Query 044627
Match_columns 524
No_of_seqs 377 out of 2991
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 08:40:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 1E-47 3.6E-52 341.4 10.8 171 8-183 4-175 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 5E-47 1.7E-51 341.9 10.3 171 7-179 30-202 (204)
3 2a5y_B CED-4; apoptosis; HET: 100.0 2.8E-43 9.7E-48 377.3 18.0 294 190-497 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 6.1E-39 2.1E-43 375.9 25.6 301 181-496 118-452 (1249)
5 1z6t_A APAF-1, apoptotic prote 100.0 1.3E-37 4.5E-42 337.2 22.7 326 181-521 118-495 (591)
6 1vt4_I APAF-1 related killer D 100.0 1.2E-37 4E-42 340.1 19.6 298 187-518 128-459 (1221)
7 3h16_A TIR protein; bacteria T 100.0 1.4E-30 4.7E-35 230.7 5.6 120 9-129 17-137 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.9 4E-26 1.4E-30 198.9 0.7 136 5-145 3-145 (146)
9 2js7_A Myeloid differentiation 99.9 8.5E-23 2.9E-27 180.9 4.6 101 8-110 12-117 (160)
10 1fyx_A TOLL-like receptor 2; b 99.9 6.5E-23 2.2E-27 179.8 1.3 97 9-107 2-103 (149)
11 2j67_A TOLL like receptor 10; 99.8 1.7E-22 5.8E-27 181.7 3.5 100 7-108 30-134 (178)
12 1t3g_A X-linked interleukin-1 99.8 1E-21 3.4E-26 173.8 6.4 100 11-110 1-114 (159)
13 2qen_A Walker-type ATPase; unk 99.8 1.8E-18 6.3E-23 174.0 22.2 288 181-490 6-349 (350)
14 2fna_A Conserved hypothetical 99.8 5.3E-18 1.8E-22 171.0 22.3 284 181-489 7-356 (357)
15 1w5s_A Origin recognition comp 99.7 5E-17 1.7E-21 167.5 18.0 282 184-475 19-371 (412)
16 2qby_B CDC6 homolog 3, cell di 99.7 1.1E-14 3.6E-19 148.6 23.3 272 186-475 19-339 (384)
17 2v1u_A Cell division control p 99.6 3.3E-14 1.1E-18 144.8 22.3 277 184-475 16-351 (387)
18 2qby_A CDC6 homolog 1, cell di 99.6 2.4E-14 8.3E-19 145.7 18.0 281 184-475 17-348 (386)
19 1fnn_A CDC6P, cell division co 99.6 1.4E-13 4.8E-18 140.4 22.8 301 185-496 15-387 (389)
20 3j0a_A TOLL-like receptor 5; m 99.6 1.8E-15 6.1E-20 170.2 6.6 100 9-110 667-774 (844)
21 1njg_A DNA polymerase III subu 99.4 7.2E-12 2.5E-16 118.4 17.9 196 184-391 20-230 (250)
22 2chg_A Replication factor C sm 99.3 8.5E-11 2.9E-15 109.4 17.9 187 184-389 14-204 (226)
23 1sxj_B Activator 1 37 kDa subu 99.1 3E-10 1E-14 112.4 12.4 187 184-391 18-212 (323)
24 1hqc_A RUVB; extended AAA-ATPa 99.1 5.7E-09 1.9E-13 103.4 20.9 260 184-484 9-307 (324)
25 1iqp_A RFCS; clamp loader, ext 99.0 3E-09 1E-13 105.4 15.5 187 184-389 22-212 (327)
26 2chq_A Replication factor C sm 99.0 1.3E-08 4.5E-13 100.3 16.8 178 184-388 14-203 (319)
27 1jr3_A DNA polymerase III subu 98.9 1.3E-08 4.4E-13 102.9 16.4 193 185-389 14-221 (373)
28 3pfi_A Holliday junction ATP-d 98.9 7.1E-08 2.4E-12 96.1 18.6 260 185-488 27-327 (338)
29 3te6_A Regulatory protein SIR3 98.9 1.6E-08 5.3E-13 99.2 13.2 166 187-358 20-212 (318)
30 3bos_A Putative DNA replicatio 98.8 9.4E-09 3.2E-13 96.9 9.8 174 185-389 26-217 (242)
31 3h4m_A Proteasome-activating n 98.8 2.6E-08 9E-13 96.7 10.7 182 182-388 12-230 (285)
32 1jbk_A CLPB protein; beta barr 98.8 2.7E-08 9.2E-13 89.9 10.1 50 185-236 20-69 (195)
33 3d8b_A Fidgetin-like protein 1 98.7 4.2E-07 1.4E-11 91.3 18.0 203 161-391 62-297 (357)
34 2z4s_A Chromosomal replication 98.7 1E-07 3.5E-12 98.5 13.7 202 186-408 104-333 (440)
35 1sxj_D Activator 1 41 kDa subu 98.7 4.8E-07 1.6E-11 90.5 16.8 193 184-387 34-233 (353)
36 1sxj_A Activator 1 95 kDa subu 98.6 3.3E-07 1.1E-11 96.7 15.7 190 184-388 36-252 (516)
37 1d2n_A N-ethylmaleimide-sensit 98.6 6.6E-07 2.2E-11 86.2 16.2 168 187-380 33-228 (272)
38 3uk6_A RUVB-like 2; hexameric 98.6 1.2E-06 4.2E-11 88.1 17.8 197 186-389 43-303 (368)
39 2qz4_A Paraplegin; AAA+, SPG7, 98.6 3.5E-07 1.2E-11 87.4 13.2 183 186-389 5-222 (262)
40 1l8q_A Chromosomal replication 98.6 7.9E-07 2.7E-11 88.0 15.9 179 185-385 9-204 (324)
41 3pvs_A Replication-associated 98.6 7.2E-07 2.5E-11 92.0 14.7 197 183-406 22-243 (447)
42 3eie_A Vacuolar protein sortin 98.6 1.6E-06 5.4E-11 85.8 16.7 185 183-390 14-229 (322)
43 2zan_A Vacuolar protein sortin 98.6 2.5E-06 8.7E-11 88.1 18.9 186 183-390 130-346 (444)
44 3b9p_A CG5977-PA, isoform A; A 98.5 1.8E-06 6.3E-11 84.1 16.8 185 182-390 16-234 (297)
45 1sxj_E Activator 1 40 kDa subu 98.5 8.5E-07 2.9E-11 88.8 14.4 196 184-388 11-236 (354)
46 2qp9_X Vacuolar protein sortin 98.5 8.4E-07 2.9E-11 89.0 13.6 183 184-389 48-261 (355)
47 3u61_B DNA polymerase accessor 98.5 1.3E-06 4.5E-11 86.3 14.5 177 184-384 23-211 (324)
48 1a5t_A Delta prime, HOLB; zinc 98.5 3.3E-06 1.1E-10 83.8 17.4 171 193-387 8-203 (334)
49 3syl_A Protein CBBX; photosynt 98.5 1.6E-06 5.6E-11 84.9 13.8 150 188-359 32-219 (309)
50 1xwi_A SKD1 protein; VPS4B, AA 98.5 6.7E-06 2.3E-10 81.2 18.2 182 185-390 10-224 (322)
51 3cf0_A Transitional endoplasmi 98.4 4.2E-06 1.4E-10 81.9 16.1 176 185-384 13-223 (301)
52 2p65_A Hypothetical protein PF 98.4 9E-07 3.1E-11 79.4 10.4 50 185-236 20-69 (187)
53 3vfd_A Spastin; ATPase, microt 98.4 5.6E-06 1.9E-10 84.1 17.3 185 183-390 111-327 (389)
54 3pxg_A Negative regulator of g 98.3 7.3E-06 2.5E-10 85.2 15.4 150 184-357 177-338 (468)
55 3n70_A Transport activator; si 98.2 1.8E-06 6E-11 74.7 7.3 47 188-234 2-48 (145)
56 1in4_A RUVB, holliday junction 98.2 6E-05 2E-09 74.7 19.2 258 186-485 24-321 (334)
57 2r62_A Cell division protease 98.2 3E-06 1E-10 81.3 9.1 154 184-357 8-196 (268)
58 3hu3_A Transitional endoplasmi 98.2 7.1E-06 2.4E-10 85.5 11.3 180 187-389 204-415 (489)
59 1sxj_C Activator 1 40 kDa subu 98.1 4.6E-05 1.6E-09 75.7 16.3 179 186-385 24-208 (340)
60 1qvr_A CLPB protein; coiled co 98.1 1.4E-05 4.7E-10 89.6 13.6 51 184-236 167-217 (854)
61 2gno_A DNA polymerase III, gam 98.1 1.3E-05 4.5E-10 78.3 11.8 145 191-357 1-152 (305)
62 4b4t_J 26S protease regulatory 98.1 3.7E-05 1.3E-09 77.2 14.9 173 185-383 146-355 (405)
63 3ec2_A DNA replication protein 98.1 5.3E-06 1.8E-10 74.4 7.8 117 192-326 19-142 (180)
64 1ofh_A ATP-dependent HSL prote 98.1 1.9E-05 6.4E-10 77.2 12.2 50 187-236 15-76 (310)
65 4b4t_H 26S protease regulatory 98.1 3.4E-05 1.2E-09 78.6 13.7 171 186-382 208-415 (467)
66 1lv7_A FTSH; alpha/beta domain 98.1 3.9E-05 1.3E-09 73.0 13.3 181 184-387 9-223 (257)
67 4b4t_L 26S protease subunit RP 98.1 1.5E-05 5.2E-10 81.3 10.7 173 184-382 178-387 (437)
68 2bjv_A PSP operon transcriptio 98.0 1.6E-05 5.6E-10 76.0 10.0 49 187-235 6-54 (265)
