Consensus 328 ~~ig~~~~i~~~~~~ 342 (429)
+.|++...|++.+..
T Consensus 58 iiv~~~g~V~gei~a 72 (146)
T COG1664 58 IVVGESGRVEGEIEA 72 (146)
T ss_pred EEECCccEEEEEEEe
Confidence 555555555444433
No 304
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=53.81 E-value=1.4e+02 Score=25.44 Aligned_cols=100 Identities=11% Similarity=0.107 Sum_probs=58.0
Q ss_pred ccccCCcchhHHHHHHhhHhcCC----CeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHH
Q 044626 26 AIPLAANYRLVDAVVSNCINSNI----NKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNAD 101 (429)
Q Consensus 26 Llpi~g~~plI~~~i~~l~~~gi----~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~ 101 (429)
++|..|....|..+|+.+.+... -+|+|+.....+...+.+.+. +. .+...... . ..|.+.
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~----~~------~~~~~~~~--~---~~gk~~ 66 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA----GA------TVLERHDP--E---RRGKGY 66 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc----CC------eEEEeCCC--C---CCCHHH
Confidence 46777754688888888876432 346555543333344444331 11 12111111 0 147888
Q ss_pred HHHHHHHHhh--cCCCCeEEEEcCceeEecc-HHHHHHHHHh
Q 044626 102 AIRRCLWVLE--EYPVTEFLILPGHHLYKMD-YQRLIEAHRN 140 (429)
Q Consensus 102 al~~~~~~i~--~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~ 140 (429)
++..+..... ....+.++++.+|.....+ +..+++.+..
T Consensus 67 aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 67 ALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 8888877663 1123789999999988555 5777777654
No 305
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=53.55 E-value=1.2e+02 Score=26.93 Aligned_cols=98 Identities=10% Similarity=0.125 Sum_probs=55.9
Q ss_pred ccccCCcch-hHHHHHHhhHhcCC--CeEEEEeecCh-hH----HHHHHhccccCcccCCCCcEEEEeccccccccCccc
Q 044626 26 AIPLAANYR-LVDAVVSNCINSNI--NKIYALTQFNS-TS----LNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQ 97 (429)
Q Consensus 26 Llpi~g~~p-lI~~~i~~l~~~gi--~~I~Iv~~~~~-~~----i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 97 (429)
++|.-|..| +|...|+.+.+... -+|+|+-+... .. +.++..+ . +. .+.++.... ..
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~-~---~~----~i~~i~~~~-------~~ 67 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQ-L---GE----RFRFFHVEP-------LP 67 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHH-h---CC----cEEEEEcCC-------CC
Confidence 467777633 79999999987643 35655543322 21 2233322 1 11 122332221 13
Q ss_pred C-cHHHHHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHH
Q 044626 98 G-NADAIRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHR 139 (429)
Q Consensus 98 G-t~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~ 139 (429)
| .++++..+.+..... .+.++++.+|.....+ +..++..+.
T Consensus 68 G~~~~a~n~g~~~a~~~-~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 68 GAKAGALNYALERTAPD-AEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred CCchHHHHHHHHhcCCC-CCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 5 367777777665421 2799999999977444 577877764
No 306
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=53.33 E-value=1.5e+02 Score=26.16 Aligned_cols=104 Identities=9% Similarity=0.091 Sum_probs=54.9
Q ss_pred cccCCcchhHHHHHHhhHhcCC---CeEEEEeecChh---HHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcH
Q 044626 27 IPLAANYRLVDAVVSNCINSNI---NKIYALTQFNST---SLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNA 100 (429)
Q Consensus 27 lpi~g~~plI~~~i~~l~~~gi---~~I~Iv~~~~~~---~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~ 100 (429)
+|..|....|..+|+.+..... -+|+|+-....+ .+.+.+.+..+. ..+.++..... .++..|-+
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~------~~~~~~~~~~~---~~~~~G~~ 73 (219)
T cd06913 3 LPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLED------SGVIVLVGSHN---SPSPKGVG 73 (219)
T ss_pred EeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcc------cCeEEEEeccc---CCCCccHH
Confidence 5565553688889999876532 256555432222 222222211110 01222211110 01124777
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcCceeE-eccHHHHHHHHHhcC
Q 044626 101 DAIRRCLWVLEEYPVTEFLILPGHHLY-KMDYQRLIEAHRNNK 142 (429)
Q Consensus 101 ~al~~~~~~i~~~~~~~~lvl~gD~i~-~~~l~~~~~~~~~~~ 142 (429)
.+.-.+.+... .+.++++.+|.+. +..+..++....+..
