BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044627
(524 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 108/166 (65%), Gaps = 5/166 (3%)
Query: 12 KYDVFLSFRGEDTRNNFTSHLFAAFCREKIKAFIDE-QLKKGDDISSALLNAIEESKISV 70
KYDVFLSFRG DTR+NF S L+ R I+ F D+ +L+ G S L + IE S+ +V
Sbjct: 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 71 IIFSKGYASSTWCLEELVKILECKKRKGQTVIPVFYNVDPSDVRNQTGSFGDAFVEHEND 130
++ S+ YA+S+WCL+ELV I++ +K+ TV+P+FY V+P+ VR QTG + F +H +
Sbjct: 68 VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS- 126
Query: 131 FRDMPQKVHKWRAALTQASNLCGWDSMTIRHEAELVDEIVKDILKK 176
R+ P+KV KWR ALT + L G + +++LVD+I +I K
Sbjct: 127 -REDPEKVLKWRQALTNFAQLSG--DCSGDDDSKLVDKIANEISNK 169
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 4 SSSFCSPRKYDVFLSFRGEDTRNNFTSHLFAAFCREKIKAFIDE-QLKKGDDISSALLNA 62
S SF S +Y+VFLSFRG DTR FT L+ + R KI F D+ +L KG +I LL A
Sbjct: 28 SGSFPS-VEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRA 86
Query: 63 IEESKISVIIFSKGYASSTWCLEELVKILECKKRKGQTVI-PVFYNVDPSDVRNQTGSFG 121
I++SKI V I S GYA S WCL EL +I+ ++ + +I P+FY VDPSDVR+QTG +
Sbjct: 87 IDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYK 146
Query: 122 DAFVEHENDFRDMPQKVHKWRAALTQASNLCGWDSMTIRHEAELVDEIVKDILKKI 177
AF +H N F Q + W+ AL + +L GW + + D++ DI I
Sbjct: 147 KAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHI 200
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 52/254 (20%)
Query: 311 LSRFGHGSRVIVTTRDKKVLDK-YGVDYVYKVE-GFNYRESLEIFCYYAFRQNHCPGDLL 368
L F + ++++TTRDK V D G +V VE G + LEI + N DL
Sbjct: 251 LKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKKEDLP 307
Query: 369 VLSDNVVDYANGSSLALNVL---------RSSFY------------RKSKQHWENALHNP 407
+ +++ GS L ++++ R ++Y RKS + AL
Sbjct: 308 AEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEA 367
Query: 408 KQISDPDIHDMLKISYDELNYKEKDLFL--DIACFFNGEGRDYVKIILN---NRYLVHYG 462
IS + + +K Y +L+ +KD+ + + C + V+ IL N+ L+
Sbjct: 368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCN 427
Query: 463 LNILAGKAL----------ITISNNKLQMRDLLQEMGQRVVCHESYKDPGKYSS----CL 508
N GK+ N+ Q++DL ++M V + Y P S C+
Sbjct: 428 RN---GKSFCYYLHDLQVDFLTEKNRSQLQDLHRKM---VTQFQRYYQPHTLSPDQEDCM 481
Query: 509 -WYHEDVYHVRKKN 521
WY+ YH+ N
Sbjct: 482 YWYNFLAYHMASAN 495
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 14/144 (9%)
Query: 260 RDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFGHSEYLTGGLSRFGHGSR 319
+D+ SQ L NI + R + R + + +ILD+V + + L F +
Sbjct: 208 QDESFSQRLPLNIEEAKDRLRILMLR-KHPRSLLILDDV-------WDSWVLKAFDSQCQ 259
Query: 320 VIVTTRDKKVLDK-YGVDYVYKVE-GFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDY 377
+++TTRDK V D G YV VE + LEI + N DL + +++
Sbjct: 260 ILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFV---NMKKADLPEQAHSIIKE 316
Query: 378 ANGSSLALNVLRSSFYRKSKQHWE 401
GS L ++++ + R WE
Sbjct: 317 CKGSPLVVSLI-GALLRDFPNRWE 339
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 14/144 (9%)
Query: 260 RDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFGHSEYLTGGLSRFGHGSR 319
+D+ SQ L NI + R + R + + +ILD+V + + L F +
Sbjct: 214 QDESFSQRLPLNIEEAKDRLRILMLR-KHPRSLLILDDV-------WDSWVLKAFDSQCQ 265
Query: 320 VIVTTRDKKVLDK-YGVDYVYKVE-GFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDY 377
+++TTRDK V D G YV VE + LEI + N DL + +++
Sbjct: 266 ILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFV---NMKKADLPEQAHSIIKE 322
Query: 378 ANGSSLALNVLRSSFYRKSKQHWE 401
GS L ++++ + R WE
Sbjct: 323 CKGSPLVVSLI-GALLRDFPNRWE 345
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 102/254 (40%), Gaps = 52/254 (20%)
Query: 311 LSRFGHGSRVIVTTRDKKVLDK-YGVDYVYKVE-GFNYRESLEIFCYYAFRQNHCPGDLL 368
L F + ++++TT DK V D G +V VE G + LEI + N DL