69 1r6b_X CLPA protein; AAA+, N-t 98.0 4.3E-05 1.5E-09 84.5 14.7 151 184-357 183-362 (758)
70 4fcw_A Chaperone protein CLPB; 98.0 2.5E-05 8.6E-10 76.4 11.5 50 187-236 17-73 (311)
71 1ojl_A Transcriptional regulat 98.0 6.5E-05 2.2E-09 73.4 14.0 48 187-234 2-49 (304)
72 3pxi_A Negative regulator of g 98.0 4.8E-05 1.6E-09 84.1 14.4 150 184-357 177-338 (758)
73 4b4t_K 26S protease regulatory 98.0 1.4E-05 4.7E-10 81.4 9.2 54 185-238 170-234 (428)
74 4b4t_M 26S protease regulatory 98.0 2E-05 6.7E-10 80.3 10.3 175 182-382 176-387 (434)
75 3co5_A Putative two-component 98.0 2.3E-06 7.8E-11 73.8 2.3 49 187-235 4-52 (143)
76 2w58_A DNAI, primosome compone 97.9 4.1E-05 1.4E-09 69.8 9.8 60 186-245 24-89 (202)
77 2ce7_A Cell division protein F 97.9 0.00017 5.8E-09 74.6 14.5 173 186-382 15-221 (476)
78 4b4t_I 26S protease regulatory 97.8 5.5E-05 1.9E-09 76.3 10.2 173 184-382 179-388 (437)
79 2c9o_A RUVB-like 1; hexameric 97.8 0.00024 8.4E-09 73.5 15.3 50 186-235 36-88 (456)
80 3m6a_A ATP-dependent protease 97.8 0.00071 2.4E-08 71.5 18.7 155 188-357 82-266 (543)
81 3t15_A Ribulose bisphosphate c 97.7 0.00028 9.5E-09 68.5 12.3 29 209-237 35-63 (293)
82 3cf2_A TER ATPase, transitiona 97.7 0.00012 4E-09 80.3 9.8 172 187-382 204-407 (806)
83 1eiw_A Hypothetical protein MT 97.6 8.4E-05 2.9E-09 60.3 6.1 71 11-104 3-73 (111)
84 2kjq_A DNAA-related protein; s 97.6 3.3E-05 1.1E-09 67.0 3.8 36 210-245 36-71 (149)
85 1ixz_A ATP-dependent metallopr 97.6 0.00039 1.3E-08 65.8 11.2 174 185-382 14-221 (254)
86 3pxi_A Negative regulator of g 97.5 0.00036 1.2E-08 77.0 11.5 147 187-356 491-674 (758)
87 1iy2_A ATP-dependent metallopr 97.5 0.00041 1.4E-08 66.7 10.5 175 184-382 37-245 (278)
88 2dhr_A FTSH; AAA+ protein, hex 97.5 0.0007 2.4E-08 70.4 12.1 171 185-382 29-236 (499)
89 2x8a_A Nuclear valosin-contain 97.4 0.0015 5E-08 62.7 13.4 150 187-357 10-191 (274)
90 1ypw_A Transitional endoplasmi 97.4 0.00052 1.8E-08 76.0 11.5 151 186-357 203-385 (806)
91 1um8_A ATP-dependent CLP prote 97.4 0.00072 2.4E-08 68.0 10.5 27 210-236 72-98 (376)
92 1r6b_X CLPA protein; AAA+, N-t 97.2 0.00063 2.1E-08 75.2 8.5 49 187-235 458-513 (758)
93 1qvr_A CLPB protein; coiled co 97.1 0.0012 4E-08 73.9 10.3 50 187-236 558-614 (854)
94 2qgz_A Helicase loader, putati 97.1 0.0017 5.8E-08 63.3 9.7 54 192-245 133-188 (308)
95 2cvh_A DNA repair and recombin 96.8 0.0026 8.7E-08 58.3 7.9 34 209-245 19-52 (220)
96 1g5t_A COB(I)alamin adenosyltr 96.8 0.0005 1.7E-08 61.9 2.7 113 211-327 29-163 (196)
97 3hr8_A Protein RECA; alpha and 96.8 0.0036 1.2E-07 62.0 9.1 49 197-245 47-96 (356)
98 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00085 2.9E-08 65.1 4.2 33 210-245 123-155 (331)
99 2r44_A Uncharacterized protein 96.6 0.00086 3E-08 66.1 3.3 48 187-238 27-74 (331)
100 1jr3_D DNA polymerase III, del 96.6 0.048 1.6E-06 53.7 15.9 164 198-387 8-183 (343)
101 2b8t_A Thymidine kinase; deoxy 96.5 0.0017 5.7E-08 60.0 3.8 107 210-326 12-125 (223)
102 3io5_A Recombination and repai 96.5 0.0048 1.7E-07 59.6 7.1 34 212-245 30-65 (333)
103 1rz3_A Hypothetical protein rb 96.5 0.0034 1.2E-07 56.9 5.9 44 192-235 3-47 (201)
104 3cf2_A TER ATPase, transitiona 96.5 0.0033 1.1E-07 68.8 6.7 151 186-357 476-661 (806)
105 1qhx_A CPT, protein (chloramph 96.4 0.0014 4.8E-08 58.0 3.1 25 211-235 4-28 (178)
106 3hws_A ATP-dependent CLP prote 96.4 0.0021 7.3E-08 64.2 4.5 47 189-235 17-76 (363)
107 1ye8_A Protein THEP1, hypothet 96.4 0.031 1.1E-06 49.5 11.6 24 212-235 2-25 (178)
108 1u94_A RECA protein, recombina 96.4 0.0079 2.7E-07 59.7 8.5 48 198-245 50-98 (356)
109 1u0j_A DNA replication protein 96.4 0.013 4.4E-07 55.4 9.4 39 196-234 90-128 (267)
110 2orw_A Thymidine kinase; TMTK, 96.4 0.00055 1.9E-08 61.5 -0.1 25 211-235 4-28 (184)
111 2zr9_A Protein RECA, recombina 96.3 0.0086 2.9E-07 59.4 8.4 48 198-245 48-96 (349)
112 1zu4_A FTSY; GTPase, signal re 96.3 0.013 4.3E-07 57.4 9.1 37 209-245 104-140 (320)
113 1xp8_A RECA protein, recombina 96.2 0.011 3.7E-07 59.0 8.6 48 198-245 61-109 (366)
114 3jvv_A Twitching mobility prot 96.2 0.0015 5E-08 65.0 2.0 111 210-330 123-234 (356)
115 3kb2_A SPBC2 prophage-derived 96.2 0.0023 8E-08 56.1 3.2 25 211-235 2-26 (173)
116 3c8u_A Fructokinase; YP_612366 96.1 0.0042 1.4E-07 56.7 4.5 28 208-235 20-47 (208)
117 1v5w_A DMC1, meiotic recombina 96.1 0.014 4.8E-07 57.7 8.5 47 199-245 111-163 (343)
118 3trf_A Shikimate kinase, SK; a 96.1 0.0029 1E-07 56.3 3.1 26 210-235 5-30 (185)
119 2eyu_A Twitching motility prot 96.1 0.0056 1.9E-07 58.1 5.2 110 209-329 24-135 (261)
120 2z43_A DNA repair and recombin 96.0 0.008 2.7E-07 59.0 6.4 37 209-245 106-148 (324)
121 3vaa_A Shikimate kinase, SK; s 96.0 0.0032 1.1E-07 57.0 3.3 26 210-235 25-50 (199)
122 3bh0_A DNAB-like replicative h 96.0 0.012 4.2E-07 57.4 7.7 53 208-266 66-118 (315)
123 1g8p_A Magnesium-chelatase 38 96.0 0.0031 1.1E-07 62.3 3.2 50 184-235 21-70 (350)
124 3nbx_X ATPase RAVA; AAA+ ATPas 96.0 0.0042 1.4E-07 64.6 4.1 45 187-235 22-66 (500)
125 3lw7_A Adenylate kinase relate 95.9 0.0032 1.1E-07 55.2 2.8 23 211-234 2-24 (179)
126 1vma_A Cell division protein F 95.9 0.04 1.4E-06 53.4 10.7 37 209-245 103-139 (306)
127 1nks_A Adenylate kinase; therm 95.9 0.0062 2.1E-07 54.4 4.5 26 211-236 2-27 (194)
128 3tlx_A Adenylate kinase 2; str 95.9 0.0056 1.9E-07 57.4 4.3 41 194-234 13-53 (243)
129 3hyn_A Putative signal transdu 95.9 0.026 8.9E-07 49.2 7.9 94 26-122 31-134 (189)
130 3uie_A Adenylyl-sulfate kinase 95.9 0.0068 2.3E-07 54.8 4.7 27 209-235 24-50 (200)
131 1ly1_A Polynucleotide kinase; 95.8 0.0046 1.6E-07 54.6 3.3 22 211-232 3-24 (181)
132 1odf_A YGR205W, hypothetical 3 95.8 0.0081 2.8E-07 57.9 5.0 29 208-236 29-57 (290)
133 1zuh_A Shikimate kinase; alpha 95.8 0.0048 1.6E-07 54.0 3.1 26 210-235 7-32 (168)
134 1j8m_F SRP54, signal recogniti 95.8 0.014 4.9E-07 56.4 6.7 36 210-245 98-133 (297)
135 1kag_A SKI, shikimate kinase I 95.8 0.004 1.4E-07 54.7 2.5 25 211-235 5-29 (173)
136 2rhm_A Putative kinase; P-loop 95.7 0.0063 2.1E-07 54.4 3.9 25 210-234 5-29 (193)
137 3iij_A Coilin-interacting nucl 95.7 0.004 1.4E-07 55.2 2.5 26 210-235 11-36 (180)
138 1ex7_A Guanylate kinase; subst 95.7 0.0042 1.4E-07 55.6 2.5 28 211-238 2-29 (186)