T Consensus 74 ~a~N~g~~~a~---gd~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 74 YAKNQAIAQSS---GRYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred HHHHHHHHhcC---CCEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 77766665554 3899999999977 545677777665544
No 307
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=51.03 E-value=1.7e+02 Score=25.56 Aligned_cols=94 Identities=16% Similarity=0.067 Sum_probs=54.0
Q ss_pred ccccCCcchhHHHHHHhhHhcC--CCeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHHH
Q 044626 26 AIPLAANYRLVDAVVSNCINSN--INKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADAI 103 (429)
Q Consensus 26 Llpi~g~~plI~~~i~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al 103 (429)
++|.-|..+.|...|+.+.+.- ..+|+|+-+...+...+.+.+ .. +.+. .. ..|-+.++
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~-~~---------~~~~--~~-------~~g~~~a~ 64 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS-AG---------VVVI--SS-------PKGRARQM 64 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc-CC---------eEEE--eC-------CcCHHHHH
Confidence 4566665357888888887643 245666543333334444443 11 2222 21 14666777
Q ss_pred HHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHhc
Q 044626 104 RRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRNN 141 (429)
Q Consensus 104 ~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~ 141 (429)
-.+.+... .+.+++++.|.....+ +..++......
T Consensus 65 n~g~~~a~---~~~i~~~D~D~~~~~~~l~~l~~~~~~~ 100 (221)
T cd02522 65 NAGAAAAR---GDWLLFLHADTRLPPDWDAAIIETLRAD 100 (221)
T ss_pred HHHHHhcc---CCEEEEEcCCCCCChhHHHHHHHHhhcC
Confidence 66766665 3899999999977544 46665554443
No 308
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=50.31 E-value=1e+02 Score=30.64 Aligned_cols=106 Identities=12% Similarity=0.092 Sum_probs=67.8
Q ss_pred cccccCCcch-hHHHHHHhhHhcCCC--eEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHH
Q 044626 25 GAIPLAANYR-LVDAVVSNCINSNIN--KIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNAD 101 (429)
Q Consensus 25 ~Llpi~g~~p-lI~~~i~~l~~~gi~--~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~ 101 (429)
-++|.-|..+ .++.+++.+.+.... +|+++.....+...+.+.+.....+ ..+.+...... ..|.+.
T Consensus 58 viiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~------~~gK~~ 127 (439)
T COG1215 58 VIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYG----PNFRVIYPEKK------NGGKAG 127 (439)
T ss_pred EEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcC----cceEEEecccc------CccchH
Confidence 4677788767 899999999887643 6777765444555555544221111 01223211011 257788
Q ss_pred HHHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHhcCC
Q 044626 102 AIRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRNNKA 143 (429)
Q Consensus 102 al~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~~~ 143 (429)
++..++...+ .+-++++.+|.+...+ +..++..+...+.
T Consensus 128 al~~~l~~~~---~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 128 ALNNGLKRAK---GDVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred HHHHHHhhcC---CCEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 9998887665 3899999999988555 5888887765443
No 309
>PRK10018 putative glycosyl transferase; Provisional
Probab=50.28 E-value=2.2e+02 Score=26.69 Aligned_cols=98 Identities=5% Similarity=0.064 Sum_probs=57.6
Q ss_pred ccccCCcchhHHHHHHhhHhcCCC--eEEEEeecC--hhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHH
Q 044626 26 AIPLAANYRLVDAVVSNCINSNIN--KIYALTQFN--STSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNAD 101 (429)
Q Consensus 26 Llpi~g~~plI~~~i~~l~~~gi~--~I~Iv~~~~--~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~ 101 (429)
.+|..|....|..+|+.+.+.... +|+|+-... .+.+.+++.+. . . ..+.++.... ..|.+.
