Query 044627
Match_columns 524
No_of_seqs 377 out of 2991
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 05:10:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.6E-93 3.5E-98 820.8 48.4 518 1-524 1-531 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1.2E-44 2.7E-49 397.2 25.3 299 190-494 161-496 (889)
3 PLN03194 putative disease resi 100.0 1.8E-41 3.9E-46 297.9 13.9 159 4-179 18-179 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 2.2E-40 4.9E-45 327.6 12.3 261 192-456 1-279 (287)
5 PF01582 TIR: TIR domain; Int 99.8 5.8E-22 1.3E-26 174.0 3.8 132 15-146 1-140 (141)
6 smart00255 TIR Toll - interleu 99.8 2.9E-20 6.2E-25 163.3 11.6 136 12-149 1-138 (140)
7 PRK04841 transcriptional regul 99.7 4E-15 8.7E-20 170.2 27.1 293 181-497 8-336 (903)
8 PF13676 TIR_2: TIR domain; PD 99.6 1.1E-16 2.3E-21 132.4 3.3 87 15-107 1-87 (102)
9 PRK00411 cdc6 cell division co 99.5 6.8E-12 1.5E-16 129.8 23.8 284 181-475 24-358 (394)
10 COG2909 MalT ATP-dependent tra 99.4 1.1E-11 2.4E-16 131.4 20.9 295 181-498 13-343 (894)
11 PF01637 Arch_ATPase: Archaeal 99.4 2E-12 4.4E-17 123.3 13.2 194 189-387 1-233 (234)
12 TIGR00635 ruvB Holliday juncti 99.4 1.1E-11 2.5E-16 123.5 18.1 266 187-475 4-289 (305)
13 TIGR02928 orc1/cdc6 family rep 99.4 1E-10 2.3E-15 119.7 24.9 283 182-475 10-350 (365)
14 PRK00080 ruvB Holliday junctio 99.4 1E-11 2.2E-16 125.0 16.7 271 183-475 21-310 (328)
15 COG3899 Predicted ATPase [Gene 99.3 1.3E-11 2.9E-16 137.4 15.9 323 188-523 1-407 (849)
16 PF05729 NACHT: NACHT domain 99.2 1.9E-10 4.2E-15 103.5 11.6 142 211-357 1-163 (166)
17 TIGR03015 pepcterm_ATPase puta 99.2 1.3E-09 2.9E-14 106.6 17.8 177 210-392 43-242 (269)
18 COG3903 Predicted ATPase [Gene 99.1 3.7E-11 8.1E-16 118.5 4.9 279 209-495 13-316 (414)
19 COG2256 MGS1 ATPase related to 99.0 3.8E-09 8.3E-14 103.8 13.6 170 185-382 22-206 (436)
20 PRK06893 DNA replication initi 98.9 2.7E-08 5.8E-13 94.7 15.4 152 210-390 39-205 (229)
21 PRK13342 recombination factor 98.9 7.2E-08 1.6E-12 100.1 19.0 179 184-390 9-198 (413)
22 PTZ00112 origin recognition co 98.9 5.5E-08 1.2E-12 104.7 17.5 281 183-475 751-1086(1164)
23 TIGR03420 DnaA_homol_Hda DnaA 98.8 8.5E-08 1.8E-12 91.2 15.0 175 186-391 14-204 (226)
24 PRK07003 DNA polymerase III su 98.8 2E-07 4.3E-12 99.9 19.0 184 183-388 12-221 (830)
25 KOG3678 SARM protein (with ste 98.8 1.5E-08 3.2E-13 100.3 9.4 144 9-182 609-761 (832)
26 PTZ00202 tuzin; Provisional 98.8 6.4E-07 1.4E-11 90.0 20.6 202 144-355 212-432 (550)
27 PRK07471 DNA polymerase III su 98.8 9.4E-07 2E-11 89.5 20.7 193 182-388 14-238 (365)
28 PRK14961 DNA polymerase III su 98.8 4.6E-07 9.9E-12 92.4 18.3 180 183-384 12-216 (363)
29 PRK14963 DNA polymerase III su 98.7 8.3E-07 1.8E-11 93.6 19.9 187 184-385 11-214 (504)
30 COG1474 CDC6 Cdc6-related prot 98.7 7.2E-06 1.6E-10 83.0 24.9 280 182-475 12-334 (366)
31 PRK14949 DNA polymerase III su 98.7 4.1E-07 9E-12 99.3 16.5 187 184-388 13-221 (944)
32 PRK14960 DNA polymerase III su 98.7 4.6E-07 9.9E-12 96.2 16.4 179 184-384 12-215 (702)
33 PRK12323 DNA polymerase III su 98.7 3.9E-07 8.5E-12 96.4 15.6 195 183-388 12-226 (700)
34 PRK12402 replication factor C 98.7 5.4E-07 1.2E-11 91.2 16.2 196 184-386 12-224 (337)
35 KOG2028 ATPase related to the 98.7 2.6E-07 5.6E-12 89.5 12.3 175 184-382 135-330 (554)
36 PRK04195 replication factor C 98.7 1.2E-06 2.7E-11 92.7 18.7 180 183-386 10-200 (482)
37 PRK08903 DnaA regulatory inact 98.7 3.9E-07 8.4E-12 86.8 13.6 174 185-392 16-203 (227)
38 PLN03025 replication factor C 98.7 1.4E-06 3E-11 87.3 18.1 182 183-384 9-196 (319)
39 TIGR01242 26Sp45 26S proteasom 98.6 1.1E-07 2.5E-12 97.0 10.1 175 184-382 119-328 (364)
40 PF13191 AAA_16: AAA ATPase do 98.6 5.9E-08 1.3E-12 89.0 7.3 50 188-237 1-51 (185)
41 PRK14957 DNA polymerase III su 98.6 9.1E-07 2E-11 93.5 16.6 184 184-389 13-222 (546)
42 PF13173 AAA_14: AAA domain 98.6 1.2E-07 2.6E-12 81.6 8.3 119 211-349 3-127 (128)
43 PF05496 RuvB_N: Holliday junc 98.6 4.2E-07 9.1E-12 83.8 12.2 180 183-392 20-225 (233)
44 PRK00440 rfc replication facto 98.6 2.5E-06 5.4E-11 85.5 19.2 182 185-385 15-200 (319)
45 cd00009 AAA The AAA+ (ATPases 98.6 3.3E-07 7.1E-12 80.1 10.8 123 190-328 1-131 (151)
46 PRK09112 DNA polymerase III su 98.6 2.1E-07 4.6E-12 93.7 10.6 195 182-388 18-240 (351)
47 TIGR02397 dnaX_nterm DNA polym 98.6 2.5E-06 5.5E-11 87.0 18.7 184 183-388 10-218 (355)
48 PRK08727 hypothetical protein; 98.6 8.6E-07 1.9E-11 84.5 14.1 169 186-385 18-201 (233)
49 PRK14962 DNA polymerase III su 98.6 1.9E-06 4E-11 90.2 17.7 187 183-391 10-222 (472)
50 PRK07940 DNA polymerase III su 98.6 2E-06 4.3E-11 87.9 17.0 174 187-385 5-210 (394)
51 PRK07994 DNA polymerase III su 98.6 1.1E-06 2.4E-11 94.4 15.6 194 183-388 12-221 (647)
52 PRK05564 DNA polymerase III su 98.6 2.5E-06 5.4E-11 85.3 16.8 175 187-386 4-188 (313)
53 PRK06645 DNA polymerase III su 98.6 2.2E-06 4.9E-11 90.0 17.1 186 183-383 17-224 (507)
54 PF13401 AAA_22: AAA domain; P 98.6 1.8E-07 3.8E-12 80.7 7.4 111 210-326 4-125 (131)
55 PRK05642 DNA replication initi 98.6 2.2E-06 4.8E-11 81.7 15.5 152 210-390 45-210 (234)
56 PF14516 AAA_35: AAA-like doma 98.5 2E-05 4.4E-10 79.2 22.8 276 181-483 5-322 (331)
57 PRK14956 DNA polymerase III su 98.5 1.8E-06 3.9E-11 89.2 15.0 189 183-383 14-217 (484)
58 PF00308 Bac_DnaA: Bacterial d 98.5 8.2E-06 1.8E-10 77.0 18.4 161 209-389 33-209 (219)
59 PRK08691 DNA polymerase III su 98.5 1.5E-06 3.3E-11 93.1 14.8 191 183-385 12-217 (709)
60 TIGR00678 holB DNA polymerase 98.5 3.9E-06 8.4E-11 77.3 15.9 159 198-383 3-186 (188)
61 PRK08084 DNA replication initi 98.5 3.4E-06 7.3E-11 80.6 15.9 151 210-389 45-210 (235)
62 PRK14951 DNA polymerase III su 98.5 4.1E-06 8.9E-11 89.8 18.1 188 184-385 13-222 (618)
63 PRK13341 recombination factor 98.5 1.6E-06 3.4E-11 95.0 15.1 171 184-383 25-212 (725)
64 PRK14964 DNA polymerase III su 98.5 4.9E-06 1.1E-10 86.8 17.9 179 183-383 9-212 (491)
65 PRK07764 DNA polymerase III su 98.5 5.3E-06 1.1E-10 92.1 19.1 184 184-383 12-216 (824)
66 PRK14087 dnaA chromosomal repl 98.5 2.5E-06 5.5E-11 89.0 15.2 166 210-391 141-322 (450)
67 PRK14958 DNA polymerase III su 98.5 2.8E-06 6E-11 89.9 15.4 184 183-388 12-221 (509)
68 PRK14969 DNA polymerase III su 98.5 5.1E-06 1.1E-10 88.4 16.6 183 184-388 13-221 (527)
69 PRK05896 DNA polymerase III su 98.4 6.2E-06 1.3E-10 87.5 16.8 196 183-390 12-223 (605)
70 PRK09087 hypothetical protein; 98.4 5.4E-06 1.2E-10 78.5 14.9 141 210-388 44-195 (226)
71 PRK03992 proteasome-activating 98.4 1.9E-06 4.2E-11 88.5 12.5 174 185-382 129-337 (389)
72 PRK14952 DNA polymerase III su 98.4 1.6E-05 3.4E-10 85.1 19.2 196 183-390 9-222 (584)
73 PRK09111 DNA polymerase III su 98.4 9.2E-06 2E-10 87.3 17.5 191 183-386 20-231 (598)
74 PRK14959 DNA polymerase III su 98.4 1.1E-05 2.3E-10 86.2 16.5 194 184-392 13-225 (624)
75 PRK14970 DNA polymerase III su 98.4 1.8E-05 3.9E-10 81.1 17.4 181 183-384 13-205 (367)
76 PRK14953 DNA polymerase III su 98.3 2.7E-05 5.8E-10 82.0 18.4 176 183-385 12-217 (486)
77 PRK14955 DNA polymerase III su 98.3 1.2E-05 2.7E-10 82.9 15.7 194 183-385 12-225 (397)
78 TIGR02881 spore_V_K stage V sp 98.3 9.9E-06 2.1E-10 78.8 13.6 153 188-359 7-193 (261)
79 TIGR00362 DnaA chromosomal rep 98.3 2.1E-05 4.5E-10 81.7 16.5 159 210-388 136-310 (405)
80 PRK14088 dnaA chromosomal repl 98.3 3E-05 6.5E-10 80.9 17.5 159 210-387 130-304 (440)
81 PRK14950 DNA polymerase III su 98.3 3.4E-05 7.4E-10 83.5 18.5 193 184-387 13-220 (585)
82 PHA02544 44 clamp loader, smal 98.3 1.3E-05 2.8E-10 80.4 14.1 150 183-355 17-171 (316)
83 PRK07133 DNA polymerase III su 98.3 3E-05 6.5E-10 84.1 17.4 189 183-389 14-221 (725)
84 TIGR03689 pup_AAA proteasome A 98.3 1E-05 2.3E-10 84.7 13.6 160 186-357 181-378 (512)
85 PF08937 DUF1863: MTH538 TIR-l 98.3 1.5E-06 3.3E-11 74.9 6.1 88 13-105 1-106 (130)
86 PRK14954 DNA polymerase III su 98.3 2.9E-05 6.4E-10 83.6 17.2 196 183-387 12-228 (620)
87 TIGR03345 VI_ClpV1 type VI sec 98.3 1.2E-05 2.6E-10 90.3 14.8 179 184-381 184-389 (852)
88 PRK00149 dnaA chromosomal repl 98.3 2.9E-05 6.2E-10 81.7 16.4 178 210-407 148-349 (450)
89 PRK08451 DNA polymerase III su 98.2 5.6E-05 1.2E-09 79.8 18.0 180 184-385 11-215 (535)
90 TIGR02639 ClpA ATP-dependent C 98.2 1.5E-05 3.3E-10 88.6 14.4 155 184-357 179-358 (731)
91 PRK06620 hypothetical protein; 98.2 2.2E-05 4.7E-10 73.8 13.3 134 211-386 45-187 (214)
92 PRK06305 DNA polymerase III su 98.2 7.4E-05 1.6E-09 78.1 18.3 183 184-388 14-223 (451)
93 PRK14948 DNA polymerase III su 98.2 8.1E-05 1.8E-09 80.6 18.7 193 184-386 13-220 (620)
94 PRK06647 DNA polymerase III su 98.2 0.00011 2.3E-09 78.8 19.0 187 183-384 12-216 (563)
95 PTZ00454 26S protease regulato 98.2 1.6E-05 3.5E-10 81.4 12.2 178 183-383 141-352 (398)
96 TIGR02903 spore_lon_C ATP-depe 98.2 3.1E-05 6.6E-10 84.1 14.8 204 183-391 150-398 (615)
97 PRK07399 DNA polymerase III su 98.2 0.00017 3.6E-09 71.8 18.7 191 187-388 4-221 (314)
98 PRK05563 DNA polymerase III su 98.2 0.00011 2.5E-09 78.8 18.8 189 183-383 12-215 (559)
99 PRK05707 DNA polymerase III su 98.1 9.6E-05 2.1E-09 73.9 16.6 156 210-387 22-202 (328)
100 PRK12422 chromosomal replicati 98.1 6.8E-05 1.5E-09 78.2 16.0 153 210-382 141-307 (445)
101 PRK14086 dnaA chromosomal repl 98.1 6.1E-05 1.3E-09 80.2 15.8 158 210-387 314-487 (617)
102 PRK14971 DNA polymerase III su 98.1 0.00038 8.1E-09 75.5 21.8 178 184-383 14-217 (614)
103 PRK14965 DNA polymerase III su 98.1 9.1E-05 2E-09 79.9 16.7 188 183-388 12-221 (576)
104 TIGR02880 cbbX_cfxQ probable R 98.1 9.2E-05 2E-09 72.8 15.3 128 212-358 60-209 (284)
105 CHL00095 clpC Clp protease ATP 98.1 4.2E-05 9.1E-10 86.2 14.3 151 186-356 178-353 (821)
106 PTZ00361 26 proteosome regulat 98.1 1.6E-05 3.5E-10 82.1 9.6 173 186-382 182-389 (438)
107 COG1222 RPT1 ATP-dependent 26S 98.1 4.1E-05 8.9E-10 74.7 11.5 172 187-383 151-358 (406)
108 PRK10865 protein disaggregatio 98.0 4.7E-05 1E-09 85.8 13.4 51 184-236 175-225 (857)
109 TIGR03346 chaperone_ClpB ATP-d 98.0 8.6E-05 1.9E-09 84.0 15.5 154 184-356 170-348 (852)
110 PRK08116 hypothetical protein; 98.0 2.9E-05 6.3E-10 75.5 9.5 102 211-327 115-221 (268)
111 TIGR01241 FtsH_fam ATP-depende 98.0 5.9E-05 1.3E-09 80.3 12.6 199 186-407 54-295 (495)
112 cd01128 rho_factor Transcripti 98.0 6.9E-06 1.5E-10 78.6 5.0 90 210-301 16-115 (249)
113 CHL00181 cbbX CbbX; Provisiona 98.0 0.00033 7.1E-09 68.8 16.9 130 211-359 60-211 (287)
114 PF05673 DUF815: Protein of un 98.0 0.00051 1.1E-08 64.5 16.8 56 183-238 23-80 (249)
115 CHL00176 ftsH cell division pr 98.0 9.1E-05 2E-09 80.3 13.5 173 186-381 182-387 (638)
116 PRK09376 rho transcription ter 98.0 1E-05 2.2E-10 81.1 5.4 100 198-300 158-267 (416)
117 PF00004 AAA: ATPase family as 97.9 4.3E-05 9.2E-10 65.6 7.8 23 213-235 1-23 (132)
118 PRK11034 clpA ATP-dependent Cl 97.9 8.7E-05 1.9E-09 82.0 11.6 151 186-356 185-361 (758)
119 KOG2227 Pre-initiation complex 97.9 0.00034 7.4E-09 70.7 14.2 203 184-392 147-376 (529)
120 PRK08769 DNA polymerase III su 97.8 0.00081 1.7E-08 66.8 16.6 165 196-387 13-207 (319)
121 COG0593 DnaA ATPase involved i 97.8 0.00052 1.1E-08 69.7 15.4 134 209-359 112-259 (408)
122 COG3267 ExeA Type II secretory 97.8 0.001 2.2E-08 62.4 15.9 179 207-390 48-247 (269)
123 PF05621 TniB: Bacterial TniB 97.8 0.00044 9.5E-09 67.0 13.9 193 187-386 34-259 (302)
124 KOG0989 Replication factor C, 97.8 0.00016 3.4E-09 69.3 10.4 186 183-388 32-231 (346)
125 PRK08181 transposase; Validate 97.8 5.7E-05 1.2E-09 73.1 7.6 99 211-327 107-209 (269)
126 COG2255 RuvB Holliday junction 97.8 0.0012 2.7E-08 62.7 16.0 262 183-479 22-316 (332)
127 PF08357 SEFIR: SEFIR domain; 97.8 2.7E-05 5.9E-10 68.9 4.8 64 14-77 2-70 (150)
128 COG1373 Predicted ATPase (AAA+ 97.8 0.00045 9.7E-09 71.2 14.4 164 192-387 22-191 (398)
129 PRK08058 DNA polymerase III su 97.8 0.00069 1.5E-08 68.1 15.3 145 188-356 6-181 (329)
130 smart00382 AAA ATPases associa 97.8 8.2E-05 1.8E-09 64.1 7.5 35 211-245 3-37 (148)
131 KOG2543 Origin recognition com 97.8 8.9E-05 1.9E-09 72.9 8.2 162 186-357 5-193 (438)
132 TIGR01243 CDC48 AAA family ATP 97.7 0.00021 4.6E-09 79.8 12.2 174 186-382 177-381 (733)
133 PRK12377 putative replication 97.7 0.00013 2.8E-09 69.8 9.1 73 210-299 101-173 (248)
134 TIGR01243 CDC48 AAA family ATP 97.7 0.0003 6.6E-09 78.6 13.2 172 187-382 453-657 (733)
135 TIGR00602 rad24 checkpoint pro 97.7 0.00018 3.9E-09 77.6 10.7 53 183-235 80-135 (637)
136 TIGR00767 rho transcription te 97.7 5.6E-05 1.2E-09 76.2 6.4 91 209-301 167-267 (415)
137 CHL00195 ycf46 Ycf46; Provisio 97.7 0.00016 3.6E-09 75.9 10.1 175 187-382 228-429 (489)
138 PRK06090 DNA polymerase III su 97.7 0.0034 7.3E-08 62.3 18.3 157 197-388 13-201 (319)
139 PRK07952 DNA replication prote 97.7 0.00023 5E-09 67.9 9.6 88 196-299 85-172 (244)
140 PRK09183 transposase/IS protei 97.7 0.00014 2.9E-09 70.5 8.0 35 211-245 103-137 (259)
141 TIGR02640 gas_vesic_GvpN gas v 97.7 0.00031 6.7E-09 68.3 10.5 26 211-236 22-47 (262)
142 PRK06871 DNA polymerase III su 97.6 0.0031 6.6E-08 62.8 17.4 167 197-383 12-198 (325)
143 PRK06526 transposase; Provisio 97.6 9.7E-05 2.1E-09 71.1 6.3 36 210-245 98-133 (254)
144 PRK10787 DNA-binding ATP-depen 97.6 0.0012 2.7E-08 73.5 15.3 186 159-357 284-506 (784)
145 TIGR02639 ClpA ATP-dependent C 97.6 0.0011 2.4E-08 74.0 15.0 50 186-235 453-509 (731)
146 PRK07993 DNA polymerase III su 97.6 0.0028 6.1E-08 63.6 16.5 156 197-384 12-200 (334)
147 COG0466 Lon ATP-dependent Lon 97.6 0.0013 2.8E-08 70.0 14.4 158 186-358 322-509 (782)
148 PF10443 RNA12: RNA12 protein; 97.6 0.012 2.5E-07 59.9 20.6 104 290-394 149-284 (431)
149 PLN00020 ribulose bisphosphate 97.6 0.00063 1.4E-08 67.6 11.3 151 208-383 146-333 (413)
150 KOG0744 AAA+-type ATPase [Post 97.6 0.00037 8.1E-09 67.1 9.3 79 210-300 177-261 (423)
151 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00082 1.8E-08 76.2 13.8 132 186-326 564-717 (852)
152 PRK10865 protein disaggregatio 97.6 0.0013 2.9E-08 74.2 15.1 115 186-309 567-692 (857)
153 KOG0741 AAA+-type ATPase [Post 97.6 0.0012 2.6E-08 67.6 13.0 130 208-356 536-685 (744)
154 TIGR00763 lon ATP-dependent pr 97.5 0.0018 3.9E-08 72.7 15.7 52 187-238 320-375 (775)
155 PRK10536 hypothetical protein; 97.5 0.00039 8.5E-09 66.1 8.7 134 187-327 55-213 (262)
156 PRK06835 DNA replication prote 97.5 0.0002 4.3E-09 71.5 7.1 35 211-245 184-218 (329)
157 PF13177 DNA_pol3_delta2: DNA 97.5 0.0011 2.5E-08 59.3 11.3 138 191-345 1-162 (162)
158 PRK06964 DNA polymerase III su 97.5 0.011 2.3E-07 59.4 19.3 88 289-386 132-223 (342)
159 PF01695 IstB_IS21: IstB-like 97.5 0.00011 2.5E-09 66.8 4.8 72 210-299 47-118 (178)
160 PRK06921 hypothetical protein; 97.5 0.00012 2.5E-09 71.2 5.1 36 210-245 117-153 (266)
161 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0009 2E-08 69.7 11.5 152 186-357 189-374 (802)
162 PRK08939 primosomal protein Dn 97.5 0.00053 1.1E-08 67.9 9.5 118 191-326 135-260 (306)
163 PRK11331 5-methylcytosine-spec 97.5 0.0002 4.3E-09 73.4 6.7 104 187-302 175-285 (459)
164 COG0470 HolB ATPase involved i 97.4 0.0011 2.5E-08 66.4 11.2 144 188-349 2-173 (325)
165 KOG2228 Origin recognition com 97.4 0.00085 1.8E-08 65.1 9.2 170 185-357 22-219 (408)
166 CHL00095 clpC Clp protease ATP 97.4 0.00095 2.1E-08 75.4 11.3 132 186-326 508-661 (821)
167 COG2607 Predicted ATPase (AAA+ 97.4 0.0027 5.8E-08 59.0 11.7 57 184-240 57-115 (287)
168 PRK08118 topology modulation p 97.4 0.00063 1.4E-08 61.3 7.7 34 212-245 3-39 (167)
169 KOG0730 AAA+-type ATPase [Post 97.4 0.002 4.3E-08 67.9 12.1 171 188-382 435-637 (693)
170 COG0542 clpA ATP-binding subun 97.3 0.0014 3E-08 71.5 10.9 117 186-312 490-618 (786)
171 COG2812 DnaX DNA polymerase II 97.3 0.0019 4E-08 67.7 11.4 185 184-380 13-212 (515)
172 PRK09361 radB DNA repair and r 97.3 0.00072 1.6E-08 64.1 7.8 47 199-245 12-58 (225)
173 COG1223 Predicted ATPase (AAA+ 97.3 0.0031 6.8E-08 59.1 11.1 168 187-381 121-318 (368)
174 PRK07261 topology modulation p 97.3 0.0012 2.5E-08 59.8 8.2 23 212-234 2-24 (171)
175 PF00158 Sigma54_activat: Sigm 97.3 0.0013 2.8E-08 59.2 8.4 45 189-233 1-45 (168)
176 COG1484 DnaC DNA replication p 97.3 0.0015 3.1E-08 63.1 9.3 74 209-299 104-177 (254)
177 TIGR03345 VI_ClpV1 type VI sec 97.3 0.00068 1.5E-08 76.4 8.0 52 186-237 565-623 (852)
178 PRK00771 signal recognition pa 97.2 0.0066 1.4E-07 63.0 14.4 37 209-245 94-130 (437)
179 PHA00729 NTP-binding motif con 97.2 0.00057 1.2E-08 63.9 5.8 27 209-235 16-42 (226)
180 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0017 3.7E-08 67.7 9.7 128 210-358 545-693 (802)
181 KOG0991 Replication factor C, 97.2 0.0044 9.5E-08 57.2 11.1 100 185-302 25-126 (333)
182 TIGR02237 recomb_radB DNA repa 97.2 0.001 2.2E-08 62.3 7.5 43 203-245 5-47 (209)
183 cd01131 PilT Pilus retraction 97.2 0.00082 1.8E-08 62.4 6.5 110 211-329 2-111 (198)
184 PRK08699 DNA polymerase III su 97.2 0.0069 1.5E-07 60.6 13.5 86 290-385 114-203 (325)
185 PF04665 Pox_A32: Poxvirus A32 97.2 0.0005 1.1E-08 65.0 5.0 34 212-245 15-48 (241)
186 cd01120 RecA-like_NTPases RecA 97.2 0.0017 3.6E-08 57.7 8.2 34 212-245 1-34 (165)
187 KOG1514 Origin recognition com 97.1 0.013 2.8E-07 62.4 15.4 201 185-391 394-624 (767)
188 PF02562 PhoH: PhoH-like prote 97.1 0.0014 3E-08 60.6 7.3 123 194-326 7-155 (205)
189 PF13207 AAA_17: AAA domain; P 97.1 0.00033 7.2E-09 59.2 3.0 23 212-234 1-23 (121)
190 KOG0735 AAA+-type ATPase [Post 97.1 0.0099 2.1E-07 63.3 14.2 160 210-388 431-616 (952)
191 PRK11889 flhF flagellar biosyn 97.1 0.012 2.6E-07 59.4 14.4 37 209-245 240-276 (436)
192 PF14532 Sigma54_activ_2: Sigm 97.1 0.00036 7.7E-09 60.7 3.1 46 190-235 1-46 (138)
193 KOG2004 Mitochondrial ATP-depe 97.1 0.0025 5.4E-08 67.7 9.6 157 187-358 411-597 (906)
194 TIGR02902 spore_lonB ATP-depen 97.1 0.004 8.6E-08 66.7 11.4 48 184-233 62-109 (531)
195 PRK10733 hflB ATP-dependent me 97.1 0.0053 1.2E-07 67.3 12.5 130 210-359 185-337 (644)
196 PRK04296 thymidine kinase; Pro 97.1 0.00087 1.9E-08 61.7 5.3 109 211-328 3-117 (190)
197 smart00763 AAA_PrkA PrkA AAA d 97.1 0.0005 1.1E-08 68.7 3.9 51 186-236 50-104 (361)
198 cd01394 radB RadB. The archaea 97.0 0.002 4.4E-08 60.7 7.9 49 197-245 6-54 (218)
199 PRK11034 clpA ATP-dependent Cl 97.0 0.0027 5.8E-08 70.4 9.7 50 186-235 457-513 (758)
200 cd01393 recA_like RecA is a b 97.0 0.0017 3.7E-08 61.5 7.2 48 198-245 7-60 (226)
201 KOG1969 DNA replication checkp 97.0 0.0017 3.8E-08 69.0 7.6 74 208-301 324-399 (877)
202 KOG0731 AAA+-type ATPase conta 97.0 0.0089 1.9E-07 64.9 13.2 176 186-384 310-520 (774)
203 PRK06696 uridine kinase; Valid 97.0 0.00098 2.1E-08 63.1 5.1 46 192-237 3-49 (223)
204 COG0542 clpA ATP-binding subun 97.0 0.0017 3.8E-08 70.7 7.4 152 186-356 169-345 (786)
205 PRK07667 uridine kinase; Provi 97.0 0.0013 2.8E-08 60.8 5.6 42 196-237 3-44 (193)
206 cd01121 Sms Sms (bacterial rad 97.0 0.0038 8.2E-08 63.5 9.4 95 197-298 69-167 (372)
207 COG0464 SpoVK ATPases of the A 97.0 0.0037 8E-08 66.7 9.8 130 209-358 275-424 (494)
208 COG1618 Predicted nucleotide k 96.9 0.00077 1.7E-08 58.6 3.6 37 211-247 6-44 (179)
209 COG1066 Sms Predicted ATP-depe 96.9 0.0047 1E-07 61.9 9.5 95 196-298 79-177 (456)
210 KOG0728 26S proteasome regulat 96.9 0.023 4.9E-07 53.1 13.2 146 188-357 147-331 (404)
211 PRK12608 transcription termina 96.9 0.0025 5.4E-08 64.0 7.4 100 198-300 122-231 (380)
212 TIGR01817 nifA Nif-specific re 96.9 0.013 2.9E-07 63.1 13.6 51 184-234 193-243 (534)
213 PRK04132 replication factor C 96.9 0.036 7.8E-07 61.9 17.0 152 215-385 569-728 (846)
214 PRK06067 flagellar accessory p 96.9 0.0021 4.6E-08 61.4 6.6 47 199-245 14-60 (234)
215 cd00544 CobU Adenosylcobinamid 96.9 0.0013 2.9E-08 59.1 4.9 78 213-298 2-82 (169)
216 TIGR00064 ftsY signal recognit 96.9 0.0034 7.3E-08 61.2 8.0 37 209-245 71-107 (272)
217 PRK14974 cell division protein 96.9 0.016 3.4E-07 58.1 12.7 37 209-245 139-175 (336)
218 PF01583 APS_kinase: Adenylyls 96.9 0.0013 2.9E-08 57.8 4.4 36 210-245 2-37 (156)
219 PTZ00494 tuzin-like protein; P 96.8 0.082 1.8E-06 53.9 17.3 203 144-356 321-543 (664)
220 PF00448 SRP54: SRP54-type pro 96.8 0.0023 5E-08 59.1 6.0 57 210-269 1-57 (196)
221 PF03215 Rad17: Rad17 cell cyc 96.8 0.0065 1.4E-07 64.4 10.0 57 187-245 19-78 (519)
222 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0022 4.9E-08 61.8 5.9 90 210-301 69-175 (274)
223 cd00983 recA RecA is a bacter 96.8 0.0036 7.8E-08 62.1 7.4 47 199-245 43-90 (325)
224 KOG0743 AAA+-type ATPase [Post 96.8 0.018 4E-07 58.5 12.2 150 210-392 235-413 (457)
225 TIGR02974 phageshock_pspF psp 96.8 0.017 3.7E-07 58.0 12.1 45 189-233 1-45 (329)
226 KOG0734 AAA+-type ATPase conta 96.8 0.009 1.9E-07 61.5 10.0 48 188-235 305-362 (752)
227 PRK05022 anaerobic nitric oxid 96.7 0.046 1E-06 58.5 16.1 50 185-234 185-234 (509)
228 COG4088 Predicted nucleotide k 96.7 0.0025 5.3E-08 57.8 5.1 28 211-238 2-29 (261)
229 PRK11608 pspF phage shock prot 96.7 0.0058 1.2E-07 61.4 8.5 46 187-232 6-51 (326)
230 PRK09354 recA recombinase A; P 96.7 0.0041 8.9E-08 62.2 7.2 48 198-245 47-95 (349)
231 PRK05541 adenylylsulfate kinas 96.7 0.0018 3.9E-08 58.8 4.3 37 209-245 6-42 (176)
232 PRK11823 DNA repair protein Ra 96.7 0.008 1.7E-07 62.9 9.7 96 197-299 67-166 (446)
233 TIGR02012 tigrfam_recA protein 96.7 0.004 8.7E-08 61.7 7.0 47 199-245 43-90 (321)
234 KOG0727 26S proteasome regulat 96.7 0.021 4.4E-07 53.4 11.0 52 187-238 155-217 (408)
235 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.013 2.9E-07 51.2 8.9 105 209-332 25-132 (144)
236 PF13671 AAA_33: AAA domain; P 96.6 0.0025 5.4E-08 55.5 4.2 24 212-235 1-24 (143)
237 PF13604 AAA_30: AAA domain; P 96.6 0.0061 1.3E-07 56.4 7.0 112 196-325 7-129 (196)
238 TIGR00416 sms DNA repair prote 96.6 0.01 2.2E-07 62.2 9.3 96 196-298 80-179 (454)
239 PF13238 AAA_18: AAA domain; P 96.6 0.0017 3.6E-08 55.3 2.8 22 213-234 1-22 (129)
240 KOG0652 26S proteasome regulat 96.5 0.088 1.9E-06 49.6 14.1 162 187-372 171-371 (424)
241 TIGR01420 pilT_fam pilus retra 96.5 0.0063 1.4E-07 61.6 6.9 108 210-327 122-230 (343)
242 TIGR00959 ffh signal recogniti 96.5 0.037 8.1E-07 57.3 12.6 26 210-235 99-124 (428)
243 KOG1970 Checkpoint RAD17-RFC c 96.5 0.043 9.4E-07 57.0 12.7 44 192-235 87-135 (634)
244 PF07726 AAA_3: ATPase family 96.5 0.002 4.4E-08 54.3 2.7 31 213-243 2-32 (131)
245 PRK15429 formate hydrogenlyase 96.5 0.011 2.3E-07 65.9 9.1 49 186-234 375-423 (686)
246 PRK06217 hypothetical protein; 96.5 0.013 2.8E-07 53.6 8.3 24 212-235 3-26 (183)
247 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.023 5E-07 50.3 9.3 115 211-327 3-138 (159)
248 PRK15455 PrkA family serine pr 96.4 0.0034 7.3E-08 66.1 4.4 50 187-236 76-129 (644)
249 PF00485 PRK: Phosphoribulokin 96.4 0.0028 6E-08 58.6 3.2 26 212-237 1-26 (194)
250 PRK10416 signal recognition pa 96.3 0.015 3.3E-07 57.9 8.5 37 209-245 113-149 (318)
251 PRK13531 regulatory ATPase Rav 96.3 0.0043 9.3E-08 64.4 4.4 46 187-236 20-65 (498)
252 PRK12724 flagellar biosynthesi 96.3 0.07 1.5E-06 54.7 12.9 25 210-234 223-247 (432)
253 PRK10820 DNA-binding transcrip 96.3 0.072 1.6E-06 57.1 13.8 50 184-233 201-250 (520)
254 KOG3928 Mitochondrial ribosome 96.3 0.045 9.8E-07 54.9 11.2 54 336-392 403-460 (461)
255 cd03223 ABCD_peroxisomal_ALDP 96.3 0.02 4.4E-07 51.4 8.3 125 210-341 27-160 (166)
256 PRK08233 hypothetical protein; 96.3 0.0035 7.6E-08 57.1 3.3 26 210-235 3-28 (182)
257 PRK06762 hypothetical protein; 96.2 0.0036 7.8E-08 56.2 3.3 24 211-234 3-26 (166)
258 PF10137 TIR-like: Predicted n 96.2 0.011 2.4E-07 50.0 6.0 60 14-76 1-61 (125)
259 cd02019 NK Nucleoside/nucleoti 96.2 0.0058 1.2E-07 46.0 3.8 23 212-234 1-23 (69)
260 PTZ00301 uridine kinase; Provi 96.2 0.0038 8.2E-08 58.3 3.4 27 210-236 3-29 (210)
261 PRK00131 aroK shikimate kinase 96.2 0.0038 8.2E-08 56.3 3.3 26 210-235 4-29 (175)
262 cd03214 ABC_Iron-Siderophores_ 96.2 0.025 5.4E-07 51.5 8.6 120 209-331 24-162 (180)
263 PRK10867 signal recognition pa 96.2 0.064 1.4E-06 55.6 12.5 29 209-237 99-127 (433)
264 PRK03839 putative kinase; Prov 96.2 0.0036 7.9E-08 57.0 3.1 24 212-235 2-25 (180)
265 PF08423 Rad51: Rad51; InterP 96.2 0.01 2.2E-07 57.3 6.3 59 198-260 26-90 (256)
266 PF08433 KTI12: Chromatin asso 96.2 0.0018 3.9E-08 62.9 1.0 35 211-245 2-36 (270)
267 KOG0729 26S proteasome regulat 96.2 0.0091 2E-07 56.1 5.5 33 208-245 209-241 (435)
268 PRK04040 adenylate kinase; Pro 96.2 0.0047 1E-07 56.7 3.7 25 211-235 3-27 (188)
269 PF00910 RNA_helicase: RNA hel 96.2 0.0028 6.1E-08 52.4 1.9 26 213-238 1-26 (107)
270 cd03247 ABCC_cytochrome_bd The 96.2 0.027 5.8E-07 51.2 8.6 122 210-341 28-169 (178)
271 cd01129 PulE-GspE PulE/GspE Th 96.2 0.013 2.7E-07 57.0 6.7 103 195-310 68-170 (264)
272 KOG2035 Replication factor C, 96.2 0.23 5.1E-06 47.4 14.7 180 187-382 13-222 (351)
273 PRK09270 nucleoside triphospha 96.1 0.0063 1.4E-07 57.8 4.6 30 208-237 31-60 (229)
274 PRK14722 flhF flagellar biosyn 96.1 0.051 1.1E-06 55.1 11.2 36 210-245 137-174 (374)
275 PRK05480 uridine/cytidine kina 96.1 0.0049 1.1E-07 57.7 3.7 26 209-234 5-30 (209)
276 TIGR03574 selen_PSTK L-seryl-t 96.1 0.0067 1.4E-07 58.5 4.6 26 212-237 1-26 (249)
277 TIGR00150 HI0065_YjeE ATPase, 96.1 0.007 1.5E-07 51.9 4.2 41 195-235 7-47 (133)
278 cd03238 ABC_UvrA The excision 96.1 0.017 3.7E-07 52.4 6.9 23 210-232 21-43 (176)
279 PRK00625 shikimate kinase; Pro 96.1 0.0042 9E-08 56.2 2.9 24 212-235 2-25 (173)
280 CHL00206 ycf2 Ycf2; Provisiona 96.1 0.051 1.1E-06 64.5 12.2 28 208-235 1628-1655(2281)
281 TIGR00708 cobA cob(I)alamin ad 96.1 0.013 2.9E-07 52.5 6.0 113 211-327 6-140 (173)
282 cd03216 ABC_Carb_Monos_I This 96.1 0.0095 2.1E-07 53.4 5.2 115 210-331 26-146 (163)
283 cd03222 ABC_RNaseL_inhibitor T 96.1 0.032 6.9E-07 50.6 8.6 115 210-342 25-146 (177)
284 PRK00889 adenylylsulfate kinas 96.1 0.0074 1.6E-07 54.7 4.4 36 210-245 4-39 (175)
285 TIGR02858 spore_III_AA stage I 96.1 0.03 6.4E-07 54.4 8.8 112 210-330 111-232 (270)
286 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.015 3.3E-07 55.4 6.8 47 199-245 8-60 (235)
287 cd02027 APSK Adenosine 5'-phos 96.1 0.03 6.5E-07 49.3 8.1 24 212-235 1-24 (149)
288 PF10236 DAP3: Mitochondrial r 96.0 0.17 3.8E-06 50.3 14.4 48 338-385 258-306 (309)
289 cd01858 NGP_1 NGP-1. Autoanti 96.0 0.058 1.3E-06 47.8 10.1 43 191-233 82-125 (157)
290 PF07728 AAA_5: AAA domain (dy 96.0 0.0064 1.4E-07 52.8 3.7 22 213-234 2-23 (139)
291 TIGR02655 circ_KaiC circadian 96.0 0.011 2.4E-07 62.7 6.2 50 196-245 249-298 (484)
292 PHA02244 ATPase-like protein 96.0 0.014 3.1E-07 58.5 6.5 53 184-236 93-145 (383)
293 COG0467 RAD55 RecA-superfamily 96.0 0.015 3.2E-07 56.4 6.6 44 202-245 15-58 (260)
294 KOG0736 Peroxisome assembly fa 96.0 0.094 2E-06 56.7 12.7 50 188-237 673-732 (953)
295 PRK12726 flagellar biosynthesi 96.0 0.082 1.8E-06 53.4 11.7 37 209-245 205-241 (407)
296 cd03228 ABCC_MRP_Like The MRP 96.0 0.028 6.1E-07 50.7 7.8 126 209-341 27-167 (171)
297 KOG0739 AAA+-type ATPase [Post 96.0 0.04 8.7E-07 52.9 8.9 171 187-381 133-334 (439)
298 PRK07132 DNA polymerase III su 96.0 0.52 1.1E-05 46.6 17.1 164 198-387 7-184 (299)
299 COG0529 CysC Adenylylsulfate k 96.0 0.0093 2E-07 52.9 4.3 37 209-245 22-58 (197)
300 COG0563 Adk Adenylate kinase a 95.9 0.014 3.1E-07 52.9 5.6 23 212-234 2-24 (178)
301 COG0003 ArsA Predicted ATPase 95.9 0.011 2.3E-07 58.8 5.1 49 210-262 2-50 (322)
302 COG4608 AppF ABC-type oligopep 95.9 0.021 4.6E-07 54.5 6.9 122 209-333 38-176 (268)
303 COG0468 RecA RecA/RadA recombi 95.9 0.027 5.8E-07 54.7 7.8 47 199-245 49-95 (279)
304 COG0465 HflB ATP-dependent Zn 95.9 0.05 1.1E-06 58.0 10.4 175 186-384 149-357 (596)
305 COG0572 Udk Uridine kinase [Nu 95.9 0.0082 1.8E-07 55.6 4.0 29 209-237 7-35 (218)
306 TIGR03877 thermo_KaiC_1 KaiC d 95.9 0.022 4.7E-07 54.5 7.1 48 198-245 9-56 (237)
307 PRK05703 flhF flagellar biosyn 95.9 0.082 1.8E-06 55.0 11.8 36 210-245 221-258 (424)
308 TIGR01360 aden_kin_iso1 adenyl 95.9 0.0063 1.4E-07 55.7 3.2 26 209-234 2-27 (188)
309 TIGR01425 SRP54_euk signal rec 95.9 0.027 5.9E-07 58.0 8.1 29 209-237 99-127 (429)
310 TIGR00235 udk uridine kinase. 95.9 0.0069 1.5E-07 56.6 3.5 27 209-235 5-31 (207)
311 PRK03846 adenylylsulfate kinas 95.9 0.01 2.2E-07 55.0 4.6 37 209-245 23-59 (198)
312 PRK12723 flagellar biosynthesi 95.9 0.051 1.1E-06 55.6 10.0 27 209-235 173-199 (388)
313 PRK04328 hypothetical protein; 95.9 0.023 5.1E-07 54.7 7.1 48 198-245 11-58 (249)
314 PRK13947 shikimate kinase; Pro 95.9 0.0061 1.3E-07 54.9 2.9 26 212-237 3-28 (171)
315 PRK11388 DNA-binding transcrip 95.8 0.22 4.7E-06 55.0 15.6 49 186-234 324-372 (638)
316 PRK06547 hypothetical protein; 95.8 0.0084 1.8E-07 54.2 3.7 27 208-234 13-39 (172)
317 cd03115 SRP The signal recogni 95.8 0.046 9.9E-07 49.4 8.6 34 212-245 2-35 (173)
318 cd00227 CPT Chloramphenicol (C 95.8 0.007 1.5E-07 54.9 3.2 25 211-235 3-27 (175)
319 PF03308 ArgK: ArgK protein; 95.8 0.015 3.3E-07 55.1 5.4 42 196-237 15-56 (266)
320 PRK05986 cob(I)alamin adenolsy 95.8 0.013 2.9E-07 53.3 4.7 114 210-327 22-158 (191)
321 TIGR01359 UMP_CMP_kin_fam UMP- 95.8 0.0063 1.4E-07 55.6 2.6 24 212-235 1-24 (183)
322 COG5635 Predicted NTPase (NACH 95.8 0.07 1.5E-06 60.5 11.4 192 211-408 223-448 (824)
323 PRK15115 response regulator Gl 95.7 0.16 3.4E-06 53.5 13.4 48 187-234 134-181 (444)
324 KOG1051 Chaperone HSP104 and r 95.7 0.067 1.5E-06 59.6 10.7 104 187-302 562-673 (898)
325 COG1102 Cmk Cytidylate kinase 95.7 0.0078 1.7E-07 52.5 2.7 25 212-236 2-26 (179)
326 PF03969 AFG1_ATPase: AFG1-lik 95.7 0.024 5.1E-07 57.5 6.7 103 209-328 61-168 (362)
327 cd02028 UMPK_like Uridine mono 95.7 0.011 2.3E-07 54.0 3.8 25 212-236 1-25 (179)
328 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.013 2.9E-07 56.7 4.7 42 204-245 30-71 (259)
329 cd01122 GP4d_helicase GP4d_hel 95.7 0.045 9.7E-07 53.4 8.4 53 209-267 29-82 (271)
330 PTZ00088 adenylate kinase 1; P 95.7 0.013 2.8E-07 55.5 4.4 23 213-235 9-31 (229)
331 PF02374 ArsA_ATPase: Anion-tr 95.7 0.014 3E-07 58.0 4.7 35 211-245 2-36 (305)
332 COG0703 AroK Shikimate kinase 95.6 0.018 3.9E-07 51.4 4.9 28 211-238 3-30 (172)
333 KOG2170 ATPase of the AAA+ sup 95.6 0.019 4E-07 55.3 5.2 42 193-234 92-134 (344)
334 TIGR03499 FlhF flagellar biosy 95.6 0.04 8.8E-07 54.1 7.9 37 209-245 193-231 (282)
335 KOG0735 AAA+-type ATPase [Post 95.6 0.21 4.6E-06 53.6 13.4 173 188-384 668-872 (952)
336 PRK13765 ATP-dependent proteas 95.6 0.017 3.6E-07 62.8 5.6 77 182-267 26-103 (637)
337 cd01125 repA Hexameric Replica 95.6 0.052 1.1E-06 51.9 8.5 24 212-235 3-26 (239)
338 cd01124 KaiC KaiC is a circadi 95.6 0.022 4.8E-07 52.0 5.6 33 213-245 2-34 (187)
339 PF07724 AAA_2: AAA domain (Cd 95.6 0.0095 2.1E-07 53.7 3.0 36 210-245 3-39 (171)
340 cd03237 ABC_RNaseL_inhibitor_d 95.6 0.051 1.1E-06 52.2 8.2 25 210-234 25-49 (246)
341 TIGR00764 lon_rel lon-related 95.5 0.022 4.7E-07 62.0 6.1 57 185-245 16-73 (608)
342 cd02020 CMPK Cytidine monophos 95.5 0.0095 2.1E-07 52.0 2.7 24 212-235 1-24 (147)
343 PRK13948 shikimate kinase; Pro 95.5 0.012 2.5E-07 53.7 3.3 28 209-236 9-36 (182)
344 PF06745 KaiC: KaiC; InterPro 95.5 0.019 4E-07 54.5 4.9 48 198-245 7-55 (226)
345 PRK12727 flagellar biosynthesi 95.5 0.076 1.6E-06 55.9 9.6 37 209-245 349-387 (559)
346 cd03246 ABCC_Protease_Secretio 95.5 0.031 6.6E-07 50.6 6.0 35 210-245 28-62 (173)
347 cd03230 ABC_DR_subfamily_A Thi 95.5 0.063 1.4E-06 48.5 8.1 36 209-245 25-60 (173)
348 PRK05973 replicative DNA helic 95.5 0.037 8.1E-07 52.5 6.6 37 209-245 63-99 (237)
349 PRK06731 flhF flagellar biosyn 95.5 0.53 1.2E-05 45.7 14.7 36 210-245 75-110 (270)
350 PF00406 ADK: Adenylate kinase 95.4 0.02 4.3E-07 50.5 4.5 20 215-234 1-20 (151)
351 PF03266 NTPase_1: NTPase; In 95.4 0.01 2.2E-07 53.4 2.7 24 213-236 2-25 (168)
352 TIGR00390 hslU ATP-dependent p 95.4 0.016 3.5E-07 59.0 4.3 52 187-238 12-75 (441)
353 PRK13949 shikimate kinase; Pro 95.4 0.011 2.4E-07 53.2 2.9 24 212-235 3-26 (169)
354 cd02021 GntK Gluconate kinase 95.4 0.0099 2.2E-07 52.3 2.5 23 212-234 1-23 (150)
355 TIGR02524 dot_icm_DotB Dot/Icm 95.4 0.017 3.8E-07 58.5 4.6 94 210-309 134-232 (358)
356 cd00464 SK Shikimate kinase (S 95.4 0.012 2.5E-07 52.0 2.9 23 213-235 2-24 (154)
357 cd02024 NRK1 Nicotinamide ribo 95.4 0.01 2.2E-07 54.3 2.6 23 212-234 1-23 (187)
358 PLN03186 DNA repair protein RA 95.4 0.047 1E-06 54.9 7.4 59 197-259 110-174 (342)
359 TIGR03881 KaiC_arch_4 KaiC dom 95.4 0.026 5.5E-07 53.6 5.4 47 199-245 9-55 (229)
360 PRK08533 flagellar accessory p 95.4 0.034 7.4E-07 52.8 6.1 38 208-245 22-59 (230)
361 COG1703 ArgK Putative periplas 95.4 0.025 5.5E-07 54.5 5.1 42 197-238 38-79 (323)
362 cd02023 UMPK Uridine monophosp 95.4 0.01 2.3E-07 54.9 2.5 23 212-234 1-23 (198)
363 cd01130 VirB11-like_ATPase Typ 95.3 0.0068 1.5E-07 55.6 1.2 91 210-308 25-119 (186)
364 COG2884 FtsE Predicted ATPase 95.3 0.11 2.4E-06 46.8 8.7 56 277-334 143-204 (223)
365 COG0488 Uup ATPase components 95.3 0.068 1.5E-06 56.9 8.8 131 210-343 348-511 (530)
366 COG0714 MoxR-like ATPases [Gen 95.3 0.02 4.3E-07 57.7 4.7 53 187-243 24-76 (329)
367 PRK13946 shikimate kinase; Pro 95.3 0.013 2.8E-07 53.7 3.0 26 210-235 10-35 (184)
368 PRK04301 radA DNA repair and r 95.3 0.043 9.2E-07 55.0 6.9 48 198-245 90-143 (317)
369 TIGR02322 phosphon_PhnN phosph 95.3 0.013 2.9E-07 53.2 3.0 25 211-235 2-26 (179)
370 PF13086 AAA_11: AAA domain; P 95.3 0.033 7.1E-07 52.6 5.9 36 195-234 6-41 (236)
371 cd00267 ABC_ATPase ABC (ATP-bi 95.3 0.02 4.3E-07 50.8 4.1 124 210-341 25-153 (157)
372 PF13481 AAA_25: AAA domain; P 95.3 0.039 8.6E-07 50.7 6.2 25 211-235 33-57 (193)
373 COG1428 Deoxynucleoside kinase 95.3 0.013 2.9E-07 53.6 2.9 26 210-235 4-29 (216)
374 PRK05201 hslU ATP-dependent pr 95.3 0.021 4.6E-07 58.2 4.6 52 187-238 15-78 (443)
375 PF00625 Guanylate_kin: Guanyl 95.3 0.02 4.3E-07 52.3 4.1 36 210-245 2-37 (183)
376 cd03232 ABC_PDR_domain2 The pl 95.3 0.068 1.5E-06 49.2 7.6 24 210-233 33-56 (192)
377 PRK05439 pantothenate kinase; 95.3 0.022 4.8E-07 56.3 4.5 29 208-236 84-112 (311)
378 PRK12339 2-phosphoglycerate ki 95.3 0.016 3.4E-07 53.6 3.3 25 210-234 3-27 (197)
379 PF12775 AAA_7: P-loop contain 95.2 0.022 4.8E-07 55.5 4.5 26 210-235 33-58 (272)
380 PRK05800 cobU adenosylcobinami 95.2 0.082 1.8E-06 47.6 7.9 78 212-298 3-85 (170)
381 cd03217 ABC_FeS_Assembly ABC-t 95.2 0.041 8.9E-07 51.0 6.1 25 209-233 25-49 (200)
382 PF13245 AAA_19: Part of AAA d 95.2 0.031 6.7E-07 42.9 4.4 24 210-233 10-33 (76)
383 PRK13543 cytochrome c biogenes 95.2 0.1 2.2E-06 49.0 8.8 26 209-234 36-61 (214)
384 cd02025 PanK Pantothenate kina 95.2 0.012 2.7E-07 55.4 2.6 24 212-235 1-24 (220)
385 PRK15453 phosphoribulokinase; 95.2 0.025 5.4E-07 54.7 4.6 38 208-245 3-40 (290)
386 COG1121 ZnuC ABC-type Mn/Zn tr 95.2 0.063 1.4E-06 51.1 7.2 52 280-333 148-205 (254)
387 cd00071 GMPK Guanosine monopho 95.2 0.014 3E-07 50.6 2.6 26 212-237 1-26 (137)
388 COG3640 CooC CO dehydrogenase 95.2 0.03 6.5E-07 52.1 4.7 26 212-237 2-27 (255)
389 PF03205 MobB: Molybdopterin g 95.1 0.022 4.8E-07 49.5 3.8 35 211-245 1-36 (140)
390 PF06309 Torsin: Torsin; Inte 95.1 0.035 7.5E-07 46.8 4.7 42 193-234 35-77 (127)
391 PF06068 TIP49: TIP49 C-termin 95.1 0.025 5.5E-07 56.4 4.5 55 185-239 22-79 (398)
392 PRK09519 recA DNA recombinatio 95.1 0.048 1E-06 60.2 7.1 94 197-299 46-148 (790)
393 PRK07276 DNA polymerase III su 95.1 1.1 2.3E-05 44.1 15.7 67 288-355 103-173 (290)
394 PTZ00035 Rad51 protein; Provis 95.1 0.088 1.9E-06 53.0 8.5 49 197-245 105-159 (337)
395 PRK14738 gmk guanylate kinase; 95.1 0.018 4E-07 53.7 3.4 31 203-233 6-36 (206)
396 COG1936 Predicted nucleotide k 95.1 0.015 3.3E-07 51.5 2.5 20 212-231 2-21 (180)
397 PRK12337 2-phosphoglycerate ki 95.1 0.037 8E-07 57.2 5.7 27 209-235 254-280 (475)
398 COG0488 Uup ATPase components 95.1 0.064 1.4E-06 57.1 7.7 60 280-342 162-224 (530)
399 PRK14530 adenylate kinase; Pro 95.1 0.017 3.7E-07 54.3 3.0 24 212-235 5-28 (215)
400 TIGR00455 apsK adenylylsulfate 95.1 0.085 1.8E-06 48.2 7.6 28 209-236 17-44 (184)
401 TIGR01313 therm_gnt_kin carboh 95.0 0.013 2.9E-07 52.3 2.2 23 213-235 1-23 (163)
402 PRK05537 bifunctional sulfate 95.0 0.029 6.4E-07 60.4 5.1 50 187-236 369-418 (568)
403 TIGR02236 recomb_radA DNA repa 95.0 0.063 1.4E-06 53.6 7.2 48 198-245 83-136 (310)
404 COG3854 SpoIIIAA ncharacterize 95.0 0.078 1.7E-06 49.2 7.0 108 212-326 139-252 (308)
405 PRK10923 glnG nitrogen regulat 95.0 0.061 1.3E-06 57.0 7.5 48 187-234 138-185 (469)
406 PF00437 T2SE: Type II/IV secr 95.0 0.012 2.7E-07 57.3 1.9 126 187-325 104-230 (270)
407 cd00984 DnaB_C DnaB helicase C 95.0 0.067 1.4E-06 51.2 6.9 55 206-266 9-64 (242)
408 PRK04182 cytidylate kinase; Pr 95.0 0.02 4.3E-07 51.9 3.1 24 212-235 2-25 (180)
409 TIGR03880 KaiC_arch_3 KaiC dom 94.9 0.074 1.6E-06 50.3 7.1 47 199-245 5-51 (224)
410 PRK10463 hydrogenase nickel in 94.9 0.041 8.9E-07 53.6 5.3 41 198-240 94-134 (290)
411 TIGR03600 phage_DnaB phage rep 94.9 0.18 3.9E-06 52.7 10.5 74 189-269 174-248 (421)
412 PRK05057 aroK shikimate kinase 94.9 0.022 4.8E-07 51.5 3.3 25 211-235 5-29 (172)
413 KOG3347 Predicted nucleotide k 94.9 0.019 4E-07 49.4 2.5 25 210-234 7-31 (176)
414 PRK14527 adenylate kinase; Pro 94.9 0.022 4.8E-07 52.4 3.3 27 209-235 5-31 (191)
415 PF00154 RecA: recA bacterial 94.9 0.059 1.3E-06 53.4 6.4 94 198-300 40-142 (322)
416 PRK13975 thymidylate kinase; P 94.9 0.022 4.8E-07 52.6 3.3 26 211-236 3-28 (196)
417 COG1419 FlhF Flagellar GTP-bin 94.9 0.1 2.3E-06 52.7 8.2 36 210-245 203-240 (407)
418 PRK10751 molybdopterin-guanine 94.9 0.04 8.7E-07 49.5 4.8 28 209-236 5-32 (173)
419 PF07693 KAP_NTPase: KAP famil 94.9 0.081 1.7E-06 53.0 7.5 76 193-268 2-81 (325)
420 PRK09435 membrane ATPase/prote 94.9 0.048 1E-06 54.5 5.7 40 198-237 44-83 (332)
421 PLN02200 adenylate kinase fami 94.8 0.024 5.2E-07 54.0 3.4 25 210-234 43-67 (234)
422 TIGR02788 VirB11 P-type DNA tr 94.8 0.044 9.6E-07 54.5 5.4 107 210-327 144-253 (308)
423 PRK03731 aroL shikimate kinase 94.8 0.022 4.8E-07 51.3 3.0 24 212-235 4-27 (171)
424 cd01983 Fer4_NifH The Fer4_Nif 94.8 0.031 6.6E-07 44.5 3.5 25 212-236 1-25 (99)
425 cd00046 DEXDc DEAD-like helica 94.8 0.11 2.4E-06 44.1 7.2 34 212-245 2-37 (144)
426 PRK13768 GTPase; Provisional 94.8 0.035 7.6E-07 53.6 4.4 35 211-245 3-37 (253)
427 PHA02774 E1; Provisional 94.7 0.065 1.4E-06 56.8 6.5 48 195-245 420-467 (613)
428 TIGR03263 guanyl_kin guanylate 94.7 0.022 4.7E-07 51.8 2.7 24 211-234 2-25 (180)
429 TIGR02173 cyt_kin_arch cytidyl 94.7 0.025 5.5E-07 50.8 3.1 24 212-235 2-25 (171)
430 TIGR01650 PD_CobS cobaltochela 94.7 0.053 1.2E-06 53.7 5.5 50 186-239 44-93 (327)
431 TIGR02655 circ_KaiC circadian 94.7 0.072 1.6E-06 56.6 7.0 47 199-245 10-57 (484)
432 PRK00300 gmk guanylate kinase; 94.7 0.026 5.5E-07 52.6 3.2 26 210-235 5-30 (205)
433 cd03281 ABC_MSH5_euk MutS5 hom 94.7 0.15 3.3E-06 47.7 8.4 23 210-232 29-51 (213)
434 COG1124 DppF ABC-type dipeptid 94.7 0.03 6.5E-07 52.4 3.5 23 210-232 33-55 (252)
435 TIGR01818 ntrC nitrogen regula 94.7 0.7 1.5E-05 48.8 14.4 48 187-234 134-181 (463)
436 KOG0738 AAA+-type ATPase [Post 94.6 0.057 1.2E-06 53.8 5.4 73 160-236 189-271 (491)
437 TIGR00750 lao LAO/AO transport 94.6 0.054 1.2E-06 53.7 5.5 29 208-236 32-60 (300)
438 PRK05342 clpX ATP-dependent pr 94.6 0.037 8E-07 57.2 4.4 27 211-237 109-135 (412)
439 PRK14493 putative bifunctional 94.6 0.038 8.1E-07 53.8 4.2 34 211-245 2-35 (274)
440 cd03213 ABCG_EPDR ABCG transpo 94.6 0.15 3.2E-06 47.1 7.9 26 209-234 34-59 (194)
441 cd03233 ABC_PDR_domain1 The pl 94.6 0.15 3.3E-06 47.3 8.1 27 209-235 32-58 (202)
442 KOG1532 GTPase XAB1, interacts 94.6 0.034 7.4E-07 52.7 3.6 32 209-240 18-49 (366)
443 TIGR01287 nifH nitrogenase iro 94.6 0.034 7.4E-07 54.4 3.9 35 211-245 1-35 (275)
444 PRK14532 adenylate kinase; Pro 94.6 0.025 5.4E-07 51.9 2.8 23 213-235 3-25 (188)
445 cd01428 ADK Adenylate kinase ( 94.6 0.025 5.5E-07 52.0 2.8 22 213-234 2-23 (194)
446 cd01672 TMPK Thymidine monopho 94.5 0.07 1.5E-06 49.1 5.7 25 212-236 2-26 (200)
447 PF09848 DUF2075: Uncharacteri 94.5 0.1 2.2E-06 53.1 7.3 35 211-245 2-38 (352)
448 PRK14529 adenylate kinase; Pro 94.5 0.11 2.4E-06 48.9 7.0 91 213-308 3-96 (223)
449 PRK14737 gmk guanylate kinase; 94.5 0.032 7E-07 51.1 3.3 26 209-234 3-28 (186)
450 cd01857 HSR1_MMR1 HSR1/MMR1. 94.5 0.41 8.8E-06 41.5 10.2 52 57-113 3-54 (141)
451 PRK10078 ribose 1,5-bisphospho 94.5 0.025 5.5E-07 51.8 2.6 25 211-235 3-27 (186)
452 PF08298 AAA_PrkA: PrkA AAA do 94.5 0.048 1E-06 54.2 4.7 52 186-237 60-115 (358)
453 PF13521 AAA_28: AAA domain; P 94.5 0.028 6.1E-07 50.2 2.8 21 213-233 2-22 (163)
454 TIGR00041 DTMP_kinase thymidyl 94.5 0.08 1.7E-06 48.7 6.0 26 211-236 4-29 (195)
455 PRK05917 DNA polymerase III su 94.5 0.44 9.5E-06 46.6 11.2 126 197-344 7-154 (290)
456 PRK13657 cyclic beta-1,2-gluca 94.5 0.095 2E-06 57.3 7.4 26 209-234 360-385 (588)
457 TIGR00176 mobB molybdopterin-g 94.5 0.039 8.4E-07 48.9 3.6 26 212-237 1-26 (155)
458 PRK11174 cysteine/glutathione 94.4 0.1 2.2E-06 57.1 7.6 35 209-245 375-409 (588)
459 TIGR02525 plasmid_TraJ plasmid 94.4 0.065 1.4E-06 54.5 5.6 94 211-309 150-245 (372)
460 PRK05818 DNA polymerase III su 94.4 3.4 7.3E-05 39.7 16.7 56 289-344 88-147 (261)
461 PRK14531 adenylate kinase; Pro 94.4 0.032 7E-07 51.0 3.1 24 212-235 4-27 (183)
462 cd02034 CooC The accessory pro 94.4 0.05 1.1E-06 45.6 3.9 33 213-245 2-34 (116)
463 COG0237 CoaE Dephospho-CoA kin 94.4 0.033 7.1E-07 51.5 3.0 23 210-232 2-24 (201)
464 PF00006 ATP-synt_ab: ATP synt 94.4 0.037 8.1E-07 51.8 3.4 83 211-299 16-115 (215)
465 PRK06761 hypothetical protein; 94.4 0.044 9.4E-07 53.4 4.0 27 211-237 4-30 (282)
466 TIGR02782 TrbB_P P-type conjug 94.4 0.081 1.8E-06 52.3 6.0 87 211-307 133-222 (299)
467 COG1224 TIP49 DNA helicase TIP 94.4 0.068 1.5E-06 52.7 5.2 56 184-239 36-94 (450)
468 PRK13230 nitrogenase reductase 94.3 0.047 1E-06 53.6 4.1 35 211-245 2-36 (279)
469 PRK12338 hypothetical protein; 94.3 0.038 8.1E-07 54.7 3.4 26 210-235 4-29 (319)
470 PRK13407 bchI magnesium chelat 94.3 0.042 9E-07 55.1 3.7 50 183-234 4-53 (334)
471 PHA02530 pseT polynucleotide k 94.3 0.035 7.6E-07 55.0 3.2 24 211-234 3-26 (300)
472 KOG0066 eIF2-interacting prote 94.2 1.6 3.4E-05 44.5 14.5 25 210-234 613-637 (807)
473 COG1875 NYN ribonuclease and A 94.2 0.29 6.4E-06 48.6 9.3 40 190-231 227-266 (436)
474 COG0378 HypB Ni2+-binding GTPa 94.2 0.054 1.2E-06 49.0 3.9 36 210-245 13-48 (202)
475 PF06414 Zeta_toxin: Zeta toxi 94.2 0.066 1.4E-06 49.6 4.8 36 208-245 13-48 (199)
476 cd03114 ArgK-like The function 94.2 0.05 1.1E-06 47.8 3.7 26 212-237 1-26 (148)
477 KOG0726 26S proteasome regulat 94.2 0.055 1.2E-06 51.8 4.1 52 187-238 185-247 (440)
478 TIGR00073 hypB hydrogenase acc 94.2 0.051 1.1E-06 50.7 4.0 37 208-245 20-56 (207)
479 cd02040 NifH NifH gene encodes 94.2 0.059 1.3E-06 52.4 4.6 35 211-245 2-36 (270)
480 smart00534 MUTSac ATPase domai 94.2 0.072 1.6E-06 48.8 4.9 21 212-232 1-21 (185)
481 TIGR02238 recomb_DMC1 meiotic 94.2 0.094 2E-06 52.2 6.0 60 197-260 83-148 (313)
482 COG2842 Uncharacterized ATPase 94.2 0.28 6.1E-06 47.4 8.9 120 181-309 66-187 (297)
483 PF08477 Miro: Miro-like prote 94.2 0.038 8.1E-07 46.2 2.8 21 213-233 2-22 (119)
484 COG0194 Gmk Guanylate kinase [ 94.2 0.048 1E-06 49.0 3.5 25 210-234 4-28 (191)
485 PRK01184 hypothetical protein; 94.2 0.036 7.8E-07 50.6 2.9 23 211-234 2-24 (184)
486 TIGR00554 panK_bact pantothena 94.1 0.042 9E-07 53.9 3.4 28 208-235 60-87 (290)
487 COG2019 AdkA Archaeal adenylat 94.1 0.044 9.5E-07 48.2 3.1 25 210-234 4-28 (189)
488 PRK10875 recD exonuclease V su 94.1 0.28 6E-06 53.4 9.9 26 210-235 167-192 (615)
489 COG1763 MobB Molybdopterin-gua 94.1 0.052 1.1E-06 48.1 3.7 36 210-245 2-37 (161)
490 cd02117 NifH_like This family 94.1 0.053 1.2E-06 50.8 4.0 34 211-244 1-34 (212)
491 PF03029 ATP_bind_1: Conserved 94.1 0.044 9.4E-07 52.3 3.4 30 215-244 1-30 (238)
492 PLN02318 phosphoribulokinase/u 94.1 0.048 1E-06 57.9 4.0 29 206-234 61-89 (656)
493 PRK13695 putative NTPase; Prov 94.1 0.052 1.1E-06 49.1 3.7 24 212-235 2-25 (174)
494 TIGR00382 clpX endopeptidase C 94.1 0.064 1.4E-06 55.2 4.7 28 211-238 117-144 (413)
495 TIGR01351 adk adenylate kinase 94.1 0.038 8.2E-07 51.7 2.8 22 213-234 2-23 (210)
496 PRK09825 idnK D-gluconate kina 94.1 0.042 9.1E-07 49.9 3.0 25 211-235 4-28 (176)
497 TIGR02768 TraA_Ti Ti-type conj 94.0 0.16 3.4E-06 56.9 8.1 34 211-244 369-402 (744)
498 PLN02348 phosphoribulokinase 94.0 0.052 1.1E-06 55.0 3.9 29 208-236 47-75 (395)
499 smart00072 GuKc Guanylate kina 94.0 0.046 1E-06 50.0 3.3 29 210-238 2-30 (184)
500 cd02029 PRK_like Phosphoribulo 94.0 0.053 1.1E-06 52.0 3.7 34 212-245 1-34 (277)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.6e-93 Score=820.82 Aligned_cols=518 Identities=38% Similarity=0.613 Sum_probs=471.3
Q ss_pred CCCCCCCCCCCcccEEecCcccccCCchHHHHHHHHHhCCCceEecCCcCCCCcchHHHHHhhhhcceEEEEeecCccCc
Q 044627 1 MALSSSFCSPRKYDVFLSFRGEDTRNNFTSHLFAAFCREKIKAFIDEQLKKGDDISSALLNAIEESKISVIIFSKGYASS 80 (524)
Q Consensus 1 ~~~~~~~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s 80 (524)
||+|||++..++|||||||||+|+|++|++||+++|.++||.+|.|+++.+|+.|.+++.+||++|+++|||||++|++|
T Consensus 1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s 80 (1153)
T PLN03210 1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASS 80 (1153)
T ss_pred CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccc
Confidence 89999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhHhhcCCeeEeeEeEeccCcccccCCchHhHHhhhhhhcCCChHHHHHHHHHHHhcccccccCccccc
Q 044627 81 TWCLEELVKILECKKRKGQTVIPVFYNVDPSDVRNQTGSFGDAFVEHENDFRDMPQKVHKWRAALTQASNLCGWDSMTIR 160 (524)
Q Consensus 81 ~wc~~El~~~~~~~~~~~~~v~Pi~~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~ 160 (524)
.||++||++|++|++..++.|+||||+|+|+|||+|+|.||++|.++..+. ..+++++|++||+++++++|+++..+.