139 2ga8_A Hypothetical 39.9 kDa p 95.7 0.0066 2.3E-07 59.7 4.0 46 193-238 5-52 (359)
140 2iyv_A Shikimate kinase, SK; t 95.6 0.0047 1.6E-07 54.9 2.6 25 211-235 3-27 (184)
141 2yvu_A Probable adenylyl-sulfa 95.6 0.0098 3.3E-07 53.0 4.7 28 209-236 12-39 (186)
142 1knq_A Gluconate kinase; ALFA/ 95.6 0.0078 2.7E-07 53.0 4.0 25 210-234 8-32 (175)
143 1via_A Shikimate kinase; struc 95.6 0.0047 1.6E-07 54.5 2.5 24 212-235 6-29 (175)
144 3t61_A Gluconokinase; PSI-biol 95.6 0.005 1.7E-07 55.8 2.7 25 210-234 18-42 (202)
145 3e70_C DPA, signal recognition 95.6 0.029 1E-06 54.9 8.4 29 209-237 128-156 (328)
146 1zp6_A Hypothetical protein AT 95.6 0.0061 2.1E-07 54.5 3.2 24 210-233 9-32 (191)
147 4eun_A Thermoresistant glucoki 95.6 0.0085 2.9E-07 54.2 4.1 25 210-234 29-53 (200)
148 1kht_A Adenylate kinase; phosp 95.6 0.0062 2.1E-07 54.3 3.0 26 211-236 4-29 (192)
149 1tue_A Replication protein E1; 95.5 0.0096 3.3E-07 53.8 4.2 40 196-236 45-84 (212)
150 2xxa_A Signal recognition part 95.5 0.057 1.9E-06 55.0 10.5 37 209-245 99-136 (433)
151 3sr0_A Adenylate kinase; phosp 95.5 0.015 5.3E-07 52.8 5.6 23 212-234 2-24 (206)
152 2r2a_A Uncharacterized protein 95.5 0.038 1.3E-06 49.9 8.2 22 212-233 7-28 (199)
153 2ze6_A Isopentenyl transferase 95.5 0.007 2.4E-07 57.1 3.4 25 211-235 2-26 (253)
154 2vli_A Antibiotic resistance p 95.5 0.005 1.7E-07 54.6 2.1 26 210-235 5-30 (183)
155 2c95_A Adenylate kinase 1; tra 95.5 0.007 2.4E-07 54.2 3.2 26 210-235 9-34 (196)
156 1kgd_A CASK, peripheral plasma 95.5 0.0075 2.6E-07 53.6 3.3 26 210-235 5-30 (180)
157 2plr_A DTMP kinase, probable t 95.5 0.012 4.3E-07 53.3 4.8 27 211-237 5-31 (213)
158 1e6c_A Shikimate kinase; phosp 95.5 0.0059 2E-07 53.5 2.5 25 211-235 3-27 (173)
159 1tev_A UMP-CMP kinase; ploop, 95.4 0.008 2.7E-07 53.7 3.4 26 210-235 3-28 (196)
160 1uj2_A Uridine-cytidine kinase 95.4 0.0084 2.9E-07 56.5 3.6 28 209-236 21-48 (252)
161 1y63_A LMAJ004144AAA protein; 95.4 0.0083 2.8E-07 53.5 3.4 24 210-233 10-33 (184)
162 2dr3_A UPF0273 protein PH0284; 95.4 0.009 3.1E-07 55.6 3.8 37 209-245 22-58 (247)
163 1ukz_A Uridylate kinase; trans 95.4 0.0097 3.3E-07 53.8 3.8 26 209-234 14-39 (203)
164 3tau_A Guanylate kinase, GMP k 95.4 0.0083 2.9E-07 54.7 3.3 28 209-236 7-34 (208)
165 2jaq_A Deoxyguanosine kinase; 95.4 0.0074 2.5E-07 54.4 3.0 25 212-236 2-26 (205)
166 4a1f_A DNAB helicase, replicat 95.4 0.019 6.7E-07 56.3 6.1 54 209-268 45-98 (338)
167 1nn5_A Similar to deoxythymidy 95.4 0.011 3.9E-07 53.7 4.2 28 210-237 9-36 (215)
168 2pjz_A Hypothetical protein ST 95.3 0.045 1.6E-06 51.8 8.4 25 210-234 30-54 (263)
169 2bwj_A Adenylate kinase 5; pho 95.3 0.0077 2.6E-07 54.1 2.9 26 210-235 12-37 (199)
170 3dm5_A SRP54, signal recogniti 95.3 0.041 1.4E-06 55.9 8.5 29 209-237 99-127 (443)
171 3cm0_A Adenylate kinase; ATP-b 95.3 0.0087 3E-07 53.2 3.2 26 210-235 4-29 (186)
172 1gvn_B Zeta; postsegregational 95.3 0.013 4.5E-07 56.3 4.6 27 209-235 32-58 (287)
173 2ewv_A Twitching motility prot 95.3 0.015 5.1E-07 58.2 5.1 108 209-328 135-245 (372)
174 2qor_A Guanylate kinase; phosp 95.3 0.0078 2.7E-07 54.6 2.8 27 209-235 11-37 (204)
175 2pt5_A Shikimate kinase, SK; a 95.3 0.0093 3.2E-07 52.0 3.2 24 212-235 2-25 (168)
176 1xjc_A MOBB protein homolog; s 95.3 0.014 4.7E-07 51.3 4.2 29 209-237 3-31 (169)
177 2w0m_A SSO2452; RECA, SSPF, un 95.2 0.012 4.2E-07 54.1 4.1 36 210-245 23-58 (235)
178 1qf9_A UMP/CMP kinase, protein 95.2 0.0099 3.4E-07 53.0 3.3 26 210-235 6-31 (194)
179 3a00_A Guanylate kinase, GMP k 95.2 0.01 3.4E-07 53.0 3.3 28 211-238 2-29 (186)
180 1n0w_A DNA repair protein RAD5 95.2 0.029 1E-06 52.0 6.6 37 209-245 23-65 (243)
181 1uf9_A TT1252 protein; P-loop, 95.2 0.01 3.6E-07 53.4 3.4 26 208-233 6-31 (203)
182 2yhs_A FTSY, cell division pro 95.2 0.038 1.3E-06 56.9 7.8 36 209-245 292-327 (503)
183 1aky_A Adenylate kinase; ATP:A 95.2 0.0097 3.3E-07 54.7 3.2 26 210-235 4-29 (220)
184 2cdn_A Adenylate kinase; phosp 95.2 0.012 4.1E-07 53.1 3.7 26 210-235 20-45 (201)
185 2wwf_A Thymidilate kinase, put 95.2 0.011 3.7E-07 53.8 3.4 28 210-237 10-37 (212)
186 3fwy_A Light-independent proto 95.1 0.016 5.3E-07 56.6 4.6 38 208-245 46-83 (314)
187 3p32_A Probable GTPase RV1496/ 95.1 0.027 9.2E-07 55.9 6.3 41 196-236 65-105 (355)
188 3a4m_A L-seryl-tRNA(SEC) kinas 95.1 0.012 4.2E-07 55.6 3.5 26 210-235 4-29 (260)
189 2j9r_A Thymidine kinase; TK1, 95.1 0.032 1.1E-06 50.8 6.1 108 210-327 28-138 (214)
190 1g41_A Heat shock protein HSLU 95.1 0.014 4.7E-07 59.5 4.0 51 188-238 16-78 (444)
191 2p5t_B PEZT; postsegregational 95.0 0.018 6.3E-07 54.1 4.7 27 209-235 31-57 (253)
192 2pbr_A DTMP kinase, thymidylat 95.0 0.011 3.9E-07 52.7 3.1 24 212-235 2-25 (195)
193 2z0h_A DTMP kinase, thymidylat 95.0 0.029 1E-06 50.1 5.9 25 212-236 2-26 (197)
194 1cke_A CK, MSSA, protein (cyti 95.0 0.011 3.9E-07 54.3 3.1 25 211-235 6-30 (227)
195 3umf_A Adenylate kinase; rossm 95.0 0.014 4.7E-07 53.6 3.6 27 208-234 27-53 (217)
196 3dzd_A Transcriptional regulat 95.0 0.23 7.7E-06 49.4 12.8 48 187-234 129-176 (368)
197 1ny5_A Transcriptional regulat 95.0 0.3 1E-05 48.9 13.8 47 187-233 137-183 (387)
198 4a74_A DNA repair and recombin 95.0 0.02 6.8E-07 52.6 4.7 37 209-245 24-66 (231)
199 2zts_A Putative uncharacterize 95.0 0.019 6.7E-07 53.4 4.6 37 209-245 29-66 (251)
200 2bdt_A BH3686; alpha-beta prot 95.0 0.013 4.3E-07 52.4 3.2 23 211-233 3-25 (189)
201 2qt1_A Nicotinamide riboside k 95.0 0.014 4.8E-07 53.0 3.5 26 209-234 20-45 (207)
202 3tr0_A Guanylate kinase, GMP k 94.9 0.013 4.6E-07 52.8 3.3 25 210-234 7-31 (205)
203 2j41_A Guanylate kinase; GMP, 94.9 0.013 4.6E-07 52.8 3.3 25 210-234 6-30 (207)
204 3tqc_A Pantothenate kinase; bi 94.9 0.02 6.8E-07 55.8 4.6 47 189-235 69-117 (321)
205 2if2_A Dephospho-COA kinase; a 94.9 0.012 4.2E-07 53.2 2.9 21 212-232 3-23 (204)
206 2grj_A Dephospho-COA kinase; T 94.9 0.014 4.7E-07 52.6 3.1 26 209-234 11-36 (192)
207 1zd8_A GTP:AMP phosphotransfer 94.9 0.012 4.2E-07 54.3 2.9 26 210-235 7-32 (227)
208 3asz_A Uridine kinase; cytidin 94.9 0.016 5.5E-07 52.7 3.6 27 209-235 5-31 (211)
209 1zak_A Adenylate kinase; ATP:A 94.8 0.012 4.2E-07 54.0 2.8 26 210-235 5-30 (222)
210 3fb4_A Adenylate kinase; psych 94.8 0.014 4.8E-07 53.3 3.1 23 212-234 2-24 (216)