T Consensus 10 Iip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~-~---~---~ri~~i~~~~-------n~G~~~ 75 (279)
T PRK10018 10 YMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTAL-N---D---PRITYIHNDI-------NSGACA 75 (279)
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHc-C---C---CCEEEEECCC-------CCCHHH
Confidence 456666646788899988765444 454443211 12344444431 1 1 1233332221 158888
Q ss_pred HHHHHHHHhhcCCCCeEEEEcCceeE-eccHHHHHHHHHh
Q 044626 102 AIRRCLWVLEEYPVTEFLILPGHHLY-KMDYQRLIEAHRN 140 (429)
Q Consensus 102 al~~~~~~i~~~~~~~~lvl~gD~i~-~~~l~~~~~~~~~ 140 (429)
+.-.+.+.... +.++++.+|... +..+..+++...+
T Consensus 76 a~N~gi~~a~g---~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 76 VRNQAIMLAQG---EYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HHHHHHHHcCC---CEEEEECCCCCCCccHHHHHHHHHHh
Confidence 87777776653 899999999977 4457777776554
No 310
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=50.13 E-value=96 Score=23.88 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=15.9
Q ss_pred eEeCCCCeecceEEecCcEECCCcEEe
Q 044626 367 VGIGEDTQIKKAVIDKNARIGKNVLII 393 (429)
Q Consensus 367 ~~ig~~~~i~~~~ig~~~~ig~~~~i~ 393 (429)
+.|...+.+.+.+-.+...|.+++.+.
T Consensus 70 v~i~~~~~v~G~i~~~~l~v~~ga~i~ 96 (101)
T PF04519_consen 70 VEIYGTARVEGDITAGKLEVEGGASIN 96 (101)
T ss_pred EEEeCCEEEEEEEEECEEEEeCCCEEE
Confidence 456666666655555556666666553
No 311
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=49.28 E-value=1.4e+02 Score=28.46 Aligned_cols=109 Identities=10% Similarity=0.068 Sum_probs=58.9
Q ss_pred ccccCCcchhHHHHHHhhHhc----CCCeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHH
Q 044626 26 AIPLAANYRLVDAVVSNCINS----NINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNAD 101 (429)
Q Consensus 26 Llpi~g~~plI~~~i~~l~~~----gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~ 101 (429)
.+|.-|....|..+|+.+.+. ...+|+|+-....+...+.+.+. +.+.-....++.... . ..|.+.
T Consensus 36 VIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~----~~~v~~~~~~~~~~~--~----n~Gkg~ 105 (306)
T PRK13915 36 VLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAA----GARVVSREEILPELP--P----RPGKGE 105 (306)
T ss_pred EEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHh----cchhhcchhhhhccc--c----CCCHHH
Confidence 456666546778888887652 23577666533333333333331 111000000110000 0 158888
Q ss_pred HHHHHHHHhhcCCCCeEEEEcCcee-Eec-cHHHHHHHHHh-cCCceEE
Q 044626 102 AIRRCLWVLEEYPVTEFLILPGHHL-YKM-DYQRLIEAHRN-NKADITI 147 (429)
Q Consensus 102 al~~~~~~i~~~~~~~~lvl~gD~i-~~~-~l~~~~~~~~~-~~~~~ti 147 (429)
++..+..... .+.++++.+|.. .+. .+..+++.... .+.+++.
T Consensus 106 A~~~g~~~a~---gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~ 151 (306)
T PRK13915 106 ALWRSLAATT---GDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVK 151 (306)
T ss_pred HHHHHHHhcC---CCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEE
Confidence 9888776554 389999999996 544 46888887653 3444444
No 312
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=48.95 E-value=1.6e+02 Score=32.51 Aligned_cols=104 Identities=12% Similarity=0.131 Sum_probs=61.0
Q ss_pred cccccCCcch--hHHHHHHhhHhcC--CC--eEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccC
Q 044626 25 GAIPLAANYR--LVDAVVSNCINSN--IN--KIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQG 98 (429)
Q Consensus 25 ~Llpi~g~~p--lI~~~i~~l~~~g--i~--~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~G 98 (429)
-++|..|. + ++..++..+.+.. -+ +|+|+-....+...+..++ .+ +.++ ... .. .-+
T Consensus 264 ViIPtYNE-~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~----~~------v~yI--~R~-~n---~~g 326 (852)
T PRK11498 264 IFVPTYNE-DLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQE----VG------VKYI--ARP-TH---EHA 326 (852)
T ss_pred EEEecCCC-cHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHH----CC------cEEE--EeC-CC---Ccc
Confidence 46788887 6 5777888776532 12 4666543334445544443 11 2222 111 01 136
Q ss_pred cHHHHHHHHHHhhcCCCCeEEEEcCceeEeccH-HHHHHHHHhcCCceEEEE
Q 044626 99 NADAIRRCLWVLEEYPVTEFLILPGHHLYKMDY-QRLIEAHRNNKADITIVA 149 (429)
Q Consensus 99 t~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~l-~~~~~~~~~~~~~~ti~~ 149 (429)
.++++-.+++..+ .+.++++++|.+...++ +.++..+.+. ..+.++.