Sbjct: 258 LKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKKEDLP 314
Query: 369 VLSDNVVDYANGSSLALNVL---------RSSFY------------RKSKQHWENALHNP 407
+ +++ GS L ++++ R ++Y RKS + AL
Sbjct: 315 AEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEA 374
Query: 408 KQISDPDIHDMLKISYDELNYKEKDLFLD--IACFFNGEGRDYVKIILN---NRYLVHYG 462
IS + + +K Y +L+ +KD+ + + C + V+ IL N+ L+
Sbjct: 375 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCN 434
Query: 463 LNILAGKAL----------ITISNNKLQMRDLLQEMGQRVVCHESYKDPGKYSS----CL 508
N GK+ N+ Q++DL ++M V + Y P S C+
Sbjct: 435 RN---GKSFCYYLHDLQVDFLTEKNRSQLQDLHRKM---VTQFQRYYQPHTLSPDQEDCM 488
Query: 509 -WYHEDVYHVRKKN 521
WY+ YH+ N
Sbjct: 489 YWYNFLAYHMASAN 502
>pdb|1NHG|A Chain A, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Triclosan
pdb|1NHG|B Chain B, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Triclosan
pdb|1NHW|A Chain A, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-carrier-protein Reductase
pdb|1NHW|B Chain B, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-carrier-protein Reductase
pdb|1NNU|A Chain A, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Triclosan Analog
pdb|1NNU|B Chain B, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Triclosan Analog
pdb|2NQ8|A Chain A, Malarial Enoyl Acyl Acp Reductase Bound With Inh-Nad
Adduct
pdb|2NQ8|B Chain B, Malarial Enoyl Acyl Acp Reductase Bound With Inh-Nad
Adduct
Length = 229
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 22 EDTRNNFTSHLFAAFCREKIKAFIDEQLKKGDDISSALLNAIEESKISVIIFSKGY---- 77
E+T+NN ++ + E + I ++ K + + +L NA E K + KGY
Sbjct: 83 EETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDAL 142
Query: 78 ASSTWCLEELVKILECKKRKGQTVIPVFYNVDPSDVRNQTGSFGDAFVEHENDFR 132
+ S++ L L K + ++I + Y+ V G A E+D R
Sbjct: 143 SKSSYSLISLCKYFVNIMKPQSSIISLTYHASQKVVPGYGGGMSSAKAALESDTR 197
>pdb|3AM3|A Chain A, A372m Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan
pdb|3AM3|B Chain B, A372m Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan
pdb|3AM4|A Chain A, A372m Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan Variant T1
pdb|3AM4|B Chain B, A372m Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan Variant T1
Length = 329
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 22 EDTRNNFTSHLFAAFCREKIKAFIDEQLKKGDDISSALLNAIEESKISVIIFSKGY---- 77
E+T+NN ++ + E + I ++ K + + +L NA E K + KGY
Sbjct: 84 EETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDAL 143
Query: 78 ASSTWCLEELVKILECKKRKGQTVIPVFYNVDPSDVRNQTGSFGDAFVEHENDFR 132
+ S++ L L K + ++I + Y+ V G A E+D R
Sbjct: 144 SKSSYSLISLCKYFVNIMKPQSSIISLTYHASQKVVPGYGGGMSSAKAALESDTR 198
>pdb|1UH5|A Chain A, Crystal Structure Of Enoyl-Acp Reductase With Triclosan At
2.2angstroms
pdb|1UH5|B Chain B, Crystal Structure Of Enoyl-Acp Reductase With Triclosan At
2.2angstroms
pdb|1V35|A Chain A, Crystal Structure Of Eoyl-Acp Reductase With Nadh
pdb|1V35|B Chain B, Crystal Structure Of Eoyl-Acp Reductase With Nadh
pdb|3LSY|A Chain A, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T0
pdb|3LSY|B Chain B, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T0
pdb|3LT0|A Chain A, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Complex With Triclosan Variant T1
pdb|3LT0|B Chain B, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Complex With Triclosan Variant T1
pdb|3LT1|A Chain A, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T2
pdb|3LT1|B Chain B, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T2
pdb|3LT2|A Chain A, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T3
pdb|3LT2|B Chain B, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T3
pdb|3LT4|A Chain A, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant Pb4