211 1jjv_A Dephospho-COA kinase; P 94.8 0.014 4.7E-07 53.0 3.0 22 211-232 3-24 (206)
212 3k1j_A LON protease, ATP-depen 94.8 0.015 5.3E-07 62.1 3.8 49 185-237 39-87 (604)
213 3ney_A 55 kDa erythrocyte memb 94.8 0.016 5.3E-07 52.3 3.2 27 209-235 18-44 (197)
214 2bbw_A Adenylate kinase 4, AK4 94.8 0.015 5.2E-07 54.4 3.3 26 210-235 27-52 (246)
215 2pez_A Bifunctional 3'-phospho 94.8 0.018 6E-07 50.9 3.5 26 210-235 5-30 (179)
216 3ice_A Transcription terminati 94.7 0.047 1.6E-06 54.2 6.7 29 210-238 174-202 (422)
217 2v3c_C SRP54, signal recogniti 94.7 0.028 9.7E-07 57.2 5.4 36 210-245 99-134 (432)
218 3dl0_A Adenylate kinase; phosp 94.7 0.015 5.2E-07 53.1 3.1 23 212-234 2-24 (216)
219 3e1s_A Exodeoxyribonuclease V, 94.7 0.088 3E-06 55.7 9.2 35 210-244 204-238 (574)
220 3bgw_A DNAB-like replicative h 94.7 0.039 1.3E-06 56.5 6.3 38 208-245 195-232 (444)
221 1gtv_A TMK, thymidylate kinase 94.7 0.012 4E-07 53.6 2.2 24 212-235 2-25 (214)
222 2v54_A DTMP kinase, thymidylat 94.7 0.017 5.9E-07 52.0 3.3 25 210-234 4-28 (204)
223 4gp7_A Metallophosphoesterase; 94.6 0.015 5.2E-07 51.1 2.7 22 210-231 9-30 (171)
224 2r6a_A DNAB helicase, replicat 94.6 0.16 5.6E-06 52.0 10.9 38 208-245 201-239 (454)
225 4e22_A Cytidylate kinase; P-lo 94.6 0.018 6.1E-07 54.2 3.3 26 210-235 27-52 (252)
226 2ehv_A Hypothetical protein PH 94.6 0.02 6.8E-07 53.4 3.6 37 209-245 29-66 (251)
227 3nwj_A ATSK2; P loop, shikimat 94.6 0.014 4.8E-07 54.8 2.5 25 211-235 49-73 (250)
228 2hf9_A Probable hydrogenase ni 94.5 0.036 1.2E-06 50.7 5.1 42 194-237 24-65 (226)
229 3ake_A Cytidylate kinase; CMP 94.5 0.02 6.7E-07 51.8 3.2 24 212-235 4-27 (208)
230 2wsm_A Hydrogenase expression/ 94.5 0.031 1.1E-06 51.0 4.6 45 191-237 13-57 (221)
231 1m7g_A Adenylylsulfate kinase; 94.5 0.023 7.8E-07 51.8 3.6 26 210-235 25-50 (211)
232 1xx6_A Thymidine kinase; NESG, 94.4 0.016 5.5E-07 52.0 2.5 108 210-327 8-118 (191)
233 2q6t_A DNAB replication FORK h 94.4 0.17 6E-06 51.7 10.6 65 197-268 188-253 (444)
234 3upu_A ATP-dependent DNA helic 94.4 0.081 2.8E-06 54.4 8.1 35 211-245 46-81 (459)
235 3cmw_A Protein RECA, recombina 94.4 0.076 2.6E-06 62.6 8.5 49 197-245 718-767 (1706)
236 3kl4_A SRP54, signal recogniti 94.4 0.039 1.3E-06 56.0 5.4 36 209-244 96-131 (433)
237 3cmu_A Protein RECA, recombina 94.3 0.089 3E-06 62.9 9.0 92 199-299 1415-1515(2050)
238 3be4_A Adenylate kinase; malar 94.3 0.017 5.9E-07 52.9 2.5 25 211-235 6-30 (217)
239 3a8t_A Adenylate isopentenyltr 94.3 0.021 7.2E-07 55.8 3.2 26 210-235 40-65 (339)
240 2pt7_A CAG-ALFA; ATPase, prote 94.3 0.082 2.8E-06 51.8 7.5 105 211-328 172-276 (330)
241 1rj9_A FTSY, signal recognitio 94.3 0.035 1.2E-06 53.8 4.7 28 209-236 101-128 (304)
242 2r8r_A Sensor protein; KDPD, P 94.2 0.031 1.1E-06 51.3 3.9 35 211-245 7-41 (228)
243 1lvg_A Guanylate kinase, GMP k 94.2 0.019 6.5E-07 51.8 2.5 25 210-234 4-28 (198)
244 2jeo_A Uridine-cytidine kinase 94.2 0.027 9.2E-07 52.7 3.6 26 209-234 24-49 (245)
245 1ak2_A Adenylate kinase isoenz 94.2 0.025 8.6E-07 52.4 3.3 26 210-235 16-41 (233)
246 1vht_A Dephospho-COA kinase; s 94.2 0.028 9.6E-07 51.4 3.5 23 210-232 4-26 (218)
247 3r20_A Cytidylate kinase; stru 94.1 0.024 8.2E-07 52.5 3.0 26 210-235 9-34 (233)
248 2f6r_A COA synthase, bifunctio 94.1 0.026 9E-07 54.0 3.4 24 209-232 74-97 (281)
249 1e4v_A Adenylate kinase; trans 94.1 0.024 8.3E-07 51.7 3.0 23 212-234 2-24 (214)
250 3d3q_A TRNA delta(2)-isopenten 94.1 0.026 8.9E-07 55.3 3.4 25 211-235 8-32 (340)
251 3crm_A TRNA delta(2)-isopenten 94.1 0.024 8.2E-07 55.2 3.0 25 211-235 6-30 (323)
252 3zq6_A Putative arsenical pump 94.1 0.064 2.2E-06 52.4 6.2 36 210-245 14-49 (324)
253 2xb4_A Adenylate kinase; ATP-b 94.1 0.026 8.9E-07 52.0 3.1 24 212-235 2-25 (223)
254 2i1q_A DNA repair and recombin 94.0 0.076 2.6E-06 51.8 6.6 35 199-233 87-121 (322)
255 1sky_E F1-ATPase, F1-ATP synth 94.0 0.054 1.9E-06 55.3 5.6 31 211-241 152-182 (473)
256 3aez_A Pantothenate kinase; tr 94.0 0.031 1E-06 54.4 3.5 28 208-235 88-115 (312)
257 1puj_A YLQF, conserved hypothe 94.0 0.4 1.4E-05 45.7 11.4 29 55-83 13-41 (282)
258 3zvl_A Bifunctional polynucleo 94.0 0.08 2.7E-06 53.7 6.8 26 209-234 257-282 (416)
259 3end_A Light-independent proto 94.0 0.043 1.5E-06 53.1 4.6 37 209-245 40-76 (307)
260 1cr0_A DNA primase/helicase; R 93.9 0.083 2.8E-06 50.7 6.6 37 209-245 34-71 (296)
261 1a7j_A Phosphoribulokinase; tr 93.9 0.017 5.9E-07 55.6 1.7 27 209-235 4-30 (290)
262 1cp2_A CP2, nitrogenase iron p 93.9 0.044 1.5E-06 51.8 4.5 35 211-245 2-36 (269)
263 2px0_A Flagellar biosynthesis 93.8 0.044 1.5E-06 52.9 4.3 37 209-245 104-141 (296)
264 1yrb_A ATP(GTP)binding protein 93.8 0.053 1.8E-06 50.9 4.9 27 209-235 13-39 (262)
265 3exa_A TRNA delta(2)-isopenten 93.8 0.034 1.2E-06 53.7 3.4 26 210-235 3-28 (322)
266 1znw_A Guanylate kinase, GMP k 93.8 0.031 1.1E-06 50.7 3.0 25 210-234 20-44 (207)
267 1z6g_A Guanylate kinase; struc 93.7 0.029 9.8E-07 51.5 2.7 25 210-234 23-47 (218)
268 1pzn_A RAD51, DNA repair and r 93.7 0.049 1.7E-06 53.9 4.6 46 200-245 121-172 (349)
269 3b9q_A Chloroplast SRP recepto 93.7 0.048 1.6E-06 52.7 4.4 28 209-236 99-126 (302)
270 2afh_E Nitrogenase iron protei 93.7 0.051 1.7E-06 52.1 4.5 36 210-245 2-37 (289)
271 1sq5_A Pantothenate kinase; P- 93.6 0.061 2.1E-06 52.2 5.0 27 209-235 79-105 (308)
272 1htw_A HI0065; nucleotide-bind 93.6 0.043 1.5E-06 47.6 3.5 26 209-234 32-57 (158)
273 3kjh_A CO dehydrogenase/acetyl 93.6 0.063 2.1E-06 49.9 4.9 33 213-245 3-35 (254)
274 1np6_A Molybdopterin-guanine d 93.6 0.054 1.8E-06 47.8 4.1 27 210-236 6-32 (174)
275 3cmu_A Protein RECA, recombina 93.6 0.14 4.9E-06 61.1 8.8 55 191-245 363-418 (2050)
276 3foz_A TRNA delta(2)-isopenten 93.6 0.044 1.5E-06 52.8 3.8 26 210-235 10-35 (316)
277 4eaq_A DTMP kinase, thymidylat 93.6 0.087 3E-06 48.7 5.8 28 209-236 25-52 (229)
278 3hjn_A DTMP kinase, thymidylat 93.6 0.08 2.7E-06 47.7 5.4 34 212-245 2-35 (197)
279 2f1r_A Molybdopterin-guanine d 93.6 0.03 1E-06 49.3 2.4 26 211-236 3-28 (171)
280 1svm_A Large T antigen; AAA+ f 93.6 0.054 1.8E-06 54.1 4.5 28 208-235 167-194 (377)
281 1ltq_A Polynucleotide kinase; 93.5 0.037 1.3E-06 53.4 3.3 23 211-233 3-25 (301)
282 1s96_A Guanylate kinase, GMP k 93.5 0.037 1.3E-06 50.8 3.1 26 210-235 16-41 (219)
283 2qmh_A HPR kinase/phosphorylas 93.5 0.037 1.3E-06 49.7 2.8 25 210-234 34-58 (205)