T Consensus 81 ~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~ 158 (1153)
T PLN03210 81 SWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWP 158 (1153)
T ss_pred hHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCC
Confidence 999999999999999899999999999999999999999999999887654 345799999999999999999998889
Q ss_pred chhhhHHHHHhhccccccccccCCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccc
Q 044627 161 HEAELVDEIVKDILKKIHDISHFGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEG 240 (524)
Q Consensus 161 ~e~~~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~ 240 (524)
+|+++|++|+++|+++++. +++...+.+|||+.+++++..+|..+.+++++|+|+||||+||||||+++|+++..+|++
T Consensus 159 ~E~~~i~~Iv~~v~~~l~~-~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g 237 (1153)
T PLN03210 159 NEAKMIEEIANDVLGKLNL-TPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS 237 (1153)
T ss_pred CHHHHHHHHHHHHHHhhcc-ccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe
Confidence 9999999999999999988 888888999999999999999998777789999999999999999999999999999999
Q ss_pred eeEeeee--cc---ccc------ccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChhhHHHHhC
Q 044627 241 RSFMANV--RE---ESK------RVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFGHSEYLTG 309 (524)
Q Consensus 241 ~~wv~~~--~~---~~~------~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~ 309 (524)
.+|+.+. .. ... ......++.+++..+..... ........+++.|.++|+||||||||+..+++.+..
T Consensus 238 ~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~-~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~ 316 (1153)
T PLN03210 238 SVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKD-IKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAG 316 (1153)
T ss_pred EEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCC-cccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHh
Confidence 9998642 11 000 01123455666666654332 111123678889999999999999999999999998
Q ss_pred CCCCCCCCcEEEEecCChhhhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 044627 310 GLSRFGHGSRVIVTTRDKKVLDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLR 389 (524)
Q Consensus 310 ~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 389 (524)
...++++|++||||||+..++..++..++|+++.|+.++|++||+++||+...++.++.+++.+|+++|+|+||||+++|
T Consensus 317 ~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlg 396 (1153)
T PLN03210 317 QTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLG 396 (1153)
T ss_pred hCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 88888999999999999999988778889999999999999999999998877777788999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHhcCCCCCCccHHHHHHHhHhcCCh-HHHHHHhhcccccCCCCHHHHHHHHhhc-cchhHhHHHHh
Q 044627 390 SSFYRKSKQHWENALHNPKQISDPDIHDMLKISYDELNY-KEKDLFLDIACFFNGEGRDYVKIILNNR-YLVHYGLNILA 467 (524)
Q Consensus 390 ~~l~~~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~-~~k~~~~~la~f~~~~~~~~l~~l~~~~-~~~~~~l~~L~ 467 (524)
++|++++..+|..++.+++..++..|..+|++||+.|++ .+|.+|+++||||.+.+.+.+..++..+ ..+..+++.|+
T Consensus 397 s~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~ 476 (1153)
T PLN03210 397 SYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLV 476 (1153)
T ss_pred HHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHH
Confidence 999999999999999999988888999999999999987 5999999999999999999998888888 88888999999
Q ss_pred hCCceEEeCCeEEccHHHHHHHHHHHhhhCCCCCCCccccccCcchHHHHhhhCCCC
Q 044627 468 GKALITISNNKLQMRDLLQEMGQRVVCHESYKDPGKYSSCLWYHEDVYHVRKKNKVS 524 (524)
Q Consensus 468 ~~sLi~~~~~~~~mH~lv~~~~~~i~~~e~~~~~~~r~r~lw~~~~~~~~l~~~~~~ 524 (524)
++|||++.++++.||||+|+||++++++++ .+|++|+| ||+++||+++|++++|.
T Consensus 477 ~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~-l~~~~di~~vl~~~~g~ 531 (1153)
T PLN03210 477 DKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREF-LVDAKDICDVLEDNTGT 531 (1153)
T ss_pred hcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCccee-EeCHHHHHHHHHhCccc
Confidence 999999988899999999999999999998 78999999 99999999999999884
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-44 Score=397.24 Aligned_cols=299 Identities=24% Similarity=0.319 Sum_probs=268.3
Q ss_pred cchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhh---hcccccceeEeeeecccccccCHHHHHHHHHHH
Q 044627 190 VGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQ---ISSQFEGRSFMANVREESKRVELEHLRDQILSQ 266 (524)
Q Consensus 190 vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~ 266 (524)
||.+..++.+.+.|..+. ..+++|+||||+||||||++++++ +..+|+.++|+. +|+..+...++.+|+..
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 999999999999998754 389999999999999999999994 678999999999 99999999999999999
Q ss_pred HhCCCCcc----cCCchHHHHHHhccCCeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCChhhhhh-cCCCeEEEc
Q 044627 267 ILGENIIK----TSIPPRYINKRLQQMKVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDK-YGVDYVYKV 341 (524)
Q Consensus 267 l~~~~~~~----~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~-~~~~~~~~l 341 (524)
++...... .++....+.+.|.++|+||||||||+..+|+.+..+++...+||+|++|||+..++.. ++....+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 88755422 3577888999999999999999999999999999999988789999999999999998 788889999
Q ss_pred CCCCHHHHHHHHHHhhhcCC-CCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCC-CHHHHHHHHhcCCCC-----C--C
Q 044627 342 EGFNYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRK-SKQHWENALHNPKQI-----S--D 412 (524)
Q Consensus 342 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~-~~~~w~~~l~~l~~~-----~--~ 412 (524)
+.|+.+|||.||.+.++... ...+..++++++++++|+|+|||+.++|+.|+.+ +..+|+.+...+... + .
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999998764 3335589999999999999999999999999985 678999999988764 1 3
Q ss_pred ccHHHHHHHhHhcCChHHHHHHhhcccccCC--CCHHHHHHHHhhc-cc------------hhHhHHHHhhCCceEEeC-
Q 044627 413 PDIHDMLKISYDELNYKEKDLFLDIACFFNG--EGRDYVKIILNNR-YL------------VHYGLNILAGKALITISN- 476 (524)
Q Consensus 413 ~~i~~~l~~s~~~L~~~~k~~~~~la~f~~~--~~~~~l~~l~~~~-~~------------~~~~l~~L~~~sLi~~~~- 476 (524)
+.+..++.+||+.||++.|.||+|||+||.+ ++.+.++.+|.++ +. ..+++++|++++|+....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 5788999999999999999999999999999 7899999999997 43 335699999999999873
Q ss_pred ----CeEEccHHHHHHHHHHHh
Q 044627 477 ----NKLQMRDLLQEMGQRVVC 494 (524)
Q Consensus 477 ----~~~~mH~lv~~~~~~i~~ 494 (524)
..+.|||+||+||..++.
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhc
Confidence 559999999999999998
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1.8e-41 Score=297.87 Aligned_cols=159 Identities=30% Similarity=0.532 Sum_probs=144.3
Q ss_pred CCCCCCCCcccEEecCcccccCCchHHHHHHHHHhCCCceEecC-CcCCCCcchHHHHHhhhhcceEEEEeecCccCchh
Q 044627 4 SSSFCSPRKYDVFLSFRGEDTRNNFTSHLFAAFCREKIKAFIDE-QLKKGDDISSALLNAIEESKISVIIFSKGYASSTW 82 (524)
Q Consensus 4 ~~~~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~w 82 (524)
+||++...+|||||||+|+|++.+|++||+++|+++||+||+|+ ++.+|+.|.++|.+||++|+++|+||||+|++|+|
T Consensus 18 ~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~W 97 (187)
T PLN03194 18 PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYF 97 (187)
T ss_pred ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchh
Confidence 45667788999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhHhhcCCeeEeeEeEeccCccccc-CCchHhHHhhhhhhcCCChHHHHHHHHHHHhcccccccCccc-cc
Q 044627 83 CLEELVKILECKKRKGQTVIPVFYNVDPSDVRNQ-TGSFGDAFVEHENDFRDMPQKVHKWRAALTQASNLCGWDSMT-IR 160 (524)
Q Consensus 83 c~~El~~~~~~~~~~~~~v~Pi~~~v~p~~vr~~-~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~-~~ 160 (524)
|++||++|+++. ..|+||||+|+|+|||+| .|. ...+++++|++||+++++++|+++.. .+
T Consensus 98 CLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~ 160 (187)
T PLN03194 98 CLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKG 160 (187)
T ss_pred HHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 999999999864 479999999999999997 432 13468999999999999999998753 57
Q ss_pred chhhhHHHHHhhccccccc
Q 044627 161 HEAELVDEIVKDILKKIHD 179 (524)
Q Consensus 161 ~e~~~i~~i~~~v~~~l~~ 179 (524)
+|+++|++|++.|.+.|-.
T Consensus 161 ~e~e~i~~iv~~v~k~l~~ 179 (187)
T PLN03194 161 NWSEVVTMASDAVIKNLIE 179 (187)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 8999999999999987643
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.2e-40 Score=327.62 Aligned_cols=261 Identities=29% Similarity=0.406 Sum_probs=209.3
Q ss_pred hhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhh--hcccccceeEeeeecccccccCHHHHHHHHHHHHhC
Q 044627 192 VDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQ--ISSQFEGRSFMANVREESKRVELEHLRDQILSQILG 269 (524)
Q Consensus 192 R~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~ 269 (524)
||.++++|.+.|....++.++|+|+||||+||||||.+++++ +..+|+.++|+. .+...+...++..++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccc
Confidence 789999999999986678999999999999999999999998 889999999999 55566668889999999987
Q ss_pred CCCc-----ccCCchHHHHHHhccCCeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCChhhhhhcCC-CeEEEcCC
Q 044627 270 ENII-----KTSIPPRYINKRLQQMKVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGV-DYVYKVEG 343 (524)
Q Consensus 270 ~~~~-----~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~-~~~~~l~~ 343 (524)
...+ ........+.+.|.++++|||||||++...++.+...++....|++||||||+..++...+. ...++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7431 24456788889999999999999999999998888777766779999999999988776544 67899999
Q ss_pred CCHHHHHHHHHHhhhcCC-CCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCC-CHHHHHHHHhcCCCC------CCccH
Q 044627 344 FNYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRK-SKQHWENALHNPKQI------SDPDI 415 (524)
Q Consensus 344 L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~-~~~~w~~~l~~l~~~------~~~~i 415 (524)
|+.+||++||.+.++... ...+...+.+++|++.|+|+||||+++|++|+.+ +..+|..+++++... ....+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999987655 3334556789999999999999999999999542 567788887664432 24679
Q ss_pred HHHHHHhHhcCChHHHHHHhhcccccCC--CCHHHHHHHHhhc
Q 044627 416 HDMLKISYDELNYKEKDLFLDIACFFNG--EGRDYVKIILNNR 456 (524)
Q Consensus 416 ~~~l~~s~~~L~~~~k~~~~~la~f~~~--~~~~~l~~l~~~~ 456 (524)
..++..||+.|+++.|.||++||+||.+ ++.+.++.+|.++
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e 279 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAE 279 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHC
Confidence 9999999999999999999999999988 6799999999987
No 5
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.84 E-value=5.8e-22 Score=174.04 Aligned_cols=132 Identities=35% Similarity=0.582 Sum_probs=114.5
Q ss_pred EEecCcccccCCchHHHHHHHHHhC--CCceEecC-CcCCCCcchHHHHHhhhhcceEEEEeecCccCchhhHHHHHHHH
Q 044627 15 VFLSFRGEDTRNNFTSHLFAAFCRE--KIKAFIDE-QLKKGDDISSALLNAIEESKISVIIFSKGYASSTWCLEELVKIL 91 (524)
Q Consensus 15 vFis~~~~D~~~~~~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~~ 91 (524)
|||||++.|.+..|+++|..+|++. |+++|+++ |+.+|..+.++|.++|++|+++|+|+|++|++|+||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 7999999333456999999999999 99999998 99999999999999999999999999999999999999999999
Q ss_pred HhHhhcC--CeeEeeEeEeccCccc-ccCCchHhHHhhhhhhcCCC--hHHHHHHHHHHH
Q 044627 92 ECKKRKG--QTVIPVFYNVDPSDVR-NQTGSFGDAFVEHENDFRDM--PQKVHKWRAALT 146 (524)
Q Consensus 92 ~~~~~~~--~~v~Pi~~~v~p~~vr-~~~g~~~~~~~~~~~~~~~~--~~~~~~w~~al~ 146 (524)
++....+ ..|+|+||++.+++++ .+.+.|...+.....-..+. ..+...|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9996544 8899999999999999 78888998888777766654 567889988764
No 6
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.83 E-value=2.9e-20 Score=163.33 Aligned_cols=136 Identities=40% Similarity=0.707 Sum_probs=113.8
Q ss_pred cccEEecCcc-cccCCchHHHHHHHHHhCCCceEecCCcCCCCcchHHHHHhhhhcceEEEEeecCccCchhhHHHHHHH
Q 044627 12 KYDVFLSFRG-EDTRNNFTSHLFAAFCREKIKAFIDEQLKKGDDISSALLNAIEESKISVIIFSKGYASSTWCLEELVKI 90 (524)
Q Consensus 12 ~~dvFis~~~-~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~ 90 (524)
.|||||||++ ++....|+.+|...|...|+.+|.|+....|..+ .+|.++|++|+++|+|+||+|+.|+||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 4999999999 4455789999999999999999998743333333 3999999999999999999999999999999999
Q ss_pred HHhHhh-cCCeeEeeEeEeccCcccccCCchHhHHhhhhhhcCCChHHHHHHHHHHHhcc
Q 044627 91 LECKKR-KGQTVIPVFYNVDPSDVRNQTGSFGDAFVEHENDFRDMPQKVHKWRAALTQAS 149 (524)
Q Consensus 91 ~~~~~~-~~~~v~Pi~~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~ 149 (524)
..+... ...+||||+++..|+++..+.+.++..+..+.....+...+ ..|+..+..++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 998743 66899999999889889999999999998875555555433 68988887654
No 7
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.69 E-value=4e-15 Score=170.24 Aligned_cols=293 Identities=11% Similarity=0.114 Sum_probs=191.7
Q ss_pred ccCCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccc-cccCHHHH
Q 044627 181 SHFGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREES-KRVELEHL 259 (524)
Q Consensus 181 ~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~l 259 (524)
.||..+..+|-|..-++.+.. ....+++.|+|++|.||||++.+++++. +.++|+. .. ...+...+
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~----l~~~d~~~~~f 74 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS----LDESDNQPERF 74 (903)
T ss_pred CCCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe----cCcccCCHHHH
Confidence 456677889999877776643 2357899999999999999999988643 2688997 33 23455566
Q ss_pred HHHHHHHHhCCCCc----c--------cCCch---HHHHHHhc--cCCeEEEecCCCChh------hHHHHhCCCCCCCC
Q 044627 260 RDQILSQILGENII----K--------TSIPP---RYINKRLQ--QMKVCIILDNVDKFG------HSEYLTGGLSRFGH 316 (524)
Q Consensus 260 ~~~ll~~l~~~~~~----~--------~~~~~---~~l~~~L~--~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~ 316 (524)
...++..+...... . ..... ..+...+. +.+++|||||+...+ .+..+... ..+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~ 151 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPE 151 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCC
Confidence 66666666422111 0 01111 12222232 579999999995432 23334433 346
Q ss_pred CcEEEEecCChhhhhh--c-CCCeEEEcC----CCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 044627 317 GSRVIVTTRDKKVLDK--Y-GVDYVYKVE----GFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLR 389 (524)
Q Consensus 317 gs~IIiTTR~~~~~~~--~-~~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 389 (524)
+.++|||||....... . -.....++. +|+.+|+.+||....+.. -..+.+.++.+.|+|+|+++..++
T Consensus 152 ~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~ 226 (903)
T PRK04841 152 NLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIA 226 (903)
T ss_pred CeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHH
Confidence 7789899998422211 0 012234555 899999999998764321 124557899999999999999998
Q ss_pred HHhcCCCHHHHHHHHhcCCCCCCccHHHHHHHh-HhcCChHHHHHHhhcccccCCCCHHHHHHHHhhccchhHhHHHHhh
Q 044627 390 SSFYRKSKQHWENALHNPKQISDPDIHDMLKIS-YDELNYKEKDLFLDIACFFNGEGRDYVKIILNNRYLVHYGLNILAG 468 (524)
Q Consensus 390 ~~l~~~~~~~w~~~l~~l~~~~~~~i~~~l~~s-~~~L~~~~k~~~~~la~f~~~~~~~~l~~l~~~~~~~~~~l~~L~~ 468 (524)
..+...... .......+...+...+...+.-. ++.||++.+.+++.+|+++ .++.+.+..+... ..+...++.|.+
T Consensus 227 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~-~~~~~~L~~l~~ 303 (903)
T PRK04841 227 LSARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE-ENGQMRLEELER 303 (903)
T ss_pred HHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC-CcHHHHHHHHHH
Confidence 776543210 01111222222234466654444 8999999999999999986 7776666655542 355778999999
Q ss_pred CCceEEe--C--CeEEccHHHHHHHHHHHhhhC
Q 044627 469 KALITIS--N--NKLQMRDLLQEMGQRVVCHES 497 (524)
Q Consensus 469 ~sLi~~~--~--~~~~mH~lv~~~~~~i~~~e~ 497 (524)
.+|+... + ..|++|+|++++.+.....+.
T Consensus 304 ~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~ 336 (903)
T PRK04841 304 QGLFIQRMDDSGEWFRYHPLFASFLRHRCQWEL 336 (903)
T ss_pred CCCeeEeecCCCCEEehhHHHHHHHHHHHHhcC
Confidence 9997643 2 369999999999999886654
No 8
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.63 E-value=1.1e-16 Score=132.37 Aligned_cols=87 Identities=31% Similarity=0.607 Sum_probs=75.5
Q ss_pred EEecCcccccCCchHHHHHHHHHhCCCceEecCCcCCCCcchHHHHHhhhhcceEEEEeecCccCchhhHHHHHHHHHhH
Q 044627 15 VFLSFRGEDTRNNFTSHLFAAFCREKIKAFIDEQLKKGDDISSALLNAIEESKISVIIFSKGYASSTWCLEELVKILECK 94 (524)
Q Consensus 15 vFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~~~~~ 94 (524)
|||||+++| ..++.+|...|+.+|+++|+|.++.+|+.+.+.|.++|++|+..|+++|++|..|+||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 899999999 5699999999999999999998899999999999999999999999999999999999999998843
Q ss_pred hhcCCeeEeeEeE
Q 044627 95 KRKGQTVIPVFYN 107 (524)
Q Consensus 95 ~~~~~~v~Pi~~~ 107 (524)
.+..|+||.++
T Consensus 77 --~~~~iipv~~~ 87 (102)
T PF13676_consen 77 --RGKPIIPVRLD 87 (102)
T ss_dssp --TSESEEEEECS
T ss_pred --CCCEEEEEEEC
Confidence 44589999854
No 9
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.48 E-value=6.8e-12 Score=129.79 Aligned_cols=284 Identities=14% Similarity=0.019 Sum_probs=169.0
Q ss_pred ccCCCCCCccchhhhHHhhhhhhhcC--CCCceEEEeeccccchHHHHHHHHHhhhccccc--ceeEeeeecccccccCH
Q 044627 181 SHFGNSEDLVGVDSHIQRINSLLCIG--LPDFRMVRPWDMHGIAKTDIARAILNQISSQFE--GRSFMANVREESKRVEL 256 (524)
Q Consensus 181 ~~~~~~~~~vGR~~el~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~ 256 (524)
.+...++.|+||+.++++|...|... ......+.|+|++|+|||++++.+++.+....+ ..+++. .....+.
T Consensus 24 ~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~~ 99 (394)
T PRK00411 24 EPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRTR 99 (394)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCCH
Confidence 34456788999999999999998542 233456789999999999999999998765542 234444 3333456
Q ss_pred HHHHHHHHHHHhCCCC-cc---cCCchHHHHHHhc--cCCeEEEecCCCChh------hHHHHhCCCCCCCC-CcEEEEe
Q 044627 257 EHLRDQILSQILGENI-IK---TSIPPRYINKRLQ--QMKVCIILDNVDKFG------HSEYLTGGLSRFGH-GSRVIVT 323 (524)
Q Consensus 257 ~~l~~~ll~~l~~~~~-~~---~~~~~~~l~~~L~--~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~-gs~IIiT 323 (524)
..++..++.++.+... .. ..+....+.+.+. +++.+||||+++... .+..+......... ...+|.+
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i 179 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGI 179 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEE
Confidence 7788888888876322 11 2333455555554 346899999997643 34444433221111 2235556
Q ss_pred cCChhhhhhcC-------CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHH----hcCChHHHHHHHHHh
Q 044627 324 TRDKKVLDKYG-------VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDY----ANGSSLALNVLRSSF 392 (524)
Q Consensus 324 TR~~~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~----~~g~PLal~~~~~~l 392 (524)
+.+..+..... ....+.+++++.++..+++..++.....+..-..+.++.+++. .|..+.|+.++-...
T Consensus 180 ~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 180 SSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred ECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 55443322111 1246799999999999999877532111111112333444444 455777877664322
Q ss_pred -----cC---CCHHHHHHHHhcCCCCCCccHHHHHHHhHhcCChHHHHHHhhccccc----CCCCHHHHHHHHh----hc
Q 044627 393 -----YR---KSKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFF----NGEGRDYVKIILN----NR 456 (524)
Q Consensus 393 -----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~----~~~~~~~l~~l~~----~~ 456 (524)
.+ -+.+....++.... ...+.-.+..||.++|.++..++... ..+....+..... ..
T Consensus 260 ~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 260 LIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 11 14555555555441 23345568899999998887776443 2244444332211 11
Q ss_pred -c------chhHhHHHHhhCCceEEe
Q 044627 457 -Y------LVHYGLNILAGKALITIS 475 (524)
Q Consensus 457 -~------~~~~~l~~L~~~sLi~~~ 475 (524)
. .....++.|...|||...
T Consensus 333 ~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 333 GYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 1 123579999999999964
No 10
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.43 E-value=1.1e-11 Score=131.44 Aligned_cols=295 Identities=12% Similarity=0.112 Sum_probs=194.3
Q ss_pred ccCCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHH
Q 044627 181 SHFGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLR 260 (524)
Q Consensus 181 ~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 260 (524)
.+|..+.+.|-|..-+..+.+. .+.+.+.|..++|.|||||+.+.+. ....-..+.|++- ...+.+...+.
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsl---de~dndp~rF~ 83 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSL---DESDNDPARFL 83 (894)
T ss_pred CCCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeec---CCccCCHHHHH
Confidence 4456677888888776666543 3579999999999999999999988 4444567899982 23356778888
Q ss_pred HHHHHHHhCCCCcc-----------cCC----chHHHHHHhc--cCCeEEEecCCC---Ch---hhHHHHhCCCCCCCCC
Q 044627 261 DQILSQILGENIIK-----------TSI----PPRYINKRLQ--QMKVCIILDNVD---KF---GHSEYLTGGLSRFGHG 317 (524)
Q Consensus 261 ~~ll~~l~~~~~~~-----------~~~----~~~~l~~~L~--~~~~LlVlDdv~---~~---~~~~~l~~~~~~~~~g 317 (524)
..++..+....++. ... ....+...+. .++.+|||||.. ++ ..++.|+...| ++
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P---~~ 160 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP---EN 160 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC---CC
Confidence 88888887544422 111 1222222222 358899999994 22 23556665544 78
Q ss_pred cEEEEecCChhhhhhcC---CCeEEEcC----CCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHH
Q 044627 318 SRVIVTTRDKKVLDKYG---VDYVYKVE----GFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRS 390 (524)
Q Consensus 318 s~IIiTTR~~~~~~~~~---~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 390 (524)
-.+|+|||+..-+.... .....+++ .|+.+|+.++|..... .+-....++.+.+.++|-+-|+.+++=
T Consensus 161 l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-----l~Ld~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-----LPLDAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred eEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-----CCCChHHHHHHHhhcccHHHHHHHHHH
Confidence 89999999864332211 01223333 4899999999987641 112244588999999999999999988
Q ss_pred HhcC-CCHHHHHHHHhcCCCCCCccHHH-HHHHhHhcCChHHHHHHhhcccccCCCCHHHHHHHHhhccchhHhHHHHhh
Q 044627 391 SFYR-KSKQHWENALHNPKQISDPDIHD-MLKISYDELNYKEKDLFLDIACFFNGEGRDYVKIILNNRYLVHYGLNILAG 468 (524)
Q Consensus 391 ~l~~-~~~~~w~~~l~~l~~~~~~~i~~-~l~~s~~~L~~~~k~~~~~la~f~~~~~~~~l~~l~~~~~~~~~~l~~L~~ 468 (524)
.+++ .+.+.-.. .+... ...+.+ ..+--++.||++.|.+++-+|++. .++-+....+.+ .......++.|.+
T Consensus 236 a~~~~~~~~q~~~---~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~-~f~~eL~~~Ltg-~~ng~amLe~L~~ 309 (894)
T COG2909 236 ALRNNTSAEQSLR---GLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLS-RFNDELCNALTG-EENGQAMLEELER 309 (894)
T ss_pred HccCCCcHHHHhh---hccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH-HhhHHHHHHHhc-CCcHHHHHHHHHh
Confidence 8873 33332211 11111 111222 244558999999999999999983 233333333332 2345556999999
Q ss_pred CCceEEe----CCeEEccHHHHHHHHHHHhhhCC
Q 044627 469 KALITIS----NNKLQMRDLLQEMGQRVVCHESY 498 (524)
Q Consensus 469 ~sLi~~~----~~~~~mH~lv~~~~~~i~~~e~~ 498 (524)
++|.-.. ++.|+.|.|..+|.+...+.+.+
T Consensus 310 ~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~ 343 (894)
T COG2909 310 RGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELA 343 (894)
T ss_pred CCCceeeecCCCceeehhHHHHHHHHhhhccccC
Confidence 9998854 56699999999999988887643
No 11
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.41 E-value=2e-12 Score=123.34 Aligned_cols=194 Identities=13% Similarity=0.167 Sum_probs=102.4
Q ss_pred ccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHH------HHH
Q 044627 189 LVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHL------RDQ 262 (524)
Q Consensus 189 ~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l------~~~ 262 (524)
|+||+.|+++|.+++..+ ..+.+.|+|+.|+|||+|++++.+........++|+....... ......+ ...
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESN-ESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSH-HHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchh-hhHHHHHHHHHHHHHH
Confidence 799999999999999763 3578899999999999999999998754433455555222111 1111111 111
Q ss_pred HHHHHhC----CCC--------cccCCchHHHHHHhcc--CCeEEEecCCCChh----h-------HHHHhCCCCCCCCC
Q 044627 263 ILSQILG----ENI--------IKTSIPPRYINKRLQQ--MKVCIILDNVDKFG----H-------SEYLTGGLSRFGHG 317 (524)
Q Consensus 263 ll~~l~~----~~~--------~~~~~~~~~l~~~L~~--~~~LlVlDdv~~~~----~-------~~~l~~~~~~~~~g 317 (524)
+...+.. ... .........+.+.+.. ++++||+|+++... . +..+........+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 1111211 110 1122333444444443 46999999996554 1 22222222212233
Q ss_pred cEEEEecCChhhhhh--------cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHH
Q 044627 318 SRVIVTTRDKKVLDK--------YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNV 387 (524)
Q Consensus 318 s~IIiTTR~~~~~~~--------~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 387 (524)
+ +++++....+... .+....+.|++|+.+++.+++....-..... +...+..++|+..+||+|..|..
T Consensus 158 ~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 S-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp E-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred e-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 4 4444444433332 2333459999999999999998865332111 12355679999999999998864
No 12
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.40 E-value=1.1e-11 Score=123.49 Aligned_cols=266 Identities=14% Similarity=0.123 Sum_probs=155.3
Q ss_pred CCccchhhhHHhhhhhhhcC---CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHH
Q 044627 187 EDLVGVDSHIQRINSLLCIG---LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQI 263 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~---~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 263 (524)
..|||++..++.|..++... ......+.|+|++|+|||+||+.+++.+...+. ... .........+ ...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~----~~~~~~~~~l-~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS----GPALEKPGDL-AAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec----cchhcCchhH-HHH
Confidence 46999999999999988641 223556889999999999999999998764432 111 1000111111 111
Q ss_pred HHHHhCCCC---c----ccCCchHHHHHHhccCCeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCChhhhhhc--C
Q 044627 264 LSQILGENI---I----KTSIPPRYINKRLQQMKVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKY--G 334 (524)
Q Consensus 264 l~~l~~~~~---~----~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~--~ 334 (524)
+..+..... + ......+.+...+.+.+..+|+++..+..++... ..+.+-|..||+...+.... .
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHhh
Confidence 222211110 0 0111122333344444445555554333332211 12345566677764332221 1
Q ss_pred CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCCCHHHHHHHH-hcCCCCCC-
Q 044627 335 VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRKSKQHWENAL-HNPKQISD- 412 (524)
Q Consensus 335 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l-~~l~~~~~- 412 (524)
....+.+++++.++..+++.+.+..... .-..+.+..|++.|+|.|-.+..++..+ |..+. ..-.....
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~~ 220 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINRD 220 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCHH
Confidence 2346799999999999999987754322 1235667899999999997665554432 11110 00011111
Q ss_pred --ccHHHHHHHhHhcCChHHHHHHh-hcccccCC-CCHHHHHHHHhhc-cchhHhHH-HHhhCCceEEe
Q 044627 413 --PDIHDMLKISYDELNYKEKDLFL-DIACFFNG-EGRDYVKIILNNR-YLVHYGLN-ILAGKALITIS 475 (524)
Q Consensus 413 --~~i~~~l~~s~~~L~~~~k~~~~-~la~f~~~-~~~~~l~~l~~~~-~~~~~~l~-~L~~~sLi~~~ 475 (524)
......+...|..|+..++..|. .++.+..+ ++.+.+...++.. ..+...++ .|++++||...
T Consensus 221 ~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 221 IALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 11222245567888888888777 55666544 7788888888888 77888888 69999999754
No 13
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.39 E-value=1e-10 Score=119.70 Aligned_cols=283 Identities=18% Similarity=0.107 Sum_probs=162.9
Q ss_pred cCCCCCCccchhhhHHhhhhhhhc--CCCCceEEEeeccccchHHHHHHHHHhhhccccc------ceeEeeeecccccc
Q 044627 182 HFGNSEDLVGVDSHIQRINSLLCI--GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFE------GRSFMANVREESKR 253 (524)
Q Consensus 182 ~~~~~~~~vGR~~el~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~wv~~~~~~~~~ 253 (524)
+...|+.|+||+.++++|...|.. .......+.|+|++|+|||++++.+++.+..... ..+|+. ....
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~ 85 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQIL 85 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCC
Confidence 344567899999999999999875 1233567899999999999999999987653322 234444 3333
Q ss_pred cCHHHHHHHHHHHHhC---CCCcc---cCCchHHHHHHhc--cCCeEEEecCCCChh-----hHHHHhCC--CCCC-CCC
Q 044627 254 VELEHLRDQILSQILG---ENIIK---TSIPPRYINKRLQ--QMKVCIILDNVDKFG-----HSEYLTGG--LSRF-GHG 317 (524)
Q Consensus 254 ~~~~~l~~~ll~~l~~---~~~~~---~~~~~~~l~~~L~--~~~~LlVlDdv~~~~-----~~~~l~~~--~~~~-~~g 317 (524)
.+...++..++.++.. ..+.. ..+....+.+.+. +++++||||+++... .+..+... .... +..
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~ 165 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK 165 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe
Confidence 4566788888888742 11111 1222344445553 457899999997651 13333322 1111 123
Q ss_pred cEEEEecCChhhhhhcC-------CCeEEEcCCCCHHHHHHHHHHhhh---cCCCCCccHHHHHHHHHHHhcCCh-HHHH
Q 044627 318 SRVIVTTRDKKVLDKYG-------VDYVYKVEGFNYRESLEIFCYYAF---RQNHCPGDLLVLSDNVVDYANGSS-LALN 386 (524)
Q Consensus 318 s~IIiTTR~~~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~---~~~~~~~~~~~~~~~i~~~~~g~P-Lal~ 386 (524)
..+|.+|.......... ....+.+++++.++..+++..++. ......++..+.+..++..+.|.| .|+.
T Consensus 166 v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~ 245 (365)
T TIGR02928 166 VGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAID 245 (365)
T ss_pred EEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHH
Confidence 34455554443221110 124688999999999999987763 112222233344556677777887 4444
Q ss_pred HHHHHh-----cC---CCHHHHHHHHhcCCCCCCccHHHHHHHhHhcCChHHHHHHhhcccccC----CCCHHHHHHHH-
Q 044627 387 VLRSSF-----YR---KSKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFFN----GEGRDYVKIIL- 453 (524)
Q Consensus 387 ~~~~~l-----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~----~~~~~~l~~l~- 453 (524)
++-... .+ -+.+....+...+. .....-++..||.+++.++..++.... .+....+..-.
T Consensus 246 ~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 246 LLRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 332211 11 23444444444331 233456678999988877776653221 13333333311
Q ss_pred hhc----------cchhHhHHHHhhCCceEEe
Q 044627 454 NNR----------YLVHYGLNILAGKALITIS 475 (524)
Q Consensus 454 ~~~----------~~~~~~l~~L~~~sLi~~~ 475 (524)
..+ ......++.|...|||+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 319 EVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 111 1234579999999999976
No 14
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.39 E-value=1e-11 Score=124.97 Aligned_cols=271 Identities=13% Similarity=0.087 Sum_probs=157.0
Q ss_pred CCCCCCccchhhhHHhhhhhhhc---CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCI---GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHL 259 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 259 (524)
|.....|+|++..++.+..++.. .....+.+.|+|++|+|||+||+.+++.+...+. +.. ....... ..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~~~----~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALEKP----GD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccccCh----HH
Confidence 34557799999999999888864 2234567889999999999999999998764321 111 0001111 11
Q ss_pred HHHHHHHHhCCCC---c-c---cCCchHHHHHHhccCCeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCChhhhhh
Q 044627 260 RDQILSQILGENI---I-K---TSIPPRYINKRLQQMKVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDK 332 (524)
Q Consensus 260 ~~~ll~~l~~~~~---~-~---~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~ 332 (524)
...++..+..... + + .....+.+...+.+.+..+|+|+..+..++.. . ..+.+-|..|++...+...
T Consensus 93 l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~---l~~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 93 LAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---D---LPPFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---c---CCCceEEeecCCcccCCHH
Confidence 1122222211100 0 0 01111222233333344444444332222111 0 1134556667775433222
Q ss_pred c--CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCCCHHHHHHHHhcCCCC
Q 044627 333 Y--GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRKSKQHWENALHNPKQI 410 (524)
Q Consensus 333 ~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l~~l~~~ 410 (524)
. .....+++++++.++..+++.+.+...... -..+.+..|++.|+|.|-.+..+...+. .|..... -...
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~-~~~I 238 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKG-DGVI 238 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcC-CCCC
Confidence 1 123468999999999999999887543321 2346789999999999965554444321 1211110 0111
Q ss_pred CC---ccHHHHHHHhHhcCChHHHHHHh-hcccccCC-CCHHHHHHHHhhc-cchhHhHH-HHhhCCceEEe
Q 044627 411 SD---PDIHDMLKISYDELNYKEKDLFL-DIACFFNG-EGRDYVKIILNNR-YLVHYGLN-ILAGKALITIS 475 (524)
Q Consensus 411 ~~---~~i~~~l~~s~~~L~~~~k~~~~-~la~f~~~-~~~~~l~~l~~~~-~~~~~~l~-~L~~~sLi~~~ 475 (524)
.. ......+...+..|++..+..+. .+..|..+ +..+.+...+... ..+++.++ .|++.+||+..
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 11 22334455667888888888886 66667655 7889999999888 77777888 99999999754
No 15
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.34 E-value=1.3e-11 Score=137.41 Aligned_cols=323 Identities=11% Similarity=0.144 Sum_probs=195.7
Q ss_pred CccchhhhHHhhhhhhhcCC-CCceEEEeeccccchHHHHHHHHHhhhccccc---ceeEeeeecccccccCHHHHHHHH
Q 044627 188 DLVGVDSHIQRINSLLCIGL-PDFRMVRPWDMHGIAKTDIARAILNQISSQFE---GRSFMANVREESKRVELEHLRDQI 263 (524)
Q Consensus 188 ~~vGR~~el~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~l~~~l 263 (524)
.++||+.+++.|...+..-. ....++.+.|.+|||||+|++++.+.+.+.+. ...|-. ......-..+....+.+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q-~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQ-FERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhccc-ccCCCchHHHHHHHHHH
Confidence 37999999999999998733 34779999999999999999999997655521 111111 00011111222333333
Q ss_pred HHHH-------------------hCCCCc---c-------c-----------CCch--------HHHHHHh-ccCCeEEE
Q 044627 264 LSQI-------------------LGENII---K-------T-----------SIPP--------RYINKRL-QQMKVCII 294 (524)
Q Consensus 264 l~~l-------------------~~~~~~---~-------~-----------~~~~--------~~l~~~L-~~~~~LlV 294 (524)
..++ +..... . . .... ..+.... +.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 3333 111110 0 0 0000 1111122 34599999
Q ss_pred ecCC-C-Chhh---HHHHhCCCC--CC-CCCcEEEEecCCh--hhhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 044627 295 LDNV-D-KFGH---SEYLTGGLS--RF-GHGSRVIVTTRDK--KVLDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCP 364 (524)
Q Consensus 295 lDdv-~-~~~~---~~~l~~~~~--~~-~~gs~IIiTTR~~--~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 364 (524)
+||+ | |+.. ++.+..... .+ .+....+.|.+.. .+.......+.+.|.||+..+...+...........+
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~ 239 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLP 239 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccccc
Confidence 9999 4 3333 333333322 00 0111122233322 2222223447899999999999999887764433333
Q ss_pred ccHHHHHHHHHHHhcCChHHHHHHHHHhcCC-------CHHHHHHHHhcCCCCCC-ccHHHHHHHhHhcCChHHHHHHhh
Q 044627 365 GDLLVLSDNVVDYANGSSLALNVLRSSFYRK-------SKQHWENALHNPKQISD-PDIHDMLKISYDELNYKEKDLFLD 436 (524)
Q Consensus 365 ~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~-------~~~~w~~~l~~l~~~~~-~~i~~~l~~s~~~L~~~~k~~~~~ 436 (524)
.+....|+++..|+|+.+..+-..+... +...|..-..++..... +.+-+.+..-.+.||...|.++..
T Consensus 240 ---~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~ 316 (849)
T COG3899 240 ---APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKA 316 (849)
T ss_pred ---chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4567899999999999999998888653 23334443333333221 335556888999999999999999
Q ss_pred cccccCCCCHHHHHHHHhhc--cchhHhHHHHhhCCceEE-----e---CCeE---EccHHHHHHHHHHHhhhCCCCCCC
Q 044627 437 IACFFNGEGRDYVKIILNNR--YLVHYGLNILAGKALITI-----S---NNKL---QMRDLLQEMGQRVVCHESYKDPGK 503 (524)
Q Consensus 437 la~f~~~~~~~~l~~l~~~~--~~~~~~l~~L~~~sLi~~-----~---~~~~---~mH~lv~~~~~~i~~~e~~~~~~~ 503 (524)
.||+.+.++.+.|..++... ..+...++.|....++.. . .... ..|+++|+.+-....++ +
T Consensus 317 AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~------~ 390 (849)
T COG3899 317 AACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES------Q 390 (849)
T ss_pred HHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh------h
Confidence 99999999999999999854 444445555555555531 1 1112 57888888886554443 2
Q ss_pred ccccccCcchHHHHhhhCCC
Q 044627 504 YSSCLWYHEDVYHVRKKNKV 523 (524)
Q Consensus 504 r~r~lw~~~~~~~~l~~~~~ 523 (524)
|+. .|..|..+|.++.+
T Consensus 391 rq~---~H~~i~~lL~~~~~ 407 (849)
T COG3899 391 RQY---LHLRIGQLLEQNIP 407 (849)
T ss_pred HHH---HHHHHHHHHHHhCC
Confidence 333 68888888887653
No 16
>PF05729 NACHT: NACHT domain
Probab=99.18 E-value=1.9e-10 Score=103.50 Aligned_cols=142 Identities=18% Similarity=0.240 Sum_probs=85.6
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccc------cceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHH
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQF------EGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINK 284 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~ 284 (524)
|++.|+|.+|+||||+++.++.++.... ...+|+. .+..........+...+..+........ ...+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPESIAPI----EELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccchhhh----HHHHHH
Confidence 5789999999999999999998765543 2333443 3322222222344444444433222111 112222
Q ss_pred H-hccCCeEEEecCCCChhh---------HHH-HhCCCCC-CCCCcEEEEecCChhh---hhhcCCCeEEEcCCCCHHHH
Q 044627 285 R-LQQMKVCIILDNVDKFGH---------SEY-LTGGLSR-FGHGSRVIVTTRDKKV---LDKYGVDYVYKVEGFNYRES 349 (524)
Q Consensus 285 ~-L~~~~~LlVlDdv~~~~~---------~~~-l~~~~~~-~~~gs~IIiTTR~~~~---~~~~~~~~~~~l~~L~~~ea 349 (524)
. ...++++||||++++... +.. +...+.. ..+++++|||||.... .........+.|++|+.++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 2 246799999999975433 111 2111221 2468999999998655 22333445799999999999
Q ss_pred HHHHHHhh
Q 044627 350 LEIFCYYA 357 (524)
Q Consensus 350 ~~L~~~~~ 357 (524)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99987753
No 17
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.17 E-value=1.3e-09 Score=106.58 Aligned_cols=177 Identities=12% Similarity=0.086 Sum_probs=107.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc-cCCchHHHHHH---
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK-TSIPPRYINKR--- 285 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-~~~~~~~l~~~--- 285 (524)
...+.|+|++|+|||||++.+++.+...-...+|+. ....+..++...+...++...... .......+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999988653211223333 123355677777877765443211 11112223222
Q ss_pred --hccCCeEEEecCCCChh--hHHHHh---CCCCCCCCCcEEEEecCChhhhhhc----------CCCeEEEcCCCCHHH
Q 044627 286 --LQQMKVCIILDNVDKFG--HSEYLT---GGLSRFGHGSRVIVTTRDKKVLDKY----------GVDYVYKVEGFNYRE 348 (524)
Q Consensus 286 --L~~~~~LlVlDdv~~~~--~~~~l~---~~~~~~~~gs~IIiTTR~~~~~~~~----------~~~~~~~l~~L~~~e 348 (524)
..+++.+||+||++... .++.+. ...........|++|.... ..... .....+.+++|+.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 25678999999997643 344432 2211112233455555432 11111 123467899999999
Q ss_pred HHHHHHHhhhcCCC--CCccHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044627 349 SLEIFCYYAFRQNH--CPGDLLVLSDNVVDYANGSSLALNVLRSSF 392 (524)
Q Consensus 349 a~~L~~~~~~~~~~--~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 392 (524)
..+++......... ...-..+..+.|++.++|+|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99998866543221 111235788999999999999999988775
No 18
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.13 E-value=3.7e-11 Score=118.48 Aligned_cols=279 Identities=15% Similarity=0.174 Sum_probs=184.9
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQ 288 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~ 288 (524)
..+.+.++|.|||||||++.++.. +...|....|+.+...++++.-+.- .+...++-.... .+.....+.....+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~---~~ag~~gl~~~~-g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFP---TLAGALGLHVQP-GDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHH---HHHhhccccccc-chHHHHHHHHHHhh
Confidence 367899999999999999999999 8888988887776655544332222 222222222110 12344466777889
Q ss_pred CCeEEEecCCCChhh-HHHHhCCCCCCCCCcEEEEecCChhhhhhcCCCeEEEcCCCCHH-HHHHHHHHhhhcCC---CC
Q 044627 289 MKVCIILDNVDKFGH-SEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGVDYVYKVEGFNYR-ESLEIFCYYAFRQN---HC 363 (524)
Q Consensus 289 ~~~LlVlDdv~~~~~-~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l~~L~~~-ea~~L~~~~~~~~~---~~ 363 (524)
++.++|+||...... ...+...+....+.-.|+.|+|+.... .....+.+++|+.. ++.++|...+.... ..
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 999999999965432 112222222223455689999976432 23456788888865 79999887764322 12
Q ss_pred CccHHHHHHHHHHHhcCChHHHHHHHHHhcCCCHHHHHHHHhc----CCCC------CCccHHHHHHHhHhcCChHHHHH
Q 044627 364 PGDLLVLSDNVVDYANGSSLALNVLRSSFYRKSKQHWENALHN----PKQI------SDPDIHDMLKISYDELNYKEKDL 433 (524)
Q Consensus 364 ~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~s~~~L~~~~k~~ 433 (524)
.........+|++...|.||+|..+++..+.....+....+.. +... ........+..||.-|+.-++-.
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 2334567889999999999999999999988765554444332 2221 12456778999999999999999
Q ss_pred HhhcccccCCCCHHHHHHHHhh-----c-cchhHhHHHHhhCCceEEe----CCeEEccHHHHHHHHHHHhh
Q 044627 434 FLDIACFFNGEGRDYVKIILNN-----R-YLVHYGLNILAGKALITIS----NNKLQMRDLLQEMGQRVVCH 495 (524)
Q Consensus 434 ~~~la~f~~~~~~~~l~~l~~~-----~-~~~~~~l~~L~~~sLi~~~----~~~~~mH~lv~~~~~~i~~~ 495 (524)
|-.++.|...|..+........ . +.....+..|+++|++... .-+|+.-+-.+.++.+.+.+
T Consensus 245 ~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 245 FGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred hcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888877633322222 2 3455678899999999865 22366666666666555543
No 19
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.02 E-value=3.8e-09 Score=103.78 Aligned_cols=170 Identities=16% Similarity=0.236 Sum_probs=105.1
Q ss_pred CCCCccchhhhHH---hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHH
Q 044627 185 NSEDLVGVDSHIQ---RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRD 261 (524)
Q Consensus 185 ~~~~~vGR~~el~---~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~ 261 (524)
.-+.+||-+.-+. -|.+.+.. ..+....+||++|+||||||+.++......|...-=+. .+..++..
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--------~gvkdlr~ 91 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVEA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--------SGVKDLRE 91 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHhc--CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--------ccHHHHHH
Confidence 3345666555442 23344433 34667779999999999999999998777664222111 23333322
Q ss_pred HHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCC--ChhhHHHHhCCCCCCCCCcEEEE--ecCChhhhhh---cC
Q 044627 262 QILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVD--KFGHSEYLTGGLSRFGHGSRVIV--TTRDKKVLDK---YG 334 (524)
Q Consensus 262 ~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IIi--TTR~~~~~~~---~~ 334 (524)
-+-. .-.....+++.+|++|.|. +..|-+.|++... +|.-|+| ||.|+...-. ..
T Consensus 92 i~e~---------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 92 IIEE---------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred HHHH---------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhh
Confidence 2111 1122335789999999994 5566777887765 6766666 6777643111 12
Q ss_pred CCeEEEcCCCCHHHHHHHHHHhhhcCCC-----CCccHHHHHHHHHHHhcCCh
Q 044627 335 VDYVYKVEGFNYRESLEIFCYYAFRQNH-----CPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 335 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~-----~~~~~~~~~~~i~~~~~g~P 382 (524)
-..++.+++|+.++-.+++.+-+..... ...-.++..+.++..++|--
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 3578999999999999999883322111 11122456677888887754
No 20
>PRK06893 DNA replication initiation factor; Validated
Probab=98.93 E-value=2.7e-08 Score=94.68 Aligned_cols=152 Identities=10% Similarity=0.140 Sum_probs=93.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccC
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQM 289 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~ 289 (524)
.+.+.|+|++|+|||+|+.++++.+..+...+.|+. ... ....... +.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~----~~~---~~~~~~~-------------------~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP----LSK---SQYFSPA-------------------VLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee----HHH---hhhhhHH-------------------HHhhcc-c
Confidence 457889999999999999999998766666677776 210 0000011 111122 2
Q ss_pred CeEEEecCCCCh---hhHH-HHhCCCCCC-CCCcEEE-EecCC---------hhhhhhcCCCeEEEcCCCCHHHHHHHHH
Q 044627 290 KVCIILDNVDKF---GHSE-YLTGGLSRF-GHGSRVI-VTTRD---------KKVLDKYGVDYVYKVEGFNYRESLEIFC 354 (524)
Q Consensus 290 ~~LlVlDdv~~~---~~~~-~l~~~~~~~-~~gs~II-iTTR~---------~~~~~~~~~~~~~~l~~L~~~ea~~L~~ 354 (524)
.-+|||||++.. ..++ .+...++.. ..|..+| +|+.. +.+...++....+++++++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 348999999753 2222 222212111 1355554 45543 2344444455688999999999999999
Q ss_pred HhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHH
Q 044627 355 YYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRS 390 (524)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 390 (524)
+.+....- .-.++...-|++.+.|..-.+..+-.
T Consensus 172 ~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 172 RNAYQRGI--ELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 88864432 12256778888888887766654433
No 21
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.91 E-value=7.2e-08 Score=100.06 Aligned_cols=179 Identities=14% Similarity=0.221 Sum_probs=108.5
Q ss_pred CCCCCccchhhhHHh---hhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHH
Q 044627 184 GNSEDLVGVDSHIQR---INSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLR 260 (524)
Q Consensus 184 ~~~~~~vGR~~el~~---l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 260 (524)
...+.+||.+..+.. +..++..+ ....+.|+|++|+||||||+.+++.....|. .+. .. ..+... .
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~----a~-~~~~~~-i 77 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALS----AV-TSGVKD-L 77 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEe----cc-cccHHH-H
Confidence 445679999988777 77777643 3557889999999999999999997755432 111 00 111111 1
Q ss_pred HHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEE--ecCChhhh---hhc
Q 044627 261 DQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIV--TTRDKKVL---DKY 333 (524)
Q Consensus 261 ~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIi--TTR~~~~~---~~~ 333 (524)
+.++.... .....+++.+|++|+++.. .+.+.++..+. .+..++| ||.++... ...
T Consensus 78 r~ii~~~~--------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 78 REVIEEAR--------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred HHHHHHHH--------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHh
Confidence 12221110 0111357789999999754 34556665544 3444444 34443211 111
Q ss_pred CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCC-ccHHHHHHHHHHHhcCChHHHHHHHH
Q 044627 334 GVDYVYKVEGFNYRESLEIFCYYAFRQNHCP-GDLLVLSDNVVDYANGSSLALNVLRS 390 (524)
Q Consensus 334 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~~~ 390 (524)
.....+.+.+++.++..+++.+......... .-..+....+++.++|.|..+..+..
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2236789999999999999987653211111 22356678899999999977654433
No 22
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.90 E-value=5.5e-08 Score=104.66 Aligned_cols=281 Identities=11% Similarity=0.028 Sum_probs=150.2
Q ss_pred CCCCCCccchhhhHHhhhhhhhc---CCCCceEEEeeccccchHHHHHHHHHhhhccc-----cc--ceeEeeeeccccc
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCI---GLPDFRMVRPWDMHGIAKTDIARAILNQISSQ-----FE--GRSFMANVREESK 252 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-----f~--~~~wv~~~~~~~~ 252 (524)
...|+.+.|||.|+++|...|.. ++....++.|+|++|.|||++++.+.+++... .+ .++++. ...
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN----Cm~ 826 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN----GMN 826 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe----CCc
Confidence 44567899999999999998875 23334567899999999999999999876432 22 134444 223
Q ss_pred ccCHHHHHHHHHHHHhCCCCcc---cCCchHHHHHHhcc---CCeEEEecCCCChh--hHHHHhCCCCCC-CCCcEEEE-
Q 044627 253 RVELEHLRDQILSQILGENIIK---TSIPPRYINKRLQQ---MKVCIILDNVDKFG--HSEYLTGGLSRF-GHGSRVIV- 322 (524)
Q Consensus 253 ~~~~~~l~~~ll~~l~~~~~~~---~~~~~~~l~~~L~~---~~~LlVlDdv~~~~--~~~~l~~~~~~~-~~gs~IIi- 322 (524)
-.....++..|..++.+..+.. .......+...+.. ...+||||+++... .-+.|...+.+. ..+++|++
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLI 906 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLI 906 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEE
Confidence 3456677777777775444321 11222333333321 24589999997443 111222111111 13445443
Q ss_pred -ecCCh--------hhhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCC-CCC-ccHHHHHHHHHHHhcCChHHHHHHHHH
Q 044627 323 -TTRDK--------KVLDKYGVDYVYKVEGFNYRESLEIFCYYAFRQN-HCP-GDLLVLSDNVVDYANGSSLALNVLRSS 391 (524)
Q Consensus 323 -TTR~~--------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~-~~~~~~~~~i~~~~~g~PLal~~~~~~ 391 (524)
+|.+. .+...++ ...+..+|++.++-.+++..++.... ... ...+-+|+.++...|..-.||.++-..
T Consensus 907 GISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrA 985 (1164)
T PTZ00112 907 AISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKA 985 (1164)
T ss_pred EecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 33321 1111122 22466799999999999998875321 112 122223333333445566777666544
Q ss_pred hcCC-----CHHHHHHHHhcCCCCCCccHHHHHHHhHhcCChHHHHHHhhcccccC-----CCCHHHHHHH----Hh---
Q 044627 392 FYRK-----SKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFFN-----GEGRDYVKII----LN--- 454 (524)
Q Consensus 392 l~~~-----~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~-----~~~~~~l~~l----~~--- 454 (524)
.... ..+.-..+..++. ...+.-....||.+.|-+|..+..... .++...+... ..
T Consensus 986 gEikegskVT~eHVrkAleeiE-------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~G 1058 (1164)
T PTZ00112 986 FENKRGQKIVPRDITEATNQLF-------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSG 1058 (1164)
T ss_pred HhhcCCCccCHHHHHHHHHHHH-------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhh
Confidence 4211 2223333332221 112344456788888877764443221 1333332221 11
Q ss_pred ----hc-c--chhHhHHHHhhCCceEEe
Q 044627 455 ----NR-Y--LVHYGLNILAGKALITIS 475 (524)
Q Consensus 455 ----~~-~--~~~~~l~~L~~~sLi~~~ 475 (524)
.+ . ...+.|.+|...|+|-++
T Consensus 1059 k~iGv~plTqRV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1059 KYIGMCSNNELFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred hhcCCCCcHHHHHHHHHHHHhcCeEEec
Confidence 11 1 133457888888888865
No 23
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.83 E-value=8.5e-08 Score=91.17 Aligned_cols=175 Identities=15% Similarity=0.188 Sum_probs=103.6
Q ss_pred CCCccc--hhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHH
Q 044627 186 SEDLVG--VDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQI 263 (524)
Q Consensus 186 ~~~~vG--R~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 263 (524)
.++|++ .+..++.+.+++.. ...+.+.|+|.+|+|||+||+.+++.........+++. ... +..-...+
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~----~~~---~~~~~~~~ 84 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP----LAE---LAQADPEV 84 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe----HHH---HHHhHHHH
Confidence 345653 44567777777643 34568889999999999999999987654444455555 111 00000111
Q ss_pred HHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChhh----HHHHhCCCCC-CCCCcEEEEecCChh---------h
Q 044627 264 LSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFGH----SEYLTGGLSR-FGHGSRVIVTTRDKK---------V 329 (524)
Q Consensus 264 l~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~IIiTTR~~~---------~ 329 (524)
+ ..+.+ .-+|||||++.... .+.+...+.. ...+..+|+||+... +
T Consensus 85 ~-------------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L 144 (226)
T TIGR03420 85 L-------------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDL 144 (226)
T ss_pred H-------------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHH
Confidence 1 11222 23899999964321 2233222111 113457888887432 1
Q ss_pred hhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHHH
Q 044627 330 LDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSS 391 (524)
Q Consensus 330 ~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 391 (524)
.........+++++++.++...++...+..... .-..+....+.+.+.|+|..+..+-..