T Consensus 327 KAGnLN~aL~~a~---GEyIavlDAD~ip~pdfL~~~V~~f~~d-P~VglVQ 374 (852)
T PRK11498 327 KAGNINNALKYAK---GEFVAIFDCDHVPTRSFLQMTMGWFLKD-KKLAMMQ 374 (852)
T ss_pred hHHHHHHHHHhCC---CCEEEEECCCCCCChHHHHHHHHHHHhC-CCeEEEE
Confidence 6788888887665 39999999999886665 6677665443 3344443
No 313
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=48.36 E-value=2.3e+02 Score=27.20 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=34.7
Q ss_pred cCcHHHHHHHHHHhhcCCCCeEEEEcCceeE-eccHHHHHHHHHhcCCceE
Q 044626 97 QGNADAIRRCLWVLEEYPVTEFLILPGHHLY-KMDYQRLIEAHRNNKADIT 146 (429)
Q Consensus 97 ~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~-~~~l~~~~~~~~~~~~~~t 146 (429)
.|.+.++..+.+.... +.++++.+|... ...+..+++... .+.+++
T Consensus 76 ~G~~~A~~~G~~~A~g---d~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 76 YGQHSAIMAGFSHVTG---DLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred CCHHHHHHHHHHhCCC---CEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 5888899988877653 899999999977 445688888765 345643
No 314
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=46.77 E-value=2.1e+02 Score=25.50 Aligned_cols=95 Identities=8% Similarity=0.036 Sum_probs=57.4
Q ss_pred ccccCCcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHHHHH
Q 044626 26 AIPLAANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADAIRR 105 (429)
Q Consensus 26 Llpi~g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~ 105 (429)
++|.-|....|..+|+.+... .++|+|+-+...+...+.+++ .+ +.+... . ..|-+.+...
T Consensus 5 ii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~----~~------~~v~~~-~-------~~g~~~~~n~ 65 (229)
T cd02511 5 VIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKE----YG------AKVYQR-W-------WDGFGAQRNF 65 (229)
T ss_pred EEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHH----cC------CEEEEC-C-------CCChHHHHHH
Confidence 456666546788888888654 368877765433334443432 12 223322 1 1577777777
Q ss_pred HHHHhhcCCCCeEEEEcCceeEeccH-HHHHHHHHhcC
Q 044626 106 CLWVLEEYPVTEFLILPGHHLYKMDY-QRLIEAHRNNK 142 (429)
Q Consensus 106 ~~~~i~~~~~~~~lvl~gD~i~~~~l-~~~~~~~~~~~ 142 (429)
+++.... +-++++.+|.+...++ ..+.+...+.+
T Consensus 66 ~~~~a~~---d~vl~lDaD~~~~~~~~~~l~~~~~~~~ 100 (229)
T cd02511 66 ALELATN---DWVLSLDADERLTPELADEILALLATDD 100 (229)
T ss_pred HHHhCCC---CEEEEEeCCcCcCHHHHHHHHHHHhCCC
Confidence 7766653 7999999999886664 55666554433
No 315
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=45.44 E-value=65 Score=28.56 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=51.7
Q ss_pred ccccCCcchhHHHHHHhhHhcC--CCeEEEEeecChhH---HHHHHhccccCcccCCCCcEEEEeccccccccCcccCcH
Q 044626 26 AIPLAANYRLVDAVVSNCINSN--INKIYALTQFNSTS---LNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNA 100 (429)
Q Consensus 26 Llpi~g~~plI~~~i~~l~~~g--i~~I~Iv~~~~~~~---i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~ 100 (429)
++|..|+.+.|..+|+.+.+.. --+|+|+.....+. ..+.+...++. ..+.++...... . +.+.+
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~------~~v~vi~~~~~~-g---~~~k~ 75 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPR------VRVRVIRRPRNP-G---PGGKA 75 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-------GEEEEE----H-H---HHHHH
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCC------CceEEeecCCCC-C---cchHH
Confidence 5677766578888999887642 24455555433222 22222222221 113344322110 0 12356
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHhcC
Q 044626 101 DAIRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRNNK 142 (429)
Q Consensus 101 ~al~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~~ 142 (429)
.++..+++... .+.++++..|.+...+ +..+++.+...+
T Consensus 76 ~a~n~~~~~~~---~d~i~~lD~D~~~~p~~l~~~~~~~~~~~ 115 (228)