284 3ug7_A Arsenical pump-driving 93.5 0.098 3.3E-06 51.7 6.2 38 208-245 24-61 (349)
285 1q57_A DNA primase/helicase; d 93.5 0.12 4.3E-06 53.7 7.4 54 208-267 240-294 (503)
286 1g8f_A Sulfate adenylyltransfe 93.5 0.055 1.9E-06 56.2 4.5 48 189-236 374-421 (511)
287 3cmw_A Protein RECA, recombina 93.5 0.15 5E-06 60.3 8.5 50 196-245 368-418 (1706)
288 4edh_A DTMP kinase, thymidylat 93.3 0.13 4.3E-06 47.0 6.3 28 210-237 6-33 (213)
289 3io3_A DEHA2D07832P; chaperone 93.3 0.09 3.1E-06 51.9 5.7 37 209-245 17-55 (348)
290 1ls1_A Signal recognition part 93.3 0.066 2.2E-06 51.6 4.6 37 209-245 97-133 (295)
291 1nlf_A Regulatory protein REPA 93.3 0.058 2E-06 51.4 4.2 26 210-235 30-55 (279)
292 1q3t_A Cytidylate kinase; nucl 93.3 0.046 1.6E-06 50.7 3.4 27 209-235 15-41 (236)
293 1ypw_A Transitional endoplasmi 93.3 0.051 1.7E-06 60.1 4.2 151 186-357 476-661 (806)
294 3lnc_A Guanylate kinase, GMP k 93.2 0.028 9.4E-07 52.0 1.7 25 210-234 27-52 (231)
295 1c9k_A COBU, adenosylcobinamid 93.2 0.061 2.1E-06 47.6 3.9 29 213-245 2-30 (180)
296 2i3b_A HCR-ntpase, human cance 93.2 0.04 1.4E-06 49.4 2.6 24 212-235 3-26 (189)
297 2og2_A Putative signal recogni 93.2 0.066 2.2E-06 53.0 4.4 28 209-236 156-183 (359)
298 3iqw_A Tail-anchored protein t 93.2 0.098 3.4E-06 51.3 5.6 37 209-245 15-51 (334)
299 4dzz_A Plasmid partitioning pr 93.1 0.093 3.2E-06 47.1 5.1 35 211-245 2-37 (206)
300 2j37_W Signal recognition part 92.9 0.11 3.6E-06 54.0 5.7 29 209-237 100-128 (504)
301 2p67_A LAO/AO transport system 92.9 0.11 3.6E-06 51.3 5.5 28 208-235 54-81 (341)
302 3lda_A DNA repair protein RAD5 92.9 0.12 4E-06 52.1 5.9 48 198-245 166-219 (400)
303 2ck3_D ATP synthase subunit be 92.9 0.32 1.1E-05 49.5 9.0 54 210-266 153-207 (482)
304 3fdi_A Uncharacterized protein 92.9 0.054 1.9E-06 49.0 3.1 26 211-236 7-32 (201)
305 2ocp_A DGK, deoxyguanosine kin 92.8 0.059 2E-06 50.1 3.4 26 210-235 2-27 (241)
306 2axn_A 6-phosphofructo-2-kinas 92.7 0.084 2.9E-06 55.2 4.7 30 209-238 34-63 (520)
307 3ld9_A DTMP kinase, thymidylat 92.7 0.16 5.4E-06 46.6 6.0 28 209-236 20-47 (223)
308 3l0o_A Transcription terminati 92.7 0.17 5.7E-06 50.2 6.3 38 199-237 165-202 (427)
309 3eph_A TRNA isopentenyltransfe 92.6 0.066 2.3E-06 53.6 3.5 25 211-235 3-27 (409)
310 2onk_A Molybdate/tungstate ABC 92.6 0.06 2.1E-06 50.2 3.0 25 208-233 23-47 (240)
311 3cr8_A Sulfate adenylyltranfer 92.5 0.09 3.1E-06 55.2 4.5 27 210-236 369-395 (552)
312 3tif_A Uncharacterized ABC tra 92.4 0.062 2.1E-06 49.9 2.8 25 209-233 30-54 (235)
313 2h92_A Cytidylate kinase; ross 92.4 0.057 2E-06 49.2 2.6 25 211-235 4-28 (219)
314 3v9p_A DTMP kinase, thymidylat 92.4 0.13 4.6E-06 47.3 5.1 28 210-237 25-52 (227)
315 3lv8_A DTMP kinase, thymidylat 92.3 0.17 5.8E-06 46.9 5.7 35 210-244 27-62 (236)
316 2pcj_A ABC transporter, lipopr 92.3 0.056 1.9E-06 49.8 2.4 24 210-233 30-53 (224)
317 2qm8_A GTPase/ATPase; G protei 92.3 0.15 5.2E-06 50.0 5.7 28 208-235 53-80 (337)
318 2dyk_A GTP-binding protein; GT 92.3 0.08 2.7E-06 45.1 3.3 23 211-233 2-24 (161)
319 3f9v_A Minichromosome maintena 92.3 0.054 1.9E-06 57.6 2.6 49 186-234 294-351 (595)
320 3fkq_A NTRC-like two-domain pr 92.2 0.15 5.3E-06 50.7 5.7 38 208-245 141-179 (373)
321 4tmk_A Protein (thymidylate ki 92.2 0.18 6.2E-06 45.9 5.7 27 211-237 4-30 (213)
322 1oix_A RAS-related protein RAB 92.2 0.071 2.4E-06 47.5 2.9 24 210-233 29-52 (191)
323 3tmk_A Thymidylate kinase; pho 92.2 0.32 1.1E-05 44.3 7.4 27 210-236 5-31 (216)
324 4akg_A Glutathione S-transfera 92.2 0.49 1.7E-05 58.5 10.9 137 211-357 1268-1431(2695)
325 3b85_A Phosphate starvation-in 92.1 0.054 1.8E-06 49.3 2.0 23 211-233 23-45 (208)
326 2gks_A Bifunctional SAT/APS ki 92.1 0.14 4.8E-06 53.8 5.5 45 192-236 354-398 (546)
327 2qi9_C Vitamin B12 import ATP- 92.1 0.072 2.5E-06 49.9 3.0 26 210-235 26-51 (249)
328 2cbz_A Multidrug resistance-as 92.1 0.069 2.4E-06 49.6 2.8 25 210-234 31-55 (237)
329 1m8p_A Sulfate adenylyltransfe 92.1 0.13 4.6E-06 54.2 5.3 28 209-236 395-422 (573)
330 2ffh_A Protein (FFH); SRP54, s 92.0 0.13 4.3E-06 52.2 4.7 29 209-237 97-125 (425)
331 1fx0_B ATP synthase beta chain 92.0 0.35 1.2E-05 49.5 8.0 53 210-265 165-218 (498)
332 2zej_A Dardarin, leucine-rich 92.0 0.059 2E-06 47.6 2.1 21 212-232 4-24 (184)
333 2ged_A SR-beta, signal recogni 92.0 0.11 3.6E-06 46.1 3.8 25 209-233 47-71 (193)
334 2wji_A Ferrous iron transport 92.0 0.079 2.7E-06 45.8 2.9 22 211-232 4-25 (165)
335 3gmt_A Adenylate kinase; ssgci 92.0 0.077 2.6E-06 48.9 2.9 24 211-234 9-32 (230)
336 2f9l_A RAB11B, member RAS onco 91.9 0.075 2.6E-06 47.5 2.8 24 210-233 5-28 (199)
337 1w36_D RECD, exodeoxyribonucle 91.9 0.49 1.7E-05 50.4 9.5 26 210-235 164-189 (608)
338 1b0u_A Histidine permease; ABC 91.9 0.076 2.6E-06 50.2 2.8 25 209-233 31-55 (262)
339 3gfo_A Cobalt import ATP-bindi 91.8 0.071 2.4E-06 50.8 2.5 24 210-233 34-57 (275)
340 3ez2_A Plasmid partition prote 91.8 0.27 9.2E-06 49.4 7.0 27 209-235 107-134 (398)
341 2v9p_A Replication protein E1; 91.8 0.089 3E-06 50.8 3.2 26 209-234 125-150 (305)
342 2d2e_A SUFC protein; ABC-ATPas 91.7 0.082 2.8E-06 49.6 2.9 24 210-233 29-52 (250)
343 1ji0_A ABC transporter; ATP bi 91.7 0.074 2.5E-06 49.5 2.6 24 210-233 32-55 (240)
344 1mv5_A LMRA, multidrug resista 91.7 0.089 3E-06 49.1 3.1 25 209-233 27-51 (243)
345 3cnl_A YLQF, putative uncharac 91.7 0.29 9.8E-06 46.1 6.7 23 211-233 100-122 (262)
346 1p5z_B DCK, deoxycytidine kina 91.7 0.057 1.9E-06 51.0 1.8 27 209-235 23-49 (263)
347 3tqf_A HPR(Ser) kinase; transf 91.7 0.1 3.5E-06 45.6 3.1 24 210-233 16-39 (181)
348 4hlc_A DTMP kinase, thymidylat 91.7 0.14 4.8E-06 46.4 4.3 30 211-240 3-32 (205)
349 1sgw_A Putative ABC transporte 91.7 0.067 2.3E-06 48.9 2.1 25 210-234 35-59 (214)
350 1g6h_A High-affinity branched- 91.6 0.076 2.6E-06 50.0 2.6 24 210-233 33-56 (257)
351 2woo_A ATPase GET3; tail-ancho 91.6 0.19 6.6E-06 49.1 5.6 37 209-245 18-54 (329)
352 4g1u_C Hemin import ATP-bindin 91.6 0.076 2.6E-06 50.3 2.5 24 210-233 37-60 (266)
353 2olj_A Amino acid ABC transpor 91.6 0.085 2.9E-06 49.9 2.8 25 209-233 49-73 (263)
354 1bif_A 6-phosphofructo-2-kinas 91.6 0.14 4.6E-06 52.9 4.6 29 210-238 39-67 (469)
355 2pze_A Cystic fibrosis transme 91.5 0.081 2.8E-06 48.9 2.5 25 210-234 34-58 (229)