T Consensus 145 ~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 112222457899999999999998875532221 122456788888899999888766543
No 24
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83 E-value=2e-07 Score=99.89 Aligned_cols=184 Identities=13% Similarity=0.077 Sum_probs=112.8
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc---------------------ccce
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ---------------------FEGR 241 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~ 241 (524)
|...+++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+... |..+
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 3445679999999999999997542 35567799999999999999999976421 1111
Q ss_pred eEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh--hHHHHhCCCCCCCCCcE
Q 044627 242 SFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG--HSEYLTGGLSRFGHGSR 319 (524)
Q Consensus 242 ~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ 319 (524)
+.++ .+...++..+ +.++..... .-..++.-++|||+++... .+..|+..+.......+
T Consensus 91 iEID----Aas~rgVDdI-ReLIe~a~~--------------~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 91 VEMD----AASNRGVDEM-AALLERAVY--------------APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred EEec----ccccccHHHH-HHHHHHHHh--------------ccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 1111 0111111111 111111000 0012345588999997554 36666666554456778
Q ss_pred EEEecCChhhh-hh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh-HHHHHH
Q 044627 320 VIVTTRDKKVL-DK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS-LALNVL 388 (524)
Q Consensus 320 IIiTTR~~~~~-~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~ 388 (524)
+|+||.+.... .. ..-...+++..++.++..+.+.+.+...+. .-..+.+..|++.++|.. -+|.++
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 88777765332 11 123467999999999999999887643321 123566788899998854 466554
No 25
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.82 E-value=1.5e-08 Score=100.28 Aligned_cols=144 Identities=22% Similarity=0.394 Sum_probs=101.2
Q ss_pred CCCcccEEecCcccccCCchHHHHHHHHHhCCCceEecC-CcCCCCcchHHHHHhhhhcceEEEEeecCccC--------
Q 044627 9 SPRKYDVFLSFRGEDTRNNFTSHLFAAFCREKIKAFIDE-QLKKGDDISSALLNAIEESKISVIIFSKGYAS-------- 79 (524)
Q Consensus 9 ~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~-------- 79 (524)
...+.|||||||+. +....++-|.-.|+-+|++||+|- .+..|+ +.+.+.+.|..++.+|+|+|||.+.
T Consensus 609 ~skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 35679999999876 445699999999999999999997 677775 6688999999999999999999754
Q ss_pred chhhHHHHHHHHHhHhhcCCeeEeeEeEeccCcccccCCchHhHHhhhhhhcCCChHHHHHHHHHHHhcccccccCcccc
Q 044627 80 STWCLEELVKILECKKRKGQTVIPVFYNVDPSDVRNQTGSFGDAFVEHENDFRDMPQKVHKWRAALTQASNLCGWDSMTI 159 (524)
Q Consensus 80 s~wc~~El~~~~~~~~~~~~~v~Pi~~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~ 159 (524)
-.|...|+..++.|+ ..|+|||-. .|+ |...++.... .+.-+....|.... .
T Consensus 687 eDWVHKEl~~Afe~~----KNIiPI~D~-----------aFE--~Pt~ed~iPn----------Dirmi~kyNGvKWv-H 738 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQ----KNIIPIFDT-----------AFE--FPTKEDQIPN----------DIRMITKYNGVKWV-H 738 (832)
T ss_pred HHHHHHHHHHHHHhc----CCeeeeecc-----------ccc--CCCchhcCcH----------HHHHHHhccCeeee-h
Confidence 247778888888777 479999822 010 0000111111 11223344554444 5
Q ss_pred cchhhhHHHHHhhcccccccccc
Q 044627 160 RHEAELVDEIVKDILKKIHDISH 182 (524)
Q Consensus 160 ~~e~~~i~~i~~~v~~~l~~~~~ 182 (524)
.++...+.++++-+...+++++|
T Consensus 739 dYQdA~maKvvRFitGe~nRttp 761 (832)
T KOG3678|consen 739 DYQDACMAKVVRFITGELNRTTP 761 (832)
T ss_pred hhHHHHHHHHHHHHhccccCCCC
Confidence 56777888888888877776343
No 26
>PTZ00202 tuzin; Provisional
Probab=98.81 E-value=6.4e-07 Score=89.96 Aligned_cols=202 Identities=12% Similarity=0.087 Sum_probs=116.6
Q ss_pred HHHhcccccccCcccccchh-h-hHHHHHhhccccccc-----cccCCCCCCccchhhhHHhhhhhhhcCC-CCceEEEe
Q 044627 144 ALTQASNLCGWDSMTIRHEA-E-LVDEIVKDILKKIHD-----ISHFGNSEDLVGVDSHIQRINSLLCIGL-PDFRMVRP 215 (524)
Q Consensus 144 al~~~~~~~g~~~~~~~~e~-~-~i~~i~~~v~~~l~~-----~~~~~~~~~~vGR~~el~~l~~~L~~~~-~~~~~v~I 215 (524)
|+--++...||.+++...+. . -+.-.++...+.+++ ...|.....|+||+.++.+|...|...+ ...+++.|
T Consensus 212 a~lgv~~vF~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvL 291 (550)
T PTZ00202 212 ALLGVASVFGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVF 291 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEE
Confidence 44445555666665433222 1 122233344444333 1346678899999999999999997533 33568999
Q ss_pred eccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHh-----c-cC
Q 044627 216 WDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRL-----Q-QM 289 (524)
Q Consensus 216 ~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L-----~-~~ 289 (524)
+|++|+|||||++.+..... + ..++.|. .+..+++..++..++.+......++...|.+.+ . ++
T Consensus 292 tG~~G~GKTTLlR~~~~~l~--~--~qL~vNp------rg~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~Gr 361 (550)
T PTZ00202 292 TGFRGCGKSSLCRSAVRKEG--M--PAVFVDV------RGTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGE 361 (550)
T ss_pred ECCCCCCHHHHHHHHHhcCC--c--eEEEECC------CCHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999997654 2 2444422 266899999999999743322223334444333 2 55
Q ss_pred CeEEEecCC--CChhhHHHHhCCCCCCCCCcEEEEecCChhhhhh---cCCCeEEEcCCCCHHHHHHHHHH
Q 044627 290 KVCIILDNV--DKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDK---YGVDYVYKVEGFNYRESLEIFCY 355 (524)
Q Consensus 290 ~~LlVlDdv--~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~ 355 (524)
+.+||+-=- .+..-+..-.-.+-+-..-|+|++----+.+... ..--..|-+++++.++|.+.-..
T Consensus 362 tPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 362 TPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred CEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 666665422 2222211101111112246777774433222111 01125689999999999876544
No 27
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=9.4e-07 Score=89.49 Aligned_cols=193 Identities=12% Similarity=0.024 Sum_probs=112.3
Q ss_pred cCCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccc--cce-eEe--eeecccccccCH
Q 044627 182 HFGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQF--EGR-SFM--ANVREESKRVEL 256 (524)
Q Consensus 182 ~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f--~~~-~wv--~~~~~~~~~~~~ 256 (524)
.|.....++|.+...+.|.+.+..+. -...+.++|+.|+||+|+|..+++.+-.+- ... +-. ..+. .+. .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~---~ 88 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDP---D 88 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCC---C
Confidence 34556789999999999999887642 355788999999999999999999753221 000 000 0000 000 0
Q ss_pred HHHHHHHHHHHhCCCCcc---------------cCCchHHHHH---Hhc-----cCCeEEEecCCCC--hhhHHHHhCCC
Q 044627 257 EHLRDQILSQILGENIIK---------------TSIPPRYINK---RLQ-----QMKVCIILDNVDK--FGHSEYLTGGL 311 (524)
Q Consensus 257 ~~l~~~ll~~l~~~~~~~---------------~~~~~~~l~~---~L~-----~~~~LlVlDdv~~--~~~~~~l~~~~ 311 (524)
....+.+... ..++. ..-.++.+++ .+. +.+-++|+|+++. ......|+..+
T Consensus 89 c~~c~~i~~~---~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~L 165 (365)
T PRK07471 89 HPVARRIAAG---AHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVL 165 (365)
T ss_pred ChHHHHHHcc---CCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHH
Confidence 0111111100 00000 0011233333 222 3567899999964 44455666555
Q ss_pred CCCCCCcEEEEecCChh-hhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHH
Q 044627 312 SRFGHGSRVIVTTRDKK-VLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVL 388 (524)
Q Consensus 312 ~~~~~gs~IIiTTR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 388 (524)
....+++.+|++|.+.. +... ......+.+.+++.++..+++...... .. .+....++..++|.|+....+
T Consensus 166 Eepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 166 EEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred hcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 54445666777776653 3222 223568999999999999999876411 11 122367899999999865443
No 28
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=4.6e-07 Score=92.35 Aligned_cols=180 Identities=17% Similarity=0.148 Sum_probs=109.9
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccccc---------------------ce
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFE---------------------GR 241 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~ 241 (524)
|...+.++|-+..++.+.+.+..+. -...+.++|++|+||||+|+.+++.+..... ..
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 3445679999999999999887542 3567789999999999999999997642210 11
Q ss_pred eEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh--hHHHHhCCCCCCCCCcE
Q 044627 242 SFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG--HSEYLTGGLSRFGHGSR 319 (524)
Q Consensus 242 ~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ 319 (524)
.++. .+....... .+.+...+... -..+++-++|+|+++... ..+.++..+....+..+
T Consensus 91 ~~~~----~~~~~~v~~-ir~i~~~~~~~--------------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 91 IEID----AASRTKVEE-MREILDNIYYS--------------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred EEec----ccccCCHHH-HHHHHHHHhcC--------------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 1111 000011111 11111111000 012345699999997654 35666666655455666
Q ss_pred EEEecCCh-hhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHH
Q 044627 320 VIVTTRDK-KVLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (524)
Q Consensus 320 IIiTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 384 (524)
+|++|.+. .+... .+....+++.+++.++..+.+...+...+. .-..+.+..|++.++|.|-.
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 77766543 33222 123467899999999999888876543321 12245678899999998854
No 29
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=8.3e-07 Score=93.60 Aligned_cols=187 Identities=12% Similarity=0.017 Sum_probs=111.7
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc--cccceeEeeeecc-c--ccccCHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS--QFEGRSFMANVRE-E--SKRVELEH 258 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~wv~~~~~-~--~~~~~~~~ 258 (524)
..-+.++|-+...+.|..++..+. -...+.++|++|+||||+|+.+++.+.. .+...||.+.... . ....++..
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e 89 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE 89 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE
Confidence 344678999999999998887643 3456789999999999999999997642 2233444431000 0 00000000
Q ss_pred HHHHHHHHHhCCCCcccCCchHH---HHHHh-----ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCC-h
Q 044627 259 LRDQILSQILGENIIKTSIPPRY---INKRL-----QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRD-K 327 (524)
Q Consensus 259 l~~~ll~~l~~~~~~~~~~~~~~---l~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~-~ 327 (524)
+... ....... +.+.+ .+++-++|+|+++.. ..++.|+..+....+.+.+|++|.. .
T Consensus 90 --------l~~~----~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~ 157 (504)
T PRK14963 90 --------IDAA----SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPE 157 (504)
T ss_pred --------eccc----ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChh
Confidence 0000 0011111 11211 235668999999744 3466666666544455555555543 3
Q ss_pred hhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHH
Q 044627 328 KVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (524)
Q Consensus 328 ~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 385 (524)
.+.... .....+++.+++.++..+.+.+.+...+.. -..+.+..|++.++|.+--+
T Consensus 158 kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred hCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 332222 234679999999999999998876443321 12456788999999988544
No 30
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=7.2e-06 Score=82.98 Aligned_cols=280 Identities=16% Similarity=0.153 Sum_probs=168.2
Q ss_pred cCCCCCCccchhhhHHhhhhhhhc--CCCCceEEEeeccccchHHHHHHHHHhhhcccccc--eeEeeeecccccccCHH
Q 044627 182 HFGNSEDLVGVDSHIQRINSLLCI--GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEG--RSFMANVREESKRVELE 257 (524)
Q Consensus 182 ~~~~~~~~vGR~~el~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~ 257 (524)
+...|+.+.+|+.+++++...|.. ....+.-+.|+|.+|.|||++++.+++++...... ++++. .....+..
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~ 87 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPY 87 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHH
Confidence 344556699999999999988865 12223348899999999999999999988766443 46666 45567888
Q ss_pred HHHHHHHHHHhCCCC-cc-cCCchHHHHHHhcc--CCeEEEecCCCChh-----hHHHHhCCCCCCCCCcE--EEEecCC
Q 044627 258 HLRDQILSQILGENI-IK-TSIPPRYINKRLQQ--MKVCIILDNVDKFG-----HSEYLTGGLSRFGHGSR--VIVTTRD 326 (524)
Q Consensus 258 ~l~~~ll~~l~~~~~-~~-~~~~~~~l~~~L~~--~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~--IIiTTR~ 326 (524)
.++..++..++..+. .. ..+..+.+.+.+.. +.+++|||+++... .+-.|....... .++ +|..+-+
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~ 165 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSND 165 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEecc
Confidence 888999998863333 11 44445556666644 68899999996432 233444332222 333 3334444
Q ss_pred hhhhh--------hcCCCeEEEcCCCCHHHHHHHHHHhh---hcCCCCCccHHHHHHHHHHHhc-CChHHHHHHHHH--h
Q 044627 327 KKVLD--------KYGVDYVYKVEGFNYRESLEIFCYYA---FRQNHCPGDLLVLSDNVVDYAN-GSSLALNVLRSS--F 392 (524)
Q Consensus 327 ~~~~~--------~~~~~~~~~l~~L~~~ea~~L~~~~~---~~~~~~~~~~~~~~~~i~~~~~-g~PLal~~~~~~--l 392 (524)
..... .++. ..+..+|-+.+|-.+++..++ |.......+.-+++..++...+ .--.||.++... +
T Consensus 166 ~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~ei 244 (366)
T COG1474 166 DKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEI 244 (366)
T ss_pred HHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 33222 2222 337788999999999998765 3344444455555555555555 445566555332 2
Q ss_pred cCC------CHHHHHHHHhcCCCCCCccHHHHHHHhHhcCChHHHHHHhhcccccCCCCHHHHHHHHhh-c----c---c
Q 044627 393 YRK------SKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFFNGEGRDYVKIILNN-R----Y---L 458 (524)
Q Consensus 393 ~~~------~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~~~~~~~l~~l~~~-~----~---~ 458 (524)
..+ +.+.-..+.... -.....-....|+.+.|-.+..++....++....+...... + . .
T Consensus 245 Ae~~~~~~v~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~ 317 (366)
T COG1474 245 AEREGSRKVSEDHVREAQEEI-------ERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRR 317 (366)
T ss_pred HHhhCCCCcCHHHHHHHHHHh-------hHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHH
Confidence 211 122222221111 12234445788998888777665554344555554443332 1 2 2
Q ss_pred hhHhHHHHhhCCceEEe
Q 044627 459 VHYGLNILAGKALITIS 475 (524)
Q Consensus 459 ~~~~l~~L~~~sLi~~~ 475 (524)
..+.+++|...|+|...
T Consensus 318 ~~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 318 FSDIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHHHhcCeEEee
Confidence 33568899999999866
No 31
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=4.1e-07 Score=99.34 Aligned_cols=187 Identities=14% Similarity=0.098 Sum_probs=113.5
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc-c-c-ceeEeeee------------c
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ-F-E-GRSFMANV------------R 248 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f-~-~~~wv~~~------------~ 248 (524)
.....+||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+... . . .-|..+.. -
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 445679999999999999987542 24566899999999999999999976542 1 0 01111100 0
Q ss_pred c--cccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCC--hhhHHHHhCCCCCCCCCcEEEEec
Q 044627 249 E--ESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDK--FGHSEYLTGGLSRFGHGSRVIVTT 324 (524)
Q Consensus 249 ~--~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiTT 324 (524)
+ ......+.. .+.+...+. ..-..+++-++|||+++. .+..+.|+..+......+++|++|
T Consensus 92 EidAas~~kVDd-IReLie~v~--------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT 156 (944)
T PRK14949 92 EVDAASRTKVDD-TRELLDNVQ--------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT 156 (944)
T ss_pred EeccccccCHHH-HHHHHHHHH--------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC
Confidence 0 000011111 122221110 011235677999999964 455677777666545566666655
Q ss_pred CC-hhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH-HHHHH
Q 044627 325 RD-KKVLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVL 388 (524)
Q Consensus 325 R~-~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 388 (524)
.+ ..+... ......|++.+|+.++..+.+...+-... ..-..+.+..|++.++|.|- |+.++
T Consensus 157 Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 157 TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44 444322 22346899999999999998887653322 11234567889999999885 44443
No 32
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=4.6e-07 Score=96.15 Aligned_cols=179 Identities=15% Similarity=0.092 Sum_probs=110.2
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccc---------------------ccee
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQF---------------------EGRS 242 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~ 242 (524)
.....+||.+...+.|.+++..+. -...+.++|+.|+||||+|+.+++.+.... ..++
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 445679999999999999997543 356888999999999999999999764321 1111
Q ss_pred EeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEE
Q 044627 243 FMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRV 320 (524)
Q Consensus 243 wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~I 320 (524)
.++ .+...+...+ +.++..+. ..-..++.-++|+|+++.. .....|+..+....++..+
T Consensus 91 EID----AAs~~~VddI-Reli~~~~--------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 91 EID----AASRTKVEDT-RELLDNVP--------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred Eec----ccccCCHHHH-HHHHHHHh--------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 111 1111111111 11111110 0011245668999999754 4566666655544456677
Q ss_pred EEecCChh-hhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHH
Q 044627 321 IVTTRDKK-VLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (524)
Q Consensus 321 IiTTR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 384 (524)
|++|.+.. +... ......+++.+++.++..+.+.+.+...+. .-..+.+..|++.++|.+-.
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRD 215 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 77776542 2211 123467899999999999988876644321 12245678899999987643
No 33
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=3.9e-07 Score=96.42 Aligned_cols=195 Identities=11% Similarity=0.040 Sum_probs=112.0
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccccc-ceeEeeeecccccccCHHHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFE-GRSFMANVREESKRVELEHLRD 261 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~l~~ 261 (524)
|...+++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+...-. ..--+. +...+......
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG~C~sC~ 85 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCGQCRACT 85 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCcccHHHH
Confidence 3455679999999999999997643 3557789999999999999999997643100 000000 00000000000
Q ss_pred HHHHHHhCCCCcc------cCCchHHHHHHh--------ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecC
Q 044627 262 QILSQILGENIIK------TSIPPRYINKRL--------QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTR 325 (524)
Q Consensus 262 ~ll~~l~~~~~~~------~~~~~~~l~~~L--------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR 325 (524)
.+.. +...+. ....++.+++.+ .++.-++|||+++.. ...+.|+..+.....++++|++|.
T Consensus 86 ~I~a---G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 86 EIDA---GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred HHHc---CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 0000 000000 011122222221 345668999999744 456777777665455666555554
Q ss_pred -Chhhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHH-HHHH
Q 044627 326 -DKKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA-LNVL 388 (524)
Q Consensus 326 -~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa-l~~~ 388 (524)
...+.... .-...+.+..++.++..+.+.+.+...+.. ...+.++.|++.++|.|.- +.++
T Consensus 163 ep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdALsLL 226 (700)
T PRK12323 163 DPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDALSLT 226 (700)
T ss_pred ChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44443221 124578999999999999888765432211 2245568889999998854 4443
No 34
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.68 E-value=5.4e-07 Score=91.18 Aligned_cols=196 Identities=15% Similarity=0.084 Sum_probs=107.7
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccc-c-ceeEeeeecccccccCHHHHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQF-E-GRSFMANVREESKRVELEHLRD 261 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~l~~ 261 (524)
.....++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+++.+.... . ..+.+. ....... ....+..
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~-~~~~~~~ 87 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ-GKKYLVE 87 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc-chhhhhc
Confidence 33467999999999999988753 344678999999999999999999765432 2 123333 1100000 0000000
Q ss_pred --HHHHHHhCCCCcccCCchHHHHHHh---------ccCCeEEEecCCCChh--hHHHHhCCCCCCCCCcEEEEecCChh
Q 044627 262 --QILSQILGENIIKTSIPPRYINKRL---------QQMKVCIILDNVDKFG--HSEYLTGGLSRFGHGSRVIVTTRDKK 328 (524)
Q Consensus 262 --~ll~~l~~~~~~~~~~~~~~l~~~L---------~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~~ 328 (524)
.....+... ..........+++.+ ...+-+||+||++... ....+...+....+.+++|+||.++.
T Consensus 88 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 88 DPRFAHFLGTD-KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred Ccchhhhhhhh-hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 000000000 000000112222211 1234589999996543 23333333333335677877775432
Q ss_pred -hhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHH
Q 044627 329 -VLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALN 386 (524)
Q Consensus 329 -~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 386 (524)
+.... .....+++.+++.++...++...+...+.. -..+.+..+++.++|.+-.+.
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 22211 223578899999999999988765433321 225677888999988765543
No 35
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.67 E-value=2.6e-07 Score=89.52 Aligned_cols=175 Identities=16% Similarity=0.170 Sum_probs=105.4
Q ss_pred CCCCCccchhhhHHh---hhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHH
Q 044627 184 GNSEDLVGVDSHIQR---INSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLR 260 (524)
Q Consensus 184 ~~~~~~vGR~~el~~---l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 260 (524)
..-.++||-+..+.+ |.+++.+ +..+.+.+||++|+||||||+.++..-+.+- ..|+. .+-...-..-.
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ieq--~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~dv 206 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIEQ--NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTNDV 206 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHHc--CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHHH
Confidence 344567777666543 3444433 4578888999999999999999998655442 44555 22211112222
Q ss_pred HHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCC--ChhhHHHHhCCCCCCCCCcEEEE--ecCChhhhh---hc
Q 044627 261 DQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVD--KFGHSEYLTGGLSRFGHGSRVIV--TTRDKKVLD---KY 333 (524)
Q Consensus 261 ~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IIi--TTR~~~~~~---~~ 333 (524)
+.++.+-. -...+..+|.+|.+|.|. +..|-+.|++... +|.-++| ||.|+.... ..
T Consensus 207 R~ife~aq-------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE---~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 207 RDIFEQAQ-------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVE---NGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred HHHHHHHH-------------HHHhhhcceeEEEeHHhhhhhhhhhhcccceec---cCceEEEecccCCCccchhHHHH
Confidence 22222211 122356789999999994 5556667776654 5665555 777764321 12
Q ss_pred CCCeEEEcCCCCHHHHHHHHHHhhh---cCCC---CCc-----cHHHHHHHHHHHhcCCh
Q 044627 334 GVDYVYKVEGFNYRESLEIFCYYAF---RQNH---CPG-----DLLVLSDNVVDYANGSS 382 (524)
Q Consensus 334 ~~~~~~~l~~L~~~ea~~L~~~~~~---~~~~---~~~-----~~~~~~~~i~~~~~g~P 382 (524)
....++-|++|+.++...++.+-.- .... +-+ -...+.+-++..|.|-.
T Consensus 271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred hccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 3457889999999999998887321 1111 111 22345666677777754
No 36
>PRK04195 replication factor C large subunit; Provisional
Probab=98.66 E-value=1.2e-06 Score=92.71 Aligned_cols=180 Identities=12% Similarity=0.091 Sum_probs=108.3
Q ss_pred CCCCCCccchhhhHHhhhhhhhcC--CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIG--LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLR 260 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 260 (524)
|.....++|.+..++.|..|+..- ....+.+.|+|++|+||||+|..+++.+. |+ .+-+. .+...... ..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~-~ieln----asd~r~~~-~i 81 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE-VIELN----ASDQRTAD-VI 81 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEc----ccccccHH-HH
Confidence 334567999999999999998752 12367899999999999999999999874 22 12222 22222222 22
Q ss_pred HHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh------hHHHHhCCCCCCCCCcEEEEecCChh-hhh--
Q 044627 261 DQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG------HSEYLTGGLSRFGHGSRVIVTTRDKK-VLD-- 331 (524)
Q Consensus 261 ~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~IIiTTR~~~-~~~-- 331 (524)
..++....... .....++-+||||+++... .+..+...+. ..++.||+|+.+.. ...
T Consensus 82 ~~~i~~~~~~~------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 82 ERVAGEAATSG------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHHHHhhccC------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 22222211100 0011357799999997542 2444444333 23445666664421 111
Q ss_pred hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHH
Q 044627 332 KYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALN 386 (524)
Q Consensus 332 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 386 (524)
.-.....+.+.+++.++....+...+...+.. -..+....|++.++|..-.+.
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 11234678999999999998888776443321 125678899999988765543
No 37
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.66 E-value=3.9e-07 Score=86.75 Aligned_cols=174 Identities=14% Similarity=0.195 Sum_probs=98.1
Q ss_pred CCCCcc-chhhhH-HhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHH
Q 044627 185 NSEDLV-GVDSHI-QRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQ 262 (524)
Q Consensus 185 ~~~~~v-GR~~el-~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 262 (524)
..++|+ |...+. ..+.++.. .....+.+.|+|.+|+|||+||..+++.....-....+++ ... +...
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~----~~~------~~~~ 84 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD----AAS------PLLA 84 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe----hHH------hHHH
Confidence 344555 554444 34444433 2233567889999999999999999997643323345554 111 0000
Q ss_pred HHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCC-CCCc-EEEEecCChhhhh-------
Q 044627 263 ILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRF-GHGS-RVIVTTRDKKVLD------- 331 (524)
Q Consensus 263 ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~-~~gs-~IIiTTR~~~~~~------- 331 (524)
+ .. ....-+||+||++.. ...+.+...+... ..+. .+|+|++......
T Consensus 85 ~--------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~ 143 (227)
T PRK08903 85 F--------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLR 143 (227)
T ss_pred H--------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHH
Confidence 0 00 112347899999643 2222332222111 1233 4667766432111
Q ss_pred -hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044627 332 -KYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSF 392 (524)
Q Consensus 332 -~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 392 (524)
.+.....+++++++.++-..++.+.+.... ..-.++....+++.+.|++..+..+-..+
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222236789999999887777766543222 11225677888889999999887666554
No 38
>PLN03025 replication factor C subunit; Provisional
Probab=98.66 E-value=1.4e-06 Score=87.30 Aligned_cols=182 Identities=12% Similarity=0.140 Sum_probs=106.2
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc-cccceeE-eeeecccccccCHHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS-QFEGRSF-MANVREESKRVELEHLR 260 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~w-v~~~~~~~~~~~~~~l~ 260 (524)
|..-..++|.+..++.|..++..+ ..+.+.++|++|+||||+|..+++.+.. .|...+. +. .+...+... .
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln----~sd~~~~~~-v 81 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN----ASDDRGIDV-V 81 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec----ccccccHHH-H
Confidence 344567899999999888887653 3445779999999999999999998633 3332111 11 122222222 2
Q ss_pred HHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh--hHHHHhCCCCCCCCCcEEEEecCCh-hhhhhc-CCC
Q 044627 261 DQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG--HSEYLTGGLSRFGHGSRVIVTTRDK-KVLDKY-GVD 336 (524)
Q Consensus 261 ~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~~~-~~~ 336 (524)
+.+.......... .-.++.-++|||+++... .-..+...+...++.+++|+++... .+.... ...
T Consensus 82 r~~i~~~~~~~~~-----------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 82 RNKIKMFAQKKVT-----------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHHHHhcccc-----------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 2222211110000 001345689999997543 3344444343334567777766442 222111 123
Q ss_pred eEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHH
Q 044627 337 YVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (524)
Q Consensus 337 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 384 (524)
..+++.+++.++..+.+...+-..+.. -..+.+..|++.++|..-.
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 578999999999998888776443321 1245678899999887643
No 39
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.65 E-value=1.1e-07 Score=97.01 Aligned_cols=175 Identities=21% Similarity=0.246 Sum_probs=101.5
Q ss_pred CCCCCccchhhhHHhhhhhhhcC-----------CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccccc
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIG-----------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESK 252 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~ 252 (524)
.....+.|++..+++|.+.+... -...+-+.|+|++|+|||+||+++++.....|-.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~---------- 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV---------- 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc----------
Confidence 34457899999999998877431 122556899999999999999999998765542111
Q ss_pred ccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHh-ccCCeEEEecCCCChh----------------hHHHHhCCCCCC-
Q 044627 253 RVELEHLRDQILSQILGENIIKTSIPPRYINKRL-QQMKVCIILDNVDKFG----------------HSEYLTGGLSRF- 314 (524)
Q Consensus 253 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 314 (524)
...+..... +.. ......+.+.. ...+.+|+||+++... .+..++..+...
T Consensus 189 ---~~~l~~~~~----g~~----~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 189 ---GSELVRKYI----GEG----ARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred ---hHHHHHHhh----hHH----HHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 011111100 000 00111111221 3457899999996431 122233222211
Q ss_pred -CCCcEEEEecCChhhhh-----hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh
Q 044627 315 -GHGSRVIVTTRDKKVLD-----KYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 315 -~~gs~IIiTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (524)
..+..||.||....... .......+.++..+.++..++|..+..+...... .....+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 23667888887543221 1123567899999999999999887644332211 11456777777764
No 40
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.65 E-value=5.9e-08 Score=89.00 Aligned_cols=50 Identities=26% Similarity=0.366 Sum_probs=35.5
Q ss_pred CccchhhhHHhhhhhhhc-CCCCceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 188 DLVGVDSHIQRINSLLCI-GLPDFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 188 ~~vGR~~el~~l~~~L~~-~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
.||||+.+++++.+.|.. .....+.+.|+|.+|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 389999999999999953 33457899999999999999999999987766
No 41
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=9.1e-07 Score=93.54 Aligned_cols=184 Identities=15% Similarity=0.090 Sum_probs=110.7
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc---------------------cccee
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ---------------------FEGRS 242 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~ 242 (524)
.....+||-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+... |...+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 445679999999999999887542 34567899999999999999999865431 11122
Q ss_pred EeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEE
Q 044627 243 FMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRV 320 (524)
Q Consensus 243 wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~I 320 (524)
.+. .....+...+ +.++..+.. .-..+++-++|+|+++.. ...+.|+..+......+.+
T Consensus 92 eid----aas~~gvd~i-r~ii~~~~~--------------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 92 EID----AASRTGVEET-KEILDNIQY--------------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred Eee----cccccCHHHH-HHHHHHHHh--------------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 221 1111111111 111111100 012345679999999744 4466676666654456655
Q ss_pred EE-ecCChhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh-HHHHHHH
Q 044627 321 IV-TTRDKKVLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS-LALNVLR 389 (524)
Q Consensus 321 Ii-TTR~~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~ 389 (524)
|+ ||....+... ......+++.+++.++..+.+.+.+-..+ .....+.+..|++.++|.+ .|+..+-
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 54 5443333322 22356899999999998888876543322 1223456678889999866 4554443
No 42
>PF13173 AAA_14: AAA domain
Probab=98.63 E-value=1.2e-07 Score=81.58 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=75.7
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCC
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMK 290 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~ 290 (524)
+++.|.|+.|+|||||+++++++.. .-..+++++ ...... ..... .+ ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~----~~~~~~-~~~~~-------------~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN----FDDPRD-RRLAD-------------PD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec----cCCHHH-HHHhh-------------hh-hHHHHHHhhccCC
Confidence 6889999999999999999998766 333455665 211111 00000 00 1223333334477
Q ss_pred eEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCChhhhhhc------CCCeEEEcCCCCHHHH
Q 044627 291 VCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKY------GVDYVYKVEGFNYRES 349 (524)
Q Consensus 291 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~------~~~~~~~l~~L~~~ea 349 (524)
.+|+||++.....|......+....+..+|++|+.+....... |....+++.||+..|-
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 8999999987777666555544444578999999877655331 2234679999998763
No 43
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.63 E-value=4.2e-07 Score=83.83 Aligned_cols=180 Identities=17% Similarity=0.171 Sum_probs=97.7
Q ss_pred CCCCCCccchhhhHHhhhhhhhc---CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCI---GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHL 259 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 259 (524)
|..-++|||-+..++.+.-++.. .......+.+||++|+||||||.-+++....+|. +.+. .......++..
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg-~~i~k~~dl~~- 94 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG-PAIEKAGDLAA- 94 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC-CC--SCHHHHH-
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc-hhhhhHHHHHH-
Confidence 45567899999999988766653 2234677889999999999999999999887763 2220 00111111111
Q ss_pred HHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCC--------C-----------CCc
Q 044627 260 RDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRF--------G-----------HGS 318 (524)
Q Consensus 260 ~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~--------~-----------~gs 318 (524)
++.. + +++.+|.+|.+... .+-+.|.+....+ + +-+
T Consensus 95 ---il~~-------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 95 ---ILTN-------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp ---HHHT----------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred ---HHHh-------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 1111 1 23457777888533 3333333322111 1 122
Q ss_pred EEEEecCChhhhhhcC--CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044627 319 RVIVTTRDKKVLDKYG--VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSF 392 (524)
Q Consensus 319 ~IIiTTR~~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 392 (524)
.|=.|||...+..-+. ..-..+++..+.+|-.++..+.+..-+ .+-..+.+.+|+..+.|-|--..-+-...
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3445788654433221 234568999999999999988764332 22346778999999999996554444333
No 44
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.63 E-value=2.5e-06 Score=85.54 Aligned_cols=182 Identities=14% Similarity=0.143 Sum_probs=106.0
Q ss_pred CCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHH
Q 044627 185 NSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQIL 264 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll 264 (524)
.-.+++|++..++.+..++..+. .+.+.|+|.+|+||||+|+.+++.+........++. +. .+.......+. ..+
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~~~~~~-~~i 89 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERGIDVIR-NKI 89 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccchHHHH-HHH
Confidence 34569999999999999997533 445799999999999999999997643321112222 00 11111111111 111
Q ss_pred HHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh--hHHHHhCCCCCCCCCcEEEEecCCh-hhhhh-cCCCeEEE
Q 044627 265 SQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG--HSEYLTGGLSRFGHGSRVIVTTRDK-KVLDK-YGVDYVYK 340 (524)
Q Consensus 265 ~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~~-~~~~~~~~ 340 (524)
..+....+ .....+-++++|+++... ..+.+...+....+.+.+|+++... .+... ......++
T Consensus 90 ~~~~~~~~------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 90 KEFARTAP------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred HHHHhcCC------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheee
Confidence 11111000 001235589999996442 2344444444344566777766432 22111 11234689
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHH
Q 044627 341 VEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (524)
Q Consensus 341 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 385 (524)
+.+++.++....+...+...+.. -..+.+..+++.++|.+--+
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 99999999988888776443321 22556888999999987653
No 45
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.61 E-value=3.3e-07 Score=80.11 Aligned_cols=123 Identities=18% Similarity=0.163 Sum_probs=70.4
Q ss_pred cchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhC
Q 044627 190 VGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILG 269 (524)
Q Consensus 190 vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~ 269 (524)
+|++..+..+...+... ..+.+.|+|.+|+|||+|++.+++.+......++++. .............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~----~~~~~~~~~~~~~~~~~--- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN----ASDLLEGLVVAELFGHF--- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe----hhhhhhhhHHHHHhhhh---
Confidence 47888999998888653 3567889999999999999999998754333455554 11111111111000000
Q ss_pred CCCcccCCchHHHHHHhccCCeEEEecCCCCh--h---hHHHHhCCCCCC---CCCcEEEEecCChh
Q 044627 270 ENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--G---HSEYLTGGLSRF---GHGSRVIVTTRDKK 328 (524)
Q Consensus 270 ~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~---~~~~l~~~~~~~---~~gs~IIiTTR~~~ 328 (524)
............++.+||+||++.. . .+..+....... ..+..+|+||....
T Consensus 72 -------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111222446789999999853 2 222223222221 35778888887643
No 46
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=2.1e-07 Score=93.67 Aligned_cols=195 Identities=14% Similarity=0.063 Sum_probs=113.5
Q ss_pred cCCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc----ccceeEeeeecccccccCHH
Q 044627 182 HFGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ----FEGRSFMANVREESKRVELE 257 (524)
Q Consensus 182 ~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~ 257 (524)
.|.....++|.+...+.+...+..+. -...+.|+|+.|+||||||..+++.+-.. +...... ...+-.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCC
Confidence 45667789999999999999997653 35578899999999999999999976542 1111000 000011
Q ss_pred HHHHHHHHH-------HhCC---C-----CcccCCchHHHHHHhc-----cCCeEEEecCCCCh--hhHHHHhCCCCCCC
Q 044627 258 HLRDQILSQ-------ILGE---N-----IIKTSIPPRYINKRLQ-----QMKVCIILDNVDKF--GHSEYLTGGLSRFG 315 (524)
Q Consensus 258 ~l~~~ll~~-------l~~~---~-----~~~~~~~~~~l~~~L~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~ 315 (524)
...+.+... +... . ..+..+.+..+.+.+. +++-++|+|+++.. ...+.++..+....
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 122222111 0000 0 0010111223333332 35668999999744 34555555554433
Q ss_pred CCcEEEEec-CChhhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHH
Q 044627 316 HGSRVIVTT-RDKKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVL 388 (524)
Q Consensus 316 ~gs~IIiTT-R~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 388 (524)
....+|++| +...+.... .....+++.+++.++..+++........ -..+.+..+++.++|.|.....+
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 455544444 433332221 2246899999999999999987432111 11445778999999999865433
No 47
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.61 E-value=2.5e-06 Score=86.96 Aligned_cols=184 Identities=15% Similarity=0.047 Sum_probs=111.4
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc----cc-----------------ce
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ----FE-----------------GR 241 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~----f~-----------------~~ 241 (524)
|..-..++|.+..++.+.+.+..+. -.+.+.++|++|+||||+|+.+++.+... +. ..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 3445678999999999999887543 34578899999999999999999875422 10 11
Q ss_pred eEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcE
Q 044627 242 SFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSR 319 (524)
Q Consensus 242 ~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 319 (524)
.++.. ....... -.+.+...+... -..+.+-++|+|+++.. .....++..+....+.+.
T Consensus 89 ~~~~~----~~~~~~~-~~~~l~~~~~~~--------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 IEIDA----ASNNGVD-DIREILDNVKYA--------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred EEeec----cccCCHH-HHHHHHHHHhcC--------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 22210 0001111 111222211100 01234558899999654 345566655554445667
Q ss_pred EEEecCChh-hhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHH
Q 044627 320 VIVTTRDKK-VLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVL 388 (524)
Q Consensus 320 IIiTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 388 (524)
+|++|.+.. +.... .....+++.+++.++..+++...+-..+.. -..+.+..+++.++|.|..+...
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHH
Confidence 677765543 22221 224578899999999998888766433321 12466788899999998765443
No 48
>PRK08727 hypothetical protein; Validated
Probab=98.60 E-value=8.6e-07 Score=84.54 Aligned_cols=169 Identities=11% Similarity=0.052 Sum_probs=96.9
Q ss_pred CCCccchhh-hHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHH
Q 044627 186 SEDLVGVDS-HIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQIL 264 (524)
Q Consensus 186 ~~~~vGR~~-el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll 264 (524)
.++|++... .+..+..+... .....+.|+|.+|+|||+|+.++++........+.|+. .. +....+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~----~~------~~~~~~~ 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP----LQ------AAAGRLR 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe----HH------HhhhhHH
Confidence 345665443 33333333322 12356999999999999999999998766555566766 11 1111111
Q ss_pred HHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh----hhHHHHhCCCCC-CCCCcEEEEecCChh---------hh
Q 044627 265 SQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF----GHSEYLTGGLSR-FGHGSRVIVTTRDKK---------VL 330 (524)
Q Consensus 265 ~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IIiTTR~~~---------~~ 330 (524)
. ..+.+ .+.-+||+||++.. ..-+.+...++. ...+..||+||+... +.
T Consensus 86 ~----------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 86 D----------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred H----------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence 1 11111 12348999999632 111222222211 123667999998531 22
Q ss_pred hhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHH
Q 044627 331 DKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (524)
Q Consensus 331 ~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 385 (524)
..+.....+++++++.++-.+++.+.+....- .-..+...-|++.++|-.-.+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHH
Confidence 22223457899999999999999987654321 122556778888887655444
No 49
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.9e-06 Score=90.22 Aligned_cols=187 Identities=14% Similarity=0.032 Sum_probs=109.8
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc----c-----------------cce
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ----F-----------------EGR 241 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~----f-----------------~~~ 241 (524)
|..-+.+||.+...+.|...+..+. -...+.++|++|+||||+|+.+++.+... + ...
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 3455679999998888888876543 24567899999999999999999865321 0 011
Q ss_pred eEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcE
Q 044627 242 SFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSR 319 (524)
Q Consensus 242 ~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 319 (524)
..+. .+...+...+ +.+...... .-..+++-++|+|+++.. +..+.|+..+....+...
T Consensus 89 ~el~----aa~~~gid~i-R~i~~~~~~--------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 89 IELD----AASNRGIDEI-RKIRDAVGY--------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred EEEe----CcccCCHHHH-HHHHHHHhh--------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 1111 1111112211 111111100 001245679999999644 345666666554344455
Q ss_pred EEEecCCh-hhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcC-ChHHHHHHHHH
Q 044627 320 VIVTTRDK-KVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANG-SSLALNVLRSS 391 (524)
Q Consensus 320 IIiTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLal~~~~~~ 391 (524)
+|++|.++ .+.... .....+++.+++.++....+...+...+. .-..+.+..|++.++| .+.++..+-..
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44444442 232221 23467899999999998888877643321 1224567788887754 56777766553
No 50
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=2e-06 Score=87.91 Aligned_cols=174 Identities=9% Similarity=0.039 Sum_probs=104.2
Q ss_pred CCccchhhhHHhhhhhhhcCCC--------CceEEEeeccccchHHHHHHHHHhhhcccc--------------------
Q 044627 187 EDLVGVDSHIQRINSLLCIGLP--------DFRMVRPWDMHGIAKTDIARAILNQISSQF-------------------- 238 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~--------~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-------------------- 238 (524)
..++|-+..++.|.+.+..+.. -.+.+.++|++|+|||++|..+++.+-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4588999999999998876431 256788999999999999999998653322
Q ss_pred cceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCC
Q 044627 239 EGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGH 316 (524)
Q Consensus 239 ~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~ 316 (524)
+...++.. ......+..+ +.+....... -..+++-++|+|+++.. .....|+..+....+
T Consensus 85 pD~~~i~~---~~~~i~i~~i-R~l~~~~~~~--------------p~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 85 PDVRVVAP---EGLSIGVDEV-RELVTIAARR--------------PSTGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred CCEEEecc---ccccCCHHHH-HHHHHHHHhC--------------cccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 11122210 0000111111 1111111000 01234558888999754 334556655554445
Q ss_pred CcEEEEecCCh-hhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHH
Q 044627 317 GSRVIVTTRDK-KVLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (524)
Q Consensus 317 gs~IIiTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 385 (524)
+..+|++|.+. .+... ......+.+.+++.++..+.+..... .+ .+.+..++..++|.|...
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----~~---~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----VD---PETARRAARASQGHIGRA 210 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC----CC---HHHHHHHHHHcCCCHHHH
Confidence 66666666654 33322 12346899999999999988874321 11 345778899999999644
No 51
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=1.1e-06 Score=94.39 Aligned_cols=194 Identities=12% Similarity=0.041 Sum_probs=110.9
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQ 262 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 262 (524)
|.....+||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+-.... .. ....+.....+.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~----~~-----~~pCg~C~~C~~ 81 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETG----IT-----ATPCGECDNCRE 81 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccC----CC-----CCCCCCCHHHHH
Confidence 3455779999999999999997643 2456789999999999999999997643210 00 000000011111
Q ss_pred HHHHHhCCCCcc---cCCchHHHHHH--------hccCCeEEEecCCCC--hhhHHHHhCCCCCCCCCcEEEEecCC-hh
Q 044627 263 ILSQILGENIIK---TSIPPRYINKR--------LQQMKVCIILDNVDK--FGHSEYLTGGLSRFGHGSRVIVTTRD-KK 328 (524)
Q Consensus 263 ll~~l~~~~~~~---~~~~~~~l~~~--------L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiTTR~-~~ 328 (524)
+...-...-..+ .....+.+++. ..++.-++|+|+++. ....+.|+..+....+..++|++|.+ ..
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 110000000000 00111112111 234567999999964 34566666665544456655555544 44
Q ss_pred hhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH-HHHHH
Q 044627 329 VLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVL 388 (524)
Q Consensus 329 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 388 (524)
+... ..-...+++.+|+.++..+.+...+-..+. ....+....|++.++|.+- |+.++
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4322 223568999999999999988876533221 1224556789999999775 34443
No 52
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2.5e-06 Score=85.29 Aligned_cols=175 Identities=14% Similarity=0.179 Sum_probs=109.4
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc-----cccce-eEeeeecccccccCHHHHH
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS-----QFEGR-SFMANVREESKRVELEHLR 260 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~-----~f~~~-~wv~~~~~~~~~~~~~~l~ 260 (524)
..++|-+...+.+.+.+..+. -.+...++|+.|+||||+|..+++.+.. .++.. .|.. . .........+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~--~~~~i~v~~i- 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-I--NKKSIGVDDI- 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-c--cCCCCCHHHH-
Confidence 457898888999999887542 3567789999999999999999996532 12222 2322 0 0111222221
Q ss_pred HHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCC--ChhhHHHHhCCCCCCCCCcEEEEecCChhhh-hh-cCCC
Q 044627 261 DQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVD--KFGHSEYLTGGLSRFGHGSRVIVTTRDKKVL-DK-YGVD 336 (524)
Q Consensus 261 ~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~-~~-~~~~ 336 (524)
+.+...+...+ ..+++-++|+|+++ +......|+..+....+++.+|++|.+...+ .. ....
T Consensus 79 r~~~~~~~~~p--------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 79 RNIIEEVNKKP--------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHHHHHhcCc--------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 12222221110 12344566777764 5556777887777666788888888765432 21 1234
Q ss_pred eEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHH
Q 044627 337 YVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALN 386 (524)
Q Consensus 337 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 386 (524)
..+++.+++.++....+.+... .. ..+.+..++..++|.|.-+.
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~---~~---~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYN---DI---KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhc---CC---CHHHHHHHHHHcCCCHHHHH
Confidence 6899999999999888865531 11 13346788999999886543
No 53
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=2.2e-06 Score=90.03 Aligned_cols=186 Identities=16% Similarity=0.074 Sum_probs=109.5
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccccc-------ceeEeeeecccccccC
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFE-------GRSFMANVREESKRVE 255 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~-------~~~wv~~~~~~~~~~~ 255 (524)
|.....+||-+..++.|...+..+. -.+.+.++|++|+||||+|+.+++.+-.... ..|..+
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C---------- 85 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC---------- 85 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----------
Confidence 3455679999999999988776542 3467889999999999999999997643210 011111
Q ss_pred HHHHHHHHHHHHhCCCCcc---cCCchHHHHHH--------hccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEE
Q 044627 256 LEHLRDQILSQILGENIIK---TSIPPRYINKR--------LQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIV 322 (524)
Q Consensus 256 ~~~l~~~ll~~l~~~~~~~---~~~~~~~l~~~--------L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIi 322 (524)
.....+..........+ .....+.+++. +.+++-++|+|+++.. ..++.|+..+....+.+.+|+
T Consensus 86 --~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~ 163 (507)
T PRK06645 86 --TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIF 163 (507)
T ss_pred --hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEE
Confidence 00000000000000000 01112222221 2345678999999754 446667666654445666554
Q ss_pred -ecCChhhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH
Q 044627 323 -TTRDKKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL 383 (524)
Q Consensus 323 -TTR~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (524)
||+...+.... .....+++.+++.++..+.+...+...+.. -..+.+..|++.++|.+-
T Consensus 164 aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 164 ATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSAR 224 (507)
T ss_pred EeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 55544443322 234578999999999999998877543321 124556788999988763
No 54
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.56 E-value=1.8e-07 Score=80.71 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=74.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhccc-----ccceeEeeeecccccccCHHHHHHHHHHHHhCCCCc--ccCCchHHH
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQ-----FEGRSFMANVREESKRVELEHLRDQILSQILGENII--KTSIPPRYI 282 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~--~~~~~~~~l 282 (524)
.+.+.|+|.+|+|||+++..+++.+... -..++|+. .....+...+...++..+...... ......+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 4688999999999999999999976543 34566776 444558899999999999877654 244455666
Q ss_pred HHHhccCC-eEEEecCCCCh---hhHHHHhCCCCCCCCCcEEEEecCC
Q 044627 283 NKRLQQMK-VCIILDNVDKF---GHSEYLTGGLSRFGHGSRVIVTTRD 326 (524)
Q Consensus 283 ~~~L~~~~-~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IIiTTR~ 326 (524)
.+.+...+ .+||+|+++.. +.++.+....+ ..+.++|+..+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 77776655 49999999655 23444433333 456777776664
No 55
>PRK05642 DNA replication initiation factor; Validated
Probab=98.55 E-value=2.2e-06 Score=81.73 Aligned_cols=152 Identities=16% Similarity=0.215 Sum_probs=90.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccC
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQM 289 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~ 289 (524)
...+.|+|.+|+|||.|++++++.+...-..++|+. . .++... ...+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~----~------~~~~~~----------------~~~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP----L------AELLDR----------------GPELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee----H------HHHHhh----------------hHHHHHhhhhC
Confidence 367889999999999999999987655445567776 1 111111 01122223332
Q ss_pred CeEEEecCCCCh---hhH-HHHhCCCCC-CCCCcEEEEecCChhh---------hhhcCCCeEEEcCCCCHHHHHHHHHH
Q 044627 290 KVCIILDNVDKF---GHS-EYLTGGLSR-FGHGSRVIVTTRDKKV---------LDKYGVDYVYKVEGFNYRESLEIFCY 355 (524)
Q Consensus 290 ~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IIiTTR~~~~---------~~~~~~~~~~~l~~L~~~ea~~L~~~ 355 (524)
. +||+||+... ..+ +.+...++. ...|..+|+||+.... ...+.....+++.+++.++-.+++..
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 3 6889999522 222 223222221 1246778998875321 11122346789999999999999986
Q ss_pred hhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHH
Q 044627 356 YAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRS 390 (524)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 390 (524)
++....- .-.+++..-|++.+.|-.-.+..+-.
T Consensus 178 ka~~~~~--~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 178 RASRRGL--HLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 6543321 12256777888888877666554433
No 56
>PF14516 AAA_35: AAA-like domain
Probab=98.54 E-value=2e-05 Score=79.20 Aligned_cols=276 Identities=12% Similarity=0.104 Sum_probs=148.6
Q ss_pred ccCCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccccc--ccCHHH
Q 044627 181 SHFGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESK--RVELEH 258 (524)
Q Consensus 181 ~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~ 258 (524)
..+......|+|...-+++.+.|..+ ...+.|.|+..+|||+|...+.+.....--.+++++ +..... ..+...
T Consensus 5 ~~~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 5 PLPLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQ 80 (331)
T ss_pred CCCCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHH
Confidence 34556677889996666666666542 358899999999999999999987754422344554 222221 234554
Q ss_pred HHHHH----HHHHhCCCC-c-c-------cCCchHHHHHHh-c--cCCeEEEecCCCChhh----HHHHhCCC-------
Q 044627 259 LRDQI----LSQILGENI-I-K-------TSIPPRYINKRL-Q--QMKVCIILDNVDKFGH----SEYLTGGL------- 311 (524)
Q Consensus 259 l~~~l----l~~l~~~~~-~-~-------~~~~~~~l~~~L-~--~~~~LlVlDdv~~~~~----~~~l~~~~------- 311 (524)
+.+.+ ..++..... + . .......+.+.+ . +++.+|+||+++..-. .+.+...+
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 44444 444433221 0 0 122333444433 2 4799999999974322 12222211
Q ss_pred CCCCC-Cc--EEEEecCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH
Q 044627 312 SRFGH-GS--RVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL 383 (524)
Q Consensus 312 ~~~~~-gs--~IIiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (524)
..... .. -|++.+........ .+....++|++++.+|...|+.++... .. ....+.|...+||+|.
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPY 234 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHH
Confidence 10001 11 22332221111111 123457899999999999998877422 11 2238999999999999
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHhcCCCCCCccHHHHHHHhHhcCChHHHHHHhhcccccCCCCHHHHHHHHhhc---cc
Q 044627 384 ALNVLRSSFYRK--SKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFFNGEGRDYVKIILNNR---YL 458 (524)
Q Consensus 384 al~~~~~~l~~~--~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~~~~~~~l~~l~~~~---~~ 458 (524)
-+..++..+... +.++....-..... . | +++.+.++..+--- +--.+.+..++... ..
T Consensus 235 Lv~~~~~~l~~~~~~~~~l~~~a~~~~~----~--------~---~~hL~~l~~~L~~~--~~L~~~~~~il~~~~~~~~ 297 (331)
T PF14516_consen 235 LVQKACYLLVEEQITLEQLLEEAITDNG----I--------Y---NDHLDRLLDRLQQN--PELLEAYQQILFSGEPVDL 297 (331)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhcc----c--------H---HHHHHHHHHHHccC--HHHHHHHHHHHhCCCCccc
Confidence 999999998653 33222111111000 0 0 11222222222000 00122233344432 22
Q ss_pred hhHhHHHHhhCCceEEeCCeEEccH
Q 044627 459 VHYGLNILAGKALITISNNKLQMRD 483 (524)
Q Consensus 459 ~~~~l~~L~~~sLi~~~~~~~~mH~ 483 (524)
.......|...|||...+|.+.++-
T Consensus 298 ~~~~~~~L~~~GLV~~~~~~~~~~n 322 (331)
T PF14516_consen 298 DSDDIYKLESLGLVKRDGNQLEVRN 322 (331)
T ss_pred ChHHHHHHHHCCeEEEeCCEEEEEc
Confidence 3345778999999999888876653
No 57
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.8e-06 Score=89.15 Aligned_cols=189 Identities=14% Similarity=-0.005 Sum_probs=109.0
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccccc---ceeEeeeecccccccCHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFE---GRSFMANVREESKRVELEHL 259 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~l 259 (524)
|.....+||-+..+..|..++..+. -...+.++|+.|+||||+|+.+++.+..... ..|..+ ..-..+
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C--------~sC~~i 84 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC--------TSCLEI 84 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC--------cHHHHH
Confidence 3455679999999999999887643 2346789999999999999999997643211 011111 000010
Q ss_pred HHHHHHHHhCCCCcccCCchHHHH---HH-----hccCCeEEEecCCCC--hhhHHHHhCCCCCCCCCcEEEEec-CChh
Q 044627 260 RDQILSQILGENIIKTSIPPRYIN---KR-----LQQMKVCIILDNVDK--FGHSEYLTGGLSRFGHGSRVIVTT-RDKK 328 (524)
Q Consensus 260 ~~~ll~~l~~~~~~~~~~~~~~l~---~~-----L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiTT-R~~~ 328 (524)
.......+..-.. ......+.++ +. ..++.-++|+|+++. .+..+.|+..+........+|++| ....
T Consensus 85 ~~g~~~dviEIda-as~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~k 163 (484)
T PRK14956 85 TKGISSDVLEIDA-ASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163 (484)
T ss_pred HccCCccceeech-hhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhh
Confidence 0000000000000 0011111111 11 234567999999964 445777776665444455555444 4333
Q ss_pred hhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH
Q 044627 329 VLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL 383 (524)
Q Consensus 329 ~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (524)
+.... .....|.+.+++.++..+.+.+.+...+. .-..+.+..|++.++|.+-
T Consensus 164 I~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred ccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHH
Confidence 32221 23457999999999998888876543321 1235567889999999874
No 58
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.53 E-value=8.2e-06 Score=76.96 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=94.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhccccc--ceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFE--GRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRL 286 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L 286 (524)
....+.|+|..|+|||.|.+++++.+...++ .++++. ...+...+...+.. .....+++.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~-------~~~~~~~~~~ 95 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRD-------GEIEEFKDRL 95 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHT-------TSHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHc-------ccchhhhhhh
Confidence 3456889999999999999999998766544 345554 34555555554433 2234455555
Q ss_pred ccCCeEEEecCCCChhh---H-HHHhCCCCC-CCCCcEEEEecCCh-h--------hhhhcCCCeEEEcCCCCHHHHHHH
Q 044627 287 QQMKVCIILDNVDKFGH---S-EYLTGGLSR-FGHGSRVIVTTRDK-K--------VLDKYGVDYVYKVEGFNYRESLEI 352 (524)
Q Consensus 287 ~~~~~LlVlDdv~~~~~---~-~~l~~~~~~-~~~gs~IIiTTR~~-~--------~~~~~~~~~~~~l~~L~~~ea~~L 352 (524)
++ -=+|++||++.... + +.+...++. ...|.+||+|++.. . +...+...-.+++++++.++-.++
T Consensus 96 ~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 RS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp CT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred hc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 53 34788999964321 1 122211111 12467899999643 1 122233456899999999999999
Q ss_pred HHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 044627 353 FCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLR 389 (524)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 389 (524)
+.+.+....-. -.++++.-|++.+.+..-.|..+-
T Consensus 175 l~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 175 LQKKAKERGIE--LPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHHH
Confidence 99887544322 235667777777776666555443
No 59
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=1.5e-06 Score=93.08 Aligned_cols=191 Identities=15% Similarity=0.049 Sum_probs=107.5
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQ 262 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 262 (524)
|.....+||.+..++.|..++..+. -...+.++|..|+||||+|+.+++.+...-... +.. + +.......
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~~p-C-------g~C~sCr~ 81 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GEP-C-------GVCQSCTQ 81 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CCC-C-------cccHHHHH
Confidence 3455679999999999999998642 356788999999999999999998653321000 000 0 00000000
Q ss_pred HHHHHhCCC--Cc-ccCCchHHHHHHh--------ccCCeEEEecCCCChh--hHHHHhCCCCCCCCCcEEEEecCCh-h
Q 044627 263 ILSQILGEN--II-KTSIPPRYINKRL--------QQMKVCIILDNVDKFG--HSEYLTGGLSRFGHGSRVIVTTRDK-K 328 (524)
Q Consensus 263 ll~~l~~~~--~~-~~~~~~~~l~~~L--------~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~ 328 (524)
+...-.... .+ ......+.+++.+ .+++-++|+|+++... ....|+..+......+++|++|.+. .
T Consensus 82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~k 161 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHK 161 (709)
T ss_pred HhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 000000000 00 0011112222221 2456689999997544 3445555544333566666666543 2
Q ss_pred hhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHH
Q 044627 329 VLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (524)
Q Consensus 329 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 385 (524)
+... .+....+++.+++.++..+.+.+.+-..+.. -..+.+..|++.++|.+.-+
T Consensus 162 L~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 162 VPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred cchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHHH
Confidence 2211 1223467889999999999888776443321 22456789999999988443
No 60
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.53 E-value=3.9e-06 Score=77.34 Aligned_cols=159 Identities=11% Similarity=0.093 Sum_probs=93.4
Q ss_pred hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc---------------------ccceeEeeeecccccccCH
Q 044627 198 RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ---------------------FEGRSFMANVREESKRVEL 256 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~wv~~~~~~~~~~~~ 256 (524)
.|.+.+..+ .-...+.++|+.|+|||++|+.+++.+... ++...++... ....+.
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~~~~ 78 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQSIKV 78 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCcCCH
Confidence 344455432 124678899999999999999999976432 1112222200 001111
Q ss_pred HHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCCh-hhhhhc
Q 044627 257 EHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDK-KVLDKY 333 (524)
Q Consensus 257 ~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~~~ 333 (524)
. ..+.+...+.... ..+.+-++|+||++.. +..+.|+..+....+.+.+|++|++. .+....
T Consensus 79 ~-~i~~i~~~~~~~~--------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 79 D-QVRELVEFLSRTP--------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred H-HHHHHHHHHccCc--------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH
Confidence 1 1111111111100 1245668999999654 34566666665555567777777654 222211
Q ss_pred -CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH
Q 044627 334 -GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL 383 (524)
Q Consensus 334 -~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (524)
.....+++.+++.++..+.+.+.. .+ .+.+..+++.++|.|.
T Consensus 144 ~sr~~~~~~~~~~~~~~~~~l~~~g-----i~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 144 RSRCQVLPFPPLSEEALLQWLIRQG-----IS---EEAAELLLALAGGSPG 186 (188)
T ss_pred HhhcEEeeCCCCCHHHHHHHHHHcC-----CC---HHHHHHHHHHcCCCcc
Confidence 134689999999999999888761 11 4568899999999885
No 61
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.53 E-value=3.4e-06 Score=80.59 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=89.2
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccC
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQM 289 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~ 289 (524)
.+.+.|+|++|+|||+|+..+++.....-..+.|+. .... ...... +.+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~----~~~~---~~~~~~-------------------~~~~~~~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP----LDKR---AWFVPE-------------------VLEGMEQ- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE----HHHH---hhhhHH-------------------HHHHhhh-
Confidence 457889999999999999999997665444556665 2110 000001 1111111
Q ss_pred CeEEEecCCCCh---hhHHH-HhCCCCCC-CCC-cEEEEecCChh---------hhhhcCCCeEEEcCCCCHHHHHHHHH
Q 044627 290 KVCIILDNVDKF---GHSEY-LTGGLSRF-GHG-SRVIVTTRDKK---------VLDKYGVDYVYKVEGFNYRESLEIFC 354 (524)
Q Consensus 290 ~~LlVlDdv~~~---~~~~~-l~~~~~~~-~~g-s~IIiTTR~~~---------~~~~~~~~~~~~l~~L~~~ea~~L~~ 354 (524)
--+|++||+... ..++. +...+... ..| .++|+||+.+. +...+.....+++++++.++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 237899999542 22211 11111110 123 47999998542 22233345689999999999999988
Q ss_pred HhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 044627 355 YYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLR 389 (524)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 389 (524)
+.+.... -.-.++...-|++.+.|..-.+..+-
T Consensus 178 ~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 178 LRARLRG--FELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 7654322 11235677888888887766654443
No 62
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=4.1e-06 Score=89.83 Aligned_cols=188 Identities=15% Similarity=0.074 Sum_probs=109.8
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccc----cceeEeeeecccccccCHHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQF----EGRSFMANVREESKRVELEHL 259 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~l 259 (524)
...+++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+-..- .+... ...+....
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~--------~pCg~C~~ 83 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA--------TPCGVCQA 83 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC--------CCCCccHH
Confidence 445679999999999999987643 356778999999999999999988653210 00000 00000111
Q ss_pred HHHHHHHHhCCCCcc------cCCchHHHHHHh--------ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEe
Q 044627 260 RDQILSQILGENIIK------TSIPPRYINKRL--------QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVT 323 (524)
Q Consensus 260 ~~~ll~~l~~~~~~~------~~~~~~~l~~~L--------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiT 323 (524)
.+.+.. +...+. .....+.+++.+ .++.-++|||+++.. ...+.|+..+......+.+|++
T Consensus 84 C~~i~~---g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~ 160 (618)
T PRK14951 84 CRDIDS---GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160 (618)
T ss_pred HHHHHc---CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEE
Confidence 111100 000000 111222333322 234458899999743 4566677766654456566655
Q ss_pred cCC-hhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHH
Q 044627 324 TRD-KKVLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (524)
Q Consensus 324 TR~-~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 385 (524)
|.+ ..+... ......+++.+++.++..+.+.+.+...+.. -..+.+..|++.++|.+--+
T Consensus 161 Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDA 222 (618)
T ss_pred ECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 543 333322 2235689999999999998888766443321 12456788889998876443
No 63
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.52 E-value=1.6e-06 Score=95.01 Aligned_cols=171 Identities=16% Similarity=0.218 Sum_probs=100.0
Q ss_pred CCCCCccchhhhHH---hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHH
Q 044627 184 GNSEDLVGVDSHIQ---RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLR 260 (524)
Q Consensus 184 ~~~~~~vGR~~el~---~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 260 (524)
...+.|+|.+..+. .+.+.+.. +....+.|+|++|+||||||+.+++.....|. .+. .+ ..+...+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln----a~-~~~i~di- 93 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN----AV-LAGVKDL- 93 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh----hh-hhhhHHH-
Confidence 34467899998885 45566654 34567789999999999999999997765542 122 00 0111111
Q ss_pred HHHHHHHhCCCCcccCCchHHHHHHh--ccCCeEEEecCCCC--hhhHHHHhCCCCCCCCCcEEEE--ecCChh--hhhh
Q 044627 261 DQILSQILGENIIKTSIPPRYINKRL--QQMKVCIILDNVDK--FGHSEYLTGGLSRFGHGSRVIV--TTRDKK--VLDK 332 (524)
Q Consensus 261 ~~ll~~l~~~~~~~~~~~~~~l~~~L--~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIi--TTR~~~--~~~~ 332 (524)
+.++. ...+.+ .+++.+||||+++. ..+.+.++..+. .+..++| ||.++. +...