T PF13641_consen 76 RALNEALAAAR---GDYILFLDDDTVLDPDWLERLLAAFADPG 115 (228)
T ss_dssp HHHHHHHHH------SEEEEE-SSEEE-CHHHHHHHHHHHBSS
T ss_pred HHHHHHHHhcC---CCEEEEECCCcEECHHHHHHHHHHHHhCC
Confidence 67777776665 3899999999988555 577888773333
No 316
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=45.44 E-value=1.9e+02 Score=27.84 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=33.6
Q ss_pred cCcHHHHHHHHHHhhcCCCCeEEEEcCceeE-eccHHHHHHHHHh---cCCceEE
Q 044626 97 QGNADAIRRCLWVLEEYPVTEFLILPGHHLY-KMDYQRLIEAHRN---NKADITI 147 (429)
Q Consensus 97 ~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~-~~~l~~~~~~~~~---~~~~~ti 147 (429)
.|.+.++..+...... +.++++.+|... ..++..+++...+ .+.++++
T Consensus 148 ~G~~~A~~~Gi~~a~g---d~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~ 199 (333)
T PTZ00260 148 KGKGGAVRIGMLASRG---KYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVF 199 (333)
T ss_pred CChHHHHHHHHHHccC---CEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEE
Confidence 5899999988876553 889999999966 4456777766543 3444433
No 317
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=42.95 E-value=2.2e+02 Score=24.55 Aligned_cols=100 Identities=8% Similarity=0.036 Sum_probs=50.8
Q ss_pred ccccCCcchhHHHHHHhhHhcC--CCeEEEEeecChhH---HHHHHhccccCcccCCCCcEEEEeccccccccCcccCcH
Q 044626 26 AIPLAANYRLVDAVVSNCINSN--INKIYALTQFNSTS---LNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNA 100 (429)
Q Consensus 26 Llpi~g~~plI~~~i~~l~~~g--i~~I~Iv~~~~~~~---i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~ 100 (429)
++|+.|..+-|...|+++.+.. --+|+||.....+. +.+.+.+.++. . .+.++...... . ..+.+
T Consensus 6 iip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~--~----~~~~~~~~~~~-g---~~~~~ 75 (196)
T cd02520 6 LKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPN--V----DARLLIGGEKV-G---INPKV 75 (196)
T ss_pred EEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCC--C----cEEEEecCCcC-C---CCHhH
Confidence 4677665467888888887642 23566555433222 22222222221 0 12233222110 0 01223
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHH
Q 044626 101 DAIRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAH 138 (429)
Q Consensus 101 ~al~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~ 138 (429)
.++..+.+... .+.++++.+|.....+ +..+++..
T Consensus 76 ~~~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 76 NNLIKGYEEAR---YDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HHHHHHHHhCC---CCEEEEECCCceEChhHHHHHHHHh
Confidence 44545555444 3899999999977554 57777654
No 318
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=42.19 E-value=1.9e+02 Score=28.26 Aligned_cols=102 Identities=8% Similarity=0.033 Sum_probs=56.9
Q ss_pred ccccCCcchhHHHHHHhhHhcCC--CeEEEEeecChh---HHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcH
Q 044626 26 AIPLAANYRLVDAVVSNCINSNI--NKIYALTQFNST---SLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNA 100 (429)
Q Consensus 26 Llpi~g~~plI~~~i~~l~~~gi--~~I~Iv~~~~~~---~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~ 100 (429)
++|..|..+.|...|+.+.+..- -+|+++.....+ ++.+.+.+.++. ..++++...+. ..| .+..
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~------~~i~~v~~~~~---~G~-~~K~ 115 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPD------ADIDLVIDARR---HGP-NRKV 115 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCC------CceEEEECCCC---CCC-ChHH
Confidence 77887776889999999877543 356555433222 333334333321 11333321111 111 2334
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHh
Q 044626 101 DAIRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRN 140 (429)
Q Consensus 101 ~al~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~ 140 (429)
.++.++.+..+ .+.++++.+|.....+ ++.++..+..