pdb|3LT4|B Chain B, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant Pb4
Length = 329
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 22 EDTRNNFTSHLFAAFCREKIKAFIDEQLKKGDDISSALLNAIEESKISVIIFSKGY---- 77
E+T+NN ++ + E + I ++ K + + +L NA E K + KGY
Sbjct: 84 EETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDAL 143
Query: 78 ASSTWCLEELVKILECKKRKGQTVIPVFYNVDPSDVRNQTGSFGDAFVEHENDFR 132
+ S++ L L K + ++I + Y+ V G A E+D R
Sbjct: 144 SKSSYSLISLCKYFVNIMKPQSSIISLTYHASQKVVPGYGGGMSSAKAALESDTR 198
>pdb|3AM5|A Chain A, K316a Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan
pdb|3AM5|B Chain B, K316a Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan
Length = 329
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 22 EDTRNNFTSHLFAAFCREKIKAFIDEQLKKGDDISSALLNAIEESKISVIIFSKGY---- 77
E+T+NN ++ + E + I ++ K + + +L NA E K + KGY
Sbjct: 84 EETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDAL 143
Query: 78 ASSTWCLEELVKILECKKRKGQTVIPVFYNVDPSDVRNQTGSFGDAFVEHENDFR 132
+ S++ L L K + ++I + Y+ V G A E+D R
Sbjct: 144 SKSSYSLISLCKYFVNIMKPQSSIISLTYHASQKVVPGYGGGMSSAKAALESDTR 198
>pdb|1YQQ|A Chain A, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQQ|B Chain B, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQQ|C Chain C, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQU|A Chain A, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQU|B Chain B, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQU|C Chain C, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|A Chain A, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|B Chain B, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|C Chain C, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|D Chain D, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|E Chain E, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|F Chain F, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
Length = 277
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
Query: 185 NSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFM 244
+ LV + HI + +GL D R + A RA+L +++ + EG
Sbjct: 126 GAGSLVALKDHINTMPGTPMVGLNDDRFGERFFSLANAYDAEYRALLQKVAKE-EGFPLT 184
Query: 245 ANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCII 294
V E + + QI+G +++ S+ P I+ R +KV +
Sbjct: 185 EGVFVSYPGPNFETAAEIRMMQIIGGDVVGMSVVPEVISARHCDLKVVAV 234
>pdb|1VRW|A Chain A, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Nadh
pdb|1VRW|B Chain B, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Nadh
pdb|1ZSN|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZSN|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZW1|A Chain A, Synthesis, Biological Activity, And X-ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-substituted
Triclosan Derivatives
pdb|1ZW1|B Chain B, Synthesis, Biological Activity, And X-ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-substituted
Triclosan Derivatives
pdb|1ZXB|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXB|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXL|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXL|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
Length = 336
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 22 EDTRNNFTSHLFAAFCREKIKAFIDEQLKKGDDISSALLNAIEESKISVIIFSKGY---- 77
E+T+NN ++ + E + I ++ K + + +L NA E K + KGY
Sbjct: 83 EETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDAL 142
Query: 78 ASSTWCLEELVKILECKKRKGQTVIPVFYNVDPSDVRNQTGSFGDAFVEHENDFR 132
+ S++ L L K + ++I + Y+ V G A E+D R
Sbjct: 143 SKSSYSLISLCKYFVNIMKPQSSIISLTYHASQKVVPGYGGGMSSAKAALESDTR 197
>pdb|2FOI|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase.