T Consensus 94 r~~i~---------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 94 RAEVD---------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred HHHHH---------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhH
Confidence 11111 111111 24567999999964 444566665443 3554555 344431 1111
Q ss_pred -cCCCeEEEcCCCCHHHHHHHHHHhhhc-----CCCCCccHHHHHHHHHHHhcCChH
Q 044627 333 -YGVDYVYKVEGFNYRESLEIFCYYAFR-----QNHCPGDLLVLSDNVVDYANGSSL 383 (524)
Q Consensus 333 -~~~~~~~~l~~L~~~ea~~L~~~~~~~-----~~~~~~~~~~~~~~i~~~~~g~PL 383 (524)
......+.+++|+.++...++.+.+-. ......-.++....|++.+.|..-
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 112357899999999999998876531 011112235567888888888643
No 64
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=4.9e-06 Score=86.82 Aligned_cols=179 Identities=15% Similarity=0.102 Sum_probs=109.6
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc---------------------ccce
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ---------------------FEGR 241 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~ 241 (524)
|....++||-+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+-.. +..+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 3455779999999999988887543 24578899999999999999998854221 1122
Q ss_pred eEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcE
Q 044627 242 SFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSR 319 (524)
Q Consensus 242 ~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 319 (524)
+.++ .+...+..++ +.+....... -..++.-++|+|+++.. ...+.|+..+....+.+.
T Consensus 88 ~eid----aas~~~vddI-R~Iie~~~~~--------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 88 IEID----AASNTSVDDI-KVILENSCYL--------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred EEEe----cccCCCHHHH-HHHHHHHHhc--------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence 2222 1111122221 1111111000 01235568999999643 346666666665556666
Q ss_pred EEEecCC-hhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH
Q 044627 320 VIVTTRD-KKVLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL 383 (524)
Q Consensus 320 IIiTTR~-~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (524)
+|++|.+ ..+... ......+++.+++.++..+.+.+.+...+.. -..+.+..|++.++|.+-
T Consensus 149 fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 149 FILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMR 212 (491)
T ss_pred EEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 6665543 344332 2234678999999999999888876543321 224557788888988774
No 65
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=5.3e-06 Score=92.09 Aligned_cols=184 Identities=11% Similarity=-0.033 Sum_probs=107.4
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccccc---ceeEeeeecccccccCHHHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFE---GRSFMANVREESKRVELEHLR 260 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~l~ 260 (524)
.....+||.+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+..... .-|=.| ...
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C------------~sC 78 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC------------DSC 78 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc------------HHH
Confidence 345679999999999999997543 2456889999999999999999997643210 000000 000
Q ss_pred HHHHHHHhCCCCcc------cCCchHHHHH---H-----hccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEec
Q 044627 261 DQILSQILGENIIK------TSIPPRYINK---R-----LQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTT 324 (524)
Q Consensus 261 ~~ll~~l~~~~~~~------~~~~~~~l~~---~-----L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTT 324 (524)
..+...... ..++ ....++.+++ . ..++.-++|||+++.. ...+.|+..+......+.+|++|
T Consensus 79 ~~~~~g~~~-~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 79 VALAPGGPG-SLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred HHHHcCCCC-CCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 000000000 0000 0011111211 1 2345568899999744 44666666666555666666555
Q ss_pred C-Chhhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH
Q 044627 325 R-DKKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL 383 (524)
Q Consensus 325 R-~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (524)
. ...+...+ .....|++..++.++..+++.+.+-..+.. ...+.+..|++.++|.+.
T Consensus 158 t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 158 TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 4 44444332 235689999999999988887765332211 224456788999999874
No 66
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.49 E-value=2.5e-06 Score=89.00 Aligned_cols=166 Identities=12% Similarity=0.175 Sum_probs=100.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhccccc--ceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFE--GRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQ 287 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~ 287 (524)
...+.|+|..|+|||+|++++++.+....+ .++++. ...+...+...+.... ...+.+++.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~-----~~~~~~~~~~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH-----KEIEQFKNEIC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh-----hHHHHHHHHhc
Confidence 456889999999999999999997654322 344444 2445555555443210 11233334444
Q ss_pred cCCeEEEecCCCChh----hHHHHhCCCCC-CCCCcEEEEecCCh-hh--------hhhcCCCeEEEcCCCCHHHHHHHH
Q 044627 288 QMKVCIILDNVDKFG----HSEYLTGGLSR-FGHGSRVIVTTRDK-KV--------LDKYGVDYVYKVEGFNYRESLEIF 353 (524)
Q Consensus 288 ~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IIiTTR~~-~~--------~~~~~~~~~~~l~~L~~~ea~~L~ 353 (524)
+ .-+||+||+.... ..+.|...++. ...+..||+||... .. ...+...-...+++++.++-.+++
T Consensus 206 ~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 Q-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred c-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 3 4488899995321 22333222211 12355788887643 22 222233456789999999999999
Q ss_pred HHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHHH
Q 044627 354 CYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSS 391 (524)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 391 (524)
.+.+-..+....-.++.+.-|++.++|.|-.+..+...
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 88874332111233678899999999999887665543
No 67
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=2.8e-06 Score=89.89 Aligned_cols=184 Identities=15% Similarity=0.079 Sum_probs=109.3
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc---------------------ccce
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ---------------------FEGR 241 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~ 241 (524)
|....++||-+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+-.. |+.+
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 3455679999999999999997643 24567899999999999999999965321 1112
Q ss_pred eEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCC--hhhHHHHhCCCCCCCCCcE
Q 044627 242 SFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDK--FGHSEYLTGGLSRFGHGSR 319 (524)
Q Consensus 242 ~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ 319 (524)
+.++ .+...++..+ +.++..+... -..++.-++|+|+++. ....+.++..+....+.++
T Consensus 91 ~eid----aas~~~v~~i-R~l~~~~~~~--------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 91 FEVD----AASRTKVEDT-RELLDNIPYA--------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred EEEc----ccccCCHHHH-HHHHHHHhhc--------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 2222 1111222221 1222211110 0124556899999974 3456666666554445676
Q ss_pred EEEecCCh-hhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHH-HHHH
Q 044627 320 VIVTTRDK-KVLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA-LNVL 388 (524)
Q Consensus 320 IIiTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa-l~~~ 388 (524)
+|++|.+. .+... ......+++.+++.++..+.+...+-..+.. -..+.+..|++.++|.+.- +..+
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 66655443 33222 1223568899999998887766655332211 1244567888899887743 3333
No 68
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=5.1e-06 Score=88.43 Aligned_cols=183 Identities=14% Similarity=0.081 Sum_probs=108.2
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccc---------------------ccee
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQF---------------------EGRS 242 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~ 242 (524)
.....+||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+.... ...+
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 445679999999999999987543 245678999999999999999998764321 1111
Q ss_pred EeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh--hHHHHhCCCCCCCCCcEE
Q 044627 243 FMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG--HSEYLTGGLSRFGHGSRV 320 (524)
Q Consensus 243 wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~I 320 (524)
++. .+....... .+.++...... -..+++-++|+|+++... ....|+..+......+.+
T Consensus 92 ei~----~~~~~~vd~-ir~l~~~~~~~--------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 92 EVD----AASNTQVDA-MRELLDNAQYA--------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred Eee----ccccCCHHH-HHHHHHHHhhC--------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 111 010111111 11111111100 012456689999997553 355666665544456666
Q ss_pred EEecCC-hhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH-HHHHH
Q 044627 321 IVTTRD-KKVLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVL 388 (524)
Q Consensus 321 IiTTR~-~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 388 (524)
|++|.+ ..+... ......+++.+++.++..+.+.+.+...+. ....+.+..|++.++|.+- |+..+
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 655544 333211 112356899999999998888776533221 1224556788999999774 44444
No 69
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=6.2e-06 Score=87.53 Aligned_cols=196 Identities=15% Similarity=0.032 Sum_probs=108.8
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQ 262 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 262 (524)
|.....++|.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+++.+...- |... ...+-....+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~~-----~~Cg~C~sCr~ 81 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKDG-----DCCNSCSVCES 81 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCCC-----CCCcccHHHHH
Confidence 3455679999999999999886542 346788999999999999999999764311 1100 00000001111
Q ss_pred HHHHHhCCCCcc---cCCchHHHHHHh--------ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEec-CChh
Q 044627 263 ILSQILGENIIK---TSIPPRYINKRL--------QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTT-RDKK 328 (524)
Q Consensus 263 ll~~l~~~~~~~---~~~~~~~l~~~L--------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTT-R~~~ 328 (524)
+.......-..+ .....+.+++.. ..++-++|+|+++.. .....|+..+....+.+.+|++| ....
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 110000000000 001112222111 123447999999653 44556665554334455555544 4333
Q ss_pred hhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh-HHHHHHHH
Q 044627 329 VLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS-LALNVLRS 390 (524)
Q Consensus 329 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~ 390 (524)
+... ......+++.+++.++....+...+...+.. -..+.+..+++.++|.+ .|+..+-.
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3322 2234578999999999998888765432211 12455778899999966 45544443
No 70
>PRK09087 hypothetical protein; Validated
Probab=98.45 E-value=5.4e-06 Score=78.50 Aligned_cols=141 Identities=11% Similarity=0.028 Sum_probs=86.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccC
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQM 289 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~ 289 (524)
.+.+.|+|.+|+|||+|++.+++... ..+++. ..+...+...+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----------~~~~~~~~~~~-------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----------NEIGSDAANAA-------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----------HHcchHHHHhh-------------------hc-
Confidence 45689999999999999999887642 235541 11111111111 11
Q ss_pred CeEEEecCCCChh-hHHHHhCCCCC-CCCCcEEEEecCCh---------hhhhhcCCCeEEEcCCCCHHHHHHHHHHhhh
Q 044627 290 KVCIILDNVDKFG-HSEYLTGGLSR-FGHGSRVIVTTRDK---------KVLDKYGVDYVYKVEGFNYRESLEIFCYYAF 358 (524)
Q Consensus 290 ~~LlVlDdv~~~~-~~~~l~~~~~~-~~~gs~IIiTTR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 358 (524)
-+|++||++... .-+.+...++. ...|..+|+|++.. .+...+.....+++++++.++-.+++.+.+-
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 278889995321 11222222211 12467799988742 2333334557899999999999999998874
Q ss_pred cCCCCCccHHHHHHHHHHHhcCChHHHHHH
Q 044627 359 RQNHCPGDLLVLSDNVVDYANGSSLALNVL 388 (524)
Q Consensus 359 ~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 388 (524)
...- .-.+++..-|++.+.|..-++..+
T Consensus 168 ~~~~--~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 168 DRQL--YVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HcCC--CCCHHHHHHHHHHhhhhHHHHHHH
Confidence 4321 122567788888888877776643
No 71
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.44 E-value=1.9e-06 Score=88.50 Aligned_cols=174 Identities=20% Similarity=0.277 Sum_probs=99.0
Q ss_pred CCCCccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccc
Q 044627 185 NSEDLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKR 253 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (524)
....+.|++..++++.+.+.. +-..++-|.|+|++|+|||+||+++++..... |+. .+
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-----~i~----v~-- 197 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-----FIR----VV-- 197 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-----EEE----ee--
Confidence 345789999999999887632 11235678999999999999999999976543 222 10
Q ss_pred cCHHHHHHHHHHHHhCCCCcccCCchHHHHHH-hccCCeEEEecCCCChh------------h----HHHHhCCCCCC--
Q 044627 254 VELEHLRDQILSQILGENIIKTSIPPRYINKR-LQQMKVCIILDNVDKFG------------H----SEYLTGGLSRF-- 314 (524)
Q Consensus 254 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~-L~~~~~LlVlDdv~~~~------------~----~~~l~~~~~~~-- 314 (524)
...+. ....+.. ......+.+. -...+.+|+||+++... . +..++..+...
T Consensus 198 --~~~l~----~~~~g~~----~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 198 --GSELV----QKFIGEG----ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred --hHHHh----Hhhccch----HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 01111 1111110 0011111121 23457899999997531 1 22233222211
Q ss_pred CCCcEEEEecCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh
Q 044627 315 GHGSRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 315 ~~gs~IIiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (524)
..+..||.||........ ......+++++.+.++-.++|..+........ + .....+++.+.|.-
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~--~~~~~la~~t~g~s 337 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-D--VDLEELAELTEGAS 337 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-c--CCHHHHHHHcCCCC
Confidence 135567777765433221 12356799999999999999987764332211 1 11355666676653
No 72
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=1.6e-05 Score=85.10 Aligned_cols=196 Identities=15% Similarity=0.005 Sum_probs=110.9
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQ 262 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 262 (524)
|.....+||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+....... + . ..+.......
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~-~-------pCg~C~~C~~ 78 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-A-T-------PCGVCESCVA 78 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-C-C-------cccccHHHHH
Confidence 3445679999999999999997642 345678999999999999999998764321000 0 0 0000000111
Q ss_pred HHHHHhCCCC--cc---cCCchHHHHH---H-----hccCCeEEEecCCCC--hhhHHHHhCCCCCCCCCcEEEEec-CC
Q 044627 263 ILSQILGENI--IK---TSIPPRYINK---R-----LQQMKVCIILDNVDK--FGHSEYLTGGLSRFGHGSRVIVTT-RD 326 (524)
Q Consensus 263 ll~~l~~~~~--~~---~~~~~~~l~~---~-----L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiTT-R~ 326 (524)
+...-..... .+ ....++.+++ . ..+++-++|+|+++. ....+.|+..+......+.+|++| ..
T Consensus 79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 1100000000 00 0011222211 1 123456889999963 445666666666555566655544 44
Q ss_pred hhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH-HHHHHHH
Q 044627 327 KKVLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVLRS 390 (524)
Q Consensus 327 ~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~~ 390 (524)
..+... ......+++.+++.++..+.+.+.+...+.. -..+.+..|++.++|.+- ++..+-.
T Consensus 159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444432 2235679999999999988887765433321 124556778888998774 4444433
No 73
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=9.2e-06 Score=87.27 Aligned_cols=191 Identities=13% Similarity=0.038 Sum_probs=112.2
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccce---eEeeeecccccccCHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGR---SFMANVREESKRVELEHL 259 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~---~wv~~~~~~~~~~~~~~l 259 (524)
|.....+||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+....... .-+. ..+....
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~-------~cg~c~~ 91 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID-------LCGVGEH 91 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc-------cCcccHH
Confidence 3455689999999999999997643 355788999999999999999999764332100 0000 0000001
Q ss_pred HHHHHHHHhCCCCcc------cCCchHHHHHH---h-----ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEe
Q 044627 260 RDQILSQILGENIIK------TSIPPRYINKR---L-----QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVT 323 (524)
Q Consensus 260 ~~~ll~~l~~~~~~~------~~~~~~~l~~~---L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiT 323 (524)
.+.+... ...+. ....++.+++. + ..++-++|+|+++.. ...+.|+..+....+.+.+|++
T Consensus 92 C~~i~~g---~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~ 168 (598)
T PRK09111 92 CQAIMEG---RHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFA 168 (598)
T ss_pred HHHHhcC---CCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEE
Confidence 1111110 00000 01122222222 1 234557999999644 3466666666554556666554
Q ss_pred c-CChhhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHH
Q 044627 324 T-RDKKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALN 386 (524)
Q Consensus 324 T-R~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 386 (524)
| ....+.... .....+++.+++.++....+.+.+-..+.. -..+.+..|++.++|.+.-+.
T Consensus 169 tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 169 TTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred eCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 4 444443222 234678999999999999988776433311 124567888999999886543
No 74
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.1e-05 Score=86.16 Aligned_cols=194 Identities=9% Similarity=-0.006 Sum_probs=112.0
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQI 263 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 263 (524)
....++||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+....... ....+.....+.+
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~---------~~pCg~C~sC~~i 82 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT---------GEPCNTCEQCRKV 82 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCC---------CCCCcccHHHHHH
Confidence 445678999988888888887532 256788999999999999999999764321000 0000000001111
Q ss_pred HHHHhCCCCcc------cCCchHHHH---HH-----hccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCC-
Q 044627 264 LSQILGENIIK------TSIPPRYIN---KR-----LQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRD- 326 (524)
Q Consensus 264 l~~l~~~~~~~------~~~~~~~l~---~~-----L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~- 326 (524)
... ...+. ....++.++ +. ..+++-++|+|+++.. +..+.|+..+........+|++|.+
T Consensus 83 ~~g---~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~ 159 (624)
T PRK14959 83 TQG---MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEP 159 (624)
T ss_pred hcC---CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCCh
Confidence 000 00000 001111111 11 1345668999999654 4456666665543345556665544
Q ss_pred hhhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh-HHHHHHHHHh
Q 044627 327 KKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS-LALNVLRSSF 392 (524)
Q Consensus 327 ~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~~l 392 (524)
..+.... .....+++.+++.++..+.+...+..... .-..+.+..|++.++|.+ .|+..+...+
T Consensus 160 ~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 160 HKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3333221 22357899999999999888876543321 122456788999999865 6777776544
No 75
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.8e-05 Score=81.06 Aligned_cols=181 Identities=13% Similarity=0.091 Sum_probs=106.2
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc--------ccceeEeeeeccccccc
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ--------FEGRSFMANVREESKRV 254 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~wv~~~~~~~~~~ 254 (524)
|..-+.++|.+..++.+.+.+..+. -.+.+.++|++|+|||++|..+++.+... |...++-. . .....
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~-~~~~~ 88 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--D-AASNN 88 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--c-cccCC
Confidence 3445678999999999999997542 35688899999999999999998876431 11111110 0 11111
Q ss_pred CHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEec-CChhhhh
Q 044627 255 ELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTT-RDKKVLD 331 (524)
Q Consensus 255 ~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTT-R~~~~~~ 331 (524)
+...+ ..+...+... -..+++-++|+|+++.. ..++.+...+......+.+|++| ....+..
T Consensus 89 ~~~~i-~~l~~~~~~~--------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 89 SVDDI-RNLIDQVRIP--------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred CHHHH-HHHHHHHhhc--------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 11111 1222211100 01234558999999644 33555654444333455555555 3333322
Q ss_pred h-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHH
Q 044627 332 K-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (524)
Q Consensus 332 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 384 (524)
. ......+++.+++.++....+...+...+.. -..+.+..+++.++|.+-.
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRD 205 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHH
Confidence 2 1234578999999999988888766443321 1246778888899986653
No 76
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=2.7e-05 Score=81.99 Aligned_cols=176 Identities=11% Similarity=0.018 Sum_probs=105.8
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc---------------------ccce
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ---------------------FEGR 241 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~ 241 (524)
|.....++|-+..++.|.+.+..+. -...+.++|+.|+||||+|+.++..+... +...
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 3445679999999999999997643 35567889999999999999999875421 0111
Q ss_pred eEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHh-----ccCCeEEEecCCCCh--hhHHHHhCCCCCC
Q 044627 242 SFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRL-----QQMKVCIILDNVDKF--GHSEYLTGGLSRF 314 (524)
Q Consensus 242 ~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~ 314 (524)
..++ .+...+... .+.+.+.. .+++-++|+|+++.. +..+.|+..+...
T Consensus 91 ~eid----aas~~gvd~--------------------ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep 146 (486)
T PRK14953 91 IEID----AASNRGIDD--------------------IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP 146 (486)
T ss_pred EEEe----CccCCCHHH--------------------HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC
Confidence 1111 000011111 11122221 245669999999644 3455565555544
Q ss_pred CCCcEEEEec-CChhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHH
Q 044627 315 GHGSRVIVTT-RDKKVLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (524)
Q Consensus 315 ~~gs~IIiTT-R~~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 385 (524)
.+...+|++| +...+... ......+.+.+++.++....+...+-..+. .-..+.+..+++.++|.+..+
T Consensus 147 p~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 147 PPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDA 217 (486)
T ss_pred CCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 4455555544 43333322 123457899999999998888876543321 122456778888999977544
No 77
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.2e-05 Score=82.86 Aligned_cols=194 Identities=12% Similarity=0.026 Sum_probs=108.6
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc--ccceeEeeeecccccccCHHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ--FEGRSFMANVREESKRVELEHLR 260 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~l~ 260 (524)
|.....++|.+..++.|.+++..+. -...+.++|++|+||||+|..+++.+... +...-|..... ...+.....
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~---~~c~~c~~c 87 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT---EPCGECESC 87 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC---CCCCCCHHH
Confidence 3455679999999999999887543 24568899999999999999999976432 10000110000 000000001
Q ss_pred HHHHHHHhCCCCcc------cCCchHHH---HHHh-----ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEec
Q 044627 261 DQILSQILGENIIK------TSIPPRYI---NKRL-----QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTT 324 (524)
Q Consensus 261 ~~ll~~l~~~~~~~------~~~~~~~l---~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTT 324 (524)
+.+... ...+. .....+.+ .+.+ .+.+-++|+|+++.. ..++.++..+....+.+.+|++|
T Consensus 88 ~~~~~~---~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 88 RDFDAG---TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred HHHhcC---CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 111100 00000 00111222 2222 234568899999754 34666666665545566666555
Q ss_pred -CChhhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHH
Q 044627 325 -RDKKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (524)
Q Consensus 325 -R~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 385 (524)
+...+.... .....+++.+++.++..+.+...+-..+. .-..+.+..+++.++|.+--+
T Consensus 165 ~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 165 TELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred CChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 433333221 12346889999999998888776533221 122567889999999977533
No 78
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.31 E-value=9.9e-06 Score=78.77 Aligned_cols=153 Identities=12% Similarity=0.123 Sum_probs=82.1
Q ss_pred CccchhhhHHhhhhhhhc-------------CCCCceEEEeeccccchHHHHHHHHHhhhcccc--cceeEeeeeccccc
Q 044627 188 DLVGVDSHIQRINSLLCI-------------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQF--EGRSFMANVREESK 252 (524)
Q Consensus 188 ~~vGR~~el~~l~~~L~~-------------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~wv~~~~~~~~ 252 (524)
.++|.+...++|...... ..+....+.++|++|+||||+|+.+++.+...- ....++. ..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~----~~- 81 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE----VE- 81 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE----ec-
Confidence 377877777666533211 112356678999999999999999988653211 1112222 11
Q ss_pred ccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhcc-CCeEEEecCCCCh----------hhHHHHhCCCCCCCCCcEEE
Q 044627 253 RVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQ-MKVCIILDNVDKF----------GHSEYLTGGLSRFGHGSRVI 321 (524)
Q Consensus 253 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~II 321 (524)
...+ .....+. ....+.+.+.. ..-+|++|+++.. +.++.++...........+|
T Consensus 82 ---~~~l----~~~~~g~-------~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vi 147 (261)
T TIGR02881 82 ---RADL----VGEYIGH-------TAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLI 147 (261)
T ss_pred ---HHHh----hhhhccc-------hHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEE
Confidence 0111 1111111 11122222221 2458899999642 24555665554333444555
Q ss_pred EecCChhhhh--------hcCCCeEEEcCCCCHHHHHHHHHHhhhc
Q 044627 322 VTTRDKKVLD--------KYGVDYVYKVEGFNYRESLEIFCYYAFR 359 (524)
Q Consensus 322 iTTR~~~~~~--------~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 359 (524)
+++.....-. .-.....+.+++++.++-.+++.+.+..
T Consensus 148 la~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred ecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 6554322100 0112356899999999999999877643
No 79
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.30 E-value=2.1e-05 Score=81.66 Aligned_cols=159 Identities=13% Similarity=0.167 Sum_probs=94.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhccccc--ceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFE--GRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQ 287 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~ 287 (524)
...+.|+|.+|+|||+|++++++.+....+ .++++. ...+...+...+... ....+.+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~-------~~~~~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN-------KMEEFKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC-------CHHHHHHHHH
Confidence 456889999999999999999998766543 344444 223334444443321 1233444444
Q ss_pred cCCeEEEecCCCChh----hHHHHhCCCCCC-CCCcEEEEecCC-hhhh--------hhcCCCeEEEcCCCCHHHHHHHH
Q 044627 288 QMKVCIILDNVDKFG----HSEYLTGGLSRF-GHGSRVIVTTRD-KKVL--------DKYGVDYVYKVEGFNYRESLEIF 353 (524)
Q Consensus 288 ~~~~LlVlDdv~~~~----~~~~l~~~~~~~-~~gs~IIiTTR~-~~~~--------~~~~~~~~~~l~~L~~~ea~~L~ 353 (524)
+ .-+|||||++... ..+.+...+... ..+..+|+||.. +..+ ..+.....+.+++.+.++-.+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 3 3488899996321 112222221111 235568887764 2221 11222346899999999999999
Q ss_pred HHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHH
Q 044627 354 CYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVL 388 (524)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 388 (524)
.+.+...... -.++.+..|++.+.|..-.|.-+
T Consensus 278 ~~~~~~~~~~--l~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 278 QKKAEEEGLE--LPDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHH
Confidence 8887543221 22567788888888877655433
No 80
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.30 E-value=3e-05 Score=80.90 Aligned_cols=159 Identities=11% Similarity=0.121 Sum_probs=95.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhccccc--ceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFE--GRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQ 287 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~ 287 (524)
...+.|+|.+|+|||+|+.++++.+...++ .++|+. ...+...+...+... ....+++.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~-------~~~~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG-------KLNEFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc-------cHHHHHHHHH
Confidence 456899999999999999999998766543 345554 234445554444321 1233444444
Q ss_pred cCCeEEEecCCCChh---h-HHHHhCCCCC-CCCCcEEEEecC-Chhhhh--------hcCCCeEEEcCCCCHHHHHHHH
Q 044627 288 QMKVCIILDNVDKFG---H-SEYLTGGLSR-FGHGSRVIVTTR-DKKVLD--------KYGVDYVYKVEGFNYRESLEIF 353 (524)
Q Consensus 288 ~~~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~IIiTTR-~~~~~~--------~~~~~~~~~l~~L~~~ea~~L~ 353 (524)
...-+|++||+.... . -+.+...+.. ...|..||+||. .+.-+. .+...-.+++++.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 456689999996321 1 1122211110 113557888874 332221 1223457799999999999999
Q ss_pred HHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHH
Q 044627 354 CYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNV 387 (524)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 387 (524)
.+.+...... -.++++..|++.+.|.--.|.-
T Consensus 273 ~~~~~~~~~~--l~~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 273 RKMLEIEHGE--LPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHHhcCCC--CCHHHHHHHHhccccCHHHHHH
Confidence 8876432211 2256788888888887555443
No 81
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=3.4e-05 Score=83.51 Aligned_cols=193 Identities=13% Similarity=0.038 Sum_probs=110.5
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQI 263 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 263 (524)
.....+||-+..++.|..++..+. -...+.++|..|+||||+|+.+++.+.......-+ ...+.....+.+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~--------~~c~~c~~c~~i 83 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG--------RPCGTCEMCRAI 83 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCccCHHHHHH
Confidence 445679999999999998887543 34567899999999999999999876432110000 000111112222
Q ss_pred HHHHhCCCCcc---cCCchHHH---HHHh-----ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCC-hhh
Q 044627 264 LSQILGENIIK---TSIPPRYI---NKRL-----QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRD-KKV 329 (524)
Q Consensus 264 l~~l~~~~~~~---~~~~~~~l---~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~-~~~ 329 (524)
..........+ .....+.+ .+.+ ..++-++|+|+++.. +..+.|+..+......+.+|++|.+ ..+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 11110000000 00111111 1111 234668999999644 4466666655544456666665543 333
Q ss_pred hhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHH
Q 044627 330 LDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNV 387 (524)
Q Consensus 330 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 387 (524)
... ......+.+..++..+....+...+...+.. -..+.+..|++.++|.+..+..
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 322 1223568899999999988888776443321 1245678999999998865443
No 82
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.29 E-value=1.3e-05 Score=80.39 Aligned_cols=150 Identities=16% Similarity=0.209 Sum_probs=87.3
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQ 262 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 262 (524)
|.....++|.+...+.+..++..+. -..++.++|++|+|||++|+.+++..... ...+. .+. .....+...
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~----~~~-~~~~~i~~~ 87 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVN----GSD-CRIDFVRNR 87 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEec----cCc-ccHHHHHHH
Confidence 3455779999999999999987532 35677789999999999999999876432 22333 111 111111111
Q ss_pred HHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh---hhHHHHhCCCCCCCCCcEEEEecCChhhh-hh-cCCCe
Q 044627 263 ILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF---GHSEYLTGGLSRFGHGSRVIVTTRDKKVL-DK-YGVDY 337 (524)
Q Consensus 263 ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IIiTTR~~~~~-~~-~~~~~ 337 (524)
+.. .... ..+...+-++|+|+++.. +..+.+...+.....++++|+||...... .. .....
T Consensus 88 l~~-~~~~-------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 88 LTR-FAST-------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHH-HHHh-------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 111 1000 001134568999999754 22233333233334677888888654211 11 11234
Q ss_pred EEEcCCCCHHHHHHHHHH
Q 044627 338 VYKVEGFNYRESLEIFCY 355 (524)
Q Consensus 338 ~~~l~~L~~~ea~~L~~~ 355 (524)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 677878888887766553
No 83
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=3e-05 Score=84.08 Aligned_cols=189 Identities=14% Similarity=0.071 Sum_probs=108.8
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQ 262 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 262 (524)
|.....++|-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-..-....+-. ++ . ...
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p-C~---------~-C~~ 81 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP-CQ---------E-CIE 81 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc-hh---------H-HHH
Confidence 3445679999999999999997542 3567789999999999999999987533211000000 00 0 000
Q ss_pred HHHHHhCCCCcc------cCCchH---HHHHHh-----ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEE-EecC
Q 044627 263 ILSQILGENIIK------TSIPPR---YINKRL-----QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVI-VTTR 325 (524)
Q Consensus 263 ll~~l~~~~~~~------~~~~~~---~l~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~II-iTTR 325 (524)
. . +...+. ...... .+.+.+ .+++-++|+|+++.. .....|+..+......+.+| +|++
T Consensus 82 ~---~-~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte 157 (725)
T PRK07133 82 N---V-NNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTE 157 (725)
T ss_pred h---h-cCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCC
Confidence 0 0 000000 001111 122222 245668999999643 45666666555444455544 4544
Q ss_pred Chhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh-HHHHHHH
Q 044627 326 DKKVLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS-LALNVLR 389 (524)
Q Consensus 326 ~~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~ 389 (524)
...+... ......+++.+++.++..+.+...+-..+. ....+.+..+++.++|.+ .|+..+-
T Consensus 158 ~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 158 VHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4444332 223468999999999999888775533221 112455778899998866 4544443
No 84
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.28 E-value=1e-05 Score=84.73 Aligned_cols=160 Identities=21% Similarity=0.276 Sum_probs=90.6
Q ss_pred CCCccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccc-----cceeEeeeecc
Q 044627 186 SEDLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQF-----EGRSFMANVRE 249 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~wv~~~~~ 249 (524)
-..+.|.+..++++.+.+.. +-...+-+.|+|++|+|||++|+++++.+...+ ...+|+.
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~---- 256 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN---- 256 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe----
Confidence 45678899999998887642 112356789999999999999999999876542 2234443
Q ss_pred cccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHH-hccCCeEEEecCCCChh---------h-----HHHHhCCCCCC
Q 044627 250 ESKRVELEHLRDQILSQILGENIIKTSIPPRYINKR-LQQMKVCIILDNVDKFG---------H-----SEYLTGGLSRF 314 (524)
Q Consensus 250 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~-L~~~~~LlVlDdv~~~~---------~-----~~~l~~~~~~~ 314 (524)
.... .+ +....+.............++. ..+++++|+||+++..- + +..|+..+...
T Consensus 257 v~~~----eL----l~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 257 IKGP----EL----LNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred ccch----hh----cccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 1110 00 0000000000000011111211 13468999999996321 1 22344333322
Q ss_pred C--CCcEEEEecCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhh
Q 044627 315 G--HGSRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYA 357 (524)
Q Consensus 315 ~--~gs~IIiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~ 357 (524)
. .+..||.||..+..+.. ......++++..+.++..++|..+.
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 2 34455666654433221 1245678999999999999999876
No 85
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.27 E-value=1.5e-06 Score=74.86 Aligned_cols=88 Identities=20% Similarity=0.375 Sum_probs=47.3
Q ss_pred ccEEecCcccccCCchHHHHHHHHHhC-------CCce----------EecC-CcCCCCcchHHHHHhhhhcceEEEEee
Q 044627 13 YDVFLSFRGEDTRNNFTSHLFAAFCRE-------KIKA----------FIDE-QLKKGDDISSALLNAIEESKISVIIFS 74 (524)
Q Consensus 13 ~dvFis~~~~D~~~~~~~~l~~~L~~~-------g~~~----------~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S 74 (524)
|.|||||++.|.. .....|.+.+... .+.. +.+. +......|...|.+.|.+|+++||++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999999954 2677777777763 2211 1111 222345789999999999999999999
Q ss_pred cCccCchhhHHHHHHHHHhHhhcCCeeEeeE
Q 044627 75 KGYASSTWCLEELVKILECKKRKGQTVIPVF 105 (524)
Q Consensus 75 ~~y~~s~wc~~El~~~~~~~~~~~~~v~Pi~ 105 (524)
++...|.|+.+|+..++. .+..|+-|-
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEE
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEE
Confidence 999999999999998886 334666664
No 86
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.9e-05 Score=83.60 Aligned_cols=196 Identities=13% Similarity=0.045 Sum_probs=109.6
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc--ccceeEeeeecccccccCHHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ--FEGRSFMANVREESKRVELEHLR 260 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~l~ 260 (524)
|.....+||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+... .....|...... .-+.....
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~---~Cg~C~sC 87 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE---PCGECESC 87 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC---CCccCHHH
Confidence 3445779999999999999887542 24568899999999999999999976432 110111110000 00000011
Q ss_pred HHHHHHHhCCCCcc------cCCchHHHHH---Hh-----ccCCeEEEecCCCChh--hHHHHhCCCCCCCCCcEEEEec
Q 044627 261 DQILSQILGENIIK------TSIPPRYINK---RL-----QQMKVCIILDNVDKFG--HSEYLTGGLSRFGHGSRVIVTT 324 (524)
Q Consensus 261 ~~ll~~l~~~~~~~------~~~~~~~l~~---~L-----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTT 324 (524)
+.+.. +...+. .....+.+++ .+ .+.+-++|+|+++... ..+.|+..+....+.+.+|++|
T Consensus 88 ~~~~~---g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 88 RDFDA---GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHHhc---cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 11100 000000 0011122221 11 2345588999997543 4666666665444555555444
Q ss_pred -CChhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH-HHHH
Q 044627 325 -RDKKVLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNV 387 (524)
Q Consensus 325 -R~~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~ 387 (524)
+...+... ......+++.+++.++....+.+.+...+. .-..+.+..|++.++|..- ++..
T Consensus 165 ~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 165 TELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred CChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHH
Confidence 43444332 234568999999999988888765533221 1125567889999999654 4443
No 87
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.27 E-value=1.2e-05 Score=90.30 Aligned_cols=179 Identities=15% Similarity=0.094 Sum_probs=96.5
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccc------cceeEeeeecccc-cccCH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQF------EGRSFMANVREES-KRVEL 256 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~wv~~~~~~~-~~~~~ 256 (524)
..-+.+|||+.++.++...|.... ..-+.|+|.+|+||||||..+++++.... ...+|..+..... .....
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ 261 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVK 261 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccc
Confidence 445679999999999999887643 33456999999999999999999874331 1223322221110 00000
Q ss_pred HHHHHHHHHHHhCCCCcccCCchHHHHHHh-ccCCeEEEecCCCCh-------hhHH---HHhCCCCCCCCCcEEEEecC
Q 044627 257 EHLRDQILSQILGENIIKTSIPPRYINKRL-QQMKVCIILDNVDKF-------GHSE---YLTGGLSRFGHGSRVIVTTR 325 (524)
Q Consensus 257 ~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~-------~~~~---~l~~~~~~~~~gs~IIiTTR 325 (524)
..+... +...+.+.- .+.+++|++|++... .+.+ .|.+.+. ....++|-||.
T Consensus 262 ge~e~~---------------lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT 324 (852)
T TIGR03345 262 GEFENR---------------LKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATT 324 (852)
T ss_pred hHHHHH---------------HHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecC
Confidence 011111 111111111 246899999999533 1122 2444433 12345565555
Q ss_pred Chhhhhh-------cCCCeEEEcCCCCHHHHHHHHHHhhhc--CCCCCccHHHHHHHHHHHhcCC
Q 044627 326 DKKVLDK-------YGVDYVYKVEGFNYRESLEIFCYYAFR--QNHCPGDLLVLSDNVVDYANGS 381 (524)
Q Consensus 326 ~~~~~~~-------~~~~~~~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~ 381 (524)
....... ......+.+++++.++..+++...... ....-.-..+....+++.+.++
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 4322111 112358999999999999997544311 1111111234455566666543
No 88
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.25 E-value=2.9e-05 Score=81.68 Aligned_cols=178 Identities=10% Similarity=0.120 Sum_probs=104.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccc--eeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEG--RSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQ 287 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~ 287 (524)
...+.|+|.+|+|||+|++++++.+..+++. ++|+. ...+...+...+... ....+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~-------~~~~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----------SEKFTNDFVNALRNN-------TMEEFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHcC-------cHHHHHHHHh
Confidence 4568899999999999999999988776543 44444 223333444443221 1233444444
Q ss_pred cCCeEEEecCCCChh----hHHHHhCCCCC-CCCCcEEEEecCChh-h--------hhhcCCCeEEEcCCCCHHHHHHHH
Q 044627 288 QMKVCIILDNVDKFG----HSEYLTGGLSR-FGHGSRVIVTTRDKK-V--------LDKYGVDYVYKVEGFNYRESLEIF 353 (524)
Q Consensus 288 ~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IIiTTR~~~-~--------~~~~~~~~~~~l~~L~~~ea~~L~ 353 (524)
+ .-+|||||++... ..+.+...+.. ...|..||+||.... . ...+.....+++++++.++-.+++
T Consensus 211 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 S-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred c-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 3 4488999995321 11222221111 113456888776431 1 222233457899999999999999
Q ss_pred HHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHh------cC--CCHHHHHHHHhcC
Q 044627 354 CYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSF------YR--KSKQHWENALHNP 407 (524)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l------~~--~~~~~w~~~l~~l 407 (524)
.+.+.... ..-.++.+.-|++.+.|..-.|.-+-..| .+ -+.+..+.++..+
T Consensus 290 ~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 290 KKKAEEEG--IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHcC--CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 98875422 11235678888888888776544332222 12 2556666666654
No 89
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=5.6e-05 Score=79.77 Aligned_cols=180 Identities=14% Similarity=0.051 Sum_probs=108.2
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc-ccc--------------------cee
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS-QFE--------------------GRS 242 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~--------------------~~~ 242 (524)
..-..+||-+...+.|...+..+. -.+++.++|+.|+||||+|+.+++.+-. ... .+.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 445679999999999999987543 3557789999999999999999987532 110 011
Q ss_pred EeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEE
Q 044627 243 FMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRV 320 (524)
Q Consensus 243 wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~I 320 (524)
.+. .+...++..+... ....... -..+++-++|+|+++.. +..+.|+..+....+.+++
T Consensus 90 eld----aas~~gId~IRel-ie~~~~~--------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~F 150 (535)
T PRK08451 90 EMD----AASNRGIDDIREL-IEQTKYK--------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKF 150 (535)
T ss_pred Eec----cccccCHHHHHHH-HHHHhhC--------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEE
Confidence 111 1111112221111 1110000 00134568899999644 4456666665554566777
Q ss_pred EEecCCh-hhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHH
Q 044627 321 IVTTRDK-KVLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (524)
Q Consensus 321 IiTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 385 (524)
|++|.+. .+... ......+++.+++.++..+.+...+...+.. -..+.+..|++.++|.+--+
T Consensus 151 IL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 151 ILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDT 215 (535)
T ss_pred EEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHH
Confidence 7666553 22211 1224678999999999998887665433321 12456788999999988443
No 90
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.23 E-value=1.5e-05 Score=88.64 Aligned_cols=155 Identities=16% Similarity=0.182 Sum_probs=86.7
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc-----c-cceeEeeeecccccccCHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ-----F-EGRSFMANVREESKRVELE 257 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-----f-~~~~wv~~~~~~~~~~~~~ 257 (524)
..-+.++||+.+++.+...|.... ..-+.++|++|+|||++|+.+++++... + ...+|..+. .
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~---------~ 247 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM---------G 247 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH---------H
Confidence 344579999999999999887643 3356799999999999999999986432 1 223343311 1
Q ss_pred HHHHHHHHHHhCCCCcccCCchHHHHHHh-ccCCeEEEecCCCCh-----------hhHHHHhCCCCCCCCCcEEEEecC
Q 044627 258 HLRDQILSQILGENIIKTSIPPRYINKRL-QQMKVCIILDNVDKF-----------GHSEYLTGGLSRFGHGSRVIVTTR 325 (524)
Q Consensus 258 ~l~~~ll~~l~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IIiTTR 325 (524)
.+...- ...+ + .+.....+.+.+ ...+.+|++|+++.. +..+.+.+.+.. ...++|-+|.
T Consensus 248 ~l~a~~--~~~g---~-~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt 319 (731)
T TIGR02639 248 SLLAGT--KYRG---D-FEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTT 319 (731)
T ss_pred HHhhhc--cccc---h-HHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecC
Confidence 111000 0000 0 001111222222 245889999999622 112334444331 1234454444
Q ss_pred Chhhhhh-------cCCCeEEEcCCCCHHHHHHHHHHhh
Q 044627 326 DKKVLDK-------YGVDYVYKVEGFNYRESLEIFCYYA 357 (524)
Q Consensus 326 ~~~~~~~-------~~~~~~~~l~~L~~~ea~~L~~~~~ 357 (524)
....... ......+.++.++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 3221110 0122478999999999999998654
No 91
>PRK06620 hypothetical protein; Validated
Probab=98.23 E-value=2.2e-05 Score=73.75 Aligned_cols=134 Identities=7% Similarity=-0.056 Sum_probs=79.4
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCC
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMK 290 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~ 290 (524)
+.+.|||++|+|||+|++.+++.... .++.... .. . +..+ ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~~------~~----~----------------------~~~~-~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDIF------FN----E----------------------EILE-KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchhh------hc----h----------------------hHHh-cC
Confidence 56899999999999999998775432 2222000 00 0 0011 23
Q ss_pred eEEEecCCCChhh--HHHHhCCCCCCCCCcEEEEecCChhh-------hhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCC
Q 044627 291 VCIILDNVDKFGH--SEYLTGGLSRFGHGSRVIVTTRDKKV-------LDKYGVDYVYKVEGFNYRESLEIFCYYAFRQN 361 (524)
Q Consensus 291 ~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~IIiTTR~~~~-------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~ 361 (524)
-+|++||++...+ +-.+...+. ..|..||+|++.+.. ...+...-.+++++++.++-..++.+.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 4788999974432 212211111 246789999875322 22223345799999999998888877764322
Q ss_pred CCCccHHHHHHHHHHHhcCChHHHH
Q 044627 362 HCPGDLLVLSDNVVDYANGSSLALN 386 (524)
Q Consensus 362 ~~~~~~~~~~~~i~~~~~g~PLal~ 386 (524)
-.-.+++++-|++.+.|.--.+.
T Consensus 165 --l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 165 --VTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred --CCCCHHHHHHHHHHccCCHHHHH
Confidence 11225667778887777655543
No 92
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=7.4e-05 Score=78.14 Aligned_cols=183 Identities=15% Similarity=0.112 Sum_probs=107.9
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccc-----c-----------------ce
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQF-----E-----------------GR 241 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-----~-----------------~~ 241 (524)
..-+.++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+...- . ..
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 455789999999999999997542 246688999999999999999998753320 0 00
Q ss_pred eEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcE
Q 044627 242 SFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSR 319 (524)
Q Consensus 242 ~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 319 (524)
..+. .....++..+. .+...+. ..-..+.+-++|+|+++.. +..+.|+..+......+.
T Consensus 93 ~~i~----g~~~~gid~ir-~i~~~l~--------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 93 LEID----GASHRGIEDIR-QINETVL--------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred EEee----ccccCCHHHHH-HHHHHHH--------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 1111 00001111111 1111100 0001245678999999644 345556655554445666
Q ss_pred EEEecCC-hhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH-HHHHH
Q 044627 320 VIVTTRD-KKVLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVL 388 (524)
Q Consensus 320 IIiTTR~-~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 388 (524)
+|++|.+ ..+... ......+++.+++.++..+.+...+-..+. .-..+.+..|++.++|.+- |+..+
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666543 333222 123457899999999998888776543221 1224567889999999764 44443
No 93
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=8.1e-05 Score=80.61 Aligned_cols=193 Identities=12% Similarity=0.022 Sum_probs=108.5
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQI 263 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 263 (524)
.....++|.+...+.|..++..+. -.+.+.++|..|+||||+|+.+++.+........-.. ..+.....+.+
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~-------~Cg~C~~C~~i 84 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE-------PCGKCELCRAI 84 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC-------CCcccHHHHHH
Confidence 445679999999999999987643 2457789999999999999999997644211000000 00001111111
Q ss_pred HHHHhCCCCcc---cCCchHHHHHHh--------ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCC-hhh
Q 044627 264 LSQILGENIIK---TSIPPRYINKRL--------QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRD-KKV 329 (524)
Q Consensus 264 l~~l~~~~~~~---~~~~~~~l~~~L--------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~-~~~ 329 (524)
..........+ .....+.+++.+ .+++-++|+|+++.. +....|+..+......+.+|++|.+ ..+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 11110000000 111222222221 234568899999754 3466666665544445555544443 333
Q ss_pred hhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHH
Q 044627 330 LDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALN 386 (524)
Q Consensus 330 ~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 386 (524)
.... .....+++..++.++....+...+...+.. -..+.+..|++.++|.+..+.
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 3221 234678889999998888777665432211 113557889999999875443
No 94
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=0.00011 Score=78.81 Aligned_cols=187 Identities=10% Similarity=-0.024 Sum_probs=109.7
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQ 262 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 262 (524)
|..-..++|-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-..-.....-+ +.....+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC---------~~C~~C~~ 81 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPC---------GECSSCKS 81 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCC---------ccchHHHH
Confidence 3455679999999999999997642 3567889999999999999999997643200000000 00000000
Q ss_pred HHHHHhCCCCcc------cCCchHHHHHH--------hccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCC
Q 044627 263 ILSQILGENIIK------TSIPPRYINKR--------LQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRD 326 (524)
Q Consensus 263 ll~~l~~~~~~~------~~~~~~~l~~~--------L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~ 326 (524)
+... ...+. .....+.+++. ..+++-++|+|+++.. ...+.|+..+....+.+.+|++|.+
T Consensus 82 i~~~---~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 82 IDND---NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred HHcC---CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 0000 00000 00112222211 1345668999999644 4467777776655566666666544
Q ss_pred -hhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHH
Q 044627 327 -KKVLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (524)
Q Consensus 327 -~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 384 (524)
..+... ......+++.+++.++..+.+...+...+.. -..+.+..|++.++|.+-.
T Consensus 159 ~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~ 216 (563)
T PRK06647 159 VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRD 216 (563)
T ss_pred hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 333322 1234568999999999988888766433321 2246677888899997743
No 95
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.18 E-value=1.6e-05 Score=81.44 Aligned_cols=178 Identities=20% Similarity=0.205 Sum_probs=99.8
Q ss_pred CCCCCCccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccc
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREES 251 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~ 251 (524)
...-.++.|.+...++|.+.+.. +-...+-+.|+|++|+|||+||+++++.....|- .+. .
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~----~- 212 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV----G- 212 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe----h-
Confidence 33445688999999988876642 1124678999999999999999999997654431 111 0
Q ss_pred cccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh----------------hHHHHhCCCCCC-
Q 044627 252 KRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG----------------HSEYLTGGLSRF- 314 (524)
Q Consensus 252 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 314 (524)
..+ .....+... ......+.......+.+|+||+++... .+..++..+..+
T Consensus 213 -----s~l----~~k~~ge~~---~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 -----SEF----VQKYLGEGP---RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred -----HHH----HHHhcchhH---HHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 111 111111100 001111222234568999999986321 122233222211
Q ss_pred -CCCcEEEEecCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH
Q 044627 315 -GHGSRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL 383 (524)
Q Consensus 315 -~~gs~IIiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (524)
..+..||+||........ ......++++..+.++..++|..+........ + -...++++.+.|+.-
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-d--vd~~~la~~t~g~sg 352 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-E--VDLEDFVSRPEKISA 352 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-c--cCHHHHHHHcCCCCH
Confidence 235678888875543322 12456789999999998888876653322111 1 114566677766643
No 96
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.17 E-value=3.1e-05 Score=84.11 Aligned_cols=204 Identities=15% Similarity=0.099 Sum_probs=104.7
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc--cc---cceeEeeeecccccccCHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS--QF---EGRSFMANVREESKRVELE 257 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~--~f---~~~~wv~~~~~~~~~~~~~ 257 (524)
|...+.++|++..++.+.+.+... ....+.|+|++|+||||||+.+++.... .+ ...-|+..-. .....+..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~-~~l~~d~~ 226 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDG-TTLRWDPR 226 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEec-hhccCCHH
Confidence 344567999999999988777543 3457899999999999999998875421 11 1223433100 00011111
Q ss_pred HHHHHHH---------------HHHhCCCC-------------------cccCCchHHHHHHhccCCeEEEecCCCCh--
Q 044627 258 HLRDQIL---------------SQILGENI-------------------IKTSIPPRYINKRLQQMKVCIILDNVDKF-- 301 (524)
Q Consensus 258 ~l~~~ll---------------~~l~~~~~-------------------~~~~~~~~~l~~~L~~~~~LlVlDdv~~~-- 301 (524)
.+...++ ...+.... .........+.+.+.+++++++-|+.|..
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 1111111 11010000 00111234444555555555554444322
Q ss_pred hhHHHHhCCCCCCCCCcEEEE--ecCChhhhh-hc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHH
Q 044627 302 GHSEYLTGGLSRFGHGSRVIV--TTRDKKVLD-KY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDY 377 (524)
Q Consensus 302 ~~~~~l~~~~~~~~~gs~IIi--TTR~~~~~~-~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~ 377 (524)
..++.+...+....+...+++ ||++..... .. .....+.+.+++.++..+++.+.+...... -..+..+.|.++
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~--ls~eal~~L~~y 384 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH--LAAGVEELIARY 384 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHC
Confidence 123333333332233334454 566543211 11 123467899999999999999876432211 113455666666
Q ss_pred hcCChHHHHHHHHH
Q 044627 378 ANGSSLALNVLRSS 391 (524)
Q Consensus 378 ~~g~PLal~~~~~~ 391 (524)
+..-+-++..++..
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 65557777766544
No 97
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=0.00017 Score=71.80 Aligned_cols=191 Identities=10% Similarity=0.045 Sum_probs=109.3
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc---------------cccceeEeeeecccc
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS---------------QFEGRSFMANVREES 251 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~---------------~f~~~~wv~~~~~~~ 251 (524)
..++|.+...+.+.+.+..+. -.+...++|+.|+||+++|..+++.+-. .++...|+.......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 468999999999999997642 2578899999999999999999886422 234445554210000
Q ss_pred cccCHHHHHHHHHHHHh---CCCCcccCCchHHHHHHhc-----cCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEE
Q 044627 252 KRVELEHLRDQILSQIL---GENIIKTSIPPRYINKRLQ-----QMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVI 321 (524)
Q Consensus 252 ~~~~~~~l~~~ll~~l~---~~~~~~~~~~~~~l~~~L~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~II 321 (524)
. .... ...+...+ .....+.-+-++.+.+.+. +.+-++|+|+++.. .....|+..+...+ .+.+|
T Consensus 83 g-~~~~---~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 83 G-KLIT---ASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred c-cccc---hhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 0 0000 00000111 0000111111223333333 34668899999654 34555655554444 34455
Q ss_pred Eec-CChhhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHH
Q 044627 322 VTT-RDKKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVL 388 (524)
Q Consensus 322 iTT-R~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 388 (524)
++| ....++... .-...+++.+++.++..+.+.+..... . .......++..++|.|.....+
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~---~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE--I---LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--c---chhHHHHHHHHcCCCHHHHHHH
Confidence 444 444444332 235689999999999999998764211 1 1112367889999999765443
No 98
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=0.00011 Score=78.80 Aligned_cols=189 Identities=14% Similarity=0.053 Sum_probs=106.0
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQ 262 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 262 (524)
|.....++|.+...+.|.+.+..+. -.+.+.++|+.|+|||++|+.+++.+-..-... ..+.+.......
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~---------~~pC~~C~~C~~ 81 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD---------GEPCNECEICKA 81 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCccHHHHH
Confidence 4456789999999999999998643 356778899999999999999998653211000 000000001111
Q ss_pred HHHHHhCCCCcc---cCCchHHHHH---Hh-----ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEE-ecCChh
Q 044627 263 ILSQILGENIIK---TSIPPRYINK---RL-----QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIV-TTRDKK 328 (524)
Q Consensus 263 ll~~l~~~~~~~---~~~~~~~l~~---~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIi-TTR~~~ 328 (524)
+..........+ .....+.+++ .. .++.-++|+|+++.. .....|+..+........+|+ ||....
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 110000000000 0111222221 11 234568899999744 446666665554444555554 444333
Q ss_pred hhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH
Q 044627 329 VLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL 383 (524)
Q Consensus 329 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (524)
+... ......++..+++.++..+.+...+-..+.. -..+.+..|++.++|.+.
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMR 215 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 3322 1234568899999999988887766433311 124557788888888764
No 99
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=9.6e-05 Score=73.92 Aligned_cols=156 Identities=11% Similarity=0.069 Sum_probs=88.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccc---------------------cceeEeeeecccccccCHHHHHHHHHHHHh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQF---------------------EGRSFMANVREESKRVELEHLRDQILSQIL 268 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~ 268 (524)
...+.++|+.|+|||++|..+++.+-..- +...++.... .++...+..+. ++...+.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~~i~id~iR-~l~~~~~ 99 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADKTIKVDQVR-ELVSFVV 99 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCCCCCHHHHH-HHHHHHh
Confidence 56788999999999999999999754321 1222222000 00001111111 1111111
Q ss_pred CCCCcccCCchHHHHHHhccCCeEEEecCCCC--hhhHHHHhCCCCCCCCCcEEEEecCChh-hhhhc-CCCeEEEcCCC
Q 044627 269 GENIIKTSIPPRYINKRLQQMKVCIILDNVDK--FGHSEYLTGGLSRFGHGSRVIVTTRDKK-VLDKY-GVDYVYKVEGF 344 (524)
Q Consensus 269 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiTTR~~~-~~~~~-~~~~~~~l~~L 344 (524)
... ..+++-++|+|+++. ......|+..+....+++.+|+||.+.. ++... .-...+.+.++
T Consensus 100 ~~~--------------~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~ 165 (328)
T PRK05707 100 QTA--------------QLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLP 165 (328)
T ss_pred hcc--------------ccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCc
Confidence 000 012334557799974 4456666666655456777777777653 33221 23467899999
Q ss_pred CHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHH
Q 044627 345 NYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNV 387 (524)
Q Consensus 345 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 387 (524)
+.+++.+.+..... .. ..+.+..++..++|.|+....
T Consensus 166 ~~~~~~~~L~~~~~--~~----~~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 166 SNEESLQWLQQALP--ES----DERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred CHHHHHHHHHHhcc--cC----ChHHHHHHHHHcCCCHHHHHH
Confidence 99999999876531 11 123356778899999975443
No 100
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.14 E-value=6.8e-05 Score=78.16 Aligned_cols=153 Identities=8% Similarity=0.108 Sum_probs=88.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccC
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQM 289 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~ 289 (524)
...+.|+|++|+|||+|++++++.+......++++. ...+...+...+... ....++..++ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l~~~-------~~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAIRSG-------EMQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHHhcc-------hHHHHHHHcc-c
Confidence 356889999999999999999998765444455655 223333444443221 1223333333 3
Q ss_pred CeEEEecCCCChh----hHHHHhCCCCC-CCCCcEEEEecCC-hhh--------hhhcCCCeEEEcCCCCHHHHHHHHHH
Q 044627 290 KVCIILDNVDKFG----HSEYLTGGLSR-FGHGSRVIVTTRD-KKV--------LDKYGVDYVYKVEGFNYRESLEIFCY 355 (524)
Q Consensus 290 ~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IIiTTR~-~~~--------~~~~~~~~~~~l~~L~~~ea~~L~~~ 355 (524)
.-+|++||+.... ..+.+...++. ...|..||+||.. +.. ...+...-.+.+.+++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 4588889985321 11222221110 0135578888854 221 22222346789999999999999988
Q ss_pred hhhcCCCCCccHHHHHHHHHHHhcCCh
Q 044627 356 YAFRQNHCPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (524)
.+-.... .-..+++.-|++.+.+.-
T Consensus 283 k~~~~~~--~l~~evl~~la~~~~~di 307 (445)
T PRK12422 283 KAEALSI--RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHcCC--CCCHHHHHHHHHhcCCCH
Confidence 7644321 122455666777776554
No 101
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.14 E-value=6.1e-05 Score=80.16 Aligned_cols=158 Identities=9% Similarity=0.174 Sum_probs=93.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhccccc--ceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFE--GRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQ 287 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~ 287 (524)
...+.|+|..|+|||.|+.++++.....+. .+.|+. ...+...+...+... ....+++.+.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~-------~~~~f~~~y~ 376 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG-------KGDSFRRRYR 376 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc-------cHHHHHHHhh
Confidence 345889999999999999999998765432 345554 233444444333221 1223444444
Q ss_pred cCCeEEEecCCCCh---hh-HHHHhCCCCCC-CCCcEEEEecCCh---------hhhhhcCCCeEEEcCCCCHHHHHHHH
Q 044627 288 QMKVCIILDNVDKF---GH-SEYLTGGLSRF-GHGSRVIVTTRDK---------KVLDKYGVDYVYKVEGFNYRESLEIF 353 (524)
Q Consensus 288 ~~~~LlVlDdv~~~---~~-~~~l~~~~~~~-~~gs~IIiTTR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~ 353 (524)
+ -=+|||||+... +. -+.|...++.. ..+..|||||+.. .+...+...-.+.|++.+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3 347888999532 11 12222222111 2356688888753 12222334567899999999999999
Q ss_pred HHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHH
Q 044627 354 CYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNV 387 (524)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 387 (524)
.+.+-..... --.+++.-|++.+.+..-.|.-
T Consensus 456 ~kka~~r~l~--l~~eVi~yLa~r~~rnvR~Leg 487 (617)
T PRK14086 456 RKKAVQEQLN--APPEVLEFIASRISRNIRELEG 487 (617)
T ss_pred HHHHHhcCCC--CCHHHHHHHHHhccCCHHHHHH
Confidence 8877443321 2256677777777766554443
No 102
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=0.00038 Score=75.52 Aligned_cols=178 Identities=14% Similarity=0.120 Sum_probs=107.2
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccccc----------------------ce
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFE----------------------GR 241 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~----------------------~~ 241 (524)
.....++|.+...+.|...+..+. -...+.++|+.|+||||+|+.+++.+..... .+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 345679999999999999987542 3566889999999999999999987642110 01
Q ss_pred eEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcE
Q 044627 242 SFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSR 319 (524)
Q Consensus 242 ~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 319 (524)
..++ .+...+...+. .+..++.... ..+.+=++|+|+++.. ...+.|+..+......+.
T Consensus 93 ~~ld----~~~~~~vd~Ir-~li~~~~~~P--------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 93 HELD----AASNNSVDDIR-NLIEQVRIPP--------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred EEec----ccccCCHHHHH-HHHHHHhhCc--------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 1111 01111111111 1111111000 1234558899999654 346666666655445666
Q ss_pred EEE-ecCChhhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH
Q 044627 320 VIV-TTRDKKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL 383 (524)
Q Consensus 320 IIi-TTR~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (524)
+|+ ||....+.... .....+++.+++.++....+.+.+-..+.. ...+.+..|++.++|..-
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMR 217 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 555 44544444332 234679999999999998888765433321 224567889999998664
No 103
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=9.1e-05 Score=79.91 Aligned_cols=188 Identities=15% Similarity=0.085 Sum_probs=106.1
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc-c-c-ceeEeeeecccccccCHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ-F-E-GRSFMANVREESKRVELEHL 259 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f-~-~~~wv~~~~~~~~~~~~~~l 259 (524)
|.....+||.+...+.|.+.+..+. -...+.++|+.|+||||+|+.+++.+... . . .-|-.+ ..