T Consensus 116 ~~l~~~~~~a~---ge~i~~~DaD~~~~p~~L~~lv~~~~~ 153 (373)
T TIGR03472 116 SNLINMLPHAR---HDILVIADSDISVGPDYLRQVVAPLAD 153 (373)
T ss_pred HHHHHHHHhcc---CCEEEEECCCCCcChhHHHHHHHHhcC
Confidence 45555544444 3899999999977555 5777776643
No 319
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=41.57 E-value=2.8e+02 Score=26.22 Aligned_cols=103 Identities=13% Similarity=0.065 Sum_probs=59.7
Q ss_pred cCCcchhHHHHHHhhHhcCCCeEEE--EeecChhHHHHHHhcc-ccCcccCCCCcEEEEeccccccccCcccCcHHHHHH
Q 044626 29 LAANYRLVDAVVSNCINSNINKIYA--LTQFNSTSLNLHLSRA-FSGILRGKDGFVEVIAAYQSLEDQDWFQGNADAIRR 105 (429)
Q Consensus 29 i~g~~plI~~~i~~l~~~gi~~I~I--v~~~~~~~i~~~l~~~-~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~ 105 (429)
.... .-+...++.|.+.......+ +-+...+...+.+++. ++ .+.++.... + +|-|++...
T Consensus 12 yn~~-~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~~~--------~v~~i~~~~---N----lG~agg~n~ 75 (305)
T COG1216 12 YNRG-EDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARFFP--------NVRLIENGE---N----LGFAGGFNR 75 (305)
T ss_pred cCCH-HHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhcCC--------cEEEEEcCC---C----ccchhhhhH
Confidence 3444 67778888887765433333 3333333444555443 22 233442221 2 577777776
Q ss_pred HHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHhcCCceEE
Q 044626 106 CLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRNNKADITI 147 (429)
Q Consensus 106 ~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~~~~~~ti 147 (429)
+.........+.+++++-|++...+ +.++++.+.+.+..+.+
T Consensus 76 g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~ 118 (305)
T COG1216 76 GIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVV 118 (305)
T ss_pred HHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEe
Confidence 6655543221269999999877555 58899998887655533
No 320
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=37.84 E-value=2.3e+02 Score=23.81 Aligned_cols=27 Identities=7% Similarity=0.147 Sum_probs=16.1
Q ss_pred eEeCCCCeecceEEecCcEECCCcEEe
Q 044626 367 VGIGEDTQIKKAVIDKNARIGKNVLII 393 (429)
Q Consensus 367 ~~ig~~~~i~~~~ig~~~~ig~~~~i~ 393 (429)
++|...+++.+-+=++...|..|+.+.
T Consensus 91 Vei~~~g~v~GdI~~~~i~v~~Ga~f~ 117 (146)
T COG1664 91 VELYPGGRVIGDITTKEITVEEGAIFE 117 (146)
T ss_pred EEEcCCcEEeeeecccEEEEccCCEEE
Confidence 566666666555555555666666554
No 321
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=36.15 E-value=1.6e+02 Score=29.02 Aligned_cols=79 Identities=18% Similarity=0.075 Sum_probs=41.4
Q ss_pred HHHhhHhcC-CCeEEEEeecCh--hHHHHHHhccccCcccCC-CCcEEEEeccccccccCcccCcHHHHHHHHHHhhcCC
Q 044626 39 VVSNCINSN-INKIYALTQFNS--TSLNLHLSRAFSGILRGK-DGFVEVIAAYQSLEDQDWFQGNADAIRRCLWVLEEYP 114 (429)
Q Consensus 39 ~i~~l~~~g-i~~I~Iv~~~~~--~~i~~~l~~~~~~~~~~~-~~~v~i~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~ 114 (429)
++..|.+.+ ++.++++|+.+. +....++.. ++++. ++.+++....++ ...-|+.++....+.+.+.
T Consensus 22 li~~~~~~~~~~~~vi~TGQH~d~em~~~~le~----~~i~~pdy~L~i~~~~~t-----l~~~t~~~i~~~~~vl~~~- 91 (383)
T COG0381 22 LVKALEKDPDFELIVIHTGQHRDYEMLDQVLEL----FGIRKPDYDLNIMKPGQT-----LGEITGNIIEGLSKVLEEE- 91 (383)
T ss_pred HHHHHHhCCCCceEEEEecccccHHHHHHHHHH----hCCCCCCcchhccccCCC-----HHHHHHHHHHHHHHHHHhh-
Confidence 445566665 899999998775 555555544 33432 233333311221 0122333333333333332
Q ss_pred CCeEEEEcCceeE
Q 044626 115 VTEFLILPGHHLY 127 (429)
Q Consensus 115 ~~~~lvl~gD~i~ 127 (429)
..+.+++.||+-.