pdb|2FOI|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase
Length = 269
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 22 EDTRNNFTSHLFAAFCREKIKAFIDEQLKKGDDISSALLNAIEESKISVIIFSKGY---- 77
E+T+NN ++ + E + I ++ K + + +L NA E K + KGY
Sbjct: 83 EETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDAL 142
Query: 78 ASSTWCLEELVKILECKKRKGQTVIPVFYNVDPSDVRNQTGSFGDAFVEHENDFR 132
+ S++ L L K + ++I + Y+ V G A E+D R
Sbjct: 143 SKSSYSLISLCKYFVNIMKPQSSIISLTYHASQKVVPGYGGGMSSAKAALESDTR 197
>pdb|2OL4|A Chain A, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OL4|B Chain B, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OOS|A Chain A, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OOS|B Chain B, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OP0|A Chain A, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OP0|B Chain B, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OP1|A Chain A, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OP1|B Chain B, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
Length = 338
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 22 EDTRNNFTSHLFAAFCREKIKAFIDEQLKKGDDISSALLNAIEESKISVIIFSKGY---- 77
E+T+NN ++ + E + I ++ K + + +L NA E K + KGY
Sbjct: 92 EETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDAL 151
Query: 78 ASSTWCLEELVKILECKKRKGQTVIPVFYNVDPSDVRNQTGSFGDAFVEHENDFR 132
+ S++ L L K + ++I + Y+ V G A E+D R
Sbjct: 152 SKSSYSLISLCKYFVNIMKPQSSIISLTYHASQKVVPGYGGGMSSAKAALESDTR 206
>pdb|3FVC|A Chain A, Crystal Structure Of A Trimeric Variant Of The
Epstein-Barr Virus Glycoprotein B
Length = 663
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 346 YRESLEIFC-YYAFRQNHCPGDLLVLSDNVVDYA 378
+R S +I C + R+NH G L+V DN++ Y+
Sbjct: 38 FRFSSDIQCPSFGTRENHTEGLLMVFKDNIIPYS 71
>pdb|2O2Y|A Chain A, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|B Chain B, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|C Chain C, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|D Chain D, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
Length = 349
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 22 EDTRNNFTSHLFAAFCREKIKAFIDEQLKKGDDISSALLNAIEESKISVIIFSKGY---- 77
E+T+NN ++ + E + I ++ K + + +L NA E K + KGY
Sbjct: 96 EETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDAL 155
Query: 78 ASSTWCLEELVKILECKKRKGQTVIPVFYNVDPSDVRNQTGSFGDAFVEHENDFR 132
+ S++ L L K + ++I + Y+ V G A E+D R
Sbjct: 156 SKSSYSLISLCKYFVNIMKPQSSIISLTYHASQKVVPGYGGGMSSAKAALESDTR 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,873,253
Number of Sequences: 62578
Number of extensions: 673222
Number of successful extensions: 1553
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1539
Number of HSP's gapped (non-prelim): 20
length of query: 524
length of database: 14,973,337
effective HSP length: 103
effective length of query: 421
effective length of database: 8,527,803
effective search space: 3590205063
effective search space used: 3590205063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)