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c------------~~ 78 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC------------PP 78 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc------------HH
Confidence 3455689999999999999987542 35667899999999999999999875321 1 0 000000 00
Q ss_pred HHHHHHHHhCCCCcc------cCCchHHH---HHHh-----ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEe
Q 044627 260 RDQILSQILGENIIK------TSIPPRYI---NKRL-----QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVT 323 (524)
Q Consensus 260 ~~~ll~~l~~~~~~~------~~~~~~~l---~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiT 323 (524)
...+.. +...+. .....+.+ .+.+ ..++-++|+|+++.. ...+.|+..+....+.+.+|++
T Consensus 79 c~~i~~---g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~ 155 (576)
T PRK14965 79 CVEITE---GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFA 155 (576)
T ss_pred HHHHhc---CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEE
Confidence 000000 000000 00111111 1111 234457899999644 3455666555544456655554
Q ss_pred c-CChhhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh-HHHHHH
Q 044627 324 T-RDKKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS-LALNVL 388 (524)
Q Consensus 324 T-R~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~ 388 (524)
| ....+.... .....+++.+++.++....+...+-..+.. -..+.+..|++.++|.. .|+..+
T Consensus 156 t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 156 TTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred eCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 444443321 234568899999999888877655332211 12455678888888865 455544
No 104
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.10 E-value=9.2e-05 Score=72.75 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=71.6
Q ss_pred EEEeeccccchHHHHHHHHHhhhccc--ccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhcc-
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISSQ--FEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQ- 288 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~- 288 (524)
.+.++|++|+|||++|+.+++.+... .....|+. .+ ... +...+.+... ..+.+.+..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~----~~~----l~~~~~g~~~-------~~~~~~~~~a 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VT----RDD----LVGQYIGHTA-------PKTKEILKRA 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ec----HHH----HhHhhcccch-------HHHHHHHHHc
Confidence 57899999999999999888865332 11122433 11 111 2222222111 112222221
Q ss_pred CCeEEEecCCCCh-----------hhHHHHhCCCCCCCCCcEEEEecCChhhhhhc--------CCCeEEEcCCCCHHHH
Q 044627 289 MKVCIILDNVDKF-----------GHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKY--------GVDYVYKVEGFNYRES 349 (524)
Q Consensus 289 ~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~--------~~~~~~~l~~L~~~ea 349 (524)
..-+|+||+++.. +..+.|...+.....+.+||+++.....-..+ .....+.+++++.+|-
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 3468999999632 12344444444334566777776543221111 1245789999999999
Q ss_pred HHHHHHhhh
Q 044627 350 LEIFCYYAF 358 (524)
Q Consensus 350 ~~L~~~~~~ 358 (524)
.+++...+-
T Consensus 201 ~~I~~~~l~ 209 (284)
T TIGR02880 201 LVIAGLMLK 209 (284)
T ss_pred HHHHHHHHH
Confidence 999887753
No 105
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.09 E-value=4.2e-05 Score=86.20 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=84.4
Q ss_pred CCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc-c-----cceeEeeeecccccccCHHHH
Q 044627 186 SEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ-F-----EGRSFMANVREESKRVELEHL 259 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f-----~~~~wv~~~~~~~~~~~~~~l 259 (524)
-..++||+.+++++...|.... ..-+.|+|++|+|||++|..++.++... - ...+|.-+.. .+
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~---------~l 246 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG---------LL 246 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH---------HH
Confidence 3569999999999999997643 3345699999999999999999976421 1 1334433221 11
Q ss_pred HHHHHHHHhCCCC--cccCCchHHHHHHhccCCeEEEecCCCCh----------hhHHHHhCCCCCCCCCcEEEEecCCh
Q 044627 260 RDQILSQILGENI--IKTSIPPRYINKRLQQMKVCIILDNVDKF----------GHSEYLTGGLSRFGHGSRVIVTTRDK 327 (524)
Q Consensus 260 ~~~ll~~l~~~~~--~~~~~~~~~l~~~L~~~~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~IIiTTR~~ 327 (524)
.. +... +..+.....+.+.-..++.+|++|+++.. +....|.+.+. ....++|.+|..+
T Consensus 247 ~a-------g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ 317 (821)
T CHL00095 247 LA-------GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLD 317 (821)
T ss_pred hc-------cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHH
Confidence 10 0000 00111111122222346889999999422 11222333332 1234556555544
Q ss_pred hhhhh-------cCCCeEEEcCCCCHHHHHHHHHHh
Q 044627 328 KVLDK-------YGVDYVYKVEGFNYRESLEIFCYY 356 (524)
Q Consensus 328 ~~~~~-------~~~~~~~~l~~L~~~ea~~L~~~~ 356 (524)
..... ......+.++..+.++...++...
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 32111 112356788999999988887643
No 106
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.07 E-value=1.6e-05 Score=82.11 Aligned_cols=173 Identities=20% Similarity=0.231 Sum_probs=97.3
Q ss_pred CCCccchhhhHHhhhhhhhcC-----------CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccccccc
Q 044627 186 SEDLVGVDSHIQRINSLLCIG-----------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRV 254 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (524)
-.++.|.+..+++|.+.+... -...+-+.|+|++|+|||+||+++++.....|- .+. .+
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~----~s--- 251 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV----GS--- 251 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe----cc---
Confidence 356789999999998877421 123567889999999999999999998765542 111 00
Q ss_pred CHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh----------------hHHHHhCCCCCC--CC
Q 044627 255 ELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG----------------HSEYLTGGLSRF--GH 316 (524)
Q Consensus 255 ~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~ 316 (524)
. +.. ...+... ......+.....+.+.+|+||+++... .+-.++..+..+ ..
T Consensus 252 e---L~~----k~~Ge~~---~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 252 E---LIQ----KYLGDGP---KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred h---hhh----hhcchHH---HHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 0 111 0001000 001111122224568899999985221 011222222211 23
Q ss_pred CcEEEEecCChhhhhhc-----CCCeEEEcCCCCHHHHHHHHHHhhhcCCC-CCccHHHHHHHHHHHhcCCh
Q 044627 317 GSRVIVTTRDKKVLDKY-----GVDYVYKVEGFNYRESLEIFCYYAFRQNH-CPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 317 gs~IIiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 382 (524)
+..||+||.....+... .....++++..+.++..++|..+...... ...+ ...++..+.|+-
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~s 389 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELS 389 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCC
Confidence 56788888765443321 23567899999999999999877533221 1112 345555665543
No 107
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=4.1e-05 Score=74.71 Aligned_cols=172 Identities=23% Similarity=0.276 Sum_probs=99.7
Q ss_pred CCccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccC
Q 044627 187 EDLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVE 255 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (524)
...=|-+..+++|+..... +-..++-|.+||++|.|||-||++++++....| +..++
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvvg------- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVG------- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEecc-------
Confidence 3445677777777765543 113577889999999999999999999876554 33111
Q ss_pred HHHHHHHHHHHHhCCCCcccCCchHHHHHHhc-cCCeEEEecCCCChh----------------hHHHHhCCCCCCCC--
Q 044627 256 LEHLRDQILSQILGENIIKTSIPPRYINKRLQ-QMKVCIILDNVDKFG----------------HSEYLTGGLSRFGH-- 316 (524)
Q Consensus 256 ~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~~~-- 316 (524)
. ++.....++. ..+...+.+..+ +.+.+|.+|.++... .+-.|+..+..|.+
T Consensus 219 -S----ElVqKYiGEG----aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 219 -S----ELVQKYIGEG----ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred -H----HHHHHHhccc----hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 1 1222222221 122233333333 358999999996321 12234444444443
Q ss_pred CcEEEEecCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCC-CCCccHHHHHHHHHHHhcCChH
Q 044627 317 GSRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSSL 383 (524)
Q Consensus 317 gs~IIiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~PL 383 (524)
+.+||..|...+++.- -...+.++++.-+.+.-.++|.-++-+-+ ...-+ .+.+++.+.|.-=
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sG 358 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSG 358 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCch
Confidence 5688887765544322 23467888887777767778876654322 11122 3456666766643
No 108
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.04 E-value=4.7e-05 Score=85.85 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=41.8
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
..-+.+|||+.++.++...|.... ..-+.++|.+|+|||+||..++.++..
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 344679999999999999997643 334568999999999999999998754
No 109
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.03 E-value=8.6e-05 Score=83.99 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=85.2
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccc------cceeEeeeecccccccCHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQF------EGRSFMANVREESKRVELE 257 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~ 257 (524)
..-+.+|||+.++..+...|.... ...+.|+|.+|+|||++|..+++++...+ ...+|..+. .
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~---------~ 238 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM---------G 238 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH---------H
Confidence 344679999999999999997643 33455899999999999999999875432 122333211 1
Q ss_pred HHHHHHHHHHhCCCCcccCCchHHHHHHh-c-cCCeEEEecCCCChh----------hHHHHhCCCCCCCCCcEEEEecC
Q 044627 258 HLRDQILSQILGENIIKTSIPPRYINKRL-Q-QMKVCIILDNVDKFG----------HSEYLTGGLSRFGHGSRVIVTTR 325 (524)
Q Consensus 258 ~l~~~ll~~l~~~~~~~~~~~~~~l~~~L-~-~~~~LlVlDdv~~~~----------~~~~l~~~~~~~~~gs~IIiTTR 325 (524)
.+...- ...+ + .+.....+.+.+ . +++.+|++|+++... ..+.|.+.+. . ...++|.+|.
T Consensus 239 ~l~a~~--~~~g---~-~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~-g~i~~IgaTt 310 (852)
T TIGR03346 239 ALIAGA--KYRG---E-FEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-R-GELHCIGATT 310 (852)
T ss_pred HHhhcc--hhhh---h-HHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-c-CceEEEEeCc
Confidence 111000 0000 0 001111122222 2 358999999996331 1222333322 1 1234554444
Q ss_pred Chhhhhh-------cCCCeEEEcCCCCHHHHHHHHHHh
Q 044627 326 DKKVLDK-------YGVDYVYKVEGFNYRESLEIFCYY 356 (524)
Q Consensus 326 ~~~~~~~-------~~~~~~~~l~~L~~~ea~~L~~~~ 356 (524)
.+..-.. ......+.++..+.++..+++...
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 3332110 112246789999999999988755
No 110
>PRK08116 hypothetical protein; Validated
Probab=98.00 E-value=2.9e-05 Score=75.52 Aligned_cols=102 Identities=22% Similarity=0.214 Sum_probs=58.6
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCC
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMK 290 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~ 290 (524)
..+.|+|.+|+|||.||.++++.+..+...++|+. ...+...+........ ......+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~~----~~~~~~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSSG----KEDENEIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhccc----cccHHHHHHHhcCCC
Confidence 45789999999999999999998766544455655 2334444443332211 112223444455444
Q ss_pred eEEEecCCCC--hhh--HHHHhCCCCC-CCCCcEEEEecCCh
Q 044627 291 VCIILDNVDK--FGH--SEYLTGGLSR-FGHGSRVIVTTRDK 327 (524)
Q Consensus 291 ~LlVlDdv~~--~~~--~~~l~~~~~~-~~~gs~IIiTTR~~ 327 (524)
||||||+.. ... .+.+...+.. ...+..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 899999932 222 1222222211 12456689998743
No 111
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.00 E-value=5.9e-05 Score=80.31 Aligned_cols=199 Identities=21% Similarity=0.182 Sum_probs=105.2
Q ss_pred CCCccchhhhHHhhhhhhh---c-------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccC
Q 044627 186 SEDLVGVDSHIQRINSLLC---I-------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVE 255 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~---~-------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (524)
-++++|.+...+++.+.+. . +....+-+.++|++|+|||+||+.++......| +. .+
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~----i~---- 120 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----IS---- 120 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee----cc----
Confidence 3568888877766655443 1 122345688999999999999999998754322 22 11
Q ss_pred HHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh----------------hHHHHhCCCCCC--CCC
Q 044627 256 LEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG----------------HSEYLTGGLSRF--GHG 317 (524)
Q Consensus 256 ~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~g 317 (524)
...+... ..+.. .......+.......+.+|+||+++... .+..++..+... ..+
T Consensus 121 ~~~~~~~----~~g~~---~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 121 GSDFVEM----FVGVG---ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHHHHHH----Hhccc---HHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 1111111 00100 0011122223334567899999995421 122333333222 224
Q ss_pred cEEEEecCChhhhh-----hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 044627 318 SRVIVTTRDKKVLD-----KYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS-LALNVLRSS 391 (524)
Q Consensus 318 s~IIiTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~~ 391 (524)
..||.||..+.... .......+.++..+.++-.++|..+........ ......+++.+.|.. --|..+...
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l~~e 270 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANLLNE 270 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHHHHH
Confidence 45666666543221 113456789999999988999887764322211 122457778887743 334433221
Q ss_pred -----hc-C---CCHHHHHHHHhcC
Q 044627 392 -----FY-R---KSKQHWENALHNP 407 (524)
Q Consensus 392 -----l~-~---~~~~~w~~~l~~l 407 (524)
.+ + -+.+.+..+++..
T Consensus 271 A~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 271 AALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 11 1 2456666666653
No 112
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.00 E-value=6.9e-06 Score=78.61 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=58.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcc-cccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc--------cCCchH
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISS-QFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK--------TSIPPR 280 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~--------~~~~~~ 280 (524)
...++|.|++|+|||||++.+++.+.. +|+.++|+..+++ ...+..++++.+...+.....+. ......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999997644 6888999884432 12578888888833322221110 111222
Q ss_pred HHHHH-hccCCeEEEecCCCCh
Q 044627 281 YINKR-LQQMKVCIILDNVDKF 301 (524)
Q Consensus 281 ~l~~~-L~~~~~LlVlDdv~~~ 301 (524)
..... -.+++++|++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 22222 2468999999999543
No 113
>CHL00181 cbbX CbbX; Provisional
Probab=97.99 E-value=0.00033 Score=68.85 Aligned_cols=130 Identities=13% Similarity=0.128 Sum_probs=73.1
Q ss_pred eEEEeeccccchHHHHHHHHHhhhccc-c-cceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhc-
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQ-F-EGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQ- 287 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~- 287 (524)
..+.++|.+|+|||++|+.+++.+... + ...-|+. ++ ... +.....+.. .....+.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~----~~~----l~~~~~g~~-------~~~~~~~l~~ 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT----RDD----LVGQYIGHT-------APKTKEVLKK 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec----HHH----HHHHHhccc-------hHHHHHHHHH
Confidence 357899999999999999998864321 1 1112333 11 112 222221111 111122221
Q ss_pred cCCeEEEecCCCCh-----------hhHHHHhCCCCCCCCCcEEEEecCChhhhhhc--------CCCeEEEcCCCCHHH
Q 044627 288 QMKVCIILDNVDKF-----------GHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKY--------GVDYVYKVEGFNYRE 348 (524)
Q Consensus 288 ~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~--------~~~~~~~l~~L~~~e 348 (524)
...-+|+||+++.. +..+.|...+.....+.+||+++....+.... .....+.+++++.+|
T Consensus 121 a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 121 AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 13459999999642 23444554444344566777777543321111 235678999999999
Q ss_pred HHHHHHHhhhc
Q 044627 349 SLEIFCYYAFR 359 (524)
Q Consensus 349 a~~L~~~~~~~ 359 (524)
..+++...+-.
T Consensus 201 l~~I~~~~l~~ 211 (287)
T CHL00181 201 LLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHH
Confidence 99998877643
No 114
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.97 E-value=0.00051 Score=64.52 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=42.1
Q ss_pred CCCCCCccchhhhHHhhhhhhhc--CCCCceEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCI--GLPDFRMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
+...+.++|.|.+.+.|.+-... ......-+.+||..|.|||+|++++.+.+...-
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 34456799999999888653322 122466778999999999999999999876643
No 115
>CHL00176 ftsH cell division protein; Validated
Probab=97.97 E-value=9.1e-05 Score=80.31 Aligned_cols=173 Identities=18% Similarity=0.170 Sum_probs=97.6
Q ss_pred CCCccchhhhHHhhhhhh---hcC-------CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccC
Q 044627 186 SEDLVGVDSHIQRINSLL---CIG-------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVE 255 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L---~~~-------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (524)
..+++|.+...+++.+.+ ... ....+-|.|+|++|+|||+||++++...... |+. .+
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~----is---- 248 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS----IS---- 248 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee----cc----
Confidence 356888887777665554 221 1124568999999999999999999875322 222 11
Q ss_pred HHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh----------------hHHHHhCCCCCC--CCC
Q 044627 256 LEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG----------------HSEYLTGGLSRF--GHG 317 (524)
Q Consensus 256 ~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~g 317 (524)
...+..... +.. .......+.......+++|+||+++... .+..++..+..+ ..+
T Consensus 249 ~s~f~~~~~----g~~---~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 249 GSEFVEMFV----GVG---AARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHHHHHHhh----hhh---HHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111111100 000 1111223334445678999999996431 133344333222 235
Q ss_pred cEEEEecCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC
Q 044627 318 SRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS 381 (524)
Q Consensus 318 s~IIiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 381 (524)
..||.||.....+.. ......+.++..+.++-.+++..++..... ........+++.+.|.
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPGF 387 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCCC
Confidence 566767765443221 124567899999999999999887643221 1123456777777773
No 116
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.96 E-value=1e-05 Score=81.07 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=62.2
Q ss_pred hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc-cccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc--
Q 044627 198 RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS-QFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK-- 274 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-- 274 (524)
++.++|..- ..-...+|+|++|+||||||+.+++.+.. +|+..+|+..+++- .....++++.+...+.....+.
T Consensus 158 rvID~l~PI-GkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~ 234 (416)
T PRK09376 158 RIIDLIAPI-GKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPA 234 (416)
T ss_pred eeeeeeccc-ccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCH
Confidence 344555431 23456789999999999999999997654 69999999955432 2367777777763322222111
Q ss_pred ------cCCchHHHHHH-hccCCeEEEecCCCC
Q 044627 275 ------TSIPPRYINKR-LQQMKVCIILDNVDK 300 (524)
Q Consensus 275 ------~~~~~~~l~~~-L~~~~~LlVlDdv~~ 300 (524)
.....+..... ..++++||++|++..
T Consensus 235 ~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 235 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 11111111122 256899999999953
No 117
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.89 E-value=4.3e-05 Score=65.62 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=21.3
Q ss_pred EEeeccccchHHHHHHHHHhhhc
Q 044627 213 VRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 118
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.88 E-value=8.7e-05 Score=81.96 Aligned_cols=151 Identities=18% Similarity=0.196 Sum_probs=84.2
Q ss_pred CCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc-c-----cceeEeeeecccccccCHHHH
Q 044627 186 SEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ-F-----EGRSFMANVREESKRVELEHL 259 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f-----~~~~wv~~~~~~~~~~~~~~l 259 (524)
-+.++||+.++.++...|.... ..-+.|+|.+|+|||+||+.+++++... . +..+|.. ++..+
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l---------~~~~l 253 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL---------DIGSL 253 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec---------cHHHH
Confidence 3469999999999999998743 2345689999999999999999875322 1 2223322 11111
Q ss_pred HHHHHHHHhCCCC-cccCCchHHHHHHh-ccCCeEEEecCCCCh--------hh--H-HHHhCCCCCCCCCcEEEEecCC
Q 044627 260 RDQILSQILGENI-IKTSIPPRYINKRL-QQMKVCIILDNVDKF--------GH--S-EYLTGGLSRFGHGSRVIVTTRD 326 (524)
Q Consensus 260 ~~~ll~~l~~~~~-~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~--------~~--~-~~l~~~~~~~~~gs~IIiTTR~ 326 (524)
+ .+... ...+.....+.+.+ +..+.+|++|+++.. .+ . ..+.+.+. ....++|-+|..
T Consensus 254 ----l---aG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~ 324 (758)
T PRK11034 254 ----L---AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTY 324 (758)
T ss_pred ----h---cccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCCh
Confidence 1 00000 00111112222222 345789999999632 11 2 12333322 123345555543
Q ss_pred hhhhhh-------cCCCeEEEcCCCCHHHHHHHHHHh
Q 044627 327 KKVLDK-------YGVDYVYKVEGFNYRESLEIFCYY 356 (524)
Q Consensus 327 ~~~~~~-------~~~~~~~~l~~L~~~ea~~L~~~~ 356 (524)
+..... ..--..+.++.++.++..+++...
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 332110 112257999999999999999854
No 119
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.00034 Score=70.68 Aligned_cols=203 Identities=14% Similarity=0.162 Sum_probs=117.0
Q ss_pred CCCCCccchhhhHHhhhhhhhc--CCCCceEEEeeccccchHHHHHHHHHhhhcccccc--eeEeeeecccccccCHHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCI--GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEG--RSFMANVREESKRVELEHL 259 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~l 259 (524)
..+..++||+.|+..+..++.. ..+..+.+=|.|-+|.|||.+...++.+....... ++++. ...-.....+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in----c~sl~~~~ai 222 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN----CTSLTEASAI 222 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe----eccccchHHH
Confidence 4467899999999999999876 33457778899999999999999999987665543 34554 2222344555
Q ss_pred HHHHHHHH----hCCCCcccCCchHHHHHHhccC--CeEEEecCCCChhh--HHHHhCCCCCCC-CCcEEEEec-CC---
Q 044627 260 RDQILSQI----LGENIIKTSIPPRYINKRLQQM--KVCIILDNVDKFGH--SEYLTGGLSRFG-HGSRVIVTT-RD--- 326 (524)
Q Consensus 260 ~~~ll~~l----~~~~~~~~~~~~~~l~~~L~~~--~~LlVlDdv~~~~~--~~~l~~~~~~~~-~gs~IIiTT-R~--- 326 (524)
+..|...+ .+... ..+....+..+.... .+|+|+|..|.... -..+...+.|.. +++++|+.- -|
T Consensus 223 F~kI~~~~~q~~~s~~~--~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGT--GMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHHHHHhcCCch--hHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhh
Confidence 55555554 22221 123344455555443 58899999875432 111222222211 355554421 11
Q ss_pred --hhhhhhc-----CCCeEEEcCCCCHHHHHHHHHHhhhcCCCC---CccHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044627 327 --KKVLDKY-----GVDYVYKVEGFNYRESLEIFCYYAFRQNHC---PGDLLVLSDNVVDYANGSSLALNVLRSSF 392 (524)
Q Consensus 327 --~~~~~~~-----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~---~~~~~~~~~~i~~~~~g~PLal~~~~~~l 392 (524)
+..+... -....+..+|.+.++-.++|..+.-..... +...+-.|++++...|.+--||.+.-+.+
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1111111 124567889999999999999876332211 11223344455555555666665554443
No 120
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00081 Score=66.79 Aligned_cols=165 Identities=13% Similarity=0.068 Sum_probs=94.4
Q ss_pred HHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccc------------------cceeEeeeecccccccCHH
Q 044627 196 IQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQF------------------EGRSFMANVREESKRVELE 257 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f------------------~~~~wv~~~~~~~~~~~~~ 257 (524)
.+.+...+..+. -...+.++|+.|+||+++|..+++.+-..- +...|+.. ....
T Consensus 13 ~~~l~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~----~p~~--- 84 (319)
T PRK08769 13 YDQTVAALDAGR-LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF----IPNR--- 84 (319)
T ss_pred HHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec----CCCc---
Confidence 344555554322 255788999999999999999998653321 11111110 0000
Q ss_pred HHHHHHHHHHhCCCCcccCCchHHHHHH---h-----ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCC-
Q 044627 258 HLRDQILSQILGENIIKTSIPPRYINKR---L-----QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRD- 326 (524)
Q Consensus 258 ~l~~~ll~~l~~~~~~~~~~~~~~l~~~---L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~- 326 (524)
.+... ...-.++.+++. + .+++=++|+|+++.. .....|+..+....+++.+|++|.+
T Consensus 85 ----------~~~k~-~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 85 ----------TGDKL-RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred ----------ccccc-cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECCh
Confidence 00000 001123333322 2 234568999999754 3455566655555567777776665
Q ss_pred hhhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHH
Q 044627 327 KKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNV 387 (524)
Q Consensus 327 ~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 387 (524)
..++... .-...+.+.+++.+++.+.+.... . + ...+..++..++|.|+....
T Consensus 154 ~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~-~---~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 154 ARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V-S---ERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred hhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-C---hHHHHHHHHHcCCCHHHHHH
Confidence 3444332 234678999999999998887531 1 1 22356789999999986543
No 121
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.84 E-value=0.00052 Score=69.65 Aligned_cols=134 Identities=12% Similarity=0.154 Sum_probs=83.6
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQ 288 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~ 288 (524)
....+.|||..|.|||.|++++.+......+....+. . +...+...+...+.. ...+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~----~se~f~~~~v~a~~~-------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----L----TSEDFTNDFVKALRD-------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----c----cHHHHHHHHHHHHHh-------hhHHHHHHhh--
Confidence 3678999999999999999999998877777443433 1 233444444444332 2244455555
Q ss_pred CCeEEEecCCCCh----hhHHHHhCCCCCC-CCCcEEEEecCCh---------hhhhhcCCCeEEEcCCCCHHHHHHHHH
Q 044627 289 MKVCIILDNVDKF----GHSEYLTGGLSRF-GHGSRVIVTTRDK---------KVLDKYGVDYVYKVEGFNYRESLEIFC 354 (524)
Q Consensus 289 ~~~LlVlDdv~~~----~~~~~l~~~~~~~-~~gs~IIiTTR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~~ 354 (524)
.-=++++||+.-. ..-+.+...++.. ..|..||+|++.. .+...+...-++.+.+++.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 3348889999421 1122222222211 2355899999642 222333445689999999999999998
Q ss_pred Hhhhc
Q 044627 355 YYAFR 359 (524)
Q Consensus 355 ~~~~~ 359 (524)
+.+..
T Consensus 255 kka~~ 259 (408)
T COG0593 255 KKAED 259 (408)
T ss_pred HHHHh
Confidence 86643
No 122
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.001 Score=62.41 Aligned_cols=179 Identities=11% Similarity=0.037 Sum_probs=101.0
Q ss_pred CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccC----CchHHH
Q 044627 207 LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTS----IPPRYI 282 (524)
Q Consensus 207 ~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~----~~~~~l 282 (524)
+++.+++.++|.-|.|||.++++....+-..=..++.++ ....+...+...+...+...+.-... .....+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 345679999999999999999965554433222233333 23445666777777777663221122 222222
Q ss_pred HHHh-ccCC-eEEEecCCCCh--hhHHH---HhCCCCCCCCCcEEEEecCC---h----hhhhhcC-CCeE-EEcCCCCH
Q 044627 283 NKRL-QQMK-VCIILDNVDKF--GHSEY---LTGGLSRFGHGSRVIVTTRD---K----KVLDKYG-VDYV-YKVEGFNY 346 (524)
Q Consensus 283 ~~~L-~~~~-~LlVlDdv~~~--~~~~~---l~~~~~~~~~gs~IIiTTR~---~----~~~~~~~-~~~~-~~l~~L~~ 346 (524)
.... ++++ ..+++|+..+. +.++. |...-..+..--+|+..-.. + ......+ -..+ |++.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 2222 4566 99999999532 33333 33222211111223332211 1 0011111 1223 89999999
Q ss_pred HHHHHHHHHhhhcCCCCCccH-HHHHHHHHHHhcCChHHHHHHHH
Q 044627 347 RESLEIFCYYAFRQNHCPGDL-LVLSDNVVDYANGSSLALNVLRS 390 (524)
Q Consensus 347 ~ea~~L~~~~~~~~~~~~~~~-~~~~~~i~~~~~g~PLal~~~~~ 390 (524)
++...++..+..+...+.+-+ .+....|.....|.|.++..++.
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 998888877665444333333 45677888999999999987764
No 123
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.82 E-value=0.00044 Score=67.04 Aligned_cols=193 Identities=11% Similarity=0.071 Sum_probs=113.7
Q ss_pred CCccch---hhhHHhhhhhhhcCC-CCceEEEeeccccchHHHHHHHHHhhhccccc------ceeEeeeecccccccCH
Q 044627 187 EDLVGV---DSHIQRINSLLCIGL-PDFRMVRPWDMHGIAKTDIARAILNQISSQFE------GRSFMANVREESKRVEL 256 (524)
Q Consensus 187 ~~~vGR---~~el~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~wv~~~~~~~~~~~~ 256 (524)
+.+||- ...++.|.++|..+. ...+-+.|+|.+|+|||++++.|.+.....++ .++.+. .-..++.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCCh
Confidence 345653 344566677776533 34678999999999999999999986544443 244444 5567899
Q ss_pred HHHHHHHHHHHhCCCCcc--cCCchHHHHHHhcc-CCeEEEecCCCCh-----hhHHHHhC---CCCCCCCCcEEEEecC
Q 044627 257 EHLRDQILSQILGENIIK--TSIPPRYINKRLQQ-MKVCIILDNVDKF-----GHSEYLTG---GLSRFGHGSRVIVTTR 325 (524)
Q Consensus 257 ~~l~~~ll~~l~~~~~~~--~~~~~~~l~~~L~~-~~~LlVlDdv~~~-----~~~~~l~~---~~~~~~~gs~IIiTTR 325 (524)
..++..|+..++.+.... .......+.+.++. +-=+||+|++.+. .+-..++. .+.+.-.-+-|.+.|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 999999999998776422 33334444455554 3558999999653 11111111 1111112345666665
Q ss_pred Ch--------hhhhhcCCCeEEEcCCCCHH-HHHHHHHHhh--hcC-CCCCccHHHHHHHHHHHhcCChHHHH
Q 044627 326 DK--------KVLDKYGVDYVYKVEGFNYR-ESLEIFCYYA--FRQ-NHCPGDLLVLSDNVVDYANGSSLALN 386 (524)
Q Consensus 326 ~~--------~~~~~~~~~~~~~l~~L~~~-ea~~L~~~~~--~~~-~~~~~~~~~~~~~i~~~~~g~PLal~ 386 (524)
+- ++... ..++.++....+ +...|+.... .+- ....-...+++..|.+.++|+.=-+.
T Consensus 190 ~A~~al~~D~QLa~R---F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 190 EAYRALRTDPQLASR---FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHHhccCHHHHhc---cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 42 22222 235566665544 4445543321 111 11122346789999999999875543
No 124
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.81 E-value=0.00016 Score=69.26 Aligned_cols=186 Identities=16% Similarity=0.147 Sum_probs=110.3
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc--cccceeEeeeecccccccCHHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS--QFEGRSFMANVREESKRVELEHLR 260 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~l~ 260 (524)
|...+.++|-+..++.|.+.+.. ...+....||++|.|||+.|+.+++.+-. -|+..+--.+ +|...+..-..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln---aSderGisvvr 106 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN---ASDERGISVVR 106 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc---ccccccccchh
Confidence 44567899999999999998876 45778889999999999999999997533 3543332111 22222222110
Q ss_pred HHHHHHHhCCCCcccCCchHHHHHHh---cc---CC-eEEEecCCCCh--hhHHHHhCCCCCCCCCcEEE-EecCChhhh
Q 044627 261 DQILSQILGENIIKTSIPPRYINKRL---QQ---MK-VCIILDNVDKF--GHSEYLTGGLSRFGHGSRVI-VTTRDKKVL 330 (524)
Q Consensus 261 ~~ll~~l~~~~~~~~~~~~~~l~~~L---~~---~~-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~II-iTTR~~~~~ 330 (524)
..+- ....+.-.. .+ .+ -.+|||+++.. +.|..|......+...++.| ||+--..+.
T Consensus 107 ~Kik-------------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii 173 (346)
T KOG0989|consen 107 EKIK-------------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRII 173 (346)
T ss_pred hhhc-------------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCC
Confidence 0000 000010000 01 12 47889999755 45777777666655666644 444322211
Q ss_pred hh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC-hHHHHHH
Q 044627 331 DK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS-SLALNVL 388 (524)
Q Consensus 331 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 388 (524)
.- ..-...+..++|..++..+-+...+-..+.. -..+..+.|++.++|- --|+..+
T Consensus 174 ~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~--~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 174 RPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD--IDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 11 1123457899999999988888777444322 2356678889988874 3444333
No 125
>PRK08181 transposase; Validated
Probab=97.80 E-value=5.7e-05 Score=73.15 Aligned_cols=99 Identities=14% Similarity=0.051 Sum_probs=55.0
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCC
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMK 290 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~ 290 (524)
.-+.|+|++|+|||.||.++++....+...+.|+. ..++...+...... .....+.+.+. +.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~----------~~~L~~~l~~a~~~-------~~~~~~l~~l~-~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR----------TTDLVQKLQVARRE-------LQLESAIAKLD-KF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee----------HHHHHHHHHHHHhC-------CcHHHHHHHHh-cC
Confidence 45889999999999999999997765544566665 23444444322111 11122222232 34
Q ss_pred eEEEecCCCCh----hhHHHHhCCCCCCCCCcEEEEecCCh
Q 044627 291 VCIILDNVDKF----GHSEYLTGGLSRFGHGSRVIVTTRDK 327 (524)
Q Consensus 291 ~LlVlDdv~~~----~~~~~l~~~~~~~~~gs~IIiTTR~~ 327 (524)
-||||||+... ...+.+...+...-.+..+||||..+
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 59999999422 11222222222111123588888754
No 126
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.79 E-value=0.0012 Score=62.66 Aligned_cols=262 Identities=13% Similarity=0.130 Sum_probs=140.8
Q ss_pred CCCCCCccchhhhHHhhhhhhhc---CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHH
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCI---GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHL 259 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 259 (524)
|..-..|||-+...+.|.=++.. .....--|.++|++|.||||||.-+++.+..++. +..........++..+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~tsGp~leK~gDlaai 97 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----ITSGPALEKPGDLAAI 97 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----ecccccccChhhHHHH
Confidence 44557899999999888777754 1233667899999999999999999998876543 1100001111222221
Q ss_pred HHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh-hHHH-HhCCCCC--------CCCC-----------c
Q 044627 260 RDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG-HSEY-LTGGLSR--------FGHG-----------S 318 (524)
Q Consensus 260 ~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-~~~~-l~~~~~~--------~~~g-----------s 318 (524)
+..+. ..=+|.+|.+.... ..+. +.+.... .+++ .
T Consensus 98 ----Lt~Le--------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 98 ----LTNLE--------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ----HhcCC--------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 11111 12244556553221 1111 1111110 1122 2
Q ss_pred EEEEecCChhhhhhc--CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCCC
Q 044627 319 RVIVTTRDKKVLDKY--GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRKS 396 (524)
Q Consensus 319 ~IIiTTR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~ 396 (524)
.|=.|||.-.+..-+ ...-+.+++-.+.+|-.++..+.+..-+ .+-.++.+.+|+++..|-|--..-+-...+
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR--- 228 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRLLRRVR--- 228 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHHHHHHH---
Confidence 334588864332211 1334678888999999999988773322 112356688999999999964433333222
Q ss_pred HHHHHHHHhcCCC--CCCccHHHHHHHhHhcCChHHHHHHhhccccc--CCCCHHHHHHHHhhc-cchhHhH-HHHhhCC
Q 044627 397 KQHWENALHNPKQ--ISDPDIHDMLKISYDELNYKEKDLFLDIACFF--NGEGRDYVKIILNNR-YLVHYGL-NILAGKA 470 (524)
Q Consensus 397 ~~~w~~~l~~l~~--~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~--~~~~~~~l~~l~~~~-~~~~~~l-~~L~~~s 470 (524)
++..+...-.- .......+.|.+-=..|+.-.++++..+.-.+ .+...+.+...+..+ ...++.+ --|++.|
T Consensus 229 --Dfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~g 306 (332)
T COG2255 229 --DFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQG 306 (332)
T ss_pred --HHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhc
Confidence 11111111000 00011233333334456666666666555444 336777777777665 3333333 3588999
Q ss_pred ceEEe-CCeE
Q 044627 471 LITIS-NNKL 479 (524)
Q Consensus 471 Li~~~-~~~~ 479 (524)
+|+.. .|++
T Consensus 307 fi~RTpRGR~ 316 (332)
T COG2255 307 FIQRTPRGRI 316 (332)
T ss_pred hhhhCCCcce
Confidence 99877 5553
No 127
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.79 E-value=2.7e-05 Score=68.85 Aligned_cols=64 Identities=20% Similarity=0.382 Sum_probs=54.8
Q ss_pred cEEecCccccc-CCchHHHHHHHHHhC-CCceEecC-CcCC--CCcchHHHHHhhhhcceEEEEeecCc
Q 044627 14 DVFLSFRGEDT-RNNFTSHLFAAFCRE-KIKAFIDE-QLKK--GDDISSALLNAIEESKISVIIFSKGY 77 (524)
Q Consensus 14 dvFis~~~~D~-~~~~~~~l~~~L~~~-g~~~~~d~-~~~~--g~~~~~~i~~~i~~s~~~i~v~S~~y 77 (524)
-|||||++... ...++..|++.|+.. |+.|.+|. +... +..+..++.+.+++++.+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 48999998543 236799999999999 99999998 6643 77899999999999999999999655
No 128
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.78 E-value=0.00045 Score=71.17 Aligned_cols=164 Identities=16% Similarity=0.106 Sum_probs=94.4
Q ss_pred hhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCC
Q 044627 192 VDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGEN 271 (524)
Q Consensus 192 R~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~ 271 (524)
|..-+.++.+.+... ..++.|.|+-++|||||++.+....... .+++...........+.+....+
T Consensus 22 ~~~~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~-------- 87 (398)
T COG1373 22 RRKLLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAY-------- 87 (398)
T ss_pred HHhhhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHH--------
Confidence 334445555555432 2299999999999999997777766554 55555221111111111111111
Q ss_pred CcccCCchHHHHHHhccCCeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCChhhhhh------cCCCeEEEcCCCC
Q 044627 272 IIKTSIPPRYINKRLQQMKVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDK------YGVDYVYKVEGFN 345 (524)
Q Consensus 272 ~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~------~~~~~~~~l~~L~ 345 (524)
.+.-..++.+|+||.|.....|+..+..+...++. +|++|+-+...... .|-...+++-||+
T Consensus 88 -----------~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 88 -----------IELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred -----------HHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 11111177899999999998888877766555555 78888876544322 2345678999999
Q ss_pred HHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHH
Q 044627 346 YRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNV 387 (524)
Q Consensus 346 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 387 (524)
..|-..+..... ... .. ...-+-.-.+||.|-++..
T Consensus 156 F~Efl~~~~~~~----~~~-~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 156 FREFLKLKGEEI----EPS-KL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred HHHHHhhccccc----chh-HH-HHHHHHHHHhCCCcHHHhC
Confidence 999876533000 000 01 1122233356888887743
No 129
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00069 Score=68.10 Aligned_cols=145 Identities=13% Similarity=0.117 Sum_probs=86.9
Q ss_pred Cccc-hhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc---------------------ccceeEee
Q 044627 188 DLVG-VDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ---------------------FEGRSFMA 245 (524)
Q Consensus 188 ~~vG-R~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~wv~ 245 (524)
.++| -+..++.+...+..+. -.....++|+.|+|||++|..+++.+-.. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 3566 6667777777776432 35677899999999999999998865321 11122221
Q ss_pred eecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHh-----ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCc
Q 044627 246 NVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRL-----QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGS 318 (524)
Q Consensus 246 ~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs 318 (524)
.. .....+.+ +..+.+.+ .+.+=++|+|+++.. +....|+..+....+++
T Consensus 85 ~~---~~~i~id~--------------------ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~ 141 (329)
T PRK08058 85 PD---GQSIKKDQ--------------------IRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGT 141 (329)
T ss_pred cc---cccCCHHH--------------------HHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCc
Confidence 00 00001111 11111111 234557889998644 34566776666555677
Q ss_pred EEEEecCChh-hhhhc-CCCeEEEcCCCCHHHHHHHHHHh
Q 044627 319 RVIVTTRDKK-VLDKY-GVDYVYKVEGFNYRESLEIFCYY 356 (524)
Q Consensus 319 ~IIiTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~ 356 (524)
.+|++|.++. +.... .....+++.+++.++..+.+...
T Consensus 142 ~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 142 TAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred eEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 7777776543 33222 23567999999999998888754
No 130
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.77 E-value=8.2e-05 Score=64.10 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=28.2
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..+.|+|++|+||||+|+.++..+......++++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 57889999999999999999998766553455554
No 131
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.76 E-value=8.9e-05 Score=72.93 Aligned_cols=162 Identities=20% Similarity=0.184 Sum_probs=101.9
Q ss_pred CCCccchhhhHHhhhhhhhcCCCC-ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHH
Q 044627 186 SEDLVGVDSHIQRINSLLCIGLPD-FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQIL 264 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~~~~-~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll 264 (524)
.+.|.+|+.++..+..+|...+.. +..|.|+|-.|.|||.+.+++.+...- ..+|++ .-...+...+...|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n----~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLN----CVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeee----hHHhccHHHHHHHHH
Confidence 356889999999999999875543 445589999999999999999997732 357888 555678888888999
Q ss_pred HHHhCCCCc--ccCC-------chHHHHH--Hhc--cCCeEEEecCCCChhhHHH-----Hh---CCCCCCCCCcEEEEe
Q 044627 265 SQILGENII--KTSI-------PPRYINK--RLQ--QMKVCIILDNVDKFGHSEY-----LT---GGLSRFGHGSRVIVT 323 (524)
Q Consensus 265 ~~l~~~~~~--~~~~-------~~~~l~~--~L~--~~~~LlVlDdv~~~~~~~~-----l~---~~~~~~~~gs~IIiT 323 (524)
.+++..+.+ .... ....+.+ ... ++.++|||||++...+.+. +. ..++ .+. .+|++
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~-i~iil 154 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPT-IVIIL 154 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCc-eEEEE
Confidence 888522221 1111 1122222 122 3589999999976554322 11 1111 123 34444
Q ss_pred cCCh---hhhhhcCCC--eEEEcCCCCHHHHHHHHHHhh
Q 044627 324 TRDK---KVLDKYGVD--YVYKVEGFNYRESLEIFCYYA 357 (524)
Q Consensus 324 TR~~---~~~~~~~~~--~~~~l~~L~~~ea~~L~~~~~ 357 (524)
+-.. .....+|.. -++..+.-+.+|..+++.+.-
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 4322 222223332 345778888899888887643
No 132
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.75 E-value=0.00021 Score=79.83 Aligned_cols=174 Identities=17% Similarity=0.183 Sum_probs=92.7
Q ss_pred CCCccchhhhHHhhhhhhhcC-----------CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccccccc
Q 044627 186 SEDLVGVDSHIQRINSLLCIG-----------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRV 254 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (524)
-+++.|.+..++.+.+.+... -...+.+.|+|++|+|||+||+.+++.....| +.+. ..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~------ 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GP------ 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cH------
Confidence 345889999999998876421 12356788999999999999999999775432 2222 00
Q ss_pred CHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh-------------hHHHHhCCCCCCC-CCcEE
Q 044627 255 ELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG-------------HSEYLTGGLSRFG-HGSRV 320 (524)
Q Consensus 255 ~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~-~gs~I 320 (524)
.+. ....+.. .......+.....+.+.+|+||+++... ....|+..+.... .+..+
T Consensus 247 ---~i~----~~~~g~~---~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 ---EIM----SKYYGES---EERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred ---HHh----cccccHH---HHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 000 0000000 0011112222334567899999985321 1223333222221 23334
Q ss_pred EE-ecCChhhhh-h----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh
Q 044627 321 IV-TTRDKKVLD-K----YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 321 Ii-TTR~~~~~~-~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (524)
+| ||....-.. . ......+.+...+.++-.+++..+.-...... ......+++.+.|..
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 44 454332111 1 12345678888888888888875532211111 112466777777764
No 133
>PRK12377 putative replication protein; Provisional
Probab=97.75 E-value=0.00013 Score=69.81 Aligned_cols=73 Identities=12% Similarity=0.063 Sum_probs=46.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccC
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQM 289 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~ 289 (524)
...+.|+|.+|+|||+||.++++.+......+.|+. ..++...+....... .....+.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~----------~~~l~~~l~~~~~~~------~~~~~~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT----------VPDVMSRLHESYDNG------QSGEKFLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE----------HHHHHHHHHHHHhcc------chHHHHHHHh-cC
Confidence 457889999999999999999998876655566666 233444443332111 0111222333 34
Q ss_pred CeEEEecCCC
Q 044627 290 KVCIILDNVD 299 (524)
Q Consensus 290 ~~LlVlDdv~ 299 (524)
--||||||+.
T Consensus 164 ~dLLiIDDlg 173 (248)
T PRK12377 164 VDLLVLDEIG 173 (248)
T ss_pred CCEEEEcCCC
Confidence 5689999993
No 134
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.74 E-value=0.0003 Score=78.56 Aligned_cols=172 Identities=22% Similarity=0.222 Sum_probs=95.6
Q ss_pred CCccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccC
Q 044627 187 EDLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVE 255 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (524)
..+.|.+...++|.+.+.. +-...+-+.++|++|+|||+||+++++.....| +.+. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~------~--- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR------G--- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe------h---
Confidence 4577888888877776542 112355688999999999999999999876443 1111 0
Q ss_pred HHHHHHHHHHHHhCCCCcccCCchHHHH-HHhccCCeEEEecCCCChh--------------hHHHHhCCCCCC--CCCc
Q 044627 256 LEHLRDQILSQILGENIIKTSIPPRYIN-KRLQQMKVCIILDNVDKFG--------------HSEYLTGGLSRF--GHGS 318 (524)
Q Consensus 256 ~~~l~~~ll~~l~~~~~~~~~~~~~~l~-~~L~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~~--~~gs 318 (524)
. .++....+.. +.....+. ..-...+.+|+||+++... .+..++..+... ..+.
T Consensus 521 -~----~l~~~~vGes----e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 521 -P----EILSKWVGES----EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred -H----HHhhcccCcH----HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 0 1111111111 01111122 2223467999999995321 123333333321 2344
Q ss_pred EEEEecCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh
Q 044627 319 RVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 319 ~IIiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (524)
.||.||..+..... -.....+.++..+.++-.++|..+..+..... + .....+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~-~--~~l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE-D--VDLEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc-c--CCHHHHHHHcCCCC
Confidence 56667765543322 13456789999999999999876643222111 1 11456677777754
No 135
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.73 E-value=0.00018 Score=77.57 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=43.6
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCC---CCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGL---PDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~---~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
|.....++|-+..++++..+|.... ...+++.|+|++|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456779999999999999987632 3356799999999999999999998654
No 136
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.73 E-value=5.6e-05 Score=76.16 Aligned_cols=91 Identities=12% Similarity=0.131 Sum_probs=60.5
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhccc-ccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc--------cCCch
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQ-FEGRSFMANVREESKRVELEHLRDQILSQILGENIIK--------TSIPP 279 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~--------~~~~~ 279 (524)
....++|+|++|+|||||++.+++.+..+ |+..+|+..+++ ......++++.++..+.....+. .....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 34678899999999999999999987655 888999984432 13578888888854443332211 11111
Q ss_pred HHHHHH-hccCCeEEEecCCCCh
Q 044627 280 RYINKR-LQQMKVCIILDNVDKF 301 (524)
Q Consensus 280 ~~l~~~-L~~~~~LlVlDdv~~~ 301 (524)
+..... -.+++++|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 111222 2568999999999543
No 137
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.72 E-value=0.00016 Score=75.86 Aligned_cols=175 Identities=19% Similarity=0.130 Sum_probs=92.2
Q ss_pred CCccchhhhHHhhhhhh---hc-----CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHH
Q 044627 187 EDLVGVDSHIQRINSLL---CI-----GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEH 258 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L---~~-----~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (524)
.++.|.+...+.+.... .. +-...+-|.++|++|+|||.+|+++++...-.| +-+. . ..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~---~~l~-~---------~~ 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL---LRLD-V---------GK 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEEE-h---------HH
Confidence 45778776665554421 11 123467789999999999999999999765332 1111 0 00
Q ss_pred HHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChhh--------------HHHHhCCCCCCCCCcEEEEec
Q 044627 259 LRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFGH--------------SEYLTGGLSRFGHGSRVIVTT 324 (524)
Q Consensus 259 l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~--------------~~~l~~~~~~~~~gs~IIiTT 324 (524)
+.....+.. .......+...-...+++|++|+++..-. +..++..+.....+..||.||
T Consensus 295 ----l~~~~vGes---e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 295 ----LFGGIVGES---ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred ----hcccccChH---HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 100000000 00011111111234689999999963210 112222222222344566777
Q ss_pred CChhhhh-----hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh
Q 044627 325 RDKKVLD-----KYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 325 R~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (524)
.+...+. .......+.++..+.++-.++|..+..+..... ........+++.+.|+-
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~-~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKS-WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCc-ccccCHHHHHhhcCCCC
Confidence 6554322 123567889999999999999987764422110 00112456666666654
No 138
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.0034 Score=62.34 Aligned_cols=157 Identities=13% Similarity=0.080 Sum_probs=93.3
Q ss_pred HhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc--------------------ccceeEeeeecccccccCH
Q 044627 197 QRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ--------------------FEGRSFMANVREESKRVEL 256 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~--------------------f~~~~wv~~~~~~~~~~~~ 256 (524)
+.+.+.+..+ .-...+.++|+.|+||+++|..+++.+-.. ++...|+.... ...
T Consensus 13 ~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~---- 86 (319)
T PRK06090 13 QNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGK---- 86 (319)
T ss_pred HHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCC----
Confidence 3444444432 235688899999999999999998864221 11222222000 000
Q ss_pred HHHHHHHHHHHhCCCCcccCCchHHHH---HHh-----ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCC
Q 044627 257 EHLRDQILSQILGENIIKTSIPPRYIN---KRL-----QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRD 326 (524)
Q Consensus 257 ~~l~~~ll~~l~~~~~~~~~~~~~~l~---~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~ 326 (524)
.-.++.++ +.+ .+..=++|+|+++.. .....|+..+....+++.+|++|.+
T Consensus 87 -------------------~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 87 -------------------SITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred -------------------cCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 01122222 222 233458889999744 4466666666655567777666665
Q ss_pred h-hhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHH
Q 044627 327 K-KVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVL 388 (524)
Q Consensus 327 ~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 388 (524)
+ .++... .-...+.+.+++.+++.+.+.... . . .+..++..++|.|+....+
T Consensus 148 ~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~-~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 148 QKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I-T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-c-----hHHHHHHHcCCCHHHHHHH
Confidence 4 444432 235688999999999999887542 1 1 1346788999999866443
No 139
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.68 E-value=0.00023 Score=67.94 Aligned_cols=88 Identities=9% Similarity=0.071 Sum_probs=51.3
Q ss_pred HHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCccc
Q 044627 196 IQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKT 275 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~ 275 (524)
+..+.++...-......+.++|.+|+|||+||.++++.+......++++. ..++...+-......
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it----------~~~l~~~l~~~~~~~----- 149 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT----------VADIMSAMKDTFSNS----- 149 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE----------HHHHHHHHHHHHhhc-----
Confidence 33444444322223457889999999999999999998766555566665 233443333322110
Q ss_pred CCchHHHHHHhccCCeEEEecCCC
Q 044627 276 SIPPRYINKRLQQMKVCIILDNVD 299 (524)
Q Consensus 276 ~~~~~~l~~~L~~~~~LlVlDdv~ 299 (524)
......+.+.+. +.=||||||+.
T Consensus 150 ~~~~~~~l~~l~-~~dlLvIDDig 172 (244)
T PRK07952 150 ETSEEQLLNDLS-NVDLLVIDEIG 172 (244)
T ss_pred cccHHHHHHHhc-cCCEEEEeCCC
Confidence 111223444455 34588889994
No 140
>PRK09183 transposase/IS protein; Provisional
Probab=97.67 E-value=0.00014 Score=70.49 Aligned_cols=35 Identities=17% Similarity=0.075 Sum_probs=26.1
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..+.|+|++|+|||+||..++.........+.|+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 46779999999999999999886544333344544
No 141
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.66 E-value=0.00031 Score=68.26 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=21.9
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
..|.|.|.+|+|||+||+.+++....
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~ 47 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDR 47 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 35679999999999999999986543
No 142
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0031 Score=62.82 Aligned_cols=167 Identities=11% Similarity=0.082 Sum_probs=93.9
Q ss_pred HhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc--
Q 044627 197 QRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK-- 274 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-- 274 (524)
+.+.+.+..+. -...+.++|+.|+||+++|..+++.+-..-+... ..+ +.-...+.+.. +..++.
T Consensus 12 ~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~--~~C-------g~C~sC~~~~~---g~HPD~~~ 78 (325)
T PRK06871 12 QQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD--QPC-------GQCHSCHLFQA---GNHPDFHI 78 (325)
T ss_pred HHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCC-------CCCHHHHHHhc---CCCCCEEE
Confidence 44555554332 2567889999999999999999986533211000 000 00000001100 000000
Q ss_pred ------cCCchHHHHH---Hh-----ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCCh-hhhhhc-CCC
Q 044627 275 ------TSIPPRYINK---RL-----QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDK-KVLDKY-GVD 336 (524)
Q Consensus 275 ------~~~~~~~l~~---~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~~~-~~~ 336 (524)
..-.++.+++ .+ .+++=++|+|+++.. .....|+..+....+++.+|++|.++ .++... .-.
T Consensus 79 i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 79 LEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred EccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence 0112333332 22 234557889999754 44666776666556677777777664 444332 235
Q ss_pred eEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH
Q 044627 337 YVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL 383 (524)
Q Consensus 337 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (524)
..+.+.+++.+++.+.+..... .. ...+...+..++|.|+
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~----~~---~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSS----AE---ISEILTALRINYGRPL 198 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhc----cC---hHHHHHHHHHcCCCHH
Confidence 6899999999999988887531 11 1235567888999996
No 143
>PRK06526 transposase; Provisional
Probab=97.63 E-value=9.7e-05 Score=71.14 Aligned_cols=36 Identities=17% Similarity=-0.019 Sum_probs=26.9
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..-+.|+|++|+|||+||.+++......-..+.|+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t 133 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFAT 133 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhh
Confidence 346889999999999999999987654433344443
No 144
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.60 E-value=0.0012 Score=73.55 Aligned_cols=186 Identities=15% Similarity=0.148 Sum_probs=97.7
Q ss_pred ccchhhhHHHHHhhccccccccccCC-----------CCCCccchhhhHHhhhhhhhc----CCCCceEEEeeccccchH
Q 044627 159 IRHEAELVDEIVKDILKKIHDISHFG-----------NSEDLVGVDSHIQRINSLLCI----GLPDFRMVRPWDMHGIAK 223 (524)
Q Consensus 159 ~~~e~~~i~~i~~~v~~~l~~~~~~~-----------~~~~~vGR~~el~~l~~~L~~----~~~~~~~v~I~G~gGiGK 223 (524)
..+|+..+..-.+-+....+. .... .+...+|.+...++|..+|.. .......++++|++|+||
T Consensus 284 ~~~e~~~~~~yl~~~~~~pw~-~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GK 362 (784)
T PRK10787 284 MSAEATVVRGYIDWMVQVPWN-ARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGK 362 (784)
T ss_pred CCchHHHHHHHHHHHHhCCCC-CCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCH
Confidence 345666666655555443332 1111 235689999999999988864 112456899999999999
Q ss_pred HHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChhh
Q 044627 224 TDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFGH 303 (524)
Q Consensus 224 TtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~ 303 (524)
||+|+.++..+...|-.+-+ . ...+...+...- ....+.. .......+.+ ....+-+++||.++....
T Consensus 363 Ttl~~~ia~~l~~~~~~i~~-~------~~~d~~~i~g~~-~~~~g~~---~G~~~~~l~~-~~~~~~villDEidk~~~ 430 (784)
T PRK10787 363 TSLGQSIAKATGRKYVRMAL-G------GVRDEAEIRGHR-RTYIGSM---PGKLIQKMAK-VGVKNPLFLLDEIDKMSS 430 (784)
T ss_pred HHHHHHHHHHhCCCEEEEEc-C------CCCCHHHhccch-hccCCCC---CcHHHHHHHh-cCCCCCEEEEEChhhccc
Confidence 99999999876544322111 1 111111111100 0000000 1111122221 122345788999964321
Q ss_pred ------HHHHhCCCCC---------------CCCCcEEEEecCChhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhh
Q 044627 304 ------SEYLTGGLSR---------------FGHGSRVIVTTRDKKVLDK-YGVDYVYKVEGFNYRESLEIFCYYA 357 (524)
Q Consensus 304 ------~~~l~~~~~~---------------~~~gs~IIiTTR~~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~ 357 (524)
...|+..+.. .-....+|.|+....+... .+-..++++.+++.+|-.++..++.
T Consensus 431 ~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 431 DMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred ccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 2334333221 0123344555543322111 1223578999999999988877665
No 145
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.60 E-value=0.0011 Score=74.01 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=39.3
Q ss_pred CCCccchhhhHHhhhhhhhcC------C-CCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 186 SEDLVGVDSHIQRINSLLCIG------L-PDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~------~-~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...++|-+..++.+...+... . ....++.++|++|+|||+||+.+++.+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 456889999999888877641 1 1244688999999999999999999774
No 146
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.0028 Score=63.62 Aligned_cols=156 Identities=9% Similarity=0.027 Sum_probs=93.1
Q ss_pred HhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc---------------------ccceeEeeeecccccccC
Q 044627 197 QRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ---------------------FEGRSFMANVREESKRVE 255 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~wv~~~~~~~~~~~ 255 (524)
+.+.+.+..+ .-...+.++|+.|+||+++|.+++..+-.. .+...++...
T Consensus 12 ~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~-------- 82 (334)
T PRK07993 12 EQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPE-------- 82 (334)
T ss_pred HHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc--------
Confidence 4455555432 235688899999999999999999865321 1112222100
Q ss_pred HHHHHHHHHHHHhCCCCcccCCchHHHH---HHh-----ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecC
Q 044627 256 LEHLRDQILSQILGENIIKTSIPPRYIN---KRL-----QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTR 325 (524)
Q Consensus 256 ~~~l~~~ll~~l~~~~~~~~~~~~~~l~---~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR 325 (524)
... ..-.++.++ +.+ .+++=++|+|+++.. .....|+..+....+++.+|++|.
T Consensus 83 ---------------~~~-~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 83 ---------------KGK-SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred ---------------ccc-ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 000 001122222 222 234568899999744 456666666665556777776666
Q ss_pred Ch-hhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHH
Q 044627 326 DK-KVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (524)
Q Consensus 326 ~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 384 (524)
+. .++... .-...+.+.+++.+++.+.+.... . .+ .+.+..++..++|.|..
T Consensus 147 ~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~---~-~~---~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 147 EPARLLATLRSRCRLHYLAPPPEQYALTWLSREV---T-MS---QDALLAALRLSAGAPGA 200 (334)
T ss_pred ChhhChHHHHhccccccCCCCCHHHHHHHHHHcc---C-CC---HHHHHHHHHHcCCCHHH
Confidence 54 444332 234568999999999998886542 1 11 23366788999999963
No 147
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0013 Score=70.01 Aligned_cols=158 Identities=21% Similarity=0.254 Sum_probs=90.3
Q ss_pred CCCccchhhhHHhhhhhhhcC----CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHH
Q 044627 186 SEDLVGVDSHIQRINSLLCIG----LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRD 261 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~----~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~ 261 (524)
+.+-+|.++..++|.++|.-+ .-..++++++|+||+|||.|++.+++-+...|-... +-. +.+...
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGG---vrDEAE------ 391 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGG---VRDEAE------ 391 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCc---cccHHH------
Confidence 356789999999999988642 234679999999999999999999998876653111 111 111111
Q ss_pred HHHHHHhCCCCcccCCchHHHHHHh---ccCCeEEEecCCCChhh----------HHHHhCCCCC-C--------CCCcE
Q 044627 262 QILSQILGENIIKTSIPPRYINKRL---QQMKVCIILDNVDKFGH----------SEYLTGGLSR-F--------GHGSR 319 (524)
Q Consensus 262 ~ll~~l~~~~~~~~~~~~~~l~~~L---~~~~~LlVlDdv~~~~~----------~~~l~~~~~~-~--------~~gs~ 319 (524)
+.++........-..+.+-+ +.++-|++||.++.... ++.|.+..+. | -.=|.
T Consensus 392 -----IRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 392 -----IRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred -----hccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 11111111112222232222 34678999999974422 2222221110 0 01133
Q ss_pred E-EEecCCh-h-h-hhhcCCCeEEEcCCCCHHHHHHHHHHhhh
Q 044627 320 V-IVTTRDK-K-V-LDKYGVDYVYKVEGFNYRESLEIFCYYAF 358 (524)
Q Consensus 320 I-IiTTR~~-~-~-~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 358 (524)
| .|||-|. + + ...++.-.++++.+-+.+|-+++-+++..
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 3 4555442 1 1 12223447899999999999888877753
No 148
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.59 E-value=0.012 Score=59.86 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=66.7
Q ss_pred CeEEEecCCCChh--------hHHHHhCCCCCCCCCcEEEEecCChhhhhhc------CCCeEEEcCCCCHHHHHHHHHH
Q 044627 290 KVCIILDNVDKFG--------HSEYLTGGLSRFGHGSRVIVTTRDKKVLDKY------GVDYVYKVEGFNYRESLEIFCY 355 (524)
Q Consensus 290 ~~LlVlDdv~~~~--------~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~------~~~~~~~l~~L~~~ea~~L~~~ 355 (524)
+-++|+||..... .+..+...+- ..+-.+||++|-+......+ ...+.+.|...+.+-|.++...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 6789999994221 1122222221 12456899988875443322 2346789999999999999988
Q ss_pred hhhcCCCC-------------C-----ccHHHHHHHHHHHhcCChHHHHHHHHHhcC
Q 044627 356 YAFRQNHC-------------P-----GDLLVLSDNVVDYANGSSLALNVLRSSFYR 394 (524)
Q Consensus 356 ~~~~~~~~-------------~-----~~~~~~~~~i~~~~~g~PLal~~~~~~l~~ 394 (524)
+....... . ..........++.+||--.-|..++..++.
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 76443110 0 124455677888899999999988888854
No 149
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.59 E-value=0.00063 Score=67.65 Aligned_cols=151 Identities=14% Similarity=0.080 Sum_probs=80.1
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccc-c-ccCHHHHHHHHHHHHhCCCCcccCCchHHHHHH
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREES-K-RVELEHLRDQILSQILGENIIKTSIPPRYINKR 285 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~-~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~ 285 (524)
..++.++|||++|+|||.+|+++++.+...| +-++ ..+.. . ........++++.. ..+.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~---i~vs-a~eL~sk~vGEsEk~IR~~F~~---------------A~~~ 206 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP---IVMS-AGELESENAGEPGKLIRQRYRE---------------AADI 206 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe---EEEE-HHHhhcCcCCcHHHHHHHHHHH---------------HHHH
Confidence 3478999999999999999999999886553 1122 11110 0 01112222222211 1111
Q ss_pred h--ccCCeEEEecCCCCh------------hhH--HHHhCCCC--------------CCCCCcEEEEecCChhhhhhc--
Q 044627 286 L--QQMKVCIILDNVDKF------------GHS--EYLTGGLS--------------RFGHGSRVIVTTRDKKVLDKY-- 333 (524)
Q Consensus 286 L--~~~~~LlVlDdv~~~------------~~~--~~l~~~~~--------------~~~~gs~IIiTTR~~~~~~~~-- 333 (524)
. ++++++|++|+++.. .++ ..|+.... ...++..||+||..+..+...
T Consensus 207 a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALl 286 (413)
T PLN00020 207 IKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLI 286 (413)
T ss_pred hhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHc
Confidence 1 457899999999521 011 22332111 123456788888766543221
Q ss_pred ---CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH
Q 044627 334 ---GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL 383 (524)
Q Consensus 334 ---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (524)
.....| ...+.++-.+++..+.-. ...+ .....+|++...|-|+
T Consensus 287 RpGRfDk~i--~lPd~e~R~eIL~~~~r~-~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 287 RDGRMEKFY--WAPTREDRIGVVHGIFRD-DGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCCCCcee--CCCCHHHHHHHHHHHhcc-CCCC---HHHHHHHHHcCCCCCc
Confidence 122333 344566666776655422 2222 2445677777777775
No 150
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00037 Score=67.12 Aligned_cols=79 Identities=14% Similarity=0.199 Sum_probs=49.9
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh----cccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHH
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI----SSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKR 285 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~ 285 (524)
-|+|.++|+||.|||+|++++++++ .+.|....-+. . +-.+++...+. +..+........+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----i----nshsLFSKWFs----ESgKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----I----NSHSLFSKWFS----ESGKLVAKMFQKIQEL 244 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----E----ehhHHHHHHHh----hhhhHHHHHHHHHHHH
Confidence 5789999999999999999999964 44565555555 2 22333333332 2222233445566666
Q ss_pred hccCCe--EEEecCCCC
Q 044627 286 LQQMKV--CIILDNVDK 300 (524)
Q Consensus 286 L~~~~~--LlVlDdv~~ 300 (524)
+.++.. ++.+|.|+.