T Consensus 92 kPD~VlVhGDT~t 104 (383)
T COG0381 92 KPDLVLVHGDTNT 104 (383)
T ss_pred CCCEEEEeCCcch
Confidence 3689999999844
No 322
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=34.13 E-value=4e+02 Score=28.87 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHHHh
Q 044626 98 GNADAIRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAHRN 140 (429)
Q Consensus 98 Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~~~ 140 (429)
+.++++..+++..+. +.++++.+|.+...+ ++.++..+.+
T Consensus 215 ~KAgnLN~al~~a~g---d~Il~lDAD~v~~pd~L~~~v~~f~~ 255 (713)
T TIGR03030 215 AKAGNINNALKHTDG---ELILIFDADHVPTRDFLQRTVGWFVE 255 (713)
T ss_pred CChHHHHHHHHhcCC---CEEEEECCCCCcChhHHHHHHHHHHh
Confidence 557888888776653 899999999988666 4777777654
No 323
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=31.71 E-value=2.4e+02 Score=24.95 Aligned_cols=97 Identities=11% Similarity=0.124 Sum_probs=51.1
Q ss_pred ccccCCcchhHHHHHHhhHhcCC--C--eEEEEeecChhH----HHHHHhccccCcccCCCCcEEEEeccccccccCccc
Q 044626 26 AIPLAANYRLVDAVVSNCINSNI--N--KIYALTQFNSTS----LNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQ 97 (429)
Q Consensus 26 Llpi~g~~plI~~~i~~l~~~gi--~--~I~Iv~~~~~~~----i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 97 (429)
.+|.-|....|..+|+.+.+... . +|+|+-+ ..+. +++.+.+ +...+. .+..+.... ..
T Consensus 6 iIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~-~~~~~~----~i~~~~~~~-------~~ 72 (232)
T cd06437 6 QLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEE-YAAQGV----NIKHVRRAD-------RT 72 (232)
T ss_pred EEecCCcHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHH-HhhcCC----ceEEEECCC-------CC
Confidence 45666654788999999876432 1 3444433 2222 3333222 110011 122221111 13
Q ss_pred C-cHHHHHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHHHH
Q 044626 98 G-NADAIRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIEAH 138 (429)
Q Consensus 98 G-t~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~~~ 138 (429)
| .+.++..+.+..+ .+.++++.+|.+...+ +..+...+
T Consensus 73 G~k~~a~n~g~~~a~---~~~i~~~DaD~~~~~~~l~~~~~~~ 112 (232)
T cd06437 73 GYKAGALAEGMKVAK---GEYVAIFDADFVPPPDFLQKTPPYF 112 (232)
T ss_pred CCchHHHHHHHHhCC---CCEEEEEcCCCCCChHHHHHhhhhh
Confidence 5 4667777776665 3899999999987555 46654443
No 324
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=26.37 E-value=1.1e+02 Score=21.84 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=27.3
Q ss_pred CcchhHHHHHHhhHhcCCCeEEEEeecChhHHHHHH
Q 044626 31 ANYRLVDAVVSNCINSNINKIYALTQFNSTSLNLHL 66 (429)
Q Consensus 31 g~~plI~~~i~~l~~~gi~~I~Iv~~~~~~~i~~~l 66 (429)
|+ .|++++++.+.+.|++.+.+.+........+..
T Consensus 43 g~-~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~ 77 (83)
T PF00583_consen 43 GS-KLLQAAEEWARKRGIKRIYLDVSPDNPAARRFY 77 (83)
T ss_dssp HH-HHHHHHHHHHHHTTESEEEEEEETTGHHHHHHH
T ss_pred ch-hhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHH
Confidence 45 799999999999999999998876655443433
No 325
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=25.13 E-value=94 Score=25.05 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=20.3
Q ss_pred CcchhHHHHHHhhHhcCCCeEEEE
Q 044626 31 ANYRLVDAVVSNCINSNINKIYAL 54 (429)
Q Consensus 31 g~~plI~~~i~~l~~~gi~~I~Iv 54 (429)
+. |-++..++.|.+.|.++|+|+
T Consensus 44 ~~-P~l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 44 NE-PTIPEALKKLIGTGADKIIVV 66 (126)
T ss_pred CC-CCHHHHHHHHHHcCCCEEEEE
Confidence 56 999999999999999998775
No 326