356 2ce2_X GTPase HRAS; signaling 91.5 0.088 3E-06 44.9 2.7 22 212-233 5-26 (166)
357 2zu0_C Probable ATP-dependent 91.5 0.097 3.3E-06 49.6 3.1 24 210-233 46-69 (267)
358 2ff7_A Alpha-hemolysin translo 91.5 0.082 2.8E-06 49.5 2.6 24 210-233 35-58 (247)
359 2vp4_A Deoxynucleoside kinase; 91.5 0.082 2.8E-06 48.8 2.6 25 209-233 19-43 (230)
360 3igf_A ALL4481 protein; two-do 91.4 0.16 5.3E-06 50.6 4.7 35 211-245 3-37 (374)
361 3ea0_A ATPase, para family; al 91.4 0.18 6.2E-06 46.6 4.9 36 210-245 4-41 (245)
362 2ghi_A Transport protein; mult 91.4 0.092 3.1E-06 49.5 2.8 25 210-234 46-70 (260)
363 1vpl_A ABC transporter, ATP-bi 91.4 0.093 3.2E-06 49.4 2.8 24 210-233 41-64 (256)
364 3hdt_A Putative kinase; struct 91.4 0.1 3.6E-06 47.9 3.1 26 210-235 14-39 (223)
365 2wjg_A FEOB, ferrous iron tran 91.4 0.11 3.7E-06 45.7 3.2 24 210-233 7-30 (188)
366 2oze_A ORF delta'; para, walke 91.3 0.14 4.8E-06 49.1 4.1 48 195-245 22-72 (298)
367 1z2a_A RAS-related protein RAB 91.3 0.12 4.2E-06 44.2 3.3 24 210-233 5-28 (168)
368 2ixe_A Antigen peptide transpo 91.2 0.097 3.3E-06 49.7 2.8 25 209-233 44-68 (271)
369 1tq4_A IIGP1, interferon-induc 91.2 0.084 2.9E-06 53.3 2.5 36 198-233 57-92 (413)
370 1ihu_A Arsenical pump-driving 91.2 0.18 6E-06 53.7 5.1 37 209-245 7-43 (589)
371 3ch4_B Pmkase, phosphomevalona 91.2 0.15 5.1E-06 45.9 3.8 26 209-234 10-35 (202)
372 2www_A Methylmalonic aciduria 91.2 0.17 5.9E-06 49.9 4.7 27 209-235 73-99 (349)
373 2woj_A ATPase GET3; tail-ancho 91.2 0.25 8.5E-06 48.8 5.8 36 210-245 18-55 (354)
374 3con_A GTPase NRAS; structural 91.1 0.1 3.5E-06 46.0 2.8 23 211-233 22-44 (190)
375 2yz2_A Putative ABC transporte 91.1 0.1 3.5E-06 49.4 2.8 24 210-233 33-56 (266)
376 2nq2_C Hypothetical ABC transp 91.1 0.096 3.3E-06 49.2 2.6 25 210-234 31-55 (253)
377 1nij_A Hypothetical protein YJ 91.0 0.12 4E-06 50.4 3.3 26 209-234 3-28 (318)
378 2ihy_A ABC transporter, ATP-bi 91.0 0.096 3.3E-06 50.0 2.5 25 210-234 47-71 (279)
379 2fz4_A DNA repair protein RAD2 91.0 1.8 6.1E-05 39.8 11.3 38 192-234 95-132 (237)
380 2lkc_A Translation initiation 91.0 0.13 4.4E-06 44.7 3.2 24 209-232 7-30 (178)
381 1fzq_A ADP-ribosylation factor 91.0 0.15 5.1E-06 44.8 3.7 25 209-233 15-39 (181)
382 2nzj_A GTP-binding protein REM 90.9 0.13 4.3E-06 44.5 3.1 24 210-233 4-27 (175)
383 1u8z_A RAS-related protein RAL 90.9 0.11 3.9E-06 44.3 2.8 23 211-233 5-27 (168)
384 3bfv_A CAPA1, CAPB2, membrane 90.9 0.26 8.9E-06 46.7 5.5 38 208-245 80-118 (271)
385 3cio_A ETK, tyrosine-protein k 90.9 0.24 8.3E-06 47.7 5.3 38 208-245 102-140 (299)
386 1u0l_A Probable GTPase ENGC; p 90.9 1.2 4.2E-05 42.6 10.4 24 211-234 170-193 (301)
387 1x6v_B Bifunctional 3'-phospho 90.8 0.14 4.9E-06 54.3 3.9 27 209-235 51-77 (630)
388 1kao_A RAP2A; GTP-binding prot 90.8 0.12 4E-06 44.2 2.8 22 212-233 5-26 (167)
389 1nrj_B SR-beta, signal recogni 90.8 0.14 4.7E-06 46.4 3.3 26 209-234 11-36 (218)
390 2fn4_A P23, RAS-related protei 90.8 0.16 5.4E-06 44.1 3.6 25 209-233 8-32 (181)
391 2gj8_A MNME, tRNA modification 90.8 0.11 3.7E-06 45.3 2.5 23 211-233 5-27 (172)
392 1c1y_A RAS-related protein RAP 90.8 0.12 4.1E-06 44.2 2.8 22 212-233 5-26 (167)
393 1wcv_1 SOJ, segregation protei 90.7 0.18 6E-06 47.3 4.1 37 209-245 5-42 (257)
394 1svi_A GTP-binding protein YSX 90.7 0.14 4.8E-06 45.3 3.3 25 209-233 22-46 (195)
395 2erx_A GTP-binding protein DI- 90.7 0.11 3.9E-06 44.6 2.6 22 211-232 4-25 (172)
396 1z08_A RAS-related protein RAB 90.7 0.12 4.1E-06 44.4 2.7 24 210-233 6-29 (170)
397 3t1o_A Gliding protein MGLA; G 90.7 0.13 4.5E-06 45.4 3.0 28 210-237 14-41 (198)
398 1m7b_A RND3/RHOE small GTP-bin 90.7 0.12 4E-06 45.5 2.7 24 210-233 7-30 (184)
399 3q85_A GTP-binding protein REM 90.6 0.12 4.1E-06 44.4 2.6 21 212-232 4-24 (169)
400 1ek0_A Protein (GTP-binding pr 90.6 0.13 4.3E-06 44.2 2.8 22 212-233 5-26 (170)
401 2iwr_A Centaurin gamma 1; ANK 90.6 0.12 4.1E-06 45.0 2.6 23 211-233 8-30 (178)
402 3vr4_D V-type sodium ATPase su 90.6 0.17 5.8E-06 51.3 4.0 26 211-236 152-177 (465)
403 1z0j_A RAB-22, RAS-related pro 90.5 0.13 4.4E-06 44.2 2.8 23 211-233 7-29 (170)
404 1r8s_A ADP-ribosylation factor 90.5 0.13 4.5E-06 43.9 2.8 21 213-233 3-23 (164)
405 3ihw_A Centg3; RAS, centaurin, 90.5 0.13 4.4E-06 45.4 2.7 24 210-233 20-43 (184)
406 4gzl_A RAS-related C3 botulinu 90.4 0.15 5E-06 45.8 3.2 23 210-232 30-52 (204)
407 3def_A T7I23.11 protein; chlor 90.4 0.2 7E-06 47.1 4.3 35 199-233 25-59 (262)
408 3sop_A Neuronal-specific septi 90.4 0.13 4.5E-06 48.7 2.9 23 212-234 4-26 (270)
409 3nh6_A ATP-binding cassette SU 90.4 0.12 4.2E-06 49.9 2.7 25 209-233 79-103 (306)
410 3kta_A Chromosome segregation 90.4 0.13 4.6E-06 45.1 2.8 24 211-234 27-50 (182)
411 3q72_A GTP-binding protein RAD 90.4 0.12 4.1E-06 44.3 2.4 21 212-232 4-24 (166)
412 3cwq_A Para family chromosome 90.3 0.31 1.1E-05 44.1 5.3 33 212-245 2-35 (209)
413 1ky3_A GTP-binding protein YPT 90.3 0.16 5.6E-06 44.0 3.3 25 209-233 7-31 (182)
414 1g16_A RAS-related protein SEC 90.3 0.14 4.6E-06 44.0 2.7 23 211-233 4-26 (170)
415 2hxs_A RAB-26, RAS-related pro 90.3 0.14 4.9E-06 44.4 2.9 24 210-233 6-29 (178)
416 1wms_A RAB-9, RAB9, RAS-relate 90.3 0.14 4.8E-06 44.4 2.8 24 210-233 7-30 (177)
417 1r2q_A RAS-related protein RAB 90.2 0.14 4.8E-06 43.9 2.8 22 211-232 7-28 (170)
418 3pqc_A Probable GTP-binding pr 90.2 0.17 5.7E-06 44.6 3.3 24 210-233 23-46 (195)
419 3pg5_A Uncharacterized protein 90.2 0.27 9.1E-06 48.8 5.1 35 211-245 2-37 (361)
420 3c5c_A RAS-like protein 12; GD 90.2 0.14 4.8E-06 45.2 2.8 24 210-233 21-44 (187)
421 1h65_A Chloroplast outer envel 90.2 0.22 7.5E-06 47.1 4.3 31 203-233 32-62 (270)
422 4b3f_X DNA-binding protein smu 90.2 0.35 1.2E-05 52.0 6.3 38 193-234 192-229 (646)
423 3k9g_A PF-32 protein; ssgcid, 90.1 0.26 9E-06 46.3 4.8 36 209-245 26-62 (267)
424 1z0f_A RAB14, member RAS oncog 90.1 0.15 5.1E-06 44.2 2.8 24 210-233 15-38 (179)
425 1m2o_B GTP-binding protein SAR 90.0 0.15 5E-06 45.3 2.7 23 211-233 24-46 (190)
426 2xj4_A MIPZ; replication, cell 89.9 0.33 1.1E-05 46.2 5.4 35 211-245 5-40 (286)
427 1jwy_B Dynamin A GTPase domain 89.9 0.21 7.3E-06 48.2 4.1 25 209-233 23-47 (315)
428 1byi_A Dethiobiotin synthase; 89.9 0.23 7.8E-06 45.2 4.1 34 211-244 2-36 (224)