T Consensus 245 v~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVES 261 (423)
T ss_pred HhCCCcEEEEEeHHHHH
Confidence 666653 455899854
No 151
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.58 E-value=0.00082 Score=76.15 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=73.7
Q ss_pred CCCccchhhhHHhhhhhhhcCC-------CCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHH
Q 044627 186 SEDLVGVDSHIQRINSLLCIGL-------PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEH 258 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (524)
...++|.+..++.+...+.... ....++.+.|++|+|||+||+.++..+...-...+.++ .+....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d----~s~~~~--- 636 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID----MSEYME--- 636 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe----chhhcc---
Confidence 4568999999999988886521 12457889999999999999999997654433333333 221111
Q ss_pred HHHHHHHHHhCCCCcc-cCCchHHHHHHhccC-CeEEEecCCCCh--hhHHHHhCCCCCC-----------CCCcEEEEe
Q 044627 259 LRDQILSQILGENIIK-TSIPPRYINKRLQQM-KVCIILDNVDKF--GHSEYLTGGLSRF-----------GHGSRVIVT 323 (524)
Q Consensus 259 l~~~ll~~l~~~~~~~-~~~~~~~l~~~L~~~-~~LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~IIiT 323 (524)
......+.+..+.. .......+.+.++.+ ..+|+||+++.. +....|+..+... -..+-||+|
T Consensus 637 --~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 637 --KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred --cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 01112222222221 111112344444333 458999999743 3444444433211 123447777
Q ss_pred cCC
Q 044627 324 TRD 326 (524)
Q Consensus 324 TR~ 326 (524)
|.-
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
No 152
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.56 E-value=0.0013 Score=74.23 Aligned_cols=115 Identities=13% Similarity=0.159 Sum_probs=64.6
Q ss_pred CCCccchhhhHHhhhhhhhcC-------CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHH
Q 044627 186 SEDLVGVDSHIQRINSLLCIG-------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEH 258 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (524)
...++|.+.-++.+...+... .....++.++|++|+|||+||+.+++.+...-...+.+. .+...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id----~se~~---- 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID----MSEFM---- 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE----hHHhh----
Confidence 356899999999988887642 112347889999999999999999987643333333333 11100
Q ss_pred HHHHHHHHHhCCCCcc-cCCchHHHHHHhccC-CeEEEecCCC--ChhhHHHHhC
Q 044627 259 LRDQILSQILGENIIK-TSIPPRYINKRLQQM-KVCIILDNVD--KFGHSEYLTG 309 (524)
Q Consensus 259 l~~~ll~~l~~~~~~~-~~~~~~~l~~~L~~~-~~LlVlDdv~--~~~~~~~l~~ 309 (524)
.......+.+..+.. .......+.+.++.+ .-+|+||+++ +++....|+.
T Consensus 639 -~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ 692 (857)
T PRK10865 639 -EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQ 692 (857)
T ss_pred -hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHH
Confidence 011122233333211 111112334444333 4699999997 4444555544
No 153
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0012 Score=67.64 Aligned_cols=130 Identities=16% Similarity=0.151 Sum_probs=74.1
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhc
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQ 287 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~ 287 (524)
.....+.+.|++|+|||+||..++.. ..|+-+--++ ...--++.+-.+- ..........-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS----pe~miG~sEsaKc-------------~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS----PEDMIGLSESAKC-------------AHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC----hHHccCccHHHHH-------------HHHHHHHHHhhc
Confidence 34677889999999999999998864 4576443333 1110111111100 000111122223
Q ss_pred cCCeEEEecCCCChhh------------HHHH---hCCCCCCCCCcEEEEecCChhhhhhcC----CCeEEEcCCCCH-H
Q 044627 288 QMKVCIILDNVDKFGH------------SEYL---TGGLSRFGHGSRVIVTTRDKKVLDKYG----VDYVYKVEGFNY-R 347 (524)
Q Consensus 288 ~~~~LlVlDdv~~~~~------------~~~l---~~~~~~~~~gs~IIiTTR~~~~~~~~~----~~~~~~l~~L~~-~ 347 (524)
..=-.||+||++..-+ ++.| +...+..+..-.|+-||....++..++ ....|.|+.++. +
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 4456899999964322 3333 333332233334555777788888776 356789999987 6
Q ss_pred HHHHHHHHh
Q 044627 348 ESLEIFCYY 356 (524)
Q Consensus 348 ea~~L~~~~ 356 (524)
+..+.++..
T Consensus 677 ~~~~vl~~~ 685 (744)
T KOG0741|consen 677 QLLEVLEEL 685 (744)
T ss_pred HHHHHHHHc
Confidence 777777654
No 154
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.54 E-value=0.0018 Score=72.70 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=40.8
Q ss_pred CCccchhhhHHhhhhhhhc----CCCCceEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 187 EDLVGVDSHIQRINSLLCI----GLPDFRMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
...+|.+...+.|..++.. +....+.+.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 4588999888888876642 222345799999999999999999999876544
No 155
>PRK10536 hypothetical protein; Provisional
Probab=97.53 E-value=0.00039 Score=66.08 Aligned_cols=134 Identities=10% Similarity=0.060 Sum_probs=73.8
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhh-h-cccccceeEeeeeccccc-----ccCHHHH
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQ-I-SSQFEGRSFMANVREESK-----RVELEHL 259 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~wv~~~~~~~~-----~~~~~~l 259 (524)
..+.+|......+..+|.. ...|.+.|.+|.|||+||.+++.. + ...|..++.....-.... +.++.+-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 4567788888888888864 248999999999999999998884 3 444654444332111111 1122111
Q ss_pred ----HHHHHHHHh---CCCC-c-cc---CCch-HHHHHHhccC---CeEEEecCCCC--hhhHHHHhCCCCCCCCCcEEE
Q 044627 260 ----RDQILSQIL---GENI-I-KT---SIPP-RYINKRLQQM---KVCIILDNVDK--FGHSEYLTGGLSRFGHGSRVI 321 (524)
Q Consensus 260 ----~~~ll~~l~---~~~~-~-~~---~~~~-~~l~~~L~~~---~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~II 321 (524)
..-+...+. +... + .. ...+ -.-..+++++ .-++|+|.+.+ ..+...++.. .+.+|++|
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~v 207 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTVI 207 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEEE
Confidence 111111111 1000 0 00 0000 0012345665 45999999954 4556666644 46899999
Q ss_pred EecCCh
Q 044627 322 VTTRDK 327 (524)
Q Consensus 322 iTTR~~ 327 (524)
+|--..
T Consensus 208 ~~GD~~ 213 (262)
T PRK10536 208 VNGDIT 213 (262)
T ss_pred EeCChh
Confidence 986543
No 156
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.52 E-value=0.0002 Score=71.50 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=29.4
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..+.++|.+|+|||.||.++++.+......++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67889999999999999999998766555667776
No 157
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.52 E-value=0.0011 Score=59.27 Aligned_cols=138 Identities=16% Similarity=0.165 Sum_probs=71.8
Q ss_pred chhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc--------------------ccceeEeeeeccc
Q 044627 191 GVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ--------------------FEGRSFMANVREE 250 (524)
Q Consensus 191 GR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~--------------------f~~~~wv~~~~~~ 250 (524)
|-+...+.|.+.+..+. -...+.++|..|+||+++|..+++.+-.. ++...|+.....
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 44556666777775432 35578899999999999999999864221 233333331000
Q ss_pred ccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCC--hhhHHHHhCCCCCCCCCcEEEEecCChh
Q 044627 251 SKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDK--FGHSEYLTGGLSRFGHGSRVIVTTRDKK 328 (524)
Q Consensus 251 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiTTR~~~ 328 (524)
........+. .+...+.... ..+..=++|+|+++. .+....|+..+.....++.+|++|.+..
T Consensus 79 ~~~i~i~~ir-~i~~~~~~~~--------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 79 KKSIKIDQIR-EIIEFLSLSP--------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSBSHHHHH-HHHHHCTSS---------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred cchhhHHHHH-HHHHHHHHHH--------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 0011222221 2222211111 023456899999974 4456666665555557888888888754
Q ss_pred -hhhh-cCCCeEEEcCCCC
Q 044627 329 -VLDK-YGVDYVYKVEGFN 345 (524)
Q Consensus 329 -~~~~-~~~~~~~~l~~L~ 345 (524)
++.. ..-...+.+.+|+
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 2222 2234566666653
No 158
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.011 Score=59.42 Aligned_cols=88 Identities=11% Similarity=0.087 Sum_probs=57.5
Q ss_pred CCeEEEecCCCC--hhhHHHHhCCCCCCCCCcEEEEecCC-hhhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 044627 289 MKVCIILDNVDK--FGHSEYLTGGLSRFGHGSRVIVTTRD-KKVLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCP 364 (524)
Q Consensus 289 ~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiTTR~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 364 (524)
+.=++|+|+++. ......|+..+....+++.+|++|.+ ..++... .-...+.+.+++.++..+.+.... .+.
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~~ 207 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VAD 207 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CCh
Confidence 345888999964 44566677666655567766655554 4444332 234689999999999999987652 111
Q ss_pred ccHHHHHHHHHHHhcCChHHHH
Q 044627 365 GDLLVLSDNVVDYANGSSLALN 386 (524)
Q Consensus 365 ~~~~~~~~~i~~~~~g~PLal~ 386 (524)
...++..++|.|+...
T Consensus 208 ------~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 208 ------ADALLAEAGGAPLAAL 223 (342)
T ss_pred ------HHHHHHHcCCCHHHHH
Confidence 2235778899997443
No 159
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.51 E-value=0.00011 Score=66.78 Aligned_cols=72 Identities=22% Similarity=0.186 Sum_probs=42.9
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccC
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQM 289 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~ 289 (524)
..-+.|+|.+|+|||.||.++++....+-..+.|+. ..++...+ ..... ......+.+.+.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~----------~~~L~~~l----~~~~~---~~~~~~~~~~l~~- 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT----------ASDLLDEL----KQSRS---DGSYEELLKRLKR- 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE----------HHHHHHHH----HCCHC---CTTHCHHHHHHHT-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee----------cCceeccc----ccccc---ccchhhhcCcccc-
Confidence 356889999999999999999997655444567776 23344443 22211 1112223344443
Q ss_pred CeEEEecCCC
Q 044627 290 KVCIILDNVD 299 (524)
Q Consensus 290 ~~LlVlDdv~ 299 (524)
-=||||||+.
T Consensus 109 ~dlLilDDlG 118 (178)
T PF01695_consen 109 VDLLILDDLG 118 (178)
T ss_dssp SSCEEEETCT
T ss_pred ccEecccccc
Confidence 4578899995
No 160
>PRK06921 hypothetical protein; Provisional
Probab=97.51 E-value=0.00012 Score=71.16 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=29.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhccc-ccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQ-FEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~ 245 (524)
...+.++|.+|+|||+||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4578899999999999999999987665 44566766
No 161
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0009 Score=69.67 Aligned_cols=152 Identities=20% Similarity=0.215 Sum_probs=87.3
Q ss_pred CCCccchhhhHHhhhhhhhc----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccC
Q 044627 186 SEDLVGVDSHIQRINSLLCI----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVE 255 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (524)
...+=|.+..+.+|..++.. +-...+-|.+||++|+|||.||++++..+.--| +. ++
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----is---- 255 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----IS---- 255 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ec----
Confidence 45677999999998887643 113467789999999999999999999876433 32 11
Q ss_pred HHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh------h-------HHHHhCCCCCC------CC
Q 044627 256 LEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG------H-------SEYLTGGLSRF------GH 316 (524)
Q Consensus 256 ~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~------~-------~~~l~~~~~~~------~~ 316 (524)
..++.+.+.++.. +...+...+.-...++++++|+++... + +..|+...... +.
T Consensus 256 ----ApeivSGvSGESE---kkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 256 ----APEIVSGVSGESE---KKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ----chhhhcccCcccH---HHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 1233444433322 112222333345579999999996321 1 22233322211 22
Q ss_pred CcEEEE-ecCChhhhhh---c-CCCeEEEcCCCCHHHHHHHHHHhh
Q 044627 317 GSRVIV-TTRDKKVLDK---Y-GVDYVYKVEGFNYRESLEIFCYYA 357 (524)
Q Consensus 317 gs~IIi-TTR~~~~~~~---~-~~~~~~~l~~L~~~ea~~L~~~~~ 357 (524)
+..||- |+|...+-.. . ...+.+.+.--+...-.+++...+
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHH
Confidence 333333 4454332211 1 245678888777777667776555
No 162
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.49 E-value=0.00053 Score=67.94 Aligned_cols=118 Identities=10% Similarity=0.094 Sum_probs=64.1
Q ss_pred chhhhHHhhhhhhhcCC--CCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHh
Q 044627 191 GVDSHIQRINSLLCIGL--PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQIL 268 (524)
Q Consensus 191 GR~~el~~l~~~L~~~~--~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~ 268 (524)
+|..-+....+++..-. ...+-+.|+|..|+|||.||.++++.+...-..+.|+. ...+...+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~----------~~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH----------FPEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE----------HHHHHHHHHHHHh
Confidence 44444444455554311 13467889999999999999999998765544566665 2344444443332
Q ss_pred CCCCcccCCchHHHHHHhccCCeEEEecCCCC--hhhHH--HHhCCC-C-CCCCCcEEEEecCC
Q 044627 269 GENIIKTSIPPRYINKRLQQMKVCIILDNVDK--FGHSE--YLTGGL-S-RFGHGSRVIVTTRD 326 (524)
Q Consensus 269 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~--~~~~~--~l~~~~-~-~~~~gs~IIiTTR~ 326 (524)
.. . .....+.+. +-=||||||+.. ...|. .++..+ . ....+..+|+||.-
T Consensus 205 ~~------~-~~~~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG------S-VKEKIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC------c-HHHHHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 1 122222233 455899999942 22232 222211 1 11234557888863
No 163
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.49 E-value=0.0002 Score=73.44 Aligned_cols=104 Identities=14% Similarity=0.131 Sum_probs=65.5
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc--cccceeEeeeecccccccCHHHHHHHHH
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS--QFEGRSFMANVREESKRVELEHLRDQIL 264 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~l~~~ll 264 (524)
..+++.+..++.+...|.. .+.+.++|++|+|||++|+.+++.+.. .+..+.|+. ..+..+..++...+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHhcccC
Confidence 4578888899999888874 346788999999999999999997654 455666776 555455444433211
Q ss_pred HHHhCCCCcc--cCC-chHHHHHHhc--cCCeEEEecCCCChh
Q 044627 265 SQILGENIIK--TSI-PPRYINKRLQ--QMKVCIILDNVDKFG 302 (524)
Q Consensus 265 ~~l~~~~~~~--~~~-~~~~l~~~L~--~~~~LlVlDdv~~~~ 302 (524)
...... ... ..+.+..... +++++||+|+++...
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 010111 111 1223333322 368999999996443
No 164
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.42 E-value=0.0011 Score=66.39 Aligned_cols=144 Identities=16% Similarity=0.099 Sum_probs=82.2
Q ss_pred CccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccc---------------------cceeEeee
Q 044627 188 DLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQF---------------------EGRSFMAN 246 (524)
Q Consensus 188 ~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~wv~~ 246 (524)
.++|-+....++..+..........+.++|++|+||||+|.++++.+.... +.+..+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 356667777777777764333344689999999999999999999875433 2233333
Q ss_pred ecccccccC---HHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh--hHHHHhCCCCCCCCCcEEE
Q 044627 247 VREESKRVE---LEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG--HSEYLTGGLSRFGHGSRVI 321 (524)
Q Consensus 247 ~~~~~~~~~---~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~II 321 (524)
.+.... ..+..+.+........ ..+..-++++|+++... ....+...+......+.+|
T Consensus 81 ---~s~~~~~~i~~~~vr~~~~~~~~~~--------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 81 ---PSDLRKIDIIVEQVRELAEFLSESP--------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred ---ccccCCCcchHHHHHHHHHHhccCC--------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 121111 1222222222221110 02456789999997543 3555655555555778888
Q ss_pred EecCCh-hhhhhc-CCCeEEEcCCCCHHHH
Q 044627 322 VTTRDK-KVLDKY-GVDYVYKVEGFNYRES 349 (524)
Q Consensus 322 iTTR~~-~~~~~~-~~~~~~~l~~L~~~ea 349 (524)
++|.+. .+.... .....+++.+.+..+.
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred EEcCChhhccchhhhcceeeecCCchHHHH
Confidence 888743 232211 2345667776444333
No 165
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.40 E-value=0.00085 Score=65.15 Aligned_cols=170 Identities=16% Similarity=0.097 Sum_probs=99.0
Q ss_pred CCCCccchhhhHHhhhhhhhcC--CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHH
Q 044627 185 NSEDLVGVDSHIQRINSLLCIG--LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQ 262 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 262 (524)
+..+|+|-.++-+.+..++.+. -.+...|.|.|+.|.|||+|......+ .+.|.....+...+..-.. -.-..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~--dk~al~~ 98 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQT--DKIALKG 98 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchh--hHHHHHH
Confidence 4567999999999999988752 134567789999999999998776665 3334433333322222111 1123344
Q ss_pred HHHHHhCCCCc----c--cCCchHHHHHHhcc------CCeEEEecCCCChh----h--HHHH-hCCCCCCCCCcEEEEe
Q 044627 263 ILSQILGENII----K--TSIPPRYINKRLQQ------MKVCIILDNVDKFG----H--SEYL-TGGLSRFGHGSRVIVT 323 (524)
Q Consensus 263 ll~~l~~~~~~----~--~~~~~~~l~~~L~~------~~~LlVlDdv~~~~----~--~~~l-~~~~~~~~~gs~IIiT 323 (524)
|.+++...... . ..+....+...|+. -++++|+|.+|-.. | +..+ ...-....|-|-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 44444332221 1 34444555555543 26899999886321 1 2222 2222223467778899
Q ss_pred cCChhh-------hhhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 044627 324 TRDKKV-------LDKYGVDYVYKVEGFNYRESLEIFCYYA 357 (524)
Q Consensus 324 TR~~~~-------~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 357 (524)
||-... -....-..++-++.++-++-.++++...
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 996422 1112223366778888899999888765
No 166
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.40 E-value=0.00095 Score=75.42 Aligned_cols=132 Identities=11% Similarity=0.107 Sum_probs=73.9
Q ss_pred CCCccchhhhHHhhhhhhhcC-------CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHH
Q 044627 186 SEDLVGVDSHIQRINSLLCIG-------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEH 258 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (524)
...++|-+.-++.+...+... ......+.++|++|+|||+||+.+++.+...-...+-++ ..+.........
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~~~~~~ 586 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEKHTVSK 586 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhccccccHHH
Confidence 467899999999998877531 112346779999999999999999997644322233332 111111111111
Q ss_pred HHHHHHHHHhCCCCcc-cCCchHHHHHHhccCC-eEEEecCCCC--hhhHHHHhCCCCCC-----------CCCcEEEEe
Q 044627 259 LRDQILSQILGENIIK-TSIPPRYINKRLQQMK-VCIILDNVDK--FGHSEYLTGGLSRF-----------GHGSRVIVT 323 (524)
Q Consensus 259 l~~~ll~~l~~~~~~~-~~~~~~~l~~~L~~~~-~LlVlDdv~~--~~~~~~l~~~~~~~-----------~~gs~IIiT 323 (524)
+.+..+.. ...-...+.+.++.++ .+++||+++. ++..+.|+..+..+ ...+.+|+|
T Consensus 587 --------l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 587 --------LIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --------hcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 12222211 1111224555555554 5889999974 34455555444321 134556777
Q ss_pred cCC
Q 044627 324 TRD 326 (524)
Q Consensus 324 TR~ 326 (524)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 764
No 167
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.37 E-value=0.0027 Score=58.98 Aligned_cols=57 Identities=23% Similarity=0.235 Sum_probs=42.5
Q ss_pred CCCCCccchhhhHHhhhhhhhc--CCCCceEEEeeccccchHHHHHHHHHhhhcccccc
Q 044627 184 GNSEDLVGVDSHIQRINSLLCI--GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEG 240 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~ 240 (524)
..-..++|.|...+.|.+-... ..-...-|.+||-.|.|||.|++++.+.+....-.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 3445789998888877553322 12235678899999999999999999988877654
No 168
>PRK08118 topology modulation protein; Reviewed
Probab=97.37 E-value=0.00063 Score=61.26 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=27.2
Q ss_pred EEEeeccccchHHHHHHHHHhhhcc---cccceeEee
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISS---QFEGRSFMA 245 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~---~f~~~~wv~ 245 (524)
-|.|+|++|+||||||+.+++.+.- +++..+|-.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~ 39 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP 39 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 5789999999999999999997643 366666543
No 169
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.002 Score=67.91 Aligned_cols=171 Identities=20% Similarity=0.218 Sum_probs=91.3
Q ss_pred CccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCH
Q 044627 188 DLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVEL 256 (524)
Q Consensus 188 ~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 256 (524)
++=|-|+...+|.....- +....+-|.++|+||+|||++|+++++.-..+|-.+ ..
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---------kg---- 501 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---------KG---- 501 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---------cC----
Confidence 344466666666643321 334578899999999999999999999877665321 00
Q ss_pred HHHHHHHHHHHhCCCCcccCCchHHH-HHHhccCCeEEEecCCCChh-------------hHHHHhCCCCCCCCCcEEEE
Q 044627 257 EHLRDQILSQILGENIIKTSIPPRYI-NKRLQQMKVCIILDNVDKFG-------------HSEYLTGGLSRFGHGSRVIV 322 (524)
Q Consensus 257 ~~l~~~ll~~l~~~~~~~~~~~~~~l-~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~gs~IIi 322 (524)
.+++....+..+ ..+..+ ++.-+-.+.+|.||.++... .+..++..++.......|+|
T Consensus 502 ----pEL~sk~vGeSE----r~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 502 ----PELFSKYVGESE----RAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred ----HHHHHHhcCchH----HHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 011222212111 111111 11222357899999886321 14445555543333323333
Q ss_pred ---ecCChhhhhh-c---CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh
Q 044627 323 ---TTRDKKVLDK-Y---GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 323 ---TTR~~~~~~~-~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (524)
|-|...+-.. + .....+.++.-+.+.-.++|+.++-+-.-.+. -...+|++.+.|.-
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED---VDLEELAQATEGYS 637 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHhccCC
Confidence 3333322111 1 24567888888888888999988744332221 11345555555543
No 170
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0014 Score=71.50 Aligned_cols=117 Identities=12% Similarity=0.151 Sum_probs=75.3
Q ss_pred CCCccchhhhHHhhhhhhhc-------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHH
Q 044627 186 SEDLVGVDSHIQRINSLLCI-------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEH 258 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~-------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (524)
....+|-+.-+..+.+.+.. +..+..+....|+.|||||-||++++..+.+.=+..+-++ +.+
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D----------MSE 559 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID----------MSE 559 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec----------hHH
Confidence 35789999999988887754 2233567888999999999999999997754323333333 222
Q ss_pred HH-HHHHHHHhCCCCcc-cCCchHHHHHHhccCCe-EEEecCCC--ChhhHHHHhCCCC
Q 044627 259 LR-DQILSQILGENIIK-TSIPPRYINKRLQQMKV-CIILDNVD--KFGHSEYLTGGLS 312 (524)
Q Consensus 259 l~-~~ll~~l~~~~~~~-~~~~~~~l~~~L~~~~~-LlVlDdv~--~~~~~~~l~~~~~ 312 (524)
.. +.-.+.+-+.++.. ..+--..|-+..+++++ +|.||+++ +++.++.|+..+.
T Consensus 560 y~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred HHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 22 23344455555533 11224455566677876 77899996 5566666666554
No 171
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.0019 Score=67.71 Aligned_cols=185 Identities=14% Similarity=0.061 Sum_probs=107.6
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQI 263 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 263 (524)
....++||-+.....|...+..+. -.......|+-|+||||+|+-+++.+-..-. . ...+.+-....+.|
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~----~-----~~ePC~~C~~Ck~I 82 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENG----P-----TAEPCGKCISCKEI 82 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCC----C-----CCCcchhhhhhHhh
Confidence 345678999999999999998643 2456678999999999999999985422100 0 00000111111111
Q ss_pred HHHHhCCCCcc---cCCchHHHHHHhc--------cCCeEEEecCCC--ChhhHHHHhCCCCCCCCCcEEEEecCChh-h
Q 044627 264 LSQILGENIIK---TSIPPRYINKRLQ--------QMKVCIILDNVD--KFGHSEYLTGGLSRFGHGSRVIVTTRDKK-V 329 (524)
Q Consensus 264 l~~l~~~~~~~---~~~~~~~l~~~L~--------~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IIiTTR~~~-~ 329 (524)
...-.....++ ....++.+++... ++.=+.|+|.|. +...+..|+..+....+....|+.|.+++ +
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 11100000011 3334455554442 344478999995 55668888887775556666666665543 3
Q ss_pred hhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcC
Q 044627 330 LDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANG 380 (524)
Q Consensus 330 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g 380 (524)
... ......|.+..++.++-...+...+....- ...++...-|++..+|
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I--~~e~~aL~~ia~~a~G 212 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI--NIEEDALSLIARAAEG 212 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCC--ccCHHHHHHHHHHcCC
Confidence 221 233567899999999888887776543321 1224445566666665
No 172
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.31 E-value=0.00072 Score=64.12 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=36.8
Q ss_pred hhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 199 INSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 199 l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
|.++|..+-....++.|+|.+|+|||+||.+++.........++|++
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44555444445779999999999999999999987655566788887
No 173
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.27 E-value=0.0031 Score=59.10 Aligned_cols=168 Identities=19% Similarity=0.152 Sum_probs=98.2
Q ss_pred CCccchhhhHH---hhhhhhhcC----CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHH
Q 044627 187 EDLVGVDSHIQ---RINSLLCIG----LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHL 259 (524)
Q Consensus 187 ~~~vGR~~el~---~l~~~L~~~----~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 259 (524)
++.||-+.-.. -|...|..+ ...++-|..+|++|.|||.+|+++++...--| +-+. .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~---l~vk-------------a 184 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL---LLVK-------------A 184 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce---EEec-------------h
Confidence 56888776554 345566542 24488999999999999999999999765332 1111 1
Q ss_pred HHHHHHHHhCCCCcccCCchHHHHHHh----ccCCeEEEecCCCCh--------------hhHHHHhCCCCCC--CCCcE
Q 044627 260 RDQILSQILGENIIKTSIPPRYINKRL----QQMKVCIILDNVDKF--------------GHSEYLTGGLSRF--GHGSR 319 (524)
Q Consensus 260 ~~~ll~~l~~~~~~~~~~~~~~l~~~L----~~~~~LlVlDdv~~~--------------~~~~~l~~~~~~~--~~gs~ 319 (524)
..-|...++ +....+++.. +..++++.+|.++.. +.+.+|+..+... +.|..
T Consensus 185 t~liGehVG--------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 185 TELIGEHVG--------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHHHHHHhh--------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 111111111 2233333322 235899999988632 2355565554432 34666
Q ss_pred EEEecCChhhhhhc---CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC
Q 044627 320 VIVTTRDKKVLDKY---GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS 381 (524)
Q Consensus 320 IIiTTR~~~~~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 381 (524)
.|..|.++.++... .....++...-+.+|-.+++..++-.-..+. ....+.++.+.+|+
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv---~~~~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV---DADLRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc---ccCHHHHHHHhCCC
Confidence 66667766655432 2345677777889999999988874322221 11245666666664
No 174
>PRK07261 topology modulation protein; Provisional
Probab=97.26 E-value=0.0012 Score=59.78 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.6
Q ss_pred EEEeeccccchHHHHHHHHHhhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 175
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.26 E-value=0.0013 Score=59.23 Aligned_cols=45 Identities=24% Similarity=0.183 Sum_probs=34.1
Q ss_pred ccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhh
Q 044627 189 LVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 189 ~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
+||.+..++++.+.+..-......|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888888763333456779999999999999999884
No 176
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.0015 Score=63.07 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=47.2
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQ 288 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~ 288 (524)
...-+.++|.+|+|||.||.++++++...--.+.|+. ..++...+...... ......+.+.+.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~----------~~el~~~Lk~~~~~------~~~~~~l~~~l~~ 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT----------APDLLSKLKAAFDE------GRLEEKLLRELKK 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhc------CchHHHHHHHhhc
Confidence 4557889999999999999999999874444566665 34455554444332 1122233332332
Q ss_pred CCeEEEecCCC
Q 044627 289 MKVCIILDNVD 299 (524)
Q Consensus 289 ~~~LlVlDdv~ 299 (524)
-=||||||+.
T Consensus 168 -~dlLIiDDlG 177 (254)
T COG1484 168 -VDLLIIDDIG 177 (254)
T ss_pred -CCEEEEeccc
Confidence 3389999994
No 177
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.25 E-value=0.00068 Score=76.38 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=40.3
Q ss_pred CCCccchhhhHHhhhhhhhc-------CCCCceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 186 SEDLVGVDSHIQRINSLLCI-------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~-------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
...++|-+.-++.+.+.+.. +.....++.++|++|+|||.||+.+++.+...
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 35789999999988887743 11234578999999999999999999876443
No 178
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.24 E-value=0.0066 Score=62.98 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=28.0
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.+.+|.++|.+|+||||+|..++..+...-..+..++
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~ 130 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVA 130 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEec
Confidence 4678999999999999999999987765422334343
No 179
>PHA00729 NTP-binding motif containing protein
Probab=97.22 E-value=0.00057 Score=63.91 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.4
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+...|.|+|.+|+||||||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345788999999999999999999764
No 180
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0017 Score=67.67 Aligned_cols=128 Identities=22% Similarity=0.245 Sum_probs=77.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHh-cc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRL-QQ 288 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L-~~ 288 (524)
..-|.+||++|+|||-||+++++.-+-+| +. +- + . +|+....++. +.....+..+- ..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is----VK---G-P----ELlNkYVGES----ErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS----VK---G-P----ELLNKYVGES----ERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee----ec---C-H----HHHHHHhhhH----HHHHHHHHHHhhcC
Confidence 45678999999999999999999887765 33 10 1 1 1222222221 12222233332 34
Q ss_pred CCeEEEecCCCCh-------------hhHHHHhCCCCCCC--CCcEEEEecCChhhhhh-----cCCCeEEEcCCCCHHH
Q 044627 289 MKVCIILDNVDKF-------------GHSEYLTGGLSRFG--HGSRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRE 348 (524)
Q Consensus 289 ~~~LlVlDdv~~~-------------~~~~~l~~~~~~~~--~gs~IIiTTR~~~~~~~-----~~~~~~~~l~~L~~~e 348 (524)
.+++|.||.++.. ..+..|+..+.... .|..||-.|..+++... -......-|+.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 6999999999632 12455555554332 35566766654444221 1245677888889999
Q ss_pred HHHHHHHhhh
Q 044627 349 SLEIFCYYAF 358 (524)
Q Consensus 349 a~~L~~~~~~ 358 (524)
-..+++...-
T Consensus 684 R~~ILK~~tk 693 (802)
T KOG0733|consen 684 RVAILKTITK 693 (802)
T ss_pred HHHHHHHHhc
Confidence 9999987764
No 181
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.21 E-value=0.0044 Score=57.23 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=62.2
Q ss_pred CCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc-cc-cceeEeeeecccccccCHHHHHHH
Q 044627 185 NSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS-QF-EGRSFMANVREESKRVELEHLRDQ 262 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f-~~~~wv~~~~~~~~~~~~~~l~~~ 262 (524)
.-.++||-++-++.+.-.-.+ .+.+-+.|.||+|+||||-+..+++.+-+ .| +++.=+. .|+..++.-+...
T Consensus 25 ~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN----ASdeRGIDvVRn~ 98 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN----ASDERGIDVVRNK 98 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc----CccccccHHHHHH
Confidence 345689999998888766554 34778889999999999999999997543 33 3333333 4444454444444
Q ss_pred HHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh
Q 044627 263 ILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG 302 (524)
Q Consensus 263 ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~ 302 (524)
|-........ .-.++.-++|||.+++..
T Consensus 99 IK~FAQ~kv~------------lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 99 IKMFAQKKVT------------LPPGRHKIIILDEADSMT 126 (333)
T ss_pred HHHHHHhhcc------------CCCCceeEEEeeccchhh
Confidence 3222111000 002344578999998654
No 182
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.20 E-value=0.001 Score=62.25 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=34.8
Q ss_pred hhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 203 LCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 203 L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
|..+-....++.|+|.+|+|||+||.+++......-..++|++
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4334445789999999999999999999887765566788988
No 183
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.19 E-value=0.00082 Score=62.37 Aligned_cols=110 Identities=14% Similarity=0.098 Sum_probs=62.8
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCC
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMK 290 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~ 290 (524)
.+|.|.|+.|+||||++..++..+.......++.. .........-...+..+. ..........+.++..|+..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~----e~~~E~~~~~~~~~i~q~--~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI----EDPIEFVHESKRSLINQR--EVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEE----cCCccccccCccceeeec--ccCCCccCHHHHHHHHhcCCc
Confidence 46889999999999999998887765444444433 111000000000000000 000012345566777788788
Q ss_pred eEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCChhh
Q 044627 291 VCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKV 329 (524)
Q Consensus 291 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~ 329 (524)
=++++|++.+.+.+...+.... .|..++.|+-....
T Consensus 76 d~ii~gEird~e~~~~~l~~a~---~G~~v~~t~Ha~~~ 111 (198)
T cd01131 76 DVILVGEMRDLETIRLALTAAE---TGHLVMSTLHTNSA 111 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHHHH---cCCEEEEEecCCcH
Confidence 8999999988777665444322 35567777765544
No 184
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.0069 Score=60.59 Aligned_cols=86 Identities=10% Similarity=0.052 Sum_probs=48.8
Q ss_pred CeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCChh-hhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCc
Q 044627 290 KVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKK-VLDKY-GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPG 365 (524)
Q Consensus 290 ~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~ 365 (524)
+-++|+|+++.. .....++..+.....++.+|++|.+.. +.... .....+.+.+++.+++.+.+.... . ..
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~~ 188 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V-AE 188 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C-Cc
Confidence 335566888643 334444443333334566777777654 33221 234578999999999998886541 1 11
Q ss_pred cHHHHHHHHHHHhcCChHHH
Q 044627 366 DLLVLSDNVVDYANGSSLAL 385 (524)
Q Consensus 366 ~~~~~~~~i~~~~~g~PLal 385 (524)
. ...+..++|-|+..
T Consensus 189 --~---~~~l~~~~g~p~~~ 203 (325)
T PRK08699 189 --P---EERLAFHSGAPLFD 203 (325)
T ss_pred --H---HHHHHHhCCChhhh
Confidence 1 11235688999643
No 185
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.18 E-value=0.0005 Score=64.97 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=29.8
Q ss_pred EEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.++|.|..|+|||||...+...+...|..++.+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5678999999999999999999999997777665
No 186
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.17 E-value=0.0017 Score=57.69 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=27.6
Q ss_pred EEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
++.|+|.+|+||||++..++......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3679999999999999999997765545566766
No 187
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.14 E-value=0.013 Score=62.37 Aligned_cols=201 Identities=12% Similarity=0.148 Sum_probs=118.6
Q ss_pred CCCCccchhhhHHhhhhhhhc--CC-CCceEEEeeccccchHHHHHHHHHhhhc-----ccccc--eeEeeeeccccccc
Q 044627 185 NSEDLVGVDSHIQRINSLLCI--GL-PDFRMVRPWDMHGIAKTDIARAILNQIS-----SQFEG--RSFMANVREESKRV 254 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~--~~-~~~~~v~I~G~gGiGKTtLA~~~~~~~~-----~~f~~--~~wv~~~~~~~~~~ 254 (524)
.+..+-+||.|..+|.+++.. .. .....+=|.|-+|.|||+++..+.+.+. ..-+. .+.+... .-.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm----~l~ 469 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGL----RLA 469 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcce----eec
Confidence 567788999999999998875 22 2244778999999999999999998553 22232 3334422 234
Q ss_pred CHHHHHHHHHHHHhCCCCcccCCchHHHHHHhc-----cCCeEEEecCCCChhh--HHHHhCCCCCCC-CCcEEEEec-C
Q 044627 255 ELEHLRDQILSQILGENIIKTSIPPRYINKRLQ-----QMKVCIILDNVDKFGH--SEYLTGGLSRFG-HGSRVIVTT-R 325 (524)
Q Consensus 255 ~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~-----~~~~LlVlDdv~~~~~--~~~l~~~~~~~~-~gs~IIiTT-R 325 (524)
...+++..|...+.+.... .....+.|..+.. .+.+++++|+++..-. -+-+...+.|.. ++++++|-+ -
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~-~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVT-WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred CHHHHHHHHHHhcccCccc-HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 5788888888888766531 2234455555554 3478888998864322 222333344433 477765533 2
Q ss_pred Ch----------hhhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCC-CCCccHHHHHHHHHHHhcCChHHHHHHHHH
Q 044627 326 DK----------KVLDKYGVDYVYKVEGFNYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSSLALNVLRSS 391 (524)
Q Consensus 326 ~~----------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 391 (524)
|- .+...+| ...+...+.+..+-.++...+..+.. -.....+-+++.++.-.|..-.|+.+.-+.
T Consensus 549 NTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 11 1111122 23567778888877777766543322 112223334566666666666666555433
No 188
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.14 E-value=0.0014 Score=60.63 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=59.4
Q ss_pred hhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh--cccccceeEeeeeccccccc-----CHHH----HHHH
Q 044627 194 SHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI--SSQFEGRSFMANVREESKRV-----ELEH----LRDQ 262 (524)
Q Consensus 194 ~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~--~~~f~~~~wv~~~~~~~~~~-----~~~~----l~~~ 262 (524)
.+-....+.|. ...++.+.|++|.|||.||.+.+-+. ...|+.+++....-...... ++.+ ...-
T Consensus 7 ~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p 82 (205)
T PF02562_consen 7 EEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRP 82 (205)
T ss_dssp HHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHH
T ss_pred HHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHH
Confidence 34444555554 24589999999999999998887642 46688777775432211110 1000 1111
Q ss_pred HHHHHhCCCCcccCCchHHHH----------HHhccC---CeEEEecCCC--ChhhHHHHhCCCCCCCCCcEEEEecCC
Q 044627 263 ILSQILGENIIKTSIPPRYIN----------KRLQQM---KVCIILDNVD--KFGHSEYLTGGLSRFGHGSRVIVTTRD 326 (524)
Q Consensus 263 ll~~l~~~~~~~~~~~~~~l~----------~~L~~~---~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IIiTTR~ 326 (524)
+...+..-. .....+.+. .+++++ +.++|+|++- +..++..++.. .+.+|++|++--.
T Consensus 83 ~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~ 155 (205)
T PF02562_consen 83 IYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE--
T ss_pred HHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCc
Confidence 111111100 111122221 233443 6789999994 55677777655 4689999998654
No 189
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.13 E-value=0.00033 Score=59.23 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=21.5
Q ss_pred EEEeeccccchHHHHHHHHHhhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999976
No 190
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0099 Score=63.27 Aligned_cols=160 Identities=13% Similarity=0.111 Sum_probs=84.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccc-cceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhcc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQF-EGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQ 288 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~ 288 (524)
.+.|.|.|..|+|||+||+++++.+...- -.+.+++ +. ......+.++++.+- ....+.+..
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~-Cs-~l~~~~~e~iQk~l~---------------~vfse~~~~ 493 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVS-CS-TLDGSSLEKIQKFLN---------------NVFSEALWY 493 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEe-ch-hccchhHHHHHHHHH---------------HHHHHHHhh
Confidence 56788999999999999999999876432 2233333 11 111223444444432 234556677
Q ss_pred CCeEEEecCCCChh--------h-------HHHHh-CCCCC-CCCCc--EEEEecCChhh-----hhhcCCCeEEEcCCC
Q 044627 289 MKVCIILDNVDKFG--------H-------SEYLT-GGLSR-FGHGS--RVIVTTRDKKV-----LDKYGVDYVYKVEGF 344 (524)
Q Consensus 289 ~~~LlVlDdv~~~~--------~-------~~~l~-~~~~~-~~~gs--~IIiTTR~~~~-----~~~~~~~~~~~l~~L 344 (524)
.+-++||||++-.- + +..++ ..... ...+. .+|.|...... ....-.+....++.+
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 89999999995221 1 11111 00000 11233 34555443221 111123456789999
Q ss_pred CHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC-hHHHHHH
Q 044627 345 NYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS-SLALNVL 388 (524)
Q Consensus 345 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 388 (524)
...+-.++++....... .... .+...-+..+|+|. |.-+.++
T Consensus 574 ~~~~R~~IL~~~~s~~~-~~~~-~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 574 AVTRRKEILTTIFSKNL-SDIT-MDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred chhHHHHHHHHHHHhhh-hhhh-hHHHHHHHHhcCCccchhHHHH
Confidence 88888777765542221 1111 22233367777764 4444443
No 191
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.012 Score=59.45 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=28.5
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..++|+|+|++|+||||++..++..+..+-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3579999999999999999999887654433445554
No 192
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.11 E-value=0.00036 Score=60.74 Aligned_cols=46 Identities=22% Similarity=0.115 Sum_probs=33.8
Q ss_pred cchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 190 VGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 190 vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
||....++++.+.+..-......|.|+|..|+||+++|+.++..-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 5777788888887766333456788999999999999998877543
No 193
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0025 Score=67.72 Aligned_cols=157 Identities=23% Similarity=0.256 Sum_probs=89.9
Q ss_pred CCccchhhhHHhhhhhhhc----CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHH
Q 044627 187 EDLVGVDSHIQRINSLLCI----GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQ 262 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 262 (524)
++-+|.++..++|.+++.- ++-+.++++.+|++|||||.+|+.+++-+...|- -..++..++...
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf----RfSvGG~tDvAe------- 479 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF----RFSVGGMTDVAE------- 479 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE----EEeccccccHHh-------
Confidence 5678999999999998864 3446789999999999999999999998766542 222222221111
Q ss_pred HHHHHhCCCCcccCCchHHHHHHhc---cCCeEEEecCCCChhh----------HHHHhCCC---------CCCCCCcEE
Q 044627 263 ILSQILGENIIKTSIPPRYINKRLQ---QMKVCIILDNVDKFGH----------SEYLTGGL---------SRFGHGSRV 320 (524)
Q Consensus 263 ll~~l~~~~~~~~~~~~~~l~~~L~---~~~~LlVlDdv~~~~~----------~~~l~~~~---------~~~~~gs~I 320 (524)
+.+.........-..+.+.|+ ..+-|+.||.|+.... ++.|.+.- +-.-.-|+|
T Consensus 480 ----IkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 480 ----IKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ----hcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 111111112223334444443 3577888999964321 22221111 000113555
Q ss_pred EE-ecCCh-h-h-hhhcCCCeEEEcCCCCHHHHHHHHHHhhh
Q 044627 321 IV-TTRDK-K-V-LDKYGVDYVYKVEGFNYRESLEIFCYYAF 358 (524)
Q Consensus 321 Ii-TTR~~-~-~-~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 358 (524)
++ .|-|. + + ....+.-..+++.+...+|-+.+-.++..
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 53 34331 0 0 11112336789999999998887776653
No 194
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.08 E-value=0.004 Score=66.73 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=38.5
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhh
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
...+.++|.+..++.+...+... ....+.|+|.+|+|||++|+.+++.
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 33456999999999998877543 2346789999999999999998764
No 195
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.07 E-value=0.0053 Score=67.35 Aligned_cols=130 Identities=21% Similarity=0.183 Sum_probs=72.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccC
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQM 289 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~ 289 (524)
.+-|.|+|++|+|||++|+.++......| +.+. . ..+... ..+.. .......+.......
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is----~------~~~~~~----~~g~~---~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS----G------SDFVEM----FVGVG---ASRVRDMFEQAKKAA 244 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe----h------HHhHHh----hhccc---HHHHHHHHHHHHhcC
Confidence 34588999999999999999998765443 1122 0 011100 00000 001111222223346
Q ss_pred CeEEEecCCCChh----------------hHHHHhCCCCCCC--CCcEEEEecCChhhhhhc-----CCCeEEEcCCCCH
Q 044627 290 KVCIILDNVDKFG----------------HSEYLTGGLSRFG--HGSRVIVTTRDKKVLDKY-----GVDYVYKVEGFNY 346 (524)
Q Consensus 290 ~~LlVlDdv~~~~----------------~~~~l~~~~~~~~--~gs~IIiTTR~~~~~~~~-----~~~~~~~l~~L~~ 346 (524)
+++|++|+++... .+..++..+..+. .+.-+|.||..+..+... .....+.++..+.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 8899999996431 1233333333222 244555677765433221 2456788999998
Q ss_pred HHHHHHHHHhhhc
Q 044627 347 RESLEIFCYYAFR 359 (524)
Q Consensus 347 ~ea~~L~~~~~~~ 359 (524)
++-.+++..+...
T Consensus 325 ~~R~~Il~~~~~~ 337 (644)
T PRK10733 325 RGREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHHhhc
Confidence 8888888877643
No 196
>PRK04296 thymidine kinase; Provisional
Probab=97.06 E-value=0.00087 Score=61.75 Aligned_cols=109 Identities=12% Similarity=0.006 Sum_probs=58.7
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc----cCCchHHHHHHh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK----TSIPPRYINKRL 286 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~----~~~~~~~l~~~L 286 (524)
.++.|+|..|.||||+|..++.+...+...++++... ....... ..+..+++...... ..+....+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~~~~----~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDRYGE----GKVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--ccccccC----CcEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 4678999999999999999999876555444444210 0111111 12223332111110 1122222222 2
Q ss_pred ccCCeEEEecCCCC--hhhHHHHhCCCCCCCCCcEEEEecCChh
Q 044627 287 QQMKVCIILDNVDK--FGHSEYLTGGLSRFGHGSRVIVTTRDKK 328 (524)
Q Consensus 287 ~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiTTR~~~ 328 (524)
.++.-+||+|.+.- .+++..+...+. ..|..||+|.++..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 23456899999943 343444443322 35788999998743
No 197
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.05 E-value=0.0005 Score=68.67 Aligned_cols=51 Identities=12% Similarity=0.202 Sum_probs=42.6
Q ss_pred CCCccchhhhHHhhhhhhhcC----CCCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 186 SEDLVGVDSHIQRINSLLCIG----LPDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~----~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
.+.++|.++.++++.+++... ....++++|+|++|+||||||..+++.+..
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 347999999999999998762 224688999999999999999999997644
No 198
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.05 E-value=0.002 Score=60.71 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=36.9
Q ss_pred HhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 197 QRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..|..+|..+-....++.|+|.+|+||||||.+++.....+-..++|++
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555544455789999999999999999999987755555677776
No 199
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.03 E-value=0.0027 Score=70.43 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=39.7
Q ss_pred CCCccchhhhHHhhhhhhhcC-------CCCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 186 SEDLVGVDSHIQRINSLLCIG-------LPDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...++|-+..++.|...+... ......+.++|++|+|||+||+.++..+.
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999988887631 12245788999999999999999998774
No 200
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.02 E-value=0.0017 Score=61.52 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=35.5
Q ss_pred hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccc------cceeEee
Q 044627 198 RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQF------EGRSFMA 245 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~wv~ 245 (524)
.|..+|..+-....++.|+|.+|+|||+||.+++....... ..++|++
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 34445544444567999999999999999999987654444 5678887
No 201
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.02 E-value=0.0017 Score=69.00 Aligned_cols=74 Identities=19% Similarity=0.366 Sum_probs=53.4
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHh-
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRL- 286 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L- 286 (524)
+..++..++|++|.||||||..++++.. |. ++=+. +|...+...+-..|...+..... +
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--Ys-VvEIN----ASDeRt~~~v~~kI~~avq~~s~-------------l~ 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--YS-VVEIN----ASDERTAPMVKEKIENAVQNHSV-------------LD 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--ce-EEEec----ccccccHHHHHHHHHHHHhhccc-------------cc
Confidence 4578999999999999999999998754 22 33344 56666667776777666554332 2
Q ss_pred -ccCCeEEEecCCCCh
Q 044627 287 -QQMKVCIILDNVDKF 301 (524)
Q Consensus 287 -~~~~~LlVlDdv~~~ 301 (524)
..++..||+|.++..
T Consensus 384 adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGA 399 (877)
T ss_pred cCCCcceEEEecccCC
Confidence 257889999999754
No 202
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0089 Score=64.94 Aligned_cols=176 Identities=18% Similarity=0.145 Sum_probs=100.3
Q ss_pred CCCccchhhhHH---hhhhhhhcCC-------CCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccC
Q 044627 186 SEDLVGVDSHIQ---RINSLLCIGL-------PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVE 255 (524)
Q Consensus 186 ~~~~vGR~~el~---~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (524)
..++.|-++..+ ++.++|..+. .-++=+.|+|++|.|||-||++++-.-. +=|+. ++.
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~s----vSG--- 377 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS----VSG--- 377 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceee----ech---
Confidence 456888766555 4555664421 2367788999999999999999988643 22333 111
Q ss_pred HHHHHHHHHHHHhCCCCcccCCchHHHHHH-hccCCeEEEecCCCCh-----------------hhHHHHhCCCCCCCCC
Q 044627 256 LEHLRDQILSQILGENIIKTSIPPRYINKR-LQQMKVCIILDNVDKF-----------------GHSEYLTGGLSRFGHG 317 (524)
Q Consensus 256 ~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~-L~~~~~LlVlDdv~~~-----------------~~~~~l~~~~~~~~~g 317 (524)
.++...+ .+. -......+... -.+.++++.+|+++.. ..+..++.....+..+
T Consensus 378 -SEFvE~~----~g~----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 378 -SEFVEMF----VGV----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred -HHHHHHh----ccc----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 1111111 110 00111112222 2345788888887532 1245555555544443
Q ss_pred c--EEEEecCChhhhhhc-----CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHH
Q 044627 318 S--RVIVTTRDKKVLDKY-----GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (524)
Q Consensus 318 s--~IIiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 384 (524)
. -+|-+|+..+++... ...+.+.++.-+.....++|..++-..... .+..++.. |+...-|++=|
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 3 334456555544321 245678888888889999999887544432 34455555 88888888754
No 203
>PRK06696 uridine kinase; Validated
Probab=96.98 E-value=0.00098 Score=63.12 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=35.9
Q ss_pred hhhhHHhhhhhhhc-CCCCceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 192 VDSHIQRINSLLCI-GLPDFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 192 R~~el~~l~~~L~~-~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
|.+.+++|.+.+.. ......+|+|.|.+|+||||||+.++..+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 56666777666654 33457899999999999999999999987543
No 204
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0017 Score=70.73 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=83.5
Q ss_pred CCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc-ccc-----ceeEeeeecccccccCHHHH
Q 044627 186 SEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS-QFE-----GRSFMANVREESKRVELEHL 259 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~-----~~~wv~~~~~~~~~~~~~~l 259 (524)
-++.+||+.|+.++.+.|.....+-+ .++|.+|+|||+++.-++.++.. +.+ ..++--++ ..+
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~---------g~L 237 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL---------GSL 237 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH---------HHH
Confidence 35699999999999999987442222 26799999999999999997543 222 12222211 111
Q ss_pred HHHHHHHHhCCCC-cccCCchHHHHHHh-ccCCeEEEecCCCC-----------hhhHHHHhCCCCCCCCCcEEEEecCC
Q 044627 260 RDQILSQILGENI-IKTSIPPRYINKRL-QQMKVCIILDNVDK-----------FGHSEYLTGGLSRFGHGSRVIVTTRD 326 (524)
Q Consensus 260 ~~~ll~~l~~~~~-~~~~~~~~~l~~~L-~~~~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~gs~IIiTTR~ 326 (524)
+.+..- ...++....+.+.+ +..+++|.+|.+.. .+....+.+.+.. +.--.|=.||-+
T Consensus 238 -------vAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~ 309 (786)
T COG0542 238 -------VAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLD 309 (786)
T ss_pred -------hccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHH
Confidence 111111 00111122222222 33489999999842 2223334444431 112234456644
Q ss_pred hhh--h-h---hcCCCeEEEcCCCCHHHHHHHHHHh
Q 044627 327 KKV--L-D---KYGVDYVYKVEGFNYRESLEIFCYY 356 (524)
Q Consensus 327 ~~~--~-~---~~~~~~~~~l~~L~~~ea~~L~~~~ 356 (524)
+-- . . ...-.+.+.|...+.+++..++...
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 311 0 0 0112357889999999999988754
No 205
>PRK07667 uridine kinase; Provisional
Probab=96.97 E-value=0.0013 Score=60.84 Aligned_cols=42 Identities=5% Similarity=0.022 Sum_probs=32.8
Q ss_pred HHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 196 IQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
++++.+.+....+...+|+|.|.+|+||||+|..+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345566666555556899999999999999999999876543
No 206
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.96 E-value=0.0038 Score=63.54 Aligned_cols=95 Identities=11% Similarity=0.080 Sum_probs=57.0
Q ss_pred HhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc--
Q 044627 197 QRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK-- 274 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-- 274 (524)
.++.+.|..+-....++.|.|.+|+|||||+.+++......-..++|+. .. .....+... ...++....+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs----~E--Es~~qi~~R-a~rlg~~~~~l~l 141 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS----GE--ESPEQIKLR-ADRLGISTENLYL 141 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE----CC--cCHHHHHHH-HHHcCCCcccEEE
Confidence 3444555444344679999999999999999999987766555677776 21 222332221 23333222222
Q ss_pred -cCCchHHHHHHhc-cCCeEEEecCC
Q 044627 275 -TSIPPRYINKRLQ-QMKVCIILDNV 298 (524)
Q Consensus 275 -~~~~~~~l~~~L~-~~~~LlVlDdv 298 (524)
.....+.+.+.+. .+.-+||+|.+
T Consensus 142 ~~e~~le~I~~~i~~~~~~lVVIDSI 167 (372)
T cd01121 142 LAETNLEDILASIEELKPDLVIIDSI 167 (372)
T ss_pred EccCcHHHHHHHHHhcCCcEEEEcch
Confidence 2233445555544 36778999998
No 207
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0037 Score=66.71 Aligned_cols=130 Identities=24% Similarity=0.193 Sum_probs=76.0
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQ 288 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~ 288 (524)
..+.+.++|++|.|||.||+++++.....|-.+..-. ++....+.. ............+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~-----------------l~sk~vGes---ek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE-----------------LLSKWVGES---EKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH-----------------HhccccchH---HHHHHHHHHHHHcC
Confidence 4568899999999999999999996665543222111 111111110 11111222233356
Q ss_pred CCeEEEecCCCCh-------------hhHHHHhCCCCCCC--CCcEEEEecCChhhhhhc-----CCCeEEEcCCCCHHH
Q 044627 289 MKVCIILDNVDKF-------------GHSEYLTGGLSRFG--HGSRVIVTTRDKKVLDKY-----GVDYVYKVEGFNYRE 348 (524)
Q Consensus 289 ~~~LlVlDdv~~~-------------~~~~~l~~~~~~~~--~gs~IIiTTR~~~~~~~~-----~~~~~~~l~~L~~~e 348 (524)
.++.|.+|+++.. ..+..++..+.... .+..||-||-.+...... .....+.+++.+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 7899999999532 12333333332222 244455566554443321 345688999999999
Q ss_pred HHHHHHHhhh
Q 044627 349 SLEIFCYYAF 358 (524)
Q Consensus 349 a~~L~~~~~~ 358 (524)
..+.|..+..
T Consensus 415 r~~i~~~~~~ 424 (494)
T COG0464 415 RLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHhc
Confidence 9999998874
No 208
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.00077 Score=58.62 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=28.4
Q ss_pred eEEEeeccccchHHHHHHHHHhhhccc-ccc-eeEeeee
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQ-FEG-RSFMANV 247 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~-~~wv~~~ 247 (524)
--|+|+|++|+|||||++.+++.++.. |.. .+|..-+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EV 44 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEV 44 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeee
Confidence 468899999999999999999987665 653 3444433
No 209
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0047 Score=61.88 Aligned_cols=95 Identities=12% Similarity=0.120 Sum_probs=62.0
Q ss_pred HHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc-
Q 044627 196 IQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK- 274 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~- 274 (524)
+.++.+.|..+-=.-.+|.|-|-+|||||||..+++.++..+. .+.+++ - ..+..++. --+..++....+.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs----G--EES~~Qik-lRA~RL~~~~~~l~ 150 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS----G--EESLQQIK-LRADRLGLPTNNLY 150 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe----C--CcCHHHHH-HHHHHhCCCccceE
Confidence 4456666654333356899999999999999999999998777 788887 1 22333222 2233444333332
Q ss_pred --cCCchHHHHHHhc-cCCeEEEecCC
Q 044627 275 --TSIPPRYINKRLQ-QMKVCIILDNV 298 (524)
Q Consensus 275 --~~~~~~~l~~~L~-~~~~LlVlDdv 298 (524)
.+.-.+.+.+.+. .++-|+|+|-+
T Consensus 151 l~aEt~~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 151 LLAETNLEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred EehhcCHHHHHHHHHhcCCCEEEEecc
Confidence 4445556666665 46889999998
No 210
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.023 Score=53.09 Aligned_cols=146 Identities=21% Similarity=0.314 Sum_probs=83.1
Q ss_pred Cccc-hhhhHHhhhhhhhcC-----------CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccC
Q 044627 188 DLVG-VDSHIQRINSLLCIG-----------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVE 255 (524)
Q Consensus 188 ~~vG-R~~el~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (524)
.+|| -+..+++|.+.+..+ -..++-+.++|++|.|||-||+++++... +.|+. +|.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-----c~fir----vsg--- 214 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFIR----VSG--- 214 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-----eEEEE----ech---
Confidence 3554 467777776655431 13467788999999999999999988443 34444 321
Q ss_pred HHHHHHHHHHHHhCCCCcccCCchHHHHHHh----ccCCeEEEecCCCChhh----------------HHHHhCCCCCC-
Q 044627 256 LEHLRDQILSQILGENIIKTSIPPRYINKRL----QQMKVCIILDNVDKFGH----------------SEYLTGGLSRF- 314 (524)
Q Consensus 256 ~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L----~~~~~LlVlDdv~~~~~----------------~~~l~~~~~~~- 314 (524)
..+.+.. ..+....+++.. .+.+.+|..|.+++... .-.++..+..+
T Consensus 215 -selvqk~-----------igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe 282 (404)
T KOG0728|consen 215 -SELVQKY-----------IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE 282 (404)
T ss_pred -HHHHHHH-----------hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc
Confidence 2222221 112333344332 34578888898864321 12233333333
Q ss_pred -CCCcEEEEecCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhh
Q 044627 315 -GHGSRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYA 357 (524)
Q Consensus 315 -~~gs~IIiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~ 357 (524)
.++.+||..|..-+++.. -...+.++.++.+.+.-.++++-+.
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 246678877654444322 1245567778877777777776554
No 211
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.91 E-value=0.0025 Score=64.02 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=60.2
Q ss_pred hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccccc-ceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc--
Q 044627 198 RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFE-GRSFMANVREESKRVELEHLRDQILSQILGENIIK-- 274 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-- 274 (524)
++.+.+..-. ...-++|+|.+|+|||||++.+++.+..+.+ ..+++..+. .......++.+.+...+.....+.
T Consensus 122 RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIg--ER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 122 RVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLID--ERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEec--CCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 4666665422 2345689999999999999999998766553 323332222 234566788888777665433211
Q ss_pred -----cCCchHHHHHHh--ccCCeEEEecCCCC
Q 044627 275 -----TSIPPRYINKRL--QQMKVCIILDNVDK 300 (524)
Q Consensus 275 -----~~~~~~~l~~~L--~~~~~LlVlDdv~~ 300 (524)
.......+.+++ .+++++||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 000111112222 46899999999953
No 212
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.91 E-value=0.013 Score=63.11 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=41.8
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.....++|....++++.+.+..-......|.|+|..|+|||++|+.+.+.-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 345689999999999998887643344567899999999999999998753
No 213
>PRK04132 replication factor C small subunit; Provisional
Probab=96.90 E-value=0.036 Score=61.89 Aligned_cols=152 Identities=12% Similarity=0.080 Sum_probs=91.1
Q ss_pred eec--cccchHHHHHHHHHhhhcc-ccc-ceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCC
Q 044627 215 PWD--MHGIAKTDIARAILNQISS-QFE-GRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMK 290 (524)
Q Consensus 215 I~G--~gGiGKTtLA~~~~~~~~~-~f~-~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~ 290 (524)
+.| +.++||||+|..+++++-. .+. ..+-++ .++..+...+.. +........+ . -..+.
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgid~IR~-iIk~~a~~~~--~----------~~~~~ 631 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELN----ASDERGINVIRE-KVKEFARTKP--I----------GGASF 631 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccHHHHHH-HHHHHHhcCC--c----------CCCCC
Confidence 346 7799999999999998633 232 234444 343334443332 2222211100 0 01235
Q ss_pred eEEEecCCCChh--hHHHHhCCCCCCCCCcEEEEecCCh-hhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcc
Q 044627 291 VCIILDNVDKFG--HSEYLTGGLSRFGHGSRVIVTTRDK-KVLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGD 366 (524)
Q Consensus 291 ~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~ 366 (524)
-++|+|+++... ....|+..+......+++|++|.+. .+... ......+++.+++.++..+.+...+...+.. -
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i 709 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--L 709 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--C
Confidence 699999997554 5666666665555677777766654 33222 1235689999999999988877665332211 1
Q ss_pred HHHHHHHHHHHhcCChHHH
Q 044627 367 LLVLSDNVVDYANGSSLAL 385 (524)
Q Consensus 367 ~~~~~~~i~~~~~g~PLal 385 (524)
..+.+..|++.++|.+...
T Consensus 710 ~~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 710 TEEGLQAILYIAEGDMRRA 728 (846)
T ss_pred CHHHHHHHHHHcCCCHHHH
Confidence 2457889999999987443
No 214
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.89 E-value=0.0021 Score=61.35 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=34.9
Q ss_pred hhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 199 INSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 199 l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
|-..|..+-+...++.|+|.+|+|||+||.+++.....+-..++|+.