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=24.29 E-value=92 Score=23.62 Aligned_cols=43 Identities=7% Similarity=0.136 Sum_probs=30.1
Q ss_pred cccCCcchhHHHHHHhhHh--cCCCeEEEEeecC----hhHHHHHHhccc
Q 044626 27 IPLAANYRLVDAVVSNCIN--SNINKIYALTQFN----STSLNLHLSRAF 70 (429)
Q Consensus 27 lpi~g~~plI~~~i~~l~~--~gi~~I~Iv~~~~----~~~i~~~l~~~~ 70 (429)
+-||++ |+..|++.-+.. .|.++|.|-..-+ +-.+.+-+.+.+
T Consensus 4 i~vG~K-PvmnYVlavlt~fn~g~~eV~iKarG~aIskAVdvaeiik~r~ 52 (87)
T TIGR00285 4 VYIGNK-PVMNYVLAVLTQLNSGADEVIIKARGRAISRAVDVAEIVRNRF 52 (87)
T ss_pred EEEcCC-cHHHHHHHHHHHHhCCCCeEEEEEecchhhhHHHHHHHHHHhc
Confidence 457899 999999999864 5799998866432 234555555543
No 327
>PRK10063 putative glycosyl transferase; Provisional
Probab=21.97 E-value=6.1e+02 Score=23.08 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=50.0
Q ss_pred ccCCcchhHHHHHHhhHhc----CC-CeEEEEeecChhHHHHHHhccccCcccCCCCcEEEEeccccccccCcccCcHHH
Q 044626 28 PLAANYRLVDAVVSNCINS----NI-NKIYALTQFNSTSLNLHLSRAFSGILRGKDGFVEVIAAYQSLEDQDWFQGNADA 102 (429)
Q Consensus 28 pi~g~~plI~~~i~~l~~~----gi-~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~a 102 (429)
|.-|....|..+|+.+... +. -+++|+=+...+...+.+++... + ..+.++. +. + .|.+.+
T Consensus 8 ~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~----~--~~i~~i~--~~--~----~G~~~A 73 (248)
T PRK10063 8 VAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNG----I--FNLRFVS--EP--D----NGIYDA 73 (248)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcc----c--CCEEEEE--CC--C----CCHHHH
Confidence 4444336788888887531 21 24555533222333444443111 0 0133332 21 1 488889
Q ss_pred HHHHHHHhhcCCCCeEEEEcCceeEeccHHHHHHHH
Q 044626 103 IRRCLWVLEEYPVTEFLILPGHHLYKMDYQRLIEAH 138 (429)
Q Consensus 103 l~~~~~~i~~~~~~~~lvl~gD~i~~~~l~~~~~~~ 138 (429)
+-.+++.... +.++++++|-+...+..+++...
T Consensus 74 ~N~Gi~~a~g---~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 74 MNKGIAMAQG---RFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred HHHHHHHcCC---CEEEEEeCCcccCcCHHHHHHHH
Confidence 8888877653 88889998877644543344433
No 328
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=21.77 E-value=6.5e+02 Score=23.34 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=27.2
Q ss_pred cCcHHHHHHHHHHhhcCCCCeEEEEcCceeEecc-HHHHHH
Q 044626 97 QGNADAIRRCLWVLEEYPVTEFLILPGHHLYKMD-YQRLIE 136 (429)
Q Consensus 97 ~Gt~~al~~~~~~i~~~~~~~~lvl~gD~i~~~~-l~~~~~ 136 (429)
.|.+.+.-.+....+ .+-++++.+|.+...+ +..+++
T Consensus 74 f~~a~arN~g~~~A~---~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 74 FSRAKARNIGAKYAR---GDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred cCHHHHHHHHHHHcC---CCEEEEEcCCeeeCHHHHHHHHH
Confidence 467666666666655 3899999999988665 477777
No 329
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=20.67 E-value=1.6e+02 Score=28.77 Aligned_cols=56 Identities=9% Similarity=0.150 Sum_probs=43.3
Q ss_pred CCcccccccccccccccCCcchhHHHHHHhhHhc-CCCeEEEEeecC--hhHHHHHHhc
Q 044626 13 SRLYPLTKRRSEGAIPLAANYRLVDAVVSNCINS-NINKIYALTQFN--STSLNLHLSR 68 (429)
Q Consensus 13 sRl~plt~~~pK~Llpi~g~~plI~~~i~~l~~~-gi~~I~Iv~~~~--~~~i~~~l~~ 68 (429)
..|+||....+.-++.|=++..-+.++|+.|.++ ||++..++.++. .+++.+.++.
T Consensus 23 ~~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~~ 81 (356)
T PF05060_consen 23 DKFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQS 81 (356)
T ss_pred hhcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHHh
Confidence 4566777777778888889845899999999875 799999999876 4666666654
Done!