429 1lw7_A Transcriptional regulat 89.9 0.17 5.7E-06 50.3 3.3 26 210-235 170-195 (365)
430 3tw8_B RAS-related protein RAB 89.9 0.16 5.3E-06 44.1 2.8 24 209-232 8-31 (181)
431 2cjw_A GTP-binding protein GEM 89.9 0.15 5.3E-06 45.3 2.8 22 211-232 7-28 (192)
432 2cxx_A Probable GTP-binding pr 89.9 0.13 4.6E-06 45.1 2.4 22 212-233 3-24 (190)
433 3kkq_A RAS-related protein M-R 89.8 0.16 5.4E-06 44.4 2.8 24 210-233 18-41 (183)
434 3bc1_A RAS-related protein RAB 89.8 0.16 5.4E-06 44.7 2.8 24 210-233 11-34 (195)
435 2bbs_A Cystic fibrosis transme 89.8 0.15 5.1E-06 48.9 2.7 26 209-234 63-88 (290)
436 4dsu_A GTPase KRAS, isoform 2B 89.8 0.16 5.5E-06 44.5 2.8 23 211-233 5-27 (189)
437 3fvq_A Fe(3+) IONS import ATP- 89.8 0.16 5.6E-06 50.1 3.1 24 210-233 30-53 (359)
438 1p9r_A General secretion pathw 89.7 0.29 9.8E-06 49.5 4.9 86 209-304 166-251 (418)
439 2oil_A CATX-8, RAS-related pro 89.7 0.16 5.6E-06 44.8 2.8 24 210-233 25-48 (193)
440 1mh1_A RAC1; GTP-binding, GTPa 89.7 0.16 5.6E-06 44.3 2.8 22 211-232 6-27 (186)
441 4i1u_A Dephospho-COA kinase; s 89.6 0.18 6.1E-06 45.8 3.0 23 210-232 9-31 (210)
442 2bme_A RAB4A, RAS-related prot 89.6 0.16 5.5E-06 44.4 2.7 24 210-233 10-33 (186)
443 2yv5_A YJEQ protein; hydrolase 89.6 0.22 7.4E-06 48.1 3.7 23 211-234 166-188 (302)
444 1upt_A ARL1, ADP-ribosylation 89.6 0.22 7.5E-06 42.7 3.5 24 210-233 7-30 (171)
445 2a9k_A RAS-related protein RAL 89.5 0.17 5.8E-06 44.2 2.8 24 210-233 18-41 (187)
446 2y8e_A RAB-protein 6, GH09086P 89.5 0.17 5.7E-06 43.9 2.7 22 211-232 15-36 (179)
447 3bwd_D RAC-like GTP-binding pr 89.5 0.17 5.9E-06 44.0 2.8 23 211-233 9-31 (182)
448 1vg8_A RAS-related protein RAB 89.5 0.2 7E-06 44.7 3.3 24 210-233 8-31 (207)
449 2efe_B Small GTP-binding prote 89.5 0.17 5.9E-06 44.0 2.7 24 210-233 12-35 (181)
450 3t5g_A GTP-binding protein RHE 89.5 0.17 5.8E-06 44.1 2.7 23 210-232 6-28 (181)
451 2atv_A RERG, RAS-like estrogen 89.4 0.17 6E-06 44.9 2.8 24 210-233 28-51 (196)
452 3cbq_A GTP-binding protein REM 89.4 0.13 4.5E-06 45.8 2.0 23 210-232 23-45 (195)
453 3la6_A Tyrosine-protein kinase 89.4 0.42 1.4E-05 45.6 5.6 51 195-245 75-128 (286)
454 1z47_A CYSA, putative ABC-tran 89.4 0.17 5.8E-06 49.9 2.9 24 210-233 41-64 (355)
455 2g6b_A RAS-related protein RAB 89.3 0.18 6.2E-06 43.8 2.8 24 210-233 10-33 (180)
456 3d31_A Sulfate/molybdate ABC t 89.3 0.18 6.2E-06 49.6 3.0 24 210-233 26-49 (348)
457 3dz8_A RAS-related protein RAB 89.3 0.18 6.3E-06 44.5 2.8 24 210-233 23-46 (191)
458 3tui_C Methionine import ATP-b 89.3 0.19 6.6E-06 49.6 3.1 24 209-232 53-76 (366)
459 2qe7_A ATP synthase subunit al 89.3 0.51 1.7E-05 48.4 6.3 86 210-299 162-264 (502)
460 2bov_A RAla, RAS-related prote 89.2 0.18 6.2E-06 44.9 2.8 24 210-233 14-37 (206)
461 3rlf_A Maltose/maltodextrin im 89.2 0.18 6.1E-06 50.2 2.9 24 210-233 29-52 (381)
462 3llu_A RAS-related GTP-binding 89.2 0.16 5.5E-06 45.2 2.3 24 210-233 20-43 (196)
463 1f6b_A SAR1; gtpases, N-termin 89.2 0.15 5.3E-06 45.5 2.2 22 211-232 26-47 (198)
464 2yyz_A Sugar ABC transporter, 89.2 0.2 6.8E-06 49.6 3.2 24 210-233 29-52 (359)
465 1oxx_K GLCV, glucose, ABC tran 89.2 0.17 5.9E-06 49.9 2.7 24 210-233 31-54 (353)
466 2ew1_A RAS-related protein RAB 89.2 0.18 6.2E-06 45.3 2.7 24 210-233 26-49 (201)
467 3clv_A RAB5 protein, putative; 89.1 0.19 6.4E-06 44.5 2.8 24 210-233 7-30 (208)
468 2r9v_A ATP synthase subunit al 89.1 0.46 1.6E-05 48.7 5.9 86 210-299 175-277 (515)
469 3oes_A GTPase rhebl1; small GT 89.1 0.18 6.3E-06 44.9 2.7 24 210-233 24-47 (201)
470 2it1_A 362AA long hypothetical 89.1 0.2 7E-06 49.5 3.1 24 210-233 29-52 (362)
471 1pui_A ENGB, probable GTP-bind 89.0 0.11 3.9E-06 46.6 1.2 25 209-233 25-49 (210)
472 1zd9_A ADP-ribosylation factor 89.0 0.2 6.7E-06 44.2 2.8 23 211-233 23-45 (188)
473 3reg_A RHO-like small GTPase; 89.0 0.2 6.7E-06 44.4 2.8 24 210-233 23-46 (194)
474 2fg5_A RAB-22B, RAS-related pr 89.0 0.19 6.5E-06 44.5 2.7 24 210-233 23-46 (192)
475 2fh5_B SR-beta, signal recogni 88.9 0.2 6.7E-06 45.2 2.8 24 210-233 7-30 (214)
476 1g29_1 MALK, maltose transport 88.9 0.19 6.6E-06 49.9 2.9 24 210-233 29-52 (372)
477 1zbd_A Rabphilin-3A; G protein 88.9 0.19 6.5E-06 44.8 2.6 24 210-233 8-31 (203)
478 1gwn_A RHO-related GTP-binding 88.9 0.23 8E-06 44.6 3.2 24 210-233 28-51 (205)
479 2gf9_A RAS-related protein RAB 88.9 0.2 6.9E-06 44.1 2.8 24 210-233 22-45 (189)
480 2a5j_A RAS-related protein RAB 88.8 0.21 7E-06 44.2 2.8 24 210-233 21-44 (191)
481 3tkl_A RAS-related protein RAB 88.8 0.21 7E-06 44.2 2.8 24 210-233 16-39 (196)
482 1v43_A Sugar-binding transport 88.8 0.22 7.4E-06 49.5 3.1 23 210-232 37-59 (372)
483 2gf0_A GTP-binding protein DI- 88.8 0.2 6.8E-06 44.4 2.7 23 210-232 8-30 (199)
484 1tf7_A KAIC; homohexamer, hexa 88.7 0.32 1.1E-05 50.9 4.6 37 209-245 280-316 (525)
485 1z06_A RAS-related protein RAB 88.7 0.21 7.3E-06 43.9 2.8 23 210-232 20-42 (189)
486 2g3y_A GTP-binding protein GEM 88.7 0.2 6.9E-06 45.5 2.6 23 210-232 37-59 (211)
487 2gza_A Type IV secretion syste 88.6 0.23 7.8E-06 49.3 3.2 35 210-245 175-209 (361)
488 2p5s_A RAS and EF-hand domain 88.6 0.21 7.4E-06 44.4 2.8 24 210-233 28-51 (199)
489 4bas_A ADP-ribosylation factor 88.6 0.2 6.7E-06 44.4 2.5 25 209-233 16-40 (199)
490 1x3s_A RAS-related protein RAB 88.5 0.22 7.5E-06 43.9 2.8 23 211-233 16-38 (195)
491 3q9l_A Septum site-determining 88.5 0.35 1.2E-05 45.0 4.3 35 211-245 3-38 (260)
492 2orv_A Thymidine kinase; TP4A 88.5 0.54 1.9E-05 43.1 5.3 106 210-326 19-125 (234)
493 1dek_A Deoxynucleoside monopho 88.5 0.25 8.7E-06 45.8 3.2 23 211-233 2-24 (241)
494 2q3h_A RAS homolog gene family 88.4 0.2 6.8E-06 44.6 2.4 24 210-233 20-43 (201)
495 3lxx_A GTPase IMAP family memb 88.4 0.25 8.5E-06 45.6 3.2 25 209-233 28-52 (239)
496 2qu8_A Putative nucleolar GTP- 88.4 0.24 8.3E-06 45.3 3.0 25 209-233 28-52 (228)
497 1ksh_A ARF-like protein 2; sma 88.4 0.19 6.6E-06 44.0 2.3 25 209-233 17-41 (186)
498 2c61_A A-type ATP synthase non 88.4 0.28 9.4E-06 50.0 3.6 27 210-236 152-178 (469)
499 4dkx_A RAS-related protein RAB 88.4 0.23 7.7E-06 45.3 2.8 21 212-232 15-35 (216)
500 1zj6_A ADP-ribosylation factor 88.3 0.21 7.3E-06 43.9 2.5 23 210-232 16-38 (187)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1e-47 Score=341.37 Aligned_cols=171 Identities=43% Similarity=0.743 Sum_probs=144.7