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 44445444455779999999999999999999776444455677777
No 215
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.89 E-value=0.0013 Score=59.10 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=45.6
Q ss_pred EEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc-cCCchHHHHHHhcc--C
Q 044627 213 VRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK-TSIPPRYINKRLQQ--M 289 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-~~~~~~~l~~~L~~--~ 289 (524)
+.|.|.+|+|||++|.+++.. ....++++. .....+. ++.+.+........... ..+....+.+.+.. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a----t~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIA----TAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEE----ccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCC
Confidence 678999999999999999876 223566665 3333332 34444444333222222 23334455555532 2
Q ss_pred CeEEEecCC
Q 044627 290 KVCIILDNV 298 (524)
Q Consensus 290 ~~LlVlDdv 298 (524)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 447889987
No 216
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.89 E-value=0.0034 Score=61.21 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=29.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
+.+++.++|++|+||||++..++..+...-..+.+++
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4689999999999999999999887765534455555
No 217
>PRK14974 cell division protein FtsY; Provisional
Probab=96.87 E-value=0.016 Score=58.11 Aligned_cols=37 Identities=11% Similarity=-0.025 Sum_probs=27.7
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
+..+|+++|++|+||||++..++..+...-..++.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~ 175 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA 175 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 3679999999999999999988887655422344443
No 218
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.85 E-value=0.0013 Score=57.85 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=30.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..+|.|+|++|+||||||+++.+++...-..+++++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 358999999999999999999999988777777776
No 219
>PTZ00494 tuzin-like protein; Provisional
Probab=96.85 E-value=0.082 Score=53.88 Aligned_cols=203 Identities=8% Similarity=-0.008 Sum_probs=111.5
Q ss_pred HHHhcccccccCcccccchh--hhHHHHHhhccccccc-----cccCCCCCCccchhhhHHhhhhhhhcC-CCCceEEEe
Q 044627 144 ALTQASNLCGWDSMTIRHEA--ELVDEIVKDILKKIHD-----ISHFGNSEDLVGVDSHIQRINSLLCIG-LPDFRMVRP 215 (524)
Q Consensus 144 al~~~~~~~g~~~~~~~~e~--~~i~~i~~~v~~~l~~-----~~~~~~~~~~vGR~~el~~l~~~L~~~-~~~~~~v~I 215 (524)
|+--++...||.+++...+. .-+.-.++...+.+++ ...+.....+|.|+.|=.-+.+.|.+. ...++++.+
T Consensus 321 a~Lgv~svFgwN~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~ 400 (664)
T PTZ00494 321 GVLVVAYVFTANLRAYRRQQRGHQLRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVAL 400 (664)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccchhhHHHHHHHHHhhccCCCCcEEEE
Confidence 33445555666666433221 1223334444444433 123456778999999999999988773 346899999
Q ss_pred eccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHH-------Hhcc
Q 044627 216 WDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINK-------RLQQ 288 (524)
Q Consensus 216 ~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~-------~L~~ 288 (524)
.|.-|.|||+|.+....+-. -..+|++ +- +.++-++.+.+.++.+..+.-.++.+.+.+ ...+
T Consensus 401 TG~~GcGKSslcRsAvrkE~---~paV~VD----VR---g~EDtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g 470 (664)
T PTZ00494 401 AGGSGGGRCVPCRRAVRVEG---VALVHVD----VG---GTEDTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASD 470 (664)
T ss_pred ecCCCCCchHHHHHHHHHcC---CCeEEEE----ec---CCcchHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCC
Confidence 99999999999988766432 2456776 21 223334455566666555443444444433 2344
Q ss_pred CCeEEEecCC--CChhhHHHHhCCCCCCCCCcEEEEecCChhhhhh---cCCCeEEEcCCCCHHHHHHHHHHh
Q 044627 289 MKVCIILDNV--DKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDK---YGVDYVYKVEGFNYRESLEIFCYY 356 (524)
Q Consensus 289 ~~~LlVlDdv--~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~ 356 (524)
+.-+||+-=- .+..-+..-.-.+-.-..-|+|++----+.+... ..--..|-+++++.++|.+.-...
T Consensus 471 ~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 471 GVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred CCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 5556665322 2222111100111111245777764332222111 011257899999999998765543
No 220
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.82 E-value=0.0023 Score=59.11 Aligned_cols=57 Identities=7% Similarity=0.049 Sum_probs=36.2
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhC
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILG 269 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~ 269 (524)
++++.++|+.|+||||.+..++.++..+-..+..++. .....+-.+-++...+.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~---D~~R~ga~eQL~~~a~~l~v 57 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISA---DTYRIGAVEQLKTYAEILGV 57 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE---STSSTHHHHHHHHHHHHHTE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecC---CCCCccHHHHHHHHHHHhcc
Confidence 4689999999999999998888876655445666651 11223334444555555553
No 221
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.81 E-value=0.0065 Score=64.43 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=43.2
Q ss_pred CCccchhhhHHhhhhhhhc---CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 187 EDLVGVDSHIQRINSLLCI---GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.+++--.+.++++..||.. +....+++.|+|++|+||||+++.+++.+. |+..=|..
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEecC
Confidence 4455566788899999975 223467999999999999999999999864 44455654
No 222
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.81 E-value=0.0022 Score=61.82 Aligned_cols=90 Identities=19% Similarity=0.222 Sum_probs=55.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc----cCC-c------
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK----TSI-P------ 278 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~----~~~-~------ 278 (524)
-.-++|.|.+|+|||||+..+++....+|+..+++..+++- .....++...+...-.....-+ .++ .
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer--~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER--TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 45788999999999999999999988888877877755432 2344455555443211110000 111 1
Q ss_pred ---hHHHHHHh--c-cCCeEEEecCCCCh
Q 044627 279 ---PRYINKRL--Q-QMKVCIILDNVDKF 301 (524)
Q Consensus 279 ---~~~l~~~L--~-~~~~LlVlDdv~~~ 301 (524)
.-.+.+++ + ++++||++||+...
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 11233444 3 78999999999543
No 223
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.79 E-value=0.0036 Score=62.10 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=35.9
Q ss_pred hhhhhh-cCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 199 INSLLC-IGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 199 l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
|..+|. .+-+.-+++-|+|++|+||||||.+++......-..++|++
T Consensus 43 LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 43 LDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 444554 34455778999999999999999998887665556778887
No 224
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.018 Score=58.47 Aligned_cols=150 Identities=14% Similarity=0.099 Sum_probs=79.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccC
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQM 289 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~ 289 (524)
-|--.++|+||.|||++..++++.+. |+ ++=+. +.++. +-.+ ++.|+.. ...
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~--yd-IydLe-Lt~v~---~n~d-Lr~LL~~--------------------t~~ 286 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN--YD-IYDLE-LTEVK---LDSD-LRHLLLA--------------------TPN 286 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC--Cc-eEEee-ecccc---CcHH-HHHHHHh--------------------CCC
Confidence 46678999999999999999999764 33 22222 11111 1111 2222221 224
Q ss_pred CeEEEecCCCChh--------------------hHHHHhCCCCCCCC---CcEE-EEecCChhhhhh-----cCCCeEEE
Q 044627 290 KVCIILDNVDKFG--------------------HSEYLTGGLSRFGH---GSRV-IVTTRDKKVLDK-----YGVDYVYK 340 (524)
Q Consensus 290 ~~LlVlDdv~~~~--------------------~~~~l~~~~~~~~~---gs~I-IiTTR~~~~~~~-----~~~~~~~~ 340 (524)
+-+||+.|++-.- .+.-|+..+...-. +-|| ++||...+-+.- -.....+.
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 5677777775220 12223333332111 2355 557765433221 11234567
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044627 341 VEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSF 392 (524)
Q Consensus 341 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 392 (524)
+.-=+.+.-..|+.++..... + ..+..+|.+...+.-+.=..++..|
T Consensus 367 mgyCtf~~fK~La~nYL~~~~-~----h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEE-D----HRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCC-C----cchhHHHHHHhhcCccCHHHHHHHH
Confidence 787888888888888764332 1 2345555555556555544444443
No 225
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.76 E-value=0.017 Score=58.04 Aligned_cols=45 Identities=20% Similarity=0.079 Sum_probs=35.8
Q ss_pred ccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhh
Q 044627 189 LVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 189 ~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
+||....++++.+.+..-......|.|+|..|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 478888888888877664334456789999999999999998764
No 226
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.009 Score=61.54 Aligned_cols=48 Identities=27% Similarity=0.219 Sum_probs=35.9
Q ss_pred Cccchh---hhHHhhhhhhhcCC-------CCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 188 DLVGVD---SHIQRINSLLCIGL-------PDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 188 ~~vGR~---~el~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+.-|-| .|+++|.++|..+. .=++-|.++|++|.|||-||++++-...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 445554 46777788887532 1167789999999999999999987543
No 227
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.75 E-value=0.046 Score=58.48 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=42.1
Q ss_pred CCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 185 NSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
....++|+...++++.+.+..-......|.|+|..|+|||++|+.+.+.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 35679999999999999887744455678899999999999999998854
No 228
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.0025 Score=57.79 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=24.0
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
+.|.++|.+|+||||+|+++++.+++.-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 4688999999999999999999776543
No 229
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.72 E-value=0.0058 Score=61.38 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=38.5
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHh
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
+.++|+...++++.+.+..-......|.|+|..|+||+++|+.+..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999888876444445688999999999999998875
No 230
>PRK09354 recA recombinase A; Provisional
Probab=96.72 E-value=0.0041 Score=62.19 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=36.7
Q ss_pred hhhhhhh-cCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 198 RINSLLC-IGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 198 ~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.|..+|. .+-+.-+++-|+|++|+||||||.+++......-..++|++
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 3445555 34455779999999999999999998887665556778887
No 231
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.71 E-value=0.0018 Score=58.85 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=32.0
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...+|.+.|++|+||||+|+.+++.+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3568999999999999999999999887777777775
No 232
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.70 E-value=0.008 Score=62.92 Aligned_cols=96 Identities=9% Similarity=0.069 Sum_probs=57.1
Q ss_pred HhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc--
Q 044627 197 QRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK-- 274 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-- 274 (524)
.+|.+.|..+-....++.|.|.+|+|||||+.+++.....+-..++|++ . ..+...+... ...++....+.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs----~--Ees~~qi~~r-a~rlg~~~~~l~~ 139 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS----G--EESASQIKLR-AERLGLPSDNLYL 139 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE----c--cccHHHHHHH-HHHcCCChhcEEE
Confidence 4455556544445679999999999999999999987754444577776 2 1233333222 23333211111
Q ss_pred -cCCchHHHHHHhc-cCCeEEEecCCC
Q 044627 275 -TSIPPRYINKRLQ-QMKVCIILDNVD 299 (524)
Q Consensus 275 -~~~~~~~l~~~L~-~~~~LlVlDdv~ 299 (524)
.+...+.+.+.+. .+.-++|+|.+.
T Consensus 140 ~~e~~l~~i~~~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 140 LAETNLEAILATIEEEKPDLVVIDSIQ 166 (446)
T ss_pred eCCCCHHHHHHHHHhhCCCEEEEechh
Confidence 2223444555544 356789999983
No 233
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.70 E-value=0.004 Score=61.72 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=35.5
Q ss_pred hhhhhh-cCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 199 INSLLC-IGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 199 l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
|..+|. .+-+..+++-|+|++|+||||||.+++......-..++|++
T Consensus 43 LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 43 LDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 444454 34455779999999999999999998887655555677886
No 234
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.021 Score=53.44 Aligned_cols=52 Identities=29% Similarity=0.409 Sum_probs=38.6
Q ss_pred CCccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 187 EDLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
.+.=|.+-..+++++.... +-+.++-|.++|++|.|||.||+++++.....|
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 3455677777777665432 224578889999999999999999999776554
No 235
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.60 E-value=0.013 Score=51.20 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=57.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQ 288 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~ 288 (524)
.-.+++|.|..|.|||||++.++..... ..+.+++.....+.--..+.. .+...-.+.+.+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~~~lS~----------------G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYFEQLSG----------------GEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEEccCCH----------------HHHHHHHHHHHHhc
Confidence 3468999999999999999999875432 344455542111110011000 01112234455666
Q ss_pred CCeEEEecCCC---ChhhHHHHhCCCCCCCCCcEEEEecCChhhhhh
Q 044627 289 MKVCIILDNVD---KFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDK 332 (524)
Q Consensus 289 ~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~ 332 (524)
++-++++|+.. +....+.+...+... +..||++|.+......
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 77899999884 333333332222211 2468888887655443
No 236
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.58 E-value=0.0025 Score=55.51 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=21.3
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987655
No 237
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.57 E-value=0.0061 Score=56.41 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=56.8
Q ss_pred HHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCccc
Q 044627 196 IQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKT 275 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~ 275 (524)
.+.+...+.. +-+++.|.|.+|.||||++..+...+...-..++++. .-......+....+.....+
T Consensus 7 ~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a---------pT~~Aa~~L~~~~~~~a~Ti- 73 (196)
T PF13604_consen 7 REAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA---------PTNKAAKELREKTGIEAQTI- 73 (196)
T ss_dssp HHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE---------SSHHHHHHHHHHHTS-EEEH-
T ss_pred HHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC---------CcHHHHHHHHHhhCcchhhH-
Confidence 3444445543 2467889999999999999998886655433444444 11222223333322111000
Q ss_pred CCchHHHHHHh---------ccCCeEEEecCCC--ChhhHHHHhCCCCCCCCCcEEEEecC
Q 044627 276 SIPPRYINKRL---------QQMKVCIILDNVD--KFGHSEYLTGGLSRFGHGSRVIVTTR 325 (524)
Q Consensus 276 ~~~~~~l~~~L---------~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IIiTTR 325 (524)
...+.... ..++-+||+|++. +...+..++..... .++++|+.--
T Consensus 74 ---~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 74 ---HSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp ---HHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred ---HHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 00000000 1234599999995 34456666655542 4778877544
No 238
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.57 E-value=0.01 Score=62.25 Aligned_cols=96 Identities=9% Similarity=0.091 Sum_probs=57.0
Q ss_pred HHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc-
Q 044627 196 IQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK- 274 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~- 274 (524)
+.+|.+.|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|++ .. .+...+... +..++-...+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs----~E--Es~~qi~~r-a~rlg~~~~~l~ 152 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS----GE--ESLQQIKMR-AIRLGLPEPNLY 152 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE----Cc--CCHHHHHHH-HHHcCCChHHeE
Confidence 34555666544455679999999999999999999887655444677777 21 222332221 12222111111
Q ss_pred --cCCchHHHHHHhcc-CCeEEEecCC
Q 044627 275 --TSIPPRYINKRLQQ-MKVCIILDNV 298 (524)
Q Consensus 275 --~~~~~~~l~~~L~~-~~~LlVlDdv 298 (524)
.+...+.+.+.+.. +.-++|+|.+
T Consensus 153 ~~~e~~~~~I~~~i~~~~~~~vVIDSI 179 (454)
T TIGR00416 153 VLSETNWEQICANIEEENPQACVIDSI 179 (454)
T ss_pred EcCCCCHHHHHHHHHhcCCcEEEEecc
Confidence 22334555555544 5678999988
No 239
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.55 E-value=0.0017 Score=55.34 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEeeccccchHHHHHHHHHhhh
Q 044627 213 VRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
|+|.|.+|+||||+|+++.+++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 240
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.088 Score=49.59 Aligned_cols=162 Identities=20% Similarity=0.229 Sum_probs=85.7
Q ss_pred CCccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccC
Q 044627 187 EDLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVE 255 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (524)
.++=|-+..+++|...+-. +-..++-|.++|++|.|||-+|++.+.+....|-
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFL---------------- 234 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFL---------------- 234 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHH----------------
Confidence 4556777777777665432 1134677889999999999999998876554331
Q ss_pred HHHHHHHHHHHHhCCCCcccCCchHHHHHHh---c-cCCeEEEecCCCCh-------hh---------HHHHhCCCCCCC
Q 044627 256 LEHLRDQILSQILGENIIKTSIPPRYINKRL---Q-QMKVCIILDNVDKF-------GH---------SEYLTGGLSRFG 315 (524)
Q Consensus 256 ~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L---~-~~~~LlVlDdv~~~-------~~---------~~~l~~~~~~~~ 315 (524)
.+..--+-++. ..++...++... + ..+.+|.+|.++.. +. .-.++..+..+.
T Consensus 235 --KLAgPQLVQMf------IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs 306 (424)
T KOG0652|consen 235 --KLAGPQLVQMF------IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS 306 (424)
T ss_pred --HhcchHHHhhh------hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC
Confidence 11111111111 223333444332 2 35788889988522 11 222444455444
Q ss_pred C--CcEEEEecCCh-----hhhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCC-CCCccHHHHHH
Q 044627 316 H--GSRVIVTTRDK-----KVLDKYGVDYVYKVEGFNYRESLEIFCYYAFRQN-HCPGDLLVLSD 372 (524)
Q Consensus 316 ~--gs~IIiTTR~~-----~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~ 372 (524)
+ ..+||..|... .++.+-...+.++.+..+.+.-.+++.-++-+-+ .+.-.++++++
T Consensus 307 s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaR 371 (424)
T KOG0652|consen 307 SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELAR 371 (424)
T ss_pred CccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhh
Confidence 4 45677666533 3333333455666665555544555554443222 33445555543
No 241
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.48 E-value=0.0063 Score=61.58 Aligned_cols=108 Identities=14% Similarity=0.114 Sum_probs=62.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCc-ccCCchHHHHHHhcc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENII-KTSIPPRYINKRLQQ 288 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~~~~~~~~l~~~L~~ 288 (524)
...|.|.|+.|+||||++..+.+.+.......++.. .. ............+...... ........++..|+.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti----Ed---p~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI----ED---PIEYVHRNKRSLINQREVGLDTLSFANALRAALRE 194 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE----cC---ChhhhccCccceEEccccCCCCcCHHHHHHHhhcc
Confidence 468999999999999999998887765544444443 11 1110000000000000000 023456677888888
Q ss_pred CCeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCCh
Q 044627 289 MKVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDK 327 (524)
Q Consensus 289 ~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~ 327 (524)
.+=.|++|.+.+.+......... ..|..++.|.-..
T Consensus 195 ~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 195 DPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTN 230 (343)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCC
Confidence 99999999998887766544332 2355556555443
No 242
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.47 E-value=0.037 Score=57.31 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=23.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+.++.++|.+|+||||+|..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999998888754
No 243
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.47 E-value=0.043 Score=56.98 Aligned_cols=44 Identities=11% Similarity=0.131 Sum_probs=35.5
Q ss_pred hhhhHHhhhhhhh-----cCCCCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 192 VDSHIQRINSLLC-----IGLPDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 192 R~~el~~l~~~L~-----~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
....+.++..||. .+.-+.+++.|+|++|+||||..+.++..+.
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 4456778888887 3445678999999999999999999988654
No 244
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.46 E-value=0.002 Score=54.30 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=21.7
Q ss_pred EEeeccccchHHHHHHHHHhhhcccccceeE
Q 044627 213 VRPWDMHGIAKTDIARAILNQISSQFEGRSF 243 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w 243 (524)
|.|+|.+|+|||++|+.+++.+...|..+-+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~ 32 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQF 32 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE-
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEe
Confidence 6799999999999999999998888765433
No 245
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.45 E-value=0.011 Score=65.88 Aligned_cols=49 Identities=20% Similarity=0.123 Sum_probs=39.5
Q ss_pred CCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 186 SEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
...++|+...++.+.+.+..-......|.|+|..|+|||++|+.+.+.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3469999999999887776533334578899999999999999998754
No 246
>PRK06217 hypothetical protein; Validated
Probab=96.45 E-value=0.013 Score=53.58 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=21.7
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.|.|.|.+|+||||||++++..+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999999764
No 247
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.43 E-value=0.023 Score=50.30 Aligned_cols=115 Identities=12% Similarity=0.056 Sum_probs=60.4
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHH-----hC------CCC-cc---c
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQI-----LG------ENI-IK---T 275 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l-----~~------~~~-~~---~ 275 (524)
..|-|++..|.||||+|...+-+...+--.+.++..++.. ...+-..+++.+ ..+ +. ... +. .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 4677888889999999999888766554456665543321 122323333332 000 00 000 00 1
Q ss_pred CCchHHHHHHhcc-CCeEEEecCCCCh-----hhHHHHhCCCCCCCCCcEEEEecCCh
Q 044627 276 SIPPRYINKRLQQ-MKVCIILDNVDKF-----GHSEYLTGGLSRFGHGSRVIVTTRDK 327 (524)
Q Consensus 276 ~~~~~~l~~~L~~-~~~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~IIiTTR~~ 327 (524)
....+..++.+.. .-=|||||++... -..+.+...+....++..+|+|.|+.
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122233334433 4569999999422 12222332233233677899999985
No 248
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.39 E-value=0.0034 Score=66.14 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=41.5
Q ss_pred CCccchhhhHHhhhhhhhc----CCCCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 187 EDLVGVDSHIQRINSLLCI----GLPDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
.+++|.++.+++|.+.|.. -....+++.++|++|+|||+||+.+++-+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 4699999999999998832 2345679999999999999999999986544
No 249
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.36 E-value=0.0028 Score=58.64 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=23.2
Q ss_pred EEEeeccccchHHHHHHHHHhhhccc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
+|+|.|.+|+||||||+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999987643
No 250
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.32 E-value=0.015 Score=57.92 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=28.5
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...+++++|++|+||||++..++..+...-..+..+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4689999999999999999999987765433344443
No 251
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.28 E-value=0.0043 Score=64.42 Aligned_cols=46 Identities=24% Similarity=0.114 Sum_probs=38.9
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
..++||+..++.+...+..+ ..|.|.|++|+|||+||+.++.....
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 46999999999998888654 35789999999999999999986543
No 252
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.27 E-value=0.07 Score=54.68 Aligned_cols=25 Identities=16% Similarity=0.026 Sum_probs=22.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 253
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.27 E-value=0.072 Score=57.11 Aligned_cols=50 Identities=12% Similarity=-0.082 Sum_probs=38.3
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhh
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
...+.++|....++++.+.+..-......|.|+|..|+||+.||+.+...
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 34567999999998888777642223345789999999999999997553
No 254
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.045 Score=54.90 Aligned_cols=54 Identities=15% Similarity=0.076 Sum_probs=35.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHhhhcC----CCCCccHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044627 336 DYVYKVEGFNYRESLEIFCYYAFRQ----NHCPGDLLVLSDNVVDYANGSSLALNVLRSSF 392 (524)
Q Consensus 336 ~~~~~l~~L~~~ea~~L~~~~~~~~----~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 392 (524)
..+++++..+.+|+..+...+.-.+ ..+. ++--+++.-..+|+|--++.++.++
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 3568899999999988776554221 1121 3345677777899996676666654
No 255
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.26 E-value=0.02 Score=51.37 Aligned_cols=125 Identities=16% Similarity=0.068 Sum_probs=62.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeee---ecccccccCHHHHHHHHHHHHhC-CCCcc--cCCchHHHH
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMAN---VREESKRVELEHLRDQILSQILG-ENIIK--TSIPPRYIN 283 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~l~~~ll~~l~~-~~~~~--~~~~~~~l~ 283 (524)
-..++|.|..|.|||||++.++...... .+.+++.. +....+...+. ...+...+.. ..... -+...-.+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccc--cccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 4589999999999999999998854322 23233321 11111211111 0112222211 11111 222233445
Q ss_pred HHhccCCeEEEecCCC---ChhhHHHHhCCCCCCCCCcEEEEecCChhhhhhcCCCeEEEc
Q 044627 284 KRLQQMKVCIILDNVD---KFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGVDYVYKV 341 (524)
Q Consensus 284 ~~L~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l 341 (524)
+.+..++-++++|+-. +....+.+...+... +..||++|.+...... ..+++.+
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 5666778899999883 223233222222212 3568888887665432 3444444
No 256
>PRK08233 hypothetical protein; Provisional
Probab=96.25 E-value=0.0035 Score=57.08 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=23.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..+|+|.|.+|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 257
>PRK06762 hypothetical protein; Provisional
Probab=96.25 E-value=0.0036 Score=56.21 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=22.3
Q ss_pred eEEEeeccccchHHHHHHHHHhhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.+|.|+|++|+||||+|+.+++.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 588999999999999999999877
No 258
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=96.24 E-value=0.011 Score=49.95 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=51.2
Q ss_pred cEEecCcccccCCchHHHHHHHHHhCCCceEe-cCCcCCCCcchHHHHHhhhhcceEEEEeecC
Q 044627 14 DVFLSFRGEDTRNNFTSHLFAAFCREKIKAFI-DEQLKKGDDISSALLNAIEESKISVIIFSKG 76 (524)
Q Consensus 14 dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~-d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~ 76 (524)
.|||.|+ .| ..++..+...|+..|+.+.. ++....|..+.+.+.+.+++|+.+|+++||+
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 3899987 66 45899999999988888765 3356889999999999999999999999985
No 259
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.23 E-value=0.0058 Score=46.04 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=21.0
Q ss_pred EEEeeccccchHHHHHHHHHhhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
+|+|.|.+|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 260
>PTZ00301 uridine kinase; Provisional
Probab=96.22 E-value=0.0038 Score=58.31 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=23.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
+.+|+|.|.+|+||||||+.+.+++..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 468999999999999999999887643
No 261
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.22 E-value=0.0038 Score=56.34 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=23.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...|.|+|++|+||||+|+.++..+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999874
No 262
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.20 E-value=0.025 Score=51.55 Aligned_cols=120 Identities=14% Similarity=0.156 Sum_probs=63.0
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHH------HHHHHHHHHhCCCC------cc--
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEH------LRDQILSQILGENI------IK-- 274 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~------l~~~ll~~l~~~~~------~~-- 274 (524)
...+++|.|..|.|||||++.++..... ..+.+++.... ... ..... ...+++..++.... ..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~-~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKD-LAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEE-CCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3468999999999999999999875433 34445554211 111 01111 11113333322111 11
Q ss_pred cCCchHHHHHHhccCCeEEEecCCC---ChhhHHHHhCCCCCC-CC-CcEEEEecCChhhhh
Q 044627 275 TSIPPRYINKRLQQMKVCIILDNVD---KFGHSEYLTGGLSRF-GH-GSRVIVTTRDKKVLD 331 (524)
Q Consensus 275 ~~~~~~~l~~~L~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gs~IIiTTR~~~~~~ 331 (524)
-+...-.+.+.+...+-++++|+.. +....+.+...+... .. +..||++|.+.....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1111223455666788899999984 333333332222211 12 567888888766543
No 263
>PRK10867 signal recognition particle protein; Provisional
Probab=96.20 E-value=0.064 Score=55.65 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=24.4
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
.+.+|.++|.+|+||||++..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36799999999999999998888766544
No 264
>PRK03839 putative kinase; Provisional
Probab=96.20 E-value=0.0036 Score=57.05 Aligned_cols=24 Identities=13% Similarity=0.364 Sum_probs=21.8
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999874
No 265
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.19 E-value=0.01 Score=57.31 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=37.8
Q ss_pred hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh--ccc----ccceeEeeeecccccccCHHHHH
Q 044627 198 RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI--SSQ----FEGRSFMANVREESKRVELEHLR 260 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~--~~~----f~~~~wv~~~~~~~~~~~~~~l~ 260 (524)
.|-++|..+-....+.=|+|.+|+|||+|+.+++-.. ... =..++|++ ....+....+.
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid----Te~~f~~~Rl~ 90 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID----TEGTFSPERLQ 90 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE----SSSSS-HHHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe----CCCCCCHHHHH
Confidence 4555564433345688899999999999999887543 221 23588887 44445555544
No 266
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.18 E-value=0.0018 Score=62.88 Aligned_cols=35 Identities=9% Similarity=0.074 Sum_probs=23.2
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
+.|.|+|.||+||||+|+++...+...-..+.+++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 47899999999999999999987665323344444
No 267
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0091 Score=56.15 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=27.6
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
+.++-|.++|++|.|||-+|++++++.. .||+.
T Consensus 209 dppkgvllygppgtgktl~aravanrtd-----acfir 241 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIR 241 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEe
Confidence 4577889999999999999999999765 45665
No 268
>PRK04040 adenylate kinase; Provisional
Probab=96.17 E-value=0.0047 Score=56.70 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=23.1
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.+|+|+|++|+||||+++.+++++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999875
No 269
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.16 E-value=0.0028 Score=52.42 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=22.0
Q ss_pred EEeeccccchHHHHHHHHHhhhcccc
Q 044627 213 VRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
|.|+|.+|+|||+||..++..+...+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998766543
No 270
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.15 E-value=0.027 Score=51.22 Aligned_cols=122 Identities=12% Similarity=0.070 Sum_probs=62.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHh--CCC------------C-cc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQIL--GEN------------I-IK 274 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~--~~~------------~-~~ 274 (524)
-.+++|.|..|.|||||++.++..... ..+.+++.... +......+-..+. ... . ..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~-------~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVP-------VSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEE-------HHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 458999999999999999999875432 23444444210 0000001111100 000 0 00
Q ss_pred --cCCchHHHHHHhccCCeEEEecCCC---ChhhHHHHhCCCCCCCCCcEEEEecCChhhhhhcCCCeEEEc
Q 044627 275 --TSIPPRYINKRLQQMKVCIILDNVD---KFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGVDYVYKV 341 (524)
Q Consensus 275 --~~~~~~~l~~~L~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l 341 (524)
.+...-.+.+.+..++-+++||+.. +....+.+...+.....+..||++|.+...... ..+.+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1111223445566778899999884 222222222222111235678888888776543 3444444
No 271
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.15 E-value=0.013 Score=57.00 Aligned_cols=103 Identities=13% Similarity=0.072 Sum_probs=60.4
Q ss_pred hHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc
Q 044627 195 HIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK 274 (524)
Q Consensus 195 el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 274 (524)
.++.+..++.. ....|.|.|..|+||||++..+...+...-..++.+.+-.+. .+..+ .++... .+.
T Consensus 68 ~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~----~~~~~-----~q~~v~-~~~ 134 (264)
T cd01129 68 NLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEY----QIPGI-----NQVQVN-EKA 134 (264)
T ss_pred HHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCcee----cCCCc-----eEEEeC-CcC
Confidence 33445455542 245899999999999999999887664422234444422111 10000 000000 011
Q ss_pred cCCchHHHHHHhccCCeEEEecCCCChhhHHHHhCC
Q 044627 275 TSIPPRYINKRLQQMKVCIILDNVDKFGHSEYLTGG 310 (524)
Q Consensus 275 ~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~ 310 (524)
.....+.++..|+..+=.|+++++.+.+....+...
T Consensus 135 ~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 135 GLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred CcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 224566778888888999999999988876654433
No 272
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.15 E-value=0.23 Score=47.38 Aligned_cols=180 Identities=13% Similarity=0.183 Sum_probs=102.0
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc------cccceeEeeeecc------ccc--
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS------QFEGRSFMANVRE------ESK-- 252 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~wv~~~~~------~~~-- 252 (524)
..+.++++.-..+.++... ++.+-..++|+.|.||-|.+..+.+++-+ .-+...|....+. ++.
T Consensus 13 ~~l~~~~e~~~~Lksl~~~--~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSST--GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhccc--CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 3477888888887777663 34678889999999999999888886533 1233444442221 111
Q ss_pred ---------ccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCe-EEEecCCCCh--hhHHHHhCCCCCCCCCcEE
Q 044627 253 ---------RVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKV-CIILDNVDKF--GHSEYLTGGLSRFGHGSRV 320 (524)
Q Consensus 253 ---------~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~-LlVlDdv~~~--~~~~~l~~~~~~~~~gs~I 320 (524)
...-.-+.++++..+..... + +.-..+.+ ++|+-.+++. +.-..+........+.+|+
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~q---------i-e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~Rl 160 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQ---------I-ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRL 160 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcc---------h-hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceE
Confidence 00112233344444332211 0 00011233 4555555432 2222333333333467888
Q ss_pred EEe----cCChhhhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh
Q 044627 321 IVT----TRDKKVLDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 321 IiT----TR~~~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (524)
|+. ||--....+ ..-.++++..+++|....+++.+-+.+-..+ .+++.+|+++++|+-
T Consensus 161 Il~cns~SriIepIrS--RCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nL 222 (351)
T KOG2035|consen 161 ILVCNSTSRIIEPIRS--RCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNL 222 (351)
T ss_pred EEEecCcccchhHHhh--heeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccH
Confidence 774 332222221 2346799999999999999887755543222 678999999999874
No 273
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.14 E-value=0.0063 Score=57.85 Aligned_cols=30 Identities=13% Similarity=0.090 Sum_probs=26.1
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
....+|+|.|.+|.|||||++.++..+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 457899999999999999999999876544
No 274
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.051 Score=55.13 Aligned_cols=36 Identities=11% Similarity=0.144 Sum_probs=28.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccc--cceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQF--EGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~wv~ 245 (524)
..+++++|+.|+||||++..++.+....+ ..+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 56899999999999999999998764433 3455554
No 275
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.13 E-value=0.0049 Score=57.70 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=23.9
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
+..+|+|.|.+|+||||||+.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999876
No 276
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.11 E-value=0.0067 Score=58.49 Aligned_cols=26 Identities=12% Similarity=0.383 Sum_probs=22.3
Q ss_pred EEEeeccccchHHHHHHHHHhhhccc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
.|.++|++|+||||+|+++++.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877543
No 277
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.11 E-value=0.007 Score=51.85 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=29.2
Q ss_pred hHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 195 HIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 195 el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+..++-+.|...-....+|.|.|.-|.|||||++.+++.+.
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34444444443223356899999999999999999999753
No 278
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.11 E-value=0.017 Score=52.37 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=20.3
Q ss_pred ceEEEeeccccchHHHHHHHHHh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
-.+++|.|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999998853
No 279
>PRK00625 shikimate kinase; Provisional
Probab=96.11 E-value=0.0042 Score=56.17 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.6
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.|.|+||+|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999875
No 280
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.10 E-value=0.051 Score=64.49 Aligned_cols=28 Identities=7% Similarity=0.030 Sum_probs=24.1
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..++-|.++|++|.|||.||+++|....
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 3467888999999999999999999653
No 281
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.09 E-value=0.013 Score=52.48 Aligned_cols=113 Identities=11% Similarity=-0.046 Sum_probs=59.0
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHH---hCC------CCcc----cCC
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQI---LGE------NIIK----TSI 277 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l---~~~------~~~~----~~~ 277 (524)
..|-|++-.|.||||.|..++-+...+--.++.+..++.. ...+-...+..+.-.+ +.. ..+. ...
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 5677888899999999999888765544344444322221 1122222222220000 000 0000 111
Q ss_pred chHHHHHHhcc-CCeEEEecCCC--------ChhhHHHHhCCCCCCCCCcEEEEecCCh
Q 044627 278 PPRYINKRLQQ-MKVCIILDNVD--------KFGHSEYLTGGLSRFGHGSRVIVTTRDK 327 (524)
Q Consensus 278 ~~~~l~~~L~~-~~~LlVlDdv~--------~~~~~~~l~~~~~~~~~gs~IIiTTR~~ 327 (524)
..+..++.+.. .-=|+|||.+. +.+.+-.++... .++..||+|-|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r---p~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQER---PGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC---CCCCEEEEECCCC
Confidence 22333444443 45699999994 223333344333 3678899999985
No 282
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.09 E-value=0.0095 Score=53.36 Aligned_cols=115 Identities=15% Similarity=0.068 Sum_probs=59.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc--cCCchHHHHHHhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK--TSIPPRYINKRLQ 287 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~--~~~~~~~l~~~L~ 287 (524)
-..++|.|..|.|||||.+.++..... ..+.+++.... ... ........ ..+.- ..+. .+...-.+.+.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~-~~~-~~~~~~~~---~~i~~-~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKE-VSF-ASPRDARR---AGIAM-VYQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEE-CCc-CCHHHHHh---cCeEE-EEecCHHHHHHHHHHHHHh
Confidence 458999999999999999999875432 34555554221 110 11111000 00000 0001 1112223445566
Q ss_pred cCCeEEEecCCC---ChhhHHHHhCCCCCC-CCCcEEEEecCChhhhh
Q 044627 288 QMKVCIILDNVD---KFGHSEYLTGGLSRF-GHGSRVIVTTRDKKVLD 331 (524)
Q Consensus 288 ~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~IIiTTR~~~~~~ 331 (524)
..+-++++|+.. +....+.+...+... ..+..||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 778899999884 222222222222111 23667888888876443
No 283
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.08 E-value=0.032 Score=50.64 Aligned_cols=115 Identities=14% Similarity=0.143 Sum_probs=59.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeee--cccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANV--REESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQ 287 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~--~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~ 287 (524)
-.+++|.|..|.|||||++.++.-... ..+.+++... ....+...+.. -+...-.+.+.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q~~~LSg----------------Gq~qrv~laral~ 87 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQYIDLSG----------------GELQRVAIAAALL 87 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEcccCCCCH----------------HHHHHHHHHHHHh
Confidence 458999999999999999998875432 2233443321 11111111000 1111223455566
Q ss_pred cCCeEEEecCCC---ChhhHHHHhCCCCCC-CC-CcEEEEecCChhhhhhcCCCeEEEcC
Q 044627 288 QMKVCIILDNVD---KFGHSEYLTGGLSRF-GH-GSRVIVTTRDKKVLDKYGVDYVYKVE 342 (524)
Q Consensus 288 ~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gs~IIiTTR~~~~~~~~~~~~~~~l~ 342 (524)
.++-++++|+-. +....+.+...+... .. +..||++|.+....... ..+.+.+.
T Consensus 88 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 88 RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 778899999884 222222222111111 12 35688888876655432 23444444
No 284
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.06 E-value=0.0074 Score=54.71 Aligned_cols=36 Identities=22% Similarity=0.121 Sum_probs=27.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..+|+|.|++|+||||+|+.++..+...-..+.+++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id 39 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLD 39 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEc
Confidence 568999999999999999999998754322344554
No 285
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.06 E-value=0.03 Score=54.43 Aligned_cols=112 Identities=14% Similarity=0.050 Sum_probs=64.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCC-------cccCC--chH
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENI-------IKTSI--PPR 280 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~-------~~~~~--~~~ 280 (524)
...++|.|..|.|||||.+.++..+... .+.+++...+ +.......+ +......-.. +..+. ...
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~-v~~~d~~~e----i~~~~~~~~q~~~~~r~~v~~~~~k~~ 184 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKK-VGIVDERSE----IAGCVNGVPQHDVGIRTDVLDGCPKAE 184 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEE-eecchhHHH----HHHHhcccccccccccccccccchHHH
Confidence 4688999999999999999999876543 3444554211 111111122 2222111110 11111 112
Q ss_pred HHHHHhc-cCCeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCChhhh
Q 044627 281 YINKRLQ-QMKVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVL 330 (524)
Q Consensus 281 ~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~ 330 (524)
.+...+. ..+-++++|.+...+.+..+...+. .|..+|+||-+..+.
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 2333333 5788999999987776766665543 477899999876553
No 286
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.06 E-value=0.015 Score=55.36 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=33.7
Q ss_pred hhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc------ccceeEee
Q 044627 199 INSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ------FEGRSFMA 245 (524)
Q Consensus 199 l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~wv~ 245 (524)
|..+|..+-....++.|+|.+|+|||+||.+++...... -..++|++
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 344454444456799999999999999999997643221 25788887
No 287
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.06 E-value=0.03 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.5
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+|.|+|.+|+||||||+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999764
No 288
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.05 E-value=0.17 Score=50.27 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=33.6
Q ss_pred EEEcCCCCHHHHHHHHHHhhhcCCCCC-ccHHHHHHHHHHHhcCChHHH
Q 044627 338 VYKVEGFNYRESLEIFCYYAFRQNHCP-GDLLVLSDNVVDYANGSSLAL 385 (524)
Q Consensus 338 ~~~l~~L~~~ea~~L~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal 385 (524)
+++|++++.+|+..++..+.-.+--.. ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987763332111 233445666776779999755
No 289
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.05 E-value=0.058 Score=47.84 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=27.9
Q ss_pred chhhhHHhhhhhhhcCC-CCceEEEeeccccchHHHHHHHHHhh
Q 044627 191 GVDSHIQRINSLLCIGL-PDFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 191 GR~~el~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
|.+.-++.+.+++.... .....|++.|++|+|||||...+..+
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcC
Confidence 44444555544442211 12456789999999999999998763
No 290
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.04 E-value=0.0064 Score=52.77 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=20.7
Q ss_pred EEeeccccchHHHHHHHHHhhh
Q 044627 213 VRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
|.|+|.+|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999988
No 291
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.03 E-value=0.011 Score=62.74 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=38.9
Q ss_pred HHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 196 IQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
+.+|.+.|..+-....++.|.|.+|+|||||+.+++.....+-..++++.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45566667655556779999999999999999999997765555666666
No 292
>PHA02244 ATPase-like protein
Probab=96.01 E-value=0.014 Score=58.48 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=35.0
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
..+..|+|....+......+..-......|.|+|++|+|||+||+++++....
T Consensus 93 ~~d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 93 GIDTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred hCCCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34567888766665443333221111235778999999999999999997643
No 293
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.01 E-value=0.015 Score=56.44 Aligned_cols=44 Identities=25% Similarity=0.149 Sum_probs=36.9
Q ss_pred hhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 202 LLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 202 ~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.|..+-+.-+++.|+|.+|+|||+++.+++.+.......++|+.
T Consensus 15 ~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 15 ILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33334456789999999999999999999998887888899988
No 294
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.094 Score=56.67 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=36.1
Q ss_pred CccchhhhHHhhhhhhhc----------CCCCceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 188 DLVGVDSHIQRINSLLCI----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 188 ~~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
+.=|-++...+|.+-+.. +-.+..-|.+||++|.|||-||++++-...-.
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~ 732 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN 732 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee
Confidence 455677777777765433 22234568899999999999999999876543
No 295
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.082 Score=53.41 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=29.2
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
+.+++.|+|+.|+||||++..++..+..+-..+.+++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4789999999999999999999887644434466665
No 296
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.028 Score=50.72 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=62.5
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc------------cC
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK------------TS 276 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~------------~~ 276 (524)
....++|.|..|.|||||.+.++.-... ..+.+++.... ... .........+ ..+ ...... .+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~-~~~-~~~~~~~~~i-~~~-~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVD-LRD-LDLESLRKNI-AYV-PQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEE-hhh-cCHHHHHhhE-EEE-cCCchhccchHHHHhhCHHH
Confidence 3468999999999999999999885432 34445544211 100 0000000000 000 000000 01
Q ss_pred CchHHHHHHhccCCeEEEecCCC---ChhhHHHHhCCCCCCCCCcEEEEecCChhhhhhcCCCeEEEc
Q 044627 277 IPPRYINKRLQQMKVCIILDNVD---KFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGVDYVYKV 341 (524)
Q Consensus 277 ~~~~~l~~~L~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l 341 (524)
...-.+.+.+..++-+++||+-. +....+.+...+.....+..||++|.+...... ..+.+.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11123445566778899999884 222222222222111235678888888766543 4444444
No 297
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.04 Score=52.89 Aligned_cols=171 Identities=15% Similarity=0.155 Sum_probs=88.0
Q ss_pred CCccchhhhHHhhhhhhhc----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCH
Q 044627 187 EDLVGVDSHIQRINSLLCI----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVEL 256 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 256 (524)
.+.-|-|.-.+.|.+..-. ....-+-|.++|++|.|||.||++++-..... |++ +|.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-----FFS----vSS---- 199 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-----FFS----VSS---- 199 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-----eEE----eeh----
Confidence 4577888777777664321 22346789999999999999999998865432 333 222
Q ss_pred HHHHHHHHHHHhCCCCcccCCchHHHHHHh-ccCCeEEEecCCCChh---------hHH----HHhCCCC---CCCCCcE
Q 044627 257 EHLRDQILSQILGENIIKTSIPPRYINKRL-QQMKVCIILDNVDKFG---------HSE----YLTGGLS---RFGHGSR 319 (524)
Q Consensus 257 ~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~---------~~~----~l~~~~~---~~~~gs~ 319 (524)
.++ .+.-.++. +.+...|.+.. .+++-+|.+|.++... ... .|+-... ....|..
T Consensus 200 SDL----vSKWmGES----EkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvL 271 (439)
T KOG0739|consen 200 SDL----VSKWMGES----EKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVL 271 (439)
T ss_pred HHH----HHHHhccH----HHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceE
Confidence 111 11211211 12223333333 4578899999996321 111 1222222 1223555
Q ss_pred EEEecCChhhhhhc---CCCeEEEcCCCCHHHH-HHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC
Q 044627 320 VIVTTRDKKVLDKY---GVDYVYKVEGFNYRES-LEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS 381 (524)
Q Consensus 320 IIiTTR~~~~~~~~---~~~~~~~l~~L~~~ea-~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 381 (524)
||-.|..+.++.+. .....+-++ |+...| ..+|.-+.+... ..--++..+++.++..|.
T Consensus 272 VLgATNiPw~LDsAIRRRFekRIYIP-LPe~~AR~~MF~lhlG~tp--~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRRRFEKRIYIP-LPEAHARARMFKLHLGDTP--HVLTEQDFKELARKTEGY 334 (439)
T ss_pred EEecCCCchhHHHHHHHHhhcceecc-CCcHHHhhhhheeccCCCc--cccchhhHHHHHhhcCCC
Confidence 66677766655442 122333333 444444 445555543222 111123355666666665
No 298
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.97 E-value=0.52 Score=46.56 Aligned_cols=164 Identities=11% Similarity=-0.001 Sum_probs=90.6
Q ss_pred hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc---------cc-ceeEeeeecccccccCHHHHHHHHHHHH
Q 044627 198 RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ---------FE-GRSFMANVREESKRVELEHLRDQILSQI 267 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~---------f~-~~~wv~~~~~~~~~~~~~~l~~~ll~~l 267 (524)
.+.+.+..+ .-.++..++|..|+||+++|..+++.+-.. .+ ...+++. ........++. ++...+
T Consensus 7 ~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~---~g~~i~vd~Ir-~l~~~~ 81 (299)
T PRK07132 7 FLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI---FDKDLSKSEFL-SAINKL 81 (299)
T ss_pred HHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc---CCCcCCHHHHH-HHHHHh
Confidence 344444332 235788899999999999999999976221 11 1222220 01112222222 222221
Q ss_pred hCCCCcccCCchHHHHHHhccCCeEEEecCCCChh--hHHHHhCCCCCCCCCcEEEEecCC-hhhhhh-cCCCeEEEcCC
Q 044627 268 LGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG--HSEYLTGGLSRFGHGSRVIVTTRD-KKVLDK-YGVDYVYKVEG 343 (524)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~-~~~~~~-~~~~~~~~l~~ 343 (524)
.-.. .-.+.+=++|+|+++... ....|+..+...++++.+|++|.+ ..+... ......+++.+
T Consensus 82 ~~~~-------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~ 148 (299)
T PRK07132 82 YFSS-------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKE 148 (299)
T ss_pred ccCC-------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCC
Confidence 1100 001456688889886553 355666666655667777765544 444433 23467899999
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHH
Q 044627 344 FNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNV 387 (524)
Q Consensus 344 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 387 (524)
++.++..+.+.... .+ .+.+..++...+|.=-|+..
T Consensus 149 l~~~~l~~~l~~~~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 149 PDQQKILAKLLSKN-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCHHHHHHHHHHcC-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 99999988776541 11 23355556666653345544
No 299
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.0093 Score=52.89 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=30.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...+|.++|++|.||||+|.++.+++......+..++
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4679999999999999999999999877665555554
No 300
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.014 Score=52.93 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=20.7
Q ss_pred EEEeeccccchHHHHHHHHHhhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.|.|.|.+|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999984
No 301
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.94 E-value=0.011 Score=58.80 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=36.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHH
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQ 262 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 262 (524)
.+++...|.||+||||+|.+.+-........+.-++ ....+++..++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS----tDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS----TDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE----eCCCCchHhhhcc
Confidence 478999999999999999998888776665566665 4555565555443
No 302
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.93 E-value=0.021 Score=54.47 Aligned_cols=122 Identities=14% Similarity=0.006 Sum_probs=69.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeec--ccccccCHHHHHHHHHHHHhCCCC-------cc--cCC
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVR--EESKRVELEHLRDQILSQILGENI-------IK--TSI 277 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~l~~~ll~~l~~~~~-------~~--~~~ 277 (524)
+..+++|+|.+|+|||||++.+..-...... .+++.... ... ......-..+++..++.... +. .+.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G-~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSG-EILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCc-eEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 3568999999999999999999885554333 33333110 011 22233445566666553322 11 222
Q ss_pred chHHHHHHhccCCeEEEecCCCChh------hHHHHhCCCCCCCCCcEEEEecCChhhhhhc
Q 044627 278 PPRYINKRLQQMKVCIILDNVDKFG------HSEYLTGGLSRFGHGSRVIVTTRDKKVLDKY 333 (524)
Q Consensus 278 ~~~~l~~~L~~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~ 333 (524)
-.-.+.+.|.-++-|+|.|..-+.- ++-.++..+. ...|...++.|-+-.+...+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 2335567788899999999884321 2222222222 11355677777776666554
No 303
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.93 E-value=0.027 Score=54.67 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=36.7
Q ss_pred hhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 199 INSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 199 l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
|..+|..+-+..+++=|+|+.|+||||||.+++-.....-..++|++
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 33444444455788999999999999999998887666666899998
No 304
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.05 Score=58.01 Aligned_cols=175 Identities=21% Similarity=0.142 Sum_probs=91.2
Q ss_pred CCCccchhhhHHhh---hhhhhcCC-------CCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccC
Q 044627 186 SEDLVGVDSHIQRI---NSLLCIGL-------PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVE 255 (524)
Q Consensus 186 ~~~~vGR~~el~~l---~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (524)
..+.-|.|+..+++ .+.|..+. .-++-|.++|++|.|||.||++++....-.| .. .|.
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF-----f~----iSG--- 216 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----ISG--- 216 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc-----ee----ccc---
Confidence 45677877665554 55555432 2267789999999999999999998654332 11 110
Q ss_pred HHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh----------------hhHHHHhCCCCCCCC--C
Q 044627 256 LEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF----------------GHSEYLTGGLSRFGH--G 317 (524)
Q Consensus 256 ~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~~--g 317 (524)
.++.... -.++ .........+..++.++++++|.++.. ..+..++.....++. |
T Consensus 217 -S~FVemf-VGvG------AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~g 288 (596)
T COG0465 217 -SDFVEMF-VGVG------ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEG 288 (596)
T ss_pred -hhhhhhh-cCCC------cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCc
Confidence 0000000 0000 011122333444566899999988532 135556666665553 3
Q ss_pred cEEEEecCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCC-CCccHHHHHHHHHHHhcCChHH
Q 044627 318 SRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQNH-CPGDLLVLSDNVVDYANGSSLA 384 (524)
Q Consensus 318 s~IIiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~PLa 384 (524)
.-||..|..++++.. -...+.+.++..+...-.++++-++-...- +.-+ ...|++.+-|.-.|
T Consensus 289 viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd----l~~iAr~tpGfsGA 357 (596)
T COG0465 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVD----LKKIARGTPGFSGA 357 (596)
T ss_pred eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCC----HHHHhhhCCCcccc
Confidence 223333333333321 224456667776666666777755532221 1112 23367777776544
No 305
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.0082 Score=55.59 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=26.4
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
.+.+|||.|.+|+||||+|+.++..+...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 46799999999999999999999988766
No 306
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.92 E-value=0.022 Score=54.48 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=36.2
Q ss_pred hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 198 RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.|.++|..+-+...++.|.|.+|+|||+||.+++.....+-..++|+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 344555555556789999999999999999998776544556677777
No 307
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.90 E-value=0.082 Score=54.97 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=27.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc--ccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS--SQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~wv~ 245 (524)
.+++.++|++|+||||++..++..+. .....+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999887665 3334566665
No 308
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.90 E-value=0.0063 Score=55.69 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=23.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
+.++|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998865
No 309
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.90 E-value=0.027 Score=58.02 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=24.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
.+.+|.++|++|+||||++..++..+...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36799999999999999999888765443
No 310
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.89 E-value=0.0069 Score=56.60 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=23.9
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...+|+|.|++|+||||||+.++..+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999999988654
No 311
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.89 E-value=0.01 Score=55.04 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=29.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...+|+|+|++|+||||||+.+...+...-...+++.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 4679999999999999999999997754433455554
No 312
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.89 E-value=0.051 Score=55.56 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=23.6
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999888654
No 313
>PRK04328 hypothetical protein; Provisional
Probab=95.86 E-value=0.023 Score=54.69 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=35.2
Q ss_pred hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 198 RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.|-++|..+-+...++.|.|.+|+|||+||.+++......-..++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344455444445678999999999999999998876544456677777
No 314
>PRK13947 shikimate kinase; Provisional
Probab=95.85 E-value=0.0061 Score=54.94 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=22.7
Q ss_pred EEEeeccccchHHHHHHHHHhhhccc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
.|.|.|++|+||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 47899999999999999999987543
No 315
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.85 E-value=0.22 Score=55.03 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=38.7
Q ss_pred CCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 186 SEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.+.++|....+.++.+.+..-......|.|+|..|+||+++|+.+.+.-
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4568999999988888776533334457899999999999999998753
No 316
>PRK06547 hypothetical protein; Provisional
Probab=95.84 E-value=0.0084 Score=54.15 Aligned_cols=27 Identities=22% Similarity=0.107 Sum_probs=23.9
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhh
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
....+|+|.|.+|+||||||..+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998864
No 317
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.84 E-value=0.046 Score=49.37 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=25.9
Q ss_pred EEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
++.+.|++|+||||++..++..+...-..++.++
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5789999999999999999987765523344444
No 318
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.84 E-value=0.007 Score=54.89 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.5
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988754
No 319
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.82 E-value=0.015 Score=55.11 Aligned_cols=42 Identities=10% Similarity=0.118 Sum_probs=29.7
Q ss_pred HHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 196 IQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
..++.+.+.....+..+|+|+|+||.|||||..++...+...
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 334444444444567899999999999999999988876543
No 320
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.77 E-value=0.013 Score=53.26 Aligned_cols=114 Identities=9% Similarity=-0.064 Sum_probs=61.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHH--HH--HhCC------CC-c-c--c
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQIL--SQ--ILGE------NI-I-K--T 275 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll--~~--l~~~------~~-~-~--~ 275 (524)
...|.|+|-.|-||||.|...+-+...+--.+..+..++... ..+-..++..+- .. .+.. .. + . .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 457889999999999999998887655544455554333221 122222222210 00 0000 00 0 0 1
Q ss_pred CCchHHHHHHhcc-CCeEEEecCCC--------ChhhHHHHhCCCCCCCCCcEEEEecCCh
Q 044627 276 SIPPRYINKRLQQ-MKVCIILDNVD--------KFGHSEYLTGGLSRFGHGSRVIVTTRDK 327 (524)
Q Consensus 276 ~~~~~~l~~~L~~-~~~LlVlDdv~--------~~~~~~~l~~~~~~~~~gs~IIiTTR~~ 327 (524)
....+..++.+.. +-=|+|||.+. +.+++-.++.. ..++..||+|-|+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~---rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA---RPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc---CCCCCEEEEECCCC
Confidence 1223334444443 45699999993 22333333333 33678999999975
No 321
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.76 E-value=0.0063 Score=55.55 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=21.4
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+|.|.|++|+||||+|+.++.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998763
No 322
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.75 E-value=0.07 Score=60.54 Aligned_cols=192 Identities=13% Similarity=0.100 Sum_probs=93.2
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccc----cceeEee--eecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHH
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQF----EGRSFMA--NVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINK 284 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~wv~--~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~ 284 (524)
.-+.|+|.+|.||||+...++-....+. +..+|+. ..........-..+..-+...+..... .........+
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~e 300 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI--AKQLIEAHQE 300 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC--cchhhHHHHH
Confidence 3678999999999999999887543332 2223332 111111100000222222222222111 2223333357
Q ss_pred HhccCCeEEEecCCCChhh---------HHHHhCCCCCCCCCcEEEEecCChhhhhhcCCCeEEEcCCCCHHHHHHHHH-
Q 044627 285 RLQQMKVCIILDNVDKFGH---------SEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGVDYVYKVEGFNYRESLEIFC- 354 (524)
Q Consensus 285 ~L~~~~~LlVlDdv~~~~~---------~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l~~L~~~ea~~L~~- 354 (524)
.+...++|+.+|.++.... +..+.+.. +.+++|+|+|....-.....-...++..+.++.-.+...
T Consensus 301 ~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~----~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~ 376 (824)
T COG5635 301 LLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEY----PDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILY 376 (824)
T ss_pred HHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhc----cCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHH
Confidence 8889999999999975432 23333332 478899999865432222122334445544443332222
Q ss_pred -------HhhhcCCCCC-ccHH-H---HHHHHHHHhcCChHHHHHHHHHhc------CCCHHHHHHHHhcCC
Q 044627 355 -------YYAFRQNHCP-GDLL-V---LSDNVVDYANGSSLALNVLRSSFY------RKSKQHWENALHNPK 408 (524)
Q Consensus 355 -------~~~~~~~~~~-~~~~-~---~~~~i~~~~~g~PLal~~~~~~l~------~~~~~~w~~~l~~l~ 408 (524)
...++....+ ..+. . -...-++.....|+.|.+.+..-. ....+-|+.+++.+-
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~ 448 (824)
T COG5635 377 QWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALL 448 (824)
T ss_pred HHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHH
Confidence 1111111111 0011 1 112334445888999988874433 123455555555543
No 323
>PRK15115 response regulator GlrR; Provisional
Probab=95.73 E-value=0.16 Score=53.46 Aligned_cols=48 Identities=21% Similarity=0.066 Sum_probs=34.9
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..++|....+..+.+....-......|.|+|.+|+|||+||+.+.+.-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 357888877777666554322334567799999999999999887743
No 324
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.067 Score=59.57 Aligned_cols=104 Identities=13% Similarity=0.193 Sum_probs=68.5
Q ss_pred CCccchhhhHHhhhhhhhcCC----C--CceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHH
Q 044627 187 EDLVGVDSHIQRINSLLCIGL----P--DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLR 260 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~----~--~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 260 (524)
...+|-+.-+..|-+.+.... + +.-.+.+.|+.|+|||-||++++.-+.+..+.-+=++ +.+..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----------mse~~ 631 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----------MSEFQ 631 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec----------hhhhh
Confidence 356777777777777765421 1 3557789999999999999999998876666555444 33333
Q ss_pred HHHHHHHhCCCCcc-cCCchHHHHHHhccCCe-EEEecCCCChh
Q 044627 261 DQILSQILGENIIK-TSIPPRYINKRLQQMKV-CIILDNVDKFG 302 (524)
Q Consensus 261 ~~ll~~l~~~~~~~-~~~~~~~l~~~L~~~~~-LlVlDdv~~~~ 302 (524)
. ...+.+.++.. ..+....|-+.++++++ ++.||||+..+
T Consensus 632 e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 632 E--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred h--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 3 33443443332 34445577788888765 66699997543
No 325
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.70 E-value=0.0078 Score=52.51 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.6
Q ss_pred EEEeeccccchHHHHHHHHHhhhcc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
+|.|.|++|+||||+|+.+++.+.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 6899999999999999999998753
No 326
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.70 E-value=0.024 Score=57.52 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=57.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQ 288 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~ 288 (524)
.++-+=|||..|.|||.|+-.+|+.+...-.. ...+..+...+-..+..... .......+.+.+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~------------R~HFh~Fm~~vh~~l~~~~~--~~~~l~~va~~l~~ 126 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKR------------RVHFHEFMLDVHSRLHQLRG--QDDPLPQVADELAK 126 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccc------------cccccHHHHHHHHHHHHHhC--CCccHHHHHHHHHh
Confidence 46677899999999999999999965432110 11112222222222221111 22345566777788
Q ss_pred CCeEEEecCCC--Chhh---HHHHhCCCCCCCCCcEEEEecCChh
Q 044627 289 MKVCIILDNVD--KFGH---SEYLTGGLSRFGHGSRVIVTTRDKK 328 (524)
Q Consensus 289 ~~~LlVlDdv~--~~~~---~~~l~~~~~~~~~gs~IIiTTR~~~ 328 (524)
+..||+||.+. +..+ +..|...+- ..|. +||+|.|..
T Consensus 127 ~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~~ 168 (362)
T PF03969_consen 127 ESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNRP 168 (362)
T ss_pred cCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCCC
Confidence 88899999883 3332 444443332 3455 555555543
No 327
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.69 E-value=0.011 Score=53.98 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.1
Q ss_pred EEEeeccccchHHHHHHHHHhhhcc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
+|+|.|.+|+||||||..+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987653
No 328
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.69 E-value=0.013 Score=56.71 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=32.1
Q ss_pred hcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 204 CIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 204 ~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..+-+...++.|.|.+|+|||+||.+++.....+-..++|++
T Consensus 30 ~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 30 LGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 333345678999999999999999998876544455677877
No 329
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.68 E-value=0.045 Score=53.39 Aligned_cols=53 Identities=13% Similarity=0.044 Sum_probs=37.0
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhccc-ccceeEeeeecccccccCHHHHHHHHHHHH
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQ-FEGRSFMANVREESKRVELEHLRDQILSQI 267 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l 267 (524)
...++.|.|.+|+|||||+.+++.....+ -..++|++ .. .....+...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS----~E--~~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS----LE--EPVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE----cc--cCHHHHHHHHHHHH
Confidence 45688899999999999999998876544 45677777 22 23445555555543
No 330
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.68 E-value=0.013 Score=55.51 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=21.0
Q ss_pred EEeeccccchHHHHHHHHHhhhc
Q 044627 213 VRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
|.|.|++|+||||+|+.+++++.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998763
No 331
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.66 E-value=0.014 Score=57.96 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=27.5
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
+++.+.|-||+||||+|.+.+-.....-..++-++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 67899999999999999988887665544456665
No 332
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.65 E-value=0.018 Score=51.38 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=23.9
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
+.|.++||.|+||||+.+++++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999999876554
No 333
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.64 E-value=0.019 Score=55.27 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=31.3
Q ss_pred hhhHHhhhhhhhcC-CCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 193 DSHIQRINSLLCIG-LPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 193 ~~el~~l~~~L~~~-~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
+..+..|...+..+ ..++-++.+||.+|+||.-.++.+++.+
T Consensus 92 ~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 92 QLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 34445555555543 3457899999999999999999998854
No 334
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.63 E-value=0.04 Score=54.06 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=28.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhccc-c-cceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQ-F-EGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~wv~ 245 (524)
..++++|+|++|+||||++..++..+... - ..+..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 35699999999999999999998876543 1 3455555
No 335
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.21 Score=53.59 Aligned_cols=173 Identities=17% Similarity=0.119 Sum_probs=91.7
Q ss_pred CccchhhhHHhhhhhhhcCC-----------CCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCH
Q 044627 188 DLVGVDSHIQRINSLLCIGL-----------PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVEL 256 (524)
Q Consensus 188 ~~vGR~~el~~l~~~L~~~~-----------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 256 (524)
++=|.....+.+.+.+.-++ .-..-|.++|++|+|||-||-+++....- -|++ +- +.
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~-----~fis----vK---GP 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL-----RFIS----VK---GP 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe-----eEEE----ec---CH
Confidence 45566666666666554432 11345889999999999999999875432 2444 11 11
Q ss_pred HHHHHHHHHHHhCCCCcccCCchHHHHHH-hccCCeEEEecCCCChh-------------hHHHHhCCCCCC--CCCcEE
Q 044627 257 EHLRDQILSQILGENIIKTSIPPRYINKR-LQQMKVCIILDNVDKFG-------------HSEYLTGGLSRF--GHGSRV 320 (524)
Q Consensus 257 ~~l~~~ll~~l~~~~~~~~~~~~~~l~~~-L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~gs~I 320 (524)
+++...-+.. ++..+.+..+ -.-++++|.||..++.. .+..++..+... -.|.-|
T Consensus 736 -----ElL~KyIGaS----Eq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i 806 (952)
T KOG0735|consen 736 -----ELLSKYIGAS----EQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI 806 (952)
T ss_pred -----HHHHHHhccc----HHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE
Confidence 2233322222 2233333333 34589999999996431 244455444311 135455
Q ss_pred EE-ecCChhh----hhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHH
Q 044627 321 IV-TTRDKKV----LDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (524)
Q Consensus 321 Ii-TTR~~~~----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 384 (524)
+. |||..-+ +..-...+.+.-+..+..|-+++|....-.-..+ .....+.++.+..|..-|
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~---~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD---TDVDLECLAQKTDGFTGA 872 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc---cccchHHHhhhcCCCchh
Confidence 54 5664322 1111223344445556667777776554211111 122256677778877654
No 336
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.63 E-value=0.017 Score=62.79 Aligned_cols=77 Identities=12% Similarity=0.077 Sum_probs=55.7
Q ss_pred cCCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc-ccceeEeeeecccccccCHHHHH
Q 044627 182 HFGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ-FEGRSFMANVREESKRVELEHLR 260 (524)
Q Consensus 182 ~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~l~ 260 (524)
++..-+.++|.+..++.|...+..+ +.+.++|.+|+||||+|+.+++.+... ++...|+.+ ...+...+.
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-----p~~~~~~~~ 96 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-----PEDPNNPKI 96 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-----CCcchHHHH
Confidence 3445567999999999888877643 368899999999999999999876443 577888874 334555555
Q ss_pred HHHHHHH
Q 044627 261 DQILSQI 267 (524)
Q Consensus 261 ~~ll~~l 267 (524)
+.+...+
T Consensus 97 ~~v~~~~ 103 (637)
T PRK13765 97 RTVPAGK 103 (637)
T ss_pred HHHHHhc
Confidence 5555443
No 337
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.62 E-value=0.052 Score=51.92 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=20.3
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+..|.|++|+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999987643
No 338
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.61 E-value=0.022 Score=52.02 Aligned_cols=33 Identities=18% Similarity=0.016 Sum_probs=27.0
Q ss_pred EEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 213 VRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
+.|.|.+|+|||+||.+++......-..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 678999999999999999887655555677776
No 339
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.59 E-value=0.0095 Score=53.75 Aligned_cols=36 Identities=14% Similarity=0.040 Sum_probs=28.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc-ccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS-SQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~wv~ 245 (524)
...+.+.|+.|+|||.||+.+++.+. ......+-++
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 45788999999999999999999887 5555444444
No 340
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.56 E-value=0.051 Score=52.20 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.2
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
-.+++|.|..|+|||||++.++...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 341
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.54 E-value=0.022 Score=62.03 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=43.7
Q ss_pred CCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc-ccceeEee
Q 044627 185 NSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ-FEGRSFMA 245 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~ 245 (524)
..+.++|.+..++.+...+..+ +.+.++|++|+||||||+.+++.+... |...+++.
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP 73 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe
Confidence 3467899999888888877653 256699999999999999999987654 34444554
No 342
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.52 E-value=0.0095 Score=52.00 Aligned_cols=24 Identities=13% Similarity=0.255 Sum_probs=21.6
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+|.|.|.+|+||||+|+.++.++.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998763
No 343
>PRK13948 shikimate kinase; Provisional
Probab=95.51 E-value=0.012 Score=53.70 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=24.5
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
....|.|.|+.|+||||+++.+++++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4578899999999999999999998753
No 344
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.51 E-value=0.019 Score=54.47 Aligned_cols=48 Identities=23% Similarity=0.173 Sum_probs=34.1
Q ss_pred hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc-ccceeEee
Q 044627 198 RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ-FEGRSFMA 245 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~ 245 (524)
.|.+.|..+-+...++.|.|.+|+|||+||.+++.....+ -..++|+.
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 3445554443456799999999999999999988765554 55677777
No 345
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.49 E-value=0.076 Score=55.94 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=27.7
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccc--cceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQF--EGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~wv~ 245 (524)
...+|+|+|.+|+||||++..++..+.... ..+.++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 357999999999999999999888654432 2344444
No 346
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.48 E-value=0.031 Score=50.58 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=26.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..+++|.|..|.|||||.+.++..... ..+.+++.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~ 62 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLD 62 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEEC
Confidence 458999999999999999999875432 23444443
No 347
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.063 Score=48.51 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=26.7
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.-..++|.|..|.|||||++.++..... ..+.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~ 60 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVL 60 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEEC
Confidence 3468999999999999999999875432 33445543
No 348
>PRK05973 replicative DNA helicase; Provisional
Probab=95.46 E-value=0.037 Score=52.48 Aligned_cols=37 Identities=14% Similarity=-0.028 Sum_probs=29.1
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...++.|.|.+|+|||+||.+++.....+-..++|++
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4568899999999999999999886654445566665
No 349
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.45 E-value=0.53 Score=45.71 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=27.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...++++|.+|+||||++..++..+..+-..+.++.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~ 110 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 110 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence 468999999999999999998887654333455554
No 350
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.44 E-value=0.02 Score=50.51 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=18.6
Q ss_pred eeccccchHHHHHHHHHhhh
Q 044627 215 PWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 215 I~G~gGiGKTtLA~~~~~~~ 234 (524)
|.|+||+||||+|+.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 67999999999999999976
No 351
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.44 E-value=0.01 Score=53.36 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEeeccccchHHHHHHHHHhhhcc
Q 044627 213 VRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
|.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999987743
No 352
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.43 E-value=0.016 Score=59.01 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=37.2
Q ss_pred CCccchhhhHHhhhhhhhcC------------CCCceEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 187 EDLVGVDSHIQRINSLLCIG------------LPDFRMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~------------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
..+||.+...+.+.-.+... ....+-|.++|++|+|||+||+.++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 35777777777665444321 11246788999999999999999999875544
No 353
>PRK13949 shikimate kinase; Provisional
Probab=95.43 E-value=0.011 Score=53.22 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.9
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
-|.|.|++|+||||+++.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999999875
No 354
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.42 E-value=0.0099 Score=52.29 Aligned_cols=23 Identities=13% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEeeccccchHHHHHHHHHhhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36799999999999999998874
No 355
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.42 E-value=0.017 Score=58.45 Aligned_cols=94 Identities=11% Similarity=0.016 Sum_probs=55.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhccccc---ceeEeeeecccccccCHHHHHH--HHHHHHhCCCCcccCCchHHHHH
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFE---GRSFMANVREESKRVELEHLRD--QILSQILGENIIKTSIPPRYINK 284 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~l~~--~ll~~l~~~~~~~~~~~~~~l~~ 284 (524)
...|.|+|+.|+||||++..+.+.+....+ .++.+.+--+ ..+..... ....+. ............++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE----~~~~~~~~~~~~v~Q~--~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE----FVYDEIETISASVCQS--EIPRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce----Eeccccccccceeeee--eccccccCHHHHHHH
Confidence 468999999999999999999887654332 2333331111 11111100 000010 000002345567788
Q ss_pred HhccCCeEEEecCCCChhhHHHHhC
Q 044627 285 RLQQMKVCIILDNVDKFGHSEYLTG 309 (524)
Q Consensus 285 ~L~~~~~LlVlDdv~~~~~~~~l~~ 309 (524)
.|+..+-.+++..+.+.+..+..+.
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al~ 232 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAALE 232 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHHH
Confidence 8888899999999988887765443
No 356
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.41 E-value=0.012 Score=51.99 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.9
Q ss_pred EEeeccccchHHHHHHHHHhhhc
Q 044627 213 VRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
|.|+|++|+||||+|+.++..+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999998763
No 357
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.40 E-value=0.01 Score=54.26 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=21.1
Q ss_pred EEEeeccccchHHHHHHHHHhhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 358
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.38 E-value=0.047 Score=54.91 Aligned_cols=59 Identities=8% Similarity=0.116 Sum_probs=38.2
Q ss_pred HhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhc--c----cccceeEeeeecccccccCHHHH
Q 044627 197 QRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQIS--S----QFEGRSFMANVREESKRVELEHL 259 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~--~----~f~~~~wv~~~~~~~~~~~~~~l 259 (524)
..|..+|..+-....++-|+|.+|+|||+||..++-... . .-..++|++ ....+....+
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId----tE~~f~~eRl 174 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID----TEGTFRPQRL 174 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE----CCCCccHHHH
Confidence 445555654445577888999999999999988775321 1 112588888 4444444443
No 359
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.37 E-value=0.026 Score=53.61 Aligned_cols=47 Identities=17% Similarity=0.075 Sum_probs=34.0
Q ss_pred hhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 199 INSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 199 l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
|.+.|..+-+....+.|.|.+|+|||+||.+++......-..++|+.
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 44444334345678999999999999999998765444455677877
No 360
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.37 E-value=0.034 Score=52.84 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=28.1
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
+...++.|.|.+|+||||||.+++.....+-..++++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34568999999999999999887776533334556665
No 361
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.37 E-value=0.025 Score=54.49 Aligned_cols=42 Identities=10% Similarity=0.092 Sum_probs=32.0
Q ss_pred HhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 197 QRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
.++...+.....+..+|+|+|.||+|||||.-.+...+..+-
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G 79 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERG 79 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCC
Confidence 344455544455688999999999999999999888775543
No 362
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.35 E-value=0.01 Score=54.93 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.0
Q ss_pred EEEeeccccchHHHHHHHHHhhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
+|+|.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998866
No 363
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.34 E-value=0.0068 Score=55.59 Aligned_cols=91 Identities=13% Similarity=0.032 Sum_probs=51.2
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhC-CCC-c-c-cCCchHHHHHH
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILG-ENI-I-K-TSIPPRYINKR 285 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~-~~~-~-~-~~~~~~~l~~~ 285 (524)
...++|.|..|+|||||++.+...+.... ..+-+.+..+..... .... ++.. ... . . .....+.++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~-~~i~ied~~E~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDE-RIITIEDTAELQLPH------PNWV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCC-CEEEECCccccCCCC------CCEE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 46899999999999999999888665332 333333211111000 0000 0000 000 0 0 22345566667
Q ss_pred hccCCeEEEecCCCChhhHHHHh
Q 044627 286 LQQMKVCIILDNVDKFGHSEYLT 308 (524)
Q Consensus 286 L~~~~~LlVlDdv~~~~~~~~l~ 308 (524)
++..+-.++++.+.+.+.+..+.
T Consensus 97 lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred hccCCCEEEEEccCcHHHHHHHH
Confidence 77788889999998877655443
No 364
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.34 E-value=0.11 Score=46.83 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=36.6
Q ss_pred CchHHHHHHhccCCeEEEecCC----CChhhHHH--HhCCCCCCCCCcEEEEecCChhhhhhcC
Q 044627 277 IPPRYINKRLQQMKVCIILDNV----DKFGHSEY--LTGGLSRFGHGSRVIVTTRDKKVLDKYG 334 (524)
Q Consensus 277 ~~~~~l~~~L~~~~~LlVlDdv----~~~~~~~~--l~~~~~~~~~gs~IIiTTR~~~~~~~~~ 334 (524)
+..-.+.+.+-+++-+|+-|.- +-.-.|+- ++..++ ..|..||++|-+..+...+.
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 3345667777889999999965 32223332 222222 35889999999998887763
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.34 E-value=0.068 Score=56.92 Aligned_cols=131 Identities=17% Similarity=0.181 Sum_probs=67.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhccccc--------ceeEeeeec-ccccccCH------------HHHHHHHHHHHh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFE--------GRSFMANVR-EESKRVEL------------EHLRDQILSQIL 268 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~--------~~~wv~~~~-~~~~~~~~------------~~l~~~ll~~l~ 268 (524)
...|+|+|+.|+|||||.+.+.......-. .+.|+.--. ......++ ..-.+..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 457899999999999999999665432200 111111000 00000011 222223333322
Q ss_pred CCCCcc---------cCCchHHHHHHhccCCeEEEecCCC---ChhhHHHHhCCCCCCCCCcEEEEecCChhhhhhcCCC
Q 044627 269 GENIIK---------TSIPPRYINKRLQQMKVCIILDNVD---KFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGVD 336 (524)
Q Consensus 269 ~~~~~~---------~~~~~~~l~~~L~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~ 336 (524)
-...+. -+...-.+...+-.++-+||||.-. +.+.++.+...+..+ +|+ ||+.|-++....... .
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gt-vl~VSHDr~Fl~~va-~ 504 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGT-VLLVSHDRYFLDRVA-T 504 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCe-EEEEeCCHHHHHhhc-c
Confidence 221111 1112223445556778899999773 333344433333322 354 888899988877653 5
Q ss_pred eEEEcCC
Q 044627 337 YVYKVEG 343 (524)
Q Consensus 337 ~~~~l~~ 343 (524)
+++.+++
T Consensus 505 ~i~~~~~ 511 (530)
T COG0488 505 RIWLVED 511 (530)
T ss_pred eEEEEcC
Confidence 5666664
No 366
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.33 E-value=0.02 Score=57.65 Aligned_cols=53 Identities=25% Similarity=0.188 Sum_probs=41.5
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeE
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSF 243 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w 243 (524)
..++|++..+..+...+..+ +.+.+.|.+|+|||+||+.++..+...|-.+.+
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~ 76 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFVRIQC 76 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeEEEec
Confidence 34899988888887777653 357799999999999999999988755543333
No 367
>PRK13946 shikimate kinase; Provisional
Probab=95.32 E-value=0.013 Score=53.67 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.+.|.+.|++|+||||+++.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999999874
No 368
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.30 E-value=0.043 Score=54.95 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=34.3
Q ss_pred hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc------ccceeEee
Q 044627 198 RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ------FEGRSFMA 245 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~wv~ 245 (524)
.+.++|..+-....++-|+|.+|+|||+||.+++...... -..++|++
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 4445554444456788999999999999999998754321 13688888
No 369
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.30 E-value=0.013 Score=53.20 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=22.0
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3688999999999999999988754
No 370
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.30 E-value=0.033 Score=52.57 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=24.5
Q ss_pred hHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 195 HIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 195 el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..+.+...|... .+..|+|++|.|||+++..+...+
T Consensus 6 Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 445566666432 268899999999998887777765
No 371
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.29 E-value=0.02 Score=50.82 Aligned_cols=124 Identities=21% Similarity=0.196 Sum_probs=63.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCC-CcccCCchHHHHHHhcc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGEN-IIKTSIPPRYINKRLQQ 288 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~-~~~~~~~~~~l~~~L~~ 288 (524)
-.+++|.|..|.|||||++.++..+.. ..+.+++.... ... ....... ..+.-.. -...+...-.+...+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~-~~~-~~~~~~~----~~i~~~~qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKD-IAK-LPLEELR----RRIGYVPQLSGGQRQRVALARALLL 97 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEE-ccc-CCHHHHH----hceEEEeeCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999886542 34555555221 100 0011111 1110000 00011112234455566
Q ss_pred CCeEEEecCCC---ChhhHHHHhCCCCCC-CCCcEEEEecCChhhhhhcCCCeEEEc
Q 044627 289 MKVCIILDNVD---KFGHSEYLTGGLSRF-GHGSRVIVTTRDKKVLDKYGVDYVYKV 341 (524)
Q Consensus 289 ~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~IIiTTR~~~~~~~~~~~~~~~l 341 (524)
.+-++++|+.. +......+...+... ..+..+|++|.+....... ..+.+.+
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 78899999984 222222222222111 1246788888887665543 2344443
No 372
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.29 E-value=0.039 Score=50.66 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=21.9
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.++.|.|.+|+|||+++.+++..+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999888654
No 373
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.013 Score=53.56 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=23.9
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999876
No 374
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.28 E-value=0.021 Score=58.23 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=38.6
Q ss_pred CCccchhhhHHhhhhhhhcC--------C----CCceEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 187 EDLVGVDSHIQRINSLLCIG--------L----PDFRMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~--------~----~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
..++|.+...+.+..++... . ...+.|.++|++|+|||+||+.++..+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 45888888888777666320 0 1146789999999999999999999765443
No 375
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.26 E-value=0.02 Score=52.33 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=30.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.+++.|+|+.|+|||||+..+.......|...+...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 468999999999999999999998888886444443
No 376
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.068 Score=49.23 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=21.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-.+++|.|..|.|||||++.++..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 377
>PRK05439 pantothenate kinase; Provisional
Probab=95.25 E-value=0.022 Score=56.27 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=24.8
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
..+-+|+|.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999998886543
No 378
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.25 E-value=0.016 Score=53.60 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..+|.|.|++|+||||+|..++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 379
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.25 E-value=0.022 Score=55.49 Aligned_cols=26 Identities=23% Similarity=0.209 Sum_probs=22.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.+.+.++|++|+|||++++.+.+.+.
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred CCcEEEECCCCCchhHHHHhhhccCC
Confidence 35678999999999999999887643
No 380
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.25 E-value=0.082 Score=47.62 Aligned_cols=78 Identities=9% Similarity=0.053 Sum_probs=43.9
Q ss_pred EEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCC--cc---cCCchHHHHHHh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENI--IK---TSIPPRYINKRL 286 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~--~~---~~~~~~~l~~~L 286 (524)
.+.|.|.+|+|||++|..++.+... ..+++. ... ..-.+..+.+..+...... .. ...+.+.+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~ia----t~~-~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIA----TAQ-PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCc----CCC-CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 5789999999999999999876532 234444 222 2333455555444433222 11 223333343323
Q ss_pred ccCCeEEEecCC
Q 044627 287 QQMKVCIILDNV 298 (524)
Q Consensus 287 ~~~~~LlVlDdv 298 (524)
. +.-++++|.+
T Consensus 75 ~-~~~~VlID~L 85 (170)
T PRK05800 75 A-PGRCVLVDCL 85 (170)
T ss_pred C-CCCEEEehhH
Confidence 3 2337888887
No 381
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.23 E-value=0.041 Score=51.04 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=22.0
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
...+++|.|..|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998875
No 382
>PF13245 AAA_19: Part of AAA domain
Probab=95.22 E-value=0.031 Score=42.92 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=18.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.+++.|.|.+|.|||+++.+....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356778999999999666555443
No 383
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.21 E-value=0.1 Score=48.97 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=22.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
....++|.|..|.|||||++.++...
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998743
No 384
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.21 E-value=0.012 Score=55.40 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.7
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+|+|.|.+|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998775
No 385
>PRK15453 phosphoribulokinase; Provisional
Probab=95.20 E-value=0.025 Score=54.67 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=28.1
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
....+|+|.|.+|+||||+|+.+++.+...-...+.++
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~ 40 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVE 40 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEe
Confidence 34679999999999999999999876653322344444
No 386
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.20 E-value=0.063 Score=51.15 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=34.3
Q ss_pred HHHHHHhccCCeEEEecCCC---Ch---hhHHHHhCCCCCCCCCcEEEEecCChhhhhhc
Q 044627 280 RYINKRLQQMKVCIILDNVD---KF---GHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKY 333 (524)
Q Consensus 280 ~~l~~~L~~~~~LlVlDdv~---~~---~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~ 333 (524)
-.+.+.|..++=||+||.-. |. ..+-.++..+. ..|+.||++|-+-.....+
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHhh
Confidence 45667788899999999763 21 22334444443 2388999999987665543
No 387
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.18 E-value=0.014 Score=50.64 Aligned_cols=26 Identities=12% Similarity=0.340 Sum_probs=21.9
Q ss_pred EEEeeccccchHHHHHHHHHhhhccc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
.|+|+|+.|+|||||++.+++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 36899999999999999999875444
No 388
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.15 E-value=0.03 Score=52.07 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.0
Q ss_pred EEEeeccccchHHHHHHHHHhhhccc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
.|+|+|-||+||||+|..++.++...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~ 27 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK 27 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc
Confidence 58899999999999999977766544
No 389
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.15 E-value=0.022 Score=49.52 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=26.2
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcc-cccceeEee
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISS-QFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~wv~ 245 (524)
++|.|+|..|+|||||++.+.+.+.. .+...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 47899999999999999999998764 444444444
No 390
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.13 E-value=0.035 Score=46.79 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=31.6
Q ss_pred hhhHHhhhhhhhcC-CCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 193 DSHIQRINSLLCIG-LPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 193 ~~el~~l~~~L~~~-~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
+..+..|...+..+ ++++-|+.++|.+|+|||.+++.+++.+
T Consensus 35 ~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 35 EVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 34555666666543 3457889999999999999999888863
No 391
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.13 E-value=0.025 Score=56.36 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=38.6
Q ss_pred CCCCccchhhhHHhh---hhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccccc
Q 044627 185 NSEDLVGVDSHIQRI---NSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFE 239 (524)
Q Consensus 185 ~~~~~vGR~~el~~l---~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~ 239 (524)
....+||.....+.. .+++..+.-.-+.|.|.|++|.|||+||..+++.+....+
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~P 79 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVP 79 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCC
Confidence 356899987666543 4555554334688999999999999999999999987766
No 392
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.12 E-value=0.048 Score=60.23 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=55.5
Q ss_pred Hhhhhhhh-cCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc-
Q 044627 197 QRINSLLC-IGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK- 274 (524)
Q Consensus 197 ~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~- 274 (524)
..|..+|. .+-...+++-|+|.+|+||||||.+++......-..++|++ ....... ..+..++....+.
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId----~E~t~~~-----~~A~~lGvDl~~ll 116 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID----AEHALDP-----DYAKKLGVDTDSLL 116 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC----CccchhH-----HHHHHcCCChhHeE
Confidence 34555565 34455778999999999999999988776544455678887 3222221 2334443322111
Q ss_pred ------cCCchHHHHHHhc-cCCeEEEecCCC
Q 044627 275 ------TSIPPRYINKRLQ-QMKVCIILDNVD 299 (524)
Q Consensus 275 ------~~~~~~~l~~~L~-~~~~LlVlDdv~ 299 (524)
.+.....+...+. ++.-|||+|.+.
T Consensus 117 v~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 117 VSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred EecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 2223333344443 356789999984
No 393
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.12 E-value=1.1 Score=44.09 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=42.2
Q ss_pred cCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCCh-hhhhhc-CCCeEEEcCCCCHHHHHHHHHH
Q 044627 288 QMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDK-KVLDKY-GVDYVYKVEGFNYRESLEIFCY 355 (524)
Q Consensus 288 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~ 355 (524)
+++-++|+|+++.. .....|+..+...++++.+|++|.+. .++... .-...+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 34568899999754 45667777776656667777766654 444432 2245677766 66666666653
No 394
>PTZ00035 Rad51 protein; Provisional
Probab=95.11 E-value=0.088 Score=53.01 Aligned_cols=49 Identities=10% Similarity=0.130 Sum_probs=34.0
Q ss_pred HhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhc------ccccceeEee
Q 044627 197 QRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQIS------SQFEGRSFMA 245 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~------~~f~~~~wv~ 245 (524)
..|..+|..+-....++.|+|.+|+|||||+..++-... ..-..++|++
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyId 159 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYID 159 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEE
Confidence 345556655545578899999999999999998875432 1123456877
No 395
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.11 E-value=0.018 Score=53.68 Aligned_cols=31 Identities=13% Similarity=0.046 Sum_probs=24.7
Q ss_pred hhcCCCCceEEEeeccccchHHHHHHHHHhh
Q 044627 203 LCIGLPDFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 203 L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
+..+....+.|.|+|++|+|||||+..+...
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3334446788999999999999999998754
No 396
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.10 E-value=0.015 Score=51.45 Aligned_cols=20 Identities=15% Similarity=0.322 Sum_probs=18.6
Q ss_pred EEEeeccccchHHHHHHHHH
Q 044627 212 MVRPWDMHGIAKTDIARAIL 231 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~ 231 (524)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999987
No 397
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.08 E-value=0.037 Score=57.20 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=24.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.+.+|.+.|.+|+||||+|..++.++.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg 280 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLG 280 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999998764
No 398
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.08 E-value=0.064 Score=57.13 Aligned_cols=60 Identities=23% Similarity=0.397 Sum_probs=36.8
Q ss_pred HHHHHHhccCCeEEEecCCCC---hhhHHHHhCCCCCCCCCcEEEEecCChhhhhhcCCCeEEEcC
Q 044627 280 RYINKRLQQMKVCIILDNVDK---FGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKYGVDYVYKVE 342 (524)
Q Consensus 280 ~~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l~ 342 (524)
-.|.+.|-.++=+|+||.--+ .+.+..|-..+... +| .+||.|-++..+... +..++++.
T Consensus 162 v~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V-~t~I~~ld 224 (530)
T COG0488 162 VALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNV-ATHILELD 224 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHH-hhheEEec
Confidence 345566667888999998743 33444444443322 35 689999999887765 23344443
No 399
>PRK14530 adenylate kinase; Provisional
Probab=95.06 E-value=0.017 Score=54.33 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=21.7
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.|.|.|++|+||||+|+.+++.+.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998763
No 400
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.06 E-value=0.085 Score=48.16 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=24.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
...++.|.|.+|+||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999987643
No 401
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.04 E-value=0.013 Score=52.27 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.3
Q ss_pred EEeeccccchHHHHHHHHHhhhc
Q 044627 213 VRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
|.|.|++|+||||+|+.+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999998763
No 402
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.04 E-value=0.029 Score=60.44 Aligned_cols=50 Identities=12% Similarity=0.081 Sum_probs=39.2
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
+..+-|.+..+.|.++.........+|.|+|++|+||||+|+.++.++..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 34666777777777666555555668999999999999999999998764
No 403
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.04 E-value=0.063 Score=53.56 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=34.0
Q ss_pred hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc------ccceeEee
Q 044627 198 RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ------FEGRSFMA 245 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~wv~ 245 (524)
.+..+|..+-....++-|+|.+|+|||+|+.+++...... -..++|++
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 3445554443456788999999999999999998764321 12688888
No 404
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.03 E-value=0.078 Score=49.19 Aligned_cols=108 Identities=13% Similarity=0.039 Sum_probs=55.2
Q ss_pred EEEeeccccchHHHHHHHHHhhhccc---cc--ceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISSQ---FE--GRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRL 286 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~~---f~--~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L 286 (524)
-..|.|++|+|||||.+.+++-++.. |. .++-++--.+... .....-+..+...+....+ . -..+-+....
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag-~~~gvpq~~~g~R~dVld~--c-pk~~gmmmaI 214 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAG-CLNGVPQHGRGRRMDVLDP--C-PKAEGMMMAI 214 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhc-cccCCchhhhhhhhhhccc--c-hHHHHHHHHH
Confidence 36688999999999999999865443 32 2333431111110 0000001111111111110 0 0011112222
Q ss_pred c-cCCeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCC
Q 044627 287 Q-QMKVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRD 326 (524)
Q Consensus 287 ~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~ 326 (524)
+ ..+=++|+|.+...++..++...+. .|.+++.|..-
T Consensus 215 rsm~PEViIvDEIGt~~d~~A~~ta~~---~GVkli~TaHG 252 (308)
T COG3854 215 RSMSPEVIIVDEIGTEEDALAILTALH---AGVKLITTAHG 252 (308)
T ss_pred HhcCCcEEEEeccccHHHHHHHHHHHh---cCcEEEEeecc
Confidence 2 3577999999988777766665543 57777766543
No 405
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.03 E-value=0.061 Score=57.05 Aligned_cols=48 Identities=17% Similarity=0.103 Sum_probs=38.9
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..++|+...+.++.+.+..-......|.|+|.+|+|||++|+.+.+..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 469999999998888776544445568899999999999999987753
No 406
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.98 E-value=0.012 Score=57.33 Aligned_cols=126 Identities=19% Similarity=0.123 Sum_probs=69.1
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHH
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQ 266 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~ 266 (524)
+.+.-.....+++.++|...-.....|.|.|..|+||||++..+...+...-..++-+.+..+. .+.. ...
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~----~l~~-----~~~ 174 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL----RLPG-----PNQ 174 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S------SC-----SSE
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce----eecc-----cce
Confidence 3444444445566666654323457899999999999999999988766552233334321111 0000 000
Q ss_pred HhCCCCcccCCchHHHHHHhccCCeEEEecCCCChhhHHHHhCCCCCCCCCcEE-EEecC
Q 044627 267 ILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFGHSEYLTGGLSRFGHGSRV-IVTTR 325 (524)
Q Consensus 267 l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~I-IiTTR 325 (524)
.............+.+...|+..+=.++++.+.+.+....+... . .|..+ +-|..
T Consensus 175 ~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~-~---tGh~~~~tT~H 230 (270)
T PF00437_consen 175 IQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA-N---TGHLGSLTTLH 230 (270)
T ss_dssp EEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH-H---TT-EEEEEEEE
T ss_pred EEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh-c---cCCceeeeeee
Confidence 00000001335566777888888889999999888777664322 2 46666 55544
No 407
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.96 E-value=0.067 Score=51.15 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=37.4
Q ss_pred CCCCceEEEeeccccchHHHHHHHHHhhhccc-ccceeEeeeecccccccCHHHHHHHHHHH
Q 044627 206 GLPDFRMVRPWDMHGIAKTDIARAILNQISSQ-FEGRSFMANVREESKRVELEHLRDQILSQ 266 (524)
Q Consensus 206 ~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~l~~~ll~~ 266 (524)
+-....++.|.|.+|+|||+++.+++.....+ -..++|++ . ..+...+...++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s----~--E~~~~~~~~r~~~~ 64 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS----L--EMSKEQLLQRLLAS 64 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe----C--CCCHHHHHHHHHHH
Confidence 33445689999999999999999988876544 44566766 2 23445555555443
No 408
>PRK04182 cytidylate kinase; Provisional
Probab=94.96 E-value=0.02 Score=51.95 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=22.0
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+|+|.|+.|+||||+|+.+++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998864
No 409
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.94 E-value=0.074 Score=50.25 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=33.8
Q ss_pred hhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 199 INSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 199 l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
|.+.|..+-....++.|.|.+|+|||++|.+++.....+-..++|++
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44445434345678999999999999999999876544444566766
No 410
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.94 E-value=0.041 Score=53.61 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=32.0
Q ss_pred hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccc
Q 044627 198 RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEG 240 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~ 240 (524)
+.+.++.. .+..+|.|.|.+|+|||||...+.+.+......
T Consensus 94 ~~r~~~~~--~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~ 134 (290)
T PRK10463 94 RNRARFAA--RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPC 134 (290)
T ss_pred HHHHHHHh--cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCE
Confidence 34455543 358899999999999999999999988766543
No 411
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.93 E-value=0.18 Score=52.67 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=47.4
Q ss_pred ccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhc-ccccceeEeeeecccccccCHHHHHHHHHHHH
Q 044627 189 LVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQIS-SQFEGRSFMANVREESKRVELEHLRDQILSQI 267 (524)
Q Consensus 189 ~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l 267 (524)
..|...-+..|.+++. +-....++.|.|.+|+|||++|..++.... .+-..++|++ -..+...+...++...
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LEMSAEQLGERLLASK 246 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHHHH
Confidence 3344444555555554 334456889999999999999999987654 3333456665 2345666677666655
Q ss_pred hC
Q 044627 268 LG 269 (524)
Q Consensus 268 ~~ 269 (524)
.+
T Consensus 247 ~~ 248 (421)
T TIGR03600 247 SG 248 (421)
T ss_pred cC
Confidence 43
No 412
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.92 E-value=0.022 Score=51.49 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.3
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..|.|.|+.|.||||||+.++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4688999999999999999998764
No 413
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.019 Score=49.44 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=21.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.+-|.|+|.||+||||||.+++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3467899999999999999999754
No 414
>PRK14527 adenylate kinase; Provisional
Probab=94.91 E-value=0.022 Score=52.44 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=23.6
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...+|.|.|++|+||||+|+.+++++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999988763
No 415
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.91 E-value=0.059 Score=53.43 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=53.1
Q ss_pred hhhhhhhc-CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc--
Q 044627 198 RINSLLCI-GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK-- 274 (524)
Q Consensus 198 ~l~~~L~~-~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-- 274 (524)
.|...|.. +-+..+++-|+|..|+||||||.++.......-..++|++ .... +-...+..++......
T Consensus 40 ~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID----~e~~-----ld~~~a~~lGvdl~rllv 110 (322)
T PF00154_consen 40 ALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID----AEHA-----LDPEYAESLGVDLDRLLV 110 (322)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE----SSS--------HHHHHHTT--GGGEEE
T ss_pred ccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec----Cccc-----chhhHHHhcCccccceEE
Confidence 34455542 2244679999999999999999998887765556678887 2221 2223334443332221
Q ss_pred -----cCCchHHHHHHhcc-CCeEEEecCCCC
Q 044627 275 -----TSIPPRYINKRLQQ-MKVCIILDNVDK 300 (524)
Q Consensus 275 -----~~~~~~~l~~~L~~-~~~LlVlDdv~~ 300 (524)
.++....+...++. .--++|+|-|..
T Consensus 111 ~~P~~~E~al~~~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 111 VQPDTGEQALWIAEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp EE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT
T ss_pred ecCCcHHHHHHHHHHHhhcccccEEEEecCcc
Confidence 22333444444443 345888998853
No 416
>PRK13975 thymidylate kinase; Provisional
Probab=94.91 E-value=0.022 Score=52.57 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=23.6
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
..|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999998864
No 417
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.91 E-value=0.1 Score=52.75 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=25.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc--ccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS--SQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~wv~ 245 (524)
.++|.++|+.|+||||....++.++. ..-..+.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 78999999999999965555555433 3334556665
No 418
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.89 E-value=0.04 Score=49.54 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=24.7
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
..++++|+|..|+|||||+..+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 3679999999999999999999987754
No 419
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.86 E-value=0.081 Score=53.04 Aligned_cols=76 Identities=5% Similarity=0.038 Sum_probs=48.1
Q ss_pred hhhHHhhhhhhhcCC-CCceEEEeeccccchHHHHHHHHHhhhccc---ccceeEeeeecccccccCHHHHHHHHHHHHh
Q 044627 193 DSHIQRINSLLCIGL-PDFRMVRPWDMHGIAKTDIARAILNQISSQ---FEGRSFMANVREESKRVELEHLRDQILSQIL 268 (524)
Q Consensus 193 ~~el~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~ 268 (524)
+.-.+.|.+.|.... ....+|+|.|.=|+|||++.+.+.+.+... -..+++++.............+...+..++.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 344566777776643 568899999999999999999999987766 1223333322212223334555555555543
No 420
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.86 E-value=0.048 Score=54.50 Aligned_cols=40 Identities=13% Similarity=0.060 Sum_probs=29.4
Q ss_pred hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 198 RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
++.+.+........+|+|.|.+|+|||||+..+...+...
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3434333223457899999999999999999988876543
No 421
>PLN02200 adenylate kinase family protein
Probab=94.84 E-value=0.024 Score=53.96 Aligned_cols=25 Identities=12% Similarity=-0.011 Sum_probs=22.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
+.+|.|.|++|+||||+|+.+++.+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999998865
No 422
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.82 E-value=0.044 Score=54.55 Aligned_cols=107 Identities=14% Similarity=0.129 Sum_probs=59.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccccccc-CHHHHHHHHHHHHhCCC-CcccCCchHHHHHHhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRV-ELEHLRDQILSQILGEN-IIKTSIPPRYINKRLQ 287 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~-~~~~l~~~ll~~l~~~~-~~~~~~~~~~l~~~L~ 287 (524)
...++|.|..|+|||||++.+...+.... .++.+.+..+..... +... +.. .... ....-...+.+...|+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~----l~~--~~~~~~~~~~~~~~~l~~~Lr 216 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVH----LFY--SKGGQGLAKVTPKDLLQSCLR 216 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEE----EEe--cCCCCCcCccCHHHHHHHHhc
Confidence 46899999999999999999887664432 334444322221110 0000 000 0000 0002234556677788
Q ss_pred cCCeEEEecCCCChhhHHHHhCCCCCCCCCcE-EEEecCCh
Q 044627 288 QMKVCIILDNVDKFGHSEYLTGGLSRFGHGSR-VIVTTRDK 327 (524)
Q Consensus 288 ~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~-IIiTTR~~ 327 (524)
..+-.|++|.+...+.++.+. ... .|.. ++.|+...
T Consensus 217 ~~pd~ii~gE~r~~e~~~~l~-a~~---~g~~~~i~T~Ha~ 253 (308)
T TIGR02788 217 MRPDRIILGELRGDEAFDFIR-AVN---TGHPGSITTLHAG 253 (308)
T ss_pred CCCCeEEEeccCCHHHHHHHH-HHh---cCCCeEEEEEeCC
Confidence 888899999998876655433 322 2322 46666543
No 423
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.81 E-value=0.022 Score=51.31 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.6
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.|.|+|++|+||||+|+.+++++.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999999874
No 424
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.78 E-value=0.031 Score=44.54 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=22.0
Q ss_pred EEEeeccccchHHHHHHHHHhhhcc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
++.+.|.+|+||||++..++..++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999998765
No 425
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.77 E-value=0.11 Score=44.10 Aligned_cols=34 Identities=18% Similarity=-0.092 Sum_probs=25.3
Q ss_pred EEEeeccccchHHHHHHHHHhhhcc--cccceeEee
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISS--QFEGRSFMA 245 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~wv~ 245 (524)
.+.|.|..|.|||+.+..+...... ....++++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 4679999999999999887776543 345566665
No 426
>PRK13768 GTPase; Provisional
Probab=94.75 E-value=0.035 Score=53.57 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=26.4
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.++.|.|.||+||||++..++..+...-..++.++
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~ 37 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVN 37 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence 57889999999999999998887655433444443
No 427
>PHA02774 E1; Provisional
Probab=94.73 E-value=0.065 Score=56.78 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=33.6
Q ss_pred hHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 195 HIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 195 el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
-+..|..+|. +.++...+.|+|++|.|||.+|..+.+-+. ...+.|+.
T Consensus 420 fl~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~~L~--G~vi~fvN 467 (613)
T PHA02774 420 FLTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKFLK--GKVISFVN 467 (613)
T ss_pred HHHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHhC--CCEEEEEE
Confidence 4455666664 333456899999999999999999998764 22344554
No 428
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.71 E-value=0.022 Score=51.83 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.6
Q ss_pred eEEEeeccccchHHHHHHHHHhhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
++|+|.|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999998854
No 429
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.71 E-value=0.025 Score=50.78 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.7
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+|+|.|+.|+||||+|+.+++++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999988753
No 430
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.70 E-value=0.053 Score=53.73 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=35.7
Q ss_pred CCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccccc
Q 044627 186 SEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFE 239 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~ 239 (524)
++.++=.......+...|.. .+.|.|.|.+|+||||+|+.++..+...|-
T Consensus 44 d~~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCCccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 33444444455666666643 246889999999999999999998865543
No 431
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.70 E-value=0.072 Score=56.58 Aligned_cols=47 Identities=21% Similarity=0.094 Sum_probs=34.6
Q ss_pred hhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc-ccceeEee
Q 044627 199 INSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ-FEGRSFMA 245 (524)
Q Consensus 199 l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~ 245 (524)
|.+.|..+-...+++.|.|.+|+|||+||.+++..-..+ =..++|+.
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs 57 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT 57 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 344454444567899999999999999999997764333 35677877
No 432
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.70 E-value=0.026 Score=52.57 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=23.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..+|+|+|++|+||||||+.++....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46899999999999999999998653
No 433
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.69 E-value=0.15 Score=47.75 Aligned_cols=23 Identities=4% Similarity=-0.123 Sum_probs=20.7
Q ss_pred ceEEEeeccccchHHHHHHHHHh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
.+.+.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47889999999999999998874
No 434
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.67 E-value=0.03 Score=52.40 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=21.1
Q ss_pred ceEEEeeccccchHHHHHHHHHh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
..+++|+|.+|+|||||++.++-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 45899999999999999999886
No 435
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.66 E-value=0.7 Score=48.83 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=37.2
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..++|....+.++...+..-......+.|.|..|+||+++|+.+...-
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~ 181 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS 181 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC
Confidence 358888888888877776533344567899999999999999987743
No 436
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.057 Score=53.81 Aligned_cols=73 Identities=19% Similarity=0.265 Sum_probs=49.2
Q ss_pred cchhhhHHHHHhhccccccccccCCCCCCccchhhhHHhhhhhhhcC----------CCCceEEEeeccccchHHHHHHH
Q 044627 160 RHEAELVDEIVKDILKKIHDISHFGNSEDLVGVDSHIQRINSLLCIG----------LPDFRMVRPWDMHGIAKTDIARA 229 (524)
Q Consensus 160 ~~e~~~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~el~~l~~~L~~~----------~~~~~~v~I~G~gGiGKTtLA~~ 229 (524)
.++..+++.+-.+|.+.- |-..=+++.|.++-.+-|.+....+ ...=+-|.++|++|.|||-||++
T Consensus 189 ~~d~~Lve~lerdIl~~n----p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKA 264 (491)
T KOG0738|consen 189 GYDADLVEALERDILQRN----PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKA 264 (491)
T ss_pred cchHHHHHHHHHHHhccC----CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHH
Confidence 345566666666666543 2233356888887777776644321 12346788999999999999999
Q ss_pred HHhhhcc
Q 044627 230 ILNQISS 236 (524)
Q Consensus 230 ~~~~~~~ 236 (524)
++-.-..
T Consensus 265 vATEc~t 271 (491)
T KOG0738|consen 265 VATECGT 271 (491)
T ss_pred HHHhhcC
Confidence 9987653
No 437
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.62 E-value=0.054 Score=53.72 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=24.8
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
....+|+|.|.+|+|||||+..+...+..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999998886544
No 438
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.62 E-value=0.037 Score=57.19 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=23.1
Q ss_pred eEEEeeccccchHHHHHHHHHhhhccc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
..+.++|++|+|||+||+.++..+...
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVP 135 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 568899999999999999999876433
No 439
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.60 E-value=0.038 Score=53.83 Aligned_cols=34 Identities=9% Similarity=0.163 Sum_probs=29.2
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
++|+|.|.+|+|||||+..+...+..+. .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999988776 566555
No 440
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.59 E-value=0.15 Score=47.09 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=22.5
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
....++|.|..|.|||||.+.++.-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999988754
No 441
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.58 E-value=0.15 Score=47.27 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=23.1
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.-.+++|.|..|+|||||++.++....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 346899999999999999999887544
No 442
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.58 E-value=0.034 Score=52.70 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=26.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEG 240 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~ 240 (524)
....|.++||+|+||||+.+.++..+...+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 46688899999999999999998877666554
No 443
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.58 E-value=0.034 Score=54.42 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=26.0
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
+.|+|+|-||+||||++..++.-+...-..++-++
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD 35 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVG 35 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46889999999999999998886654433344444
No 444
>PRK14532 adenylate kinase; Provisional
Probab=94.58 E-value=0.025 Score=51.88 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=20.5
Q ss_pred EEeeccccchHHHHHHHHHhhhc
Q 044627 213 VRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
|.|.|++|+||||+|+.+++++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999988663
No 445
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.57 E-value=0.025 Score=51.98 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=20.3
Q ss_pred EEeeccccchHHHHHHHHHhhh
Q 044627 213 VRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999875
No 446
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.55 E-value=0.07 Score=49.08 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=22.6
Q ss_pred EEEeeccccchHHHHHHHHHhhhcc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
+|+|.|+.|+||||+++.+++.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999998754
No 447
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.54 E-value=0.1 Score=53.14 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=29.8
Q ss_pred eEEEeeccccchHHHHHHHHHhhh--cccccceeEee
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQI--SSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~--~~~f~~~~wv~ 245 (524)
.++.|.|.+|.|||.||..++.++ ........+++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 478999999999999999999988 56666667766
No 448
>PRK14529 adenylate kinase; Provisional
Probab=94.53 E-value=0.11 Score=48.86 Aligned_cols=91 Identities=15% Similarity=0.074 Sum_probs=47.8
Q ss_pred EEeeccccchHHHHHHHHHhhhcccc-cceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccC-C
Q 044627 213 VRPWDMHGIAKTDIARAILNQISSQF-EGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQM-K 290 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~-~ 290 (524)
|.|.|++|+||||+|+.++.++.-.+ +..-.+.. .+.....+....+.++..-..-+ .+.....+.+.+... .
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~--~i~~~t~lg~~i~~~i~~G~lvp---dei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFRE--HIGGGTELGKKAKEYIDRGDLVP---DDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhh--hccCCChHHHHHHHHHhccCcch---HHHHHHHHHHHHhccCC
Confidence 67899999999999999998764322 11111110 01112223333333332211111 233345556666432 3
Q ss_pred eEEEecCC-CChhhHHHHh
Q 044627 291 VCIILDNV-DKFGHSEYLT 308 (524)
Q Consensus 291 ~LlVlDdv-~~~~~~~~l~ 308 (524)
-=+|||+. .+.+|.+.|.
T Consensus 78 ~g~iLDGfPRt~~Qa~~l~ 96 (223)
T PRK14529 78 NGWLLDGFPRNKVQAEKLW 96 (223)
T ss_pred CcEEEeCCCCCHHHHHHHH
Confidence 45899999 4566655543
No 449
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.53 E-value=0.032 Score=51.10 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=23.1
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
+.++|.|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998864
No 450
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.52 E-value=0.41 Score=41.54 Aligned_cols=52 Identities=15% Similarity=0.129 Sum_probs=30.9
Q ss_pred HHHHHhhhhcceEEEEeecCccCchhhHHHHHHHHHhHhhcCCeeEeeEeEeccCcc
Q 044627 57 SALLNAIEESKISVIIFSKGYASSTWCLEELVKILECKKRKGQTVIPVFYNVDPSDV 113 (524)
Q Consensus 57 ~~i~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~~~~~~~~~~~v~Pi~~~v~p~~v 113 (524)
.++.+++++++..++|++.....+.+. .++...+.... .+. |++.-++..|.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k---~~iivlNK~DL 54 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRK---KNILLLNKADL 54 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCC---cEEEEEechhc
Confidence 567889999999999999765444442 24544444321 233 44444455554
No 451
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.51 E-value=0.025 Score=51.81 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=21.6
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..++|.|+.|+|||||++.++....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3688999999999999999977643
No 452
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.51 E-value=0.048 Score=54.22 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=43.8
Q ss_pred CCCccchhhhHHhhhhhhhcCC----CCceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 186 SEDLVGVDSHIQRINSLLCIGL----PDFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~~----~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
...|+|.++.++++.+.+...+ ..-+++.+.|+.|.||||||..+-+-+...
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 4579999999999999997632 347899999999999999999988766554
No 453
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.50 E-value=0.028 Score=50.22 Aligned_cols=21 Identities=14% Similarity=0.068 Sum_probs=17.7
Q ss_pred EEeeccccchHHHHHHHHHhh
Q 044627 213 VRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~ 233 (524)
|+|+|.+|+|||||+..++..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 454
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.49 E-value=0.08 Score=48.73 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=23.4
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
..|+|.|..|+||||+++.+++.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999987754
No 455
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.48 E-value=0.44 Score=46.62 Aligned_cols=126 Identities=10% Similarity=0.015 Sum_probs=67.9
Q ss_pred HhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc-------------ccceeEeeeecccccccCHHHHHHHH
Q 044627 197 QRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ-------------FEGRSFMANVREESKRVELEHLRDQI 263 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-------------f~~~~wv~~~~~~~~~~~~~~l~~~l 263 (524)
+.|...+..+. -.....++|+.|+||+++|..++..+-.. .+...|+...+. +....+..
T Consensus 7 ~~L~~~i~~~r-l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-~~~I~idq----- 79 (290)
T PRK05917 7 EALIQRVRDQK-VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-GRLHSIET----- 79 (290)
T ss_pred HHHHHHHHcCC-cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC-CCcCcHHH-----
Confidence 44555554432 35678899999999999999999865321 222333321000 00001111
Q ss_pred HHHHhCCCCcccCCchHHHHHHh-----ccCCeEEEecCCCC--hhhHHHHhCCCCCCCCCcEEEEecCC-hhhhhh-cC
Q 044627 264 LSQILGENIIKTSIPPRYINKRL-----QQMKVCIILDNVDK--FGHSEYLTGGLSRFGHGSRVIVTTRD-KKVLDK-YG 334 (524)
Q Consensus 264 l~~l~~~~~~~~~~~~~~l~~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiTTR~-~~~~~~-~~ 334 (524)
...+.+.+ .+..=++|+|+++. .+....++..+....+++.+|++|.+ ..++.. ..
T Consensus 80 ---------------iR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 80 ---------------PRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred ---------------HHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHh
Confidence 11122222 23445888999964 44566676666655567776666665 444433 22
Q ss_pred CCeEEEcCCC
Q 044627 335 VDYVYKVEGF 344 (524)
Q Consensus 335 ~~~~~~l~~L 344 (524)
-...+.+.++
T Consensus 145 Rcq~~~~~~~ 154 (290)
T PRK05917 145 RSLSIHIPME 154 (290)
T ss_pred cceEEEccch
Confidence 3456666655
No 456
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.47 E-value=0.095 Score=57.32 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=22.2
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
+...++|+|..|.|||||++.+...+
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 35689999999999999999987643
No 457
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.46 E-value=0.039 Score=48.94 Aligned_cols=26 Identities=8% Similarity=0.198 Sum_probs=23.0
Q ss_pred EEEeeccccchHHHHHHHHHhhhccc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
+++|+|+.|+|||||+..+...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999987654
No 458
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.42 E-value=0.1 Score=57.08 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=26.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
+...++|+|..|.|||||++.+..-+ . ..+.+.++
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i~ 409 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKIN 409 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEEC
Confidence 45689999999999999999988765 2 24444443
No 459
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.42 E-value=0.065 Score=54.49 Aligned_cols=94 Identities=10% Similarity=-0.020 Sum_probs=54.5
Q ss_pred eEEEeeccccchHHHHHHHHHhhhccccc--ceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhcc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFE--GRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQ 288 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~ 288 (524)
..+.|+|+.|+||||++..+.+.+....+ .++-+.+--+..- .... .+..................++..|+.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~-~~~~----~~~~~~q~evg~~~~~~~~~l~~aLR~ 224 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL-GSPD----DLLPPAQSQIGRDVDSFANGIRLALRR 224 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc-CCCc----eeecccccccCCCccCHHHHHHHhhcc
Confidence 47889999999999999999887654332 2333331111100 0000 000000000000022455678888888
Q ss_pred CCeEEEecCCCChhhHHHHhC
Q 044627 289 MKVCIILDNVDKFGHSEYLTG 309 (524)
Q Consensus 289 ~~~LlVlDdv~~~~~~~~l~~ 309 (524)
.+=.|+++.+.+.+..+..+.
T Consensus 225 ~PD~I~vGEiRd~et~~~al~ 245 (372)
T TIGR02525 225 APKIIGVGEIRDLETFQAAVL 245 (372)
T ss_pred CCCEEeeCCCCCHHHHHHHHH
Confidence 999999999999888775443
No 460
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=94.42 E-value=3.4 Score=39.73 Aligned_cols=56 Identities=20% Similarity=0.098 Sum_probs=33.7
Q ss_pred CCeEEEecCCCC--hhhHHHHhCCCCCCCCCcEEEEecCCh-hhhhhcC-CCeEEEcCCC
Q 044627 289 MKVCIILDNVDK--FGHSEYLTGGLSRFGHGSRVIVTTRDK-KVLDKYG-VDYVYKVEGF 344 (524)
Q Consensus 289 ~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~~~~-~~~~~~l~~L 344 (524)
.+=++|+|+++. ......|+..+....+++.+|++|.++ .++.... ....+.+.++
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~ 147 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSK 147 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCCh
Confidence 345778899864 445677777776656677777777654 4443332 1234555554
No 461
>PRK14531 adenylate kinase; Provisional
Probab=94.42 E-value=0.032 Score=50.97 Aligned_cols=24 Identities=13% Similarity=-0.043 Sum_probs=21.4
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.|.|.|++|+||||+++.++.++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998763
No 462
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=94.40 E-value=0.05 Score=45.63 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=25.7
Q ss_pred EEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 213 VRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
|.+.|.||+||||++..++..+...-..+..++
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999987765433444444
No 463
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.38 E-value=0.033 Score=51.52 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=20.8
Q ss_pred ceEEEeeccccchHHHHHHHHHh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
..+|+|+|+.|+||||+|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 35899999999999999999877
No 464
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.38 E-value=0.037 Score=51.76 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=47.1
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccc-cccCHHHHHHHHHHHHhCCCCcc----cC-Cch-----
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREES-KRVELEHLRDQILSQILGENIIK----TS-IPP----- 279 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~l~~~ll~~l~~~~~~~----~~-~~~----- 279 (524)
.-++|.|.+|+|||+|+..+++...... ++++. +. ....+.++.+.+...-.....-+ .+ ...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~d~--~V~~~----iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDADV--VVYAL----IGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTTTE--EEEEE----ESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcccccc--eeeee----ccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 5688999999999999999998775332 34443 22 22345555555533211111000 11 111
Q ss_pred ----HHHHHHh--ccCCeEEEecCCC
Q 044627 280 ----RYINKRL--QQMKVCIILDNVD 299 (524)
Q Consensus 280 ----~~l~~~L--~~~~~LlVlDdv~ 299 (524)
-.+.+++ +++++|+++||+.
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhH
Confidence 1122333 5789999999994
No 465
>PRK06761 hypothetical protein; Provisional
Probab=94.37 E-value=0.044 Score=53.40 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=24.0
Q ss_pred eEEEeeccccchHHHHHHHHHhhhccc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
++|.|.|++|+||||+++.+++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 579999999999999999999987653
No 466
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.36 E-value=0.081 Score=52.34 Aligned_cols=87 Identities=18% Similarity=0.133 Sum_probs=52.5
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccc--cceeEeeeecccccc-cCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQF--EGRSFMANVREESKR-VELEHLRDQILSQILGENIIKTSIPPRYINKRLQ 287 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~wv~~~~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~ 287 (524)
+.+.|+|..|+||||+++++++.+.... ..++-+.+..+..-. .+.. ++.. ..........++..|+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~~~~--~~~~~~~~~~l~~aLR 202 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------QLRT--SDDAISMTRLLKATLR 202 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------EEEe--cCCCCCHHHHHHHHhc
Confidence 4678999999999999999998775432 233334422221100 0000 0000 0001245577788888
Q ss_pred cCCeEEEecCCCChhhHHHH
Q 044627 288 QMKVCIILDNVDKFGHSEYL 307 (524)
Q Consensus 288 ~~~~LlVlDdv~~~~~~~~l 307 (524)
..+=.||+..+.+.+.++.+
T Consensus 203 ~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 203 LRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred CCCCEEEEeccCCHHHHHHH
Confidence 88889999999887766544
No 467
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.35 E-value=0.068 Score=52.70 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=42.2
Q ss_pred CCCCCccchhhhHHh---hhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccccc
Q 044627 184 GNSEDLVGVDSHIQR---INSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFE 239 (524)
Q Consensus 184 ~~~~~~vGR~~el~~---l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~ 239 (524)
...+.|||-..-.+. +.++..++.-.-+.|.|.|++|.|||+||..+++.+...-+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 456779997655443 45555555445788999999999999999999999876543
No 468
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.29 E-value=0.047 Score=53.59 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=26.4
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
++|+|+|-||+||||+|..++.-+...-..+.-++
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD 36 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVG 36 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 47888899999999999998887655433444443
No 469
>PRK12338 hypothetical protein; Provisional
Probab=94.28 E-value=0.038 Score=54.65 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=23.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+.+|.|.|.+|+||||+|..++.++.
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999999753
No 470
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.26 E-value=0.042 Score=55.08 Aligned_cols=50 Identities=18% Similarity=0.108 Sum_probs=37.2
Q ss_pred CCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
+.....++|.+..++.+.-.+.. .+..-+.+.|.+|+||||+|+.++.-+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~--~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID--PGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc--cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 34456789999988877643321 123458899999999999999998854
No 471
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.26 E-value=0.035 Score=55.03 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=21.8
Q ss_pred eEEEeeccccchHHHHHHHHHhhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.+|.+.|.+|+||||+|+.+++++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998876
No 472
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.24 E-value=1.6 Score=44.48 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=21.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
-..|+|+|+.|+|||||.+.+.-++
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCC
Confidence 3568999999999999999887653
No 473
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.23 E-value=0.29 Score=48.58 Aligned_cols=40 Identities=23% Similarity=0.051 Sum_probs=28.3
Q ss_pred cchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHH
Q 044627 190 VGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAIL 231 (524)
Q Consensus 190 vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~ 231 (524)
-+|..+-.--.++|.. +++..|.+.|.+|.|||-||.+..
T Consensus 227 ~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 227 RPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred CcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHH
Confidence 3455554444555554 458899999999999999886643
No 474
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.22 E-value=0.054 Score=49.04 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=30.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...|++-|++|+|||+|..+.++.++++|...+--.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 479999999999999999999999988887544433
No 475
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.22 E-value=0.066 Score=49.62 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=24.6
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..+.++.|.|.+|.||||++..+...+. ....+.++
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~ 48 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVID 48 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEe
Confidence 4578899999999999999999888764 23344444
No 476
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.21 E-value=0.05 Score=47.83 Aligned_cols=26 Identities=12% Similarity=0.314 Sum_probs=21.9
Q ss_pred EEEeeccccchHHHHHHHHHhhhccc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
++++.|.+|+||||++..++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 37889999999999999998876444
No 477
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.055 Score=51.81 Aligned_cols=52 Identities=33% Similarity=0.406 Sum_probs=40.5
Q ss_pred CCccchhhhHHhhhhhhhcCC-----------CCceEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 187 EDLVGVDSHIQRINSLLCIGL-----------PDFRMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~-----------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
.+.=|-+..+++|......+- ..++-|.++|.+|.|||-||++++++.+..|
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 456678888888887664321 2366788999999999999999999877655
No 478
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.20 E-value=0.051 Score=50.72 Aligned_cols=37 Identities=8% Similarity=0.207 Sum_probs=28.5
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.++++|+++|..|+|||||..++.+...... .+..+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~-~v~v~~ 56 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEV-KIAVIE 56 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCC-eEEEEE
Confidence 4689999999999999999999988754333 334443
No 479
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.19 E-value=0.059 Score=52.43 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=25.9
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
++|+|.|-||+||||++..++.-+...-..+.-++
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD 36 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 46777899999999999998887654333345454
No 480
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.19 E-value=0.072 Score=48.76 Aligned_cols=21 Identities=14% Similarity=-0.141 Sum_probs=18.5
Q ss_pred EEEeeccccchHHHHHHHHHh
Q 044627 212 MVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~ 232 (524)
++.|+|..|.||||+.+.++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999998873
No 481
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.18 E-value=0.094 Score=52.19 Aligned_cols=60 Identities=10% Similarity=0.217 Sum_probs=39.0
Q ss_pred HhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh--c----ccccceeEeeeecccccccCHHHHH
Q 044627 197 QRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI--S----SQFEGRSFMANVREESKRVELEHLR 260 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~--~----~~f~~~~wv~~~~~~~~~~~~~~l~ 260 (524)
..|-.+|..+-....++-|+|.+|+|||+|+.+++-.. . ..-..++|++ ....+....+.
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId----tE~~f~~eRi~ 148 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID----TEGTFRPDRIR 148 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE----cCCCCCHHHHH
Confidence 34555565444556788899999999999998876432 1 1123678888 44444455443
No 482
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.18 E-value=0.28 Score=47.41 Aligned_cols=120 Identities=16% Similarity=0.059 Sum_probs=73.3
Q ss_pred ccCCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHH
Q 044627 181 SHFGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLR 260 (524)
Q Consensus 181 ~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 260 (524)
.+......|+|-..-. ++..++.......+.+.++|+.|+|||+-++.+++... ..+.+. .++.+....+.
T Consensus 66 ~~~~~~~~~l~tkt~r-~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~p----~~~l~~----~~p~~~a~~~i 136 (297)
T COG2842 66 ALEKLAPDFLETKTVR-RIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSNP----NALLIE----ADPSYTALVLI 136 (297)
T ss_pred ccccccccccccchhH-hHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccCc----cceeec----CChhhHHHHHH
Confidence 4445566788765432 22333332222344888999999999999999988553 233333 45555666666
Q ss_pred HHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhC
Q 044627 261 DQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTG 309 (524)
Q Consensus 261 ~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~ 309 (524)
..+..................+..++.+..-+++.|+.+.. ..++.+..
T Consensus 137 ~~i~~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~ 187 (297)
T COG2842 137 LIICAAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRR 187 (297)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHH
Confidence 66666655554433444555666677888889999998643 33444443
No 483
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.17 E-value=0.038 Score=46.22 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=19.2
Q ss_pred EEeeccccchHHHHHHHHHhh
Q 044627 213 VRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~ 233 (524)
|.|.|..|+|||||.+.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 679999999999999999874
No 484
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.16 E-value=0.048 Score=49.04 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=22.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..++.|+|++|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999999876
No 485
>PRK01184 hypothetical protein; Provisional
Probab=94.16 E-value=0.036 Score=50.60 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=18.7
Q ss_pred eEEEeeccccchHHHHHHHHHhhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.+|+|+|++|+||||+|+ ++++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc
Confidence 478999999999999987 44443
No 486
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.15 E-value=0.042 Score=53.88 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=23.4
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..+.+|+|.|..|+||||||+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999988766554
No 487
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.14 E-value=0.044 Score=48.19 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.+++.|+|.+|+||||+.+.+.+.+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999998887766
No 488
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.14 E-value=0.28 Score=53.41 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=22.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.++..|+|.+|.||||++..+...+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~ 192 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALI 192 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999998887653
No 489
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.13 E-value=0.052 Score=48.10 Aligned_cols=36 Identities=6% Similarity=0.102 Sum_probs=29.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.++++|+|..|+|||||...+..+++.+--.+.-+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence 468999999999999999999998877654455444
No 490
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.13 E-value=0.053 Score=50.79 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=24.9
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEe
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFM 244 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv 244 (524)
++|+|.|-||+||||++..++..+...-..+.-+
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~G~rvLli 34 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQV 34 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 4688899999999999988888665432233334
No 491
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.13 E-value=0.044 Score=52.32 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=21.3
Q ss_pred eeccccchHHHHHHHHHhhhcccccceeEe
Q 044627 215 PWDMHGIAKTDIARAILNQISSQFEGRSFM 244 (524)
Q Consensus 215 I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv 244 (524)
|.|++|+||||+++.+.+.+...-..++.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~v 30 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIV 30 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEE
Confidence 579999999999999998765553333333
No 492
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.12 E-value=0.048 Score=57.94 Aligned_cols=29 Identities=21% Similarity=0.148 Sum_probs=25.0
Q ss_pred CCCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 206 GLPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 206 ~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..++..+|+|.|.+|+||||||+.++..+
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 33457899999999999999999998764
No 493
>PRK13695 putative NTPase; Provisional
Probab=94.06 E-value=0.052 Score=49.10 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.0
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
-|+|+|.+|+|||||+..+++.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999888764
No 494
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.06 E-value=0.064 Score=55.22 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=23.6
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
..|.|+|++|+|||+||+.++..+...|
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 4788999999999999999998764333
No 495
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.05 E-value=0.038 Score=51.74 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=20.0
Q ss_pred EEeeccccchHHHHHHHHHhhh
Q 044627 213 VRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998865
No 496
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.05 E-value=0.042 Score=49.87 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=22.4
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.+++|+|++|.|||||++.++..+.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998764
No 497
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.05 E-value=0.16 Score=56.86 Aligned_cols=34 Identities=9% Similarity=-0.100 Sum_probs=25.3
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEe
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFM 244 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv 244 (524)
+++.|.|.+|.||||++..+..-+...-..+.++
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ 402 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGA 402 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 5788999999999999999887655432234444
No 498
>PLN02348 phosphoribulokinase
Probab=94.04 E-value=0.052 Score=55.03 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=25.7
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
+...+|+|.|.+|+||||||+.+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45789999999999999999999997754
No 499
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.02 E-value=0.046 Score=49.96 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=24.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
.++|.|+|++|+|||||+..+.......|
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~ 30 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAF 30 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcce
Confidence 36789999999999999999988764344
No 500
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.02 E-value=0.053 Score=52.04 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=25.7
Q ss_pred EEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
+|+|.|.+|+||||+|+.+.+.+...-..+..++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~ 34 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVE 34 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 5899999999999999999887754332344443
Done!