Q ss_pred CCCCcccEEecCcccccCCchHHHHHHHHHhCCCceEecC-CcCCCCcchHHHHHhhhhcceEEEEeecCccCchhhHHH
Q 044627 8 CSPRKYDVFLSFRGEDTRNNFTSHLFAAFCREKIKAFIDE-QLKKGDDISSALLNAIEESKISVIIFSKGYASSTWCLEE 86 (524)
Q Consensus 8 ~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~wc~~E 86 (524)
+..++|||||||||+|++++|++||+++|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|||+||++|+||++|
T Consensus 4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 4589999999999999998999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCeeEeeEeEeccCcccccCCchHhHHhhhhhhcCCChHHHHHHHHHHHhcccccccCcccccchhhhH
Q 044627 87 LVKILECKKRKGQTVIPVFYNVDPSDVRNQTGSFGDAFVEHENDFRDMPQKVHKWRAALTQASNLCGWDSMTIRHEAELV 166 (524)
Q Consensus 87 l~~~~~~~~~~~~~v~Pi~~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i 166 (524)
|++|++|.+..++.|+||||+|+|++||+|+|+||++|.+|..+ ...+++++|+.||+++++++|+++. .+|+++|
T Consensus 84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i 159 (176)
T 3jrn_A 84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLV 159 (176)
T ss_dssp HHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHH
T ss_pred HHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC--CCHHHHH
Confidence 99999999888999999999999999999999999999999988 5568899999999999999999984 6799999
Q ss_pred HHHHhhccccccccccC
Q 044627 167 DEIVKDILKKIHDISHF 183 (524)
Q Consensus 167 ~~i~~~v~~~l~~~~~~ 183 (524)
++||++|+++|++ +||
T Consensus 160 ~~Iv~~v~~~l~~-~~~ 175 (176)
T 3jrn_A 160 DKIANEISNKKTI-YAT 175 (176)
T ss_dssp HHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHhcC-CCC
Confidence 9999999999987 543
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=5e-47 Score=341.87 Aligned_cols=171 Identities=42% Similarity=0.765 Sum_probs=159.4
Q ss_pred CCCCCcccEEecCcccccCCchHHHHHHHHHhCCCceEecC-CcCCCCcchHHHHHhhhhcceEEEEeecCccCchhhHH
Q 044627 7 FCSPRKYDVFLSFRGEDTRNNFTSHLFAAFCREKIKAFIDE-QLKKGDDISSALLNAIEESKISVIIFSKGYASSTWCLE 85 (524)
Q Consensus 7 ~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~wc~~ 85 (524)
+.+.++|||||||||+|++++|++||+.+|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|||+||++|+||++
T Consensus 30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~ 109 (204)
T 3ozi_A 30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM 109 (204)
T ss_dssp ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence 34679999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhh-cCCeeEeeEeEeccCcccccCCchHhHHhhhhhhcCCChHHHHHHHHHHHhcccccccCcccccchhh
Q 044627 86 ELVKILECKKR-KGQTVIPVFYNVDPSDVRNQTGSFGDAFVEHENDFRDMPQKVHKWRAALTQASNLCGWDSMTIRHEAE 164 (524)
Q Consensus 86 El~~~~~~~~~-~~~~v~Pi~~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~e~~ 164 (524)
||++|++|.+. .+++||||||+|+|++||+|+|+||++|.+|..++. .+++++|+.||+++|+++||++..+..|++
T Consensus 110 EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~ 187 (204)
T 3ozi_A 110 ELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQGA 187 (204)
T ss_dssp HHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTSCHHH
T ss_pred HHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCCCCHHH
Confidence 99999999864 578999999999999999999999999999998874 468999999999999999999998888999
Q ss_pred hHHHHHhhccccccc
Q 044627 165 LVDEIVKDILKKIHD 179 (524)
Q Consensus 165 ~i~~i~~~v~~~l~~ 179 (524)
+|++|+++|+++|+.
T Consensus 188 ~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 188 IADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998875
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.8e-43 Score=377.29 Aligned_cols=294 Identities=15% Similarity=0.091 Sum_probs=224.4
Q ss_pred cchhhhHHhhhhhhhcC-CCCceEEEeeccccchHHHHHHHHHh----hhcccccceeEeeeecccccc--cCHHHHHHH
Q 044627 190 VGVDSHIQRINSLLCIG-LPDFRMVRPWDMHGIAKTDIARAILN----QISSQFEGRSFMANVREESKR--VELEHLRDQ 262 (524)
Q Consensus 190 vGR~~el~~l~~~L~~~-~~~~~~v~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~wv~~~~~~~~~--~~~~~l~~~ 262 (524)
|||+.++++|.++|..+ ....++|+|+|||||||||||+++|+ ++..+|+.++|++ ++.. .+...++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHH
Confidence 49999999999999764 34589999999999999999999996 6888999999997 5554 378899999
Q ss_pred HHHHHhCCCC----cccCC-----chHHHHHHhccC-CeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCChhhhhh
Q 044627 263 ILSQILGENI----IKTSI-----PPRYINKRLQQM-KVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDK 332 (524)
Q Consensus 263 ll~~l~~~~~----~~~~~-----~~~~l~~~L~~~-~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~ 332 (524)
++.+++.... ...+. +...+++.|.++ |+||||||||+.+++ .+.. .+||+||||||+..++..
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHH
Confidence 9999986532 11222 367888999996 999999999998876 3332 169999999999999887
Q ss_pred cC-CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCCCHHHHHHHHhc-CCCC
Q 044627 333 YG-VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRKSKQHWENALHN-PKQI 410 (524)
Q Consensus 333 ~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l~~-l~~~ 410 (524)
++ ...+|+|++|+.++|++||.++++.... .+...+++.+|+++|+|+||||+++|+.++.++. +|...+.. +...
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~ 358 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESR 358 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcc
Confidence 65 3467999999999999999999876532 3577889999999999999999999999987753 33333322 1111
Q ss_pred CC-----------ccHHHHHHHhHhcCChHHHHHHhhcccccCCCCHHHHHHHHhhc-c-------------chhHhHHH
Q 044627 411 SD-----------PDIHDMLKISYDELNYKEKDLFLDIACFFNGEGRDYVKIILNNR-Y-------------LVHYGLNI 465 (524)
Q Consensus 411 ~~-----------~~i~~~l~~s~~~L~~~~k~~~~~la~f~~~~~~~~l~~l~~~~-~-------------~~~~~l~~ 465 (524)
+. ..+...++.+|..|++.+|.+|.+||+||.+++.+ +.+|.+. . ....++++
T Consensus 359 ~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~ 436 (549)
T 2a5y_B 359 GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKR 436 (549)
T ss_dssp CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHH
T ss_pred cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHH
Confidence 22 33444445555555555555555999999886555 4556553 1 12247999
Q ss_pred HhhCCceEEe-C---CeEEccHHHHHHHHHHHhhhC
Q 044627 466 LAGKALITIS-N---NKLQMRDLLQEMGQRVVCHES 497 (524)
Q Consensus 466 L~~~sLi~~~-~---~~~~mH~lv~~~~~~i~~~e~ 497 (524)
|+++|||+.. . ++|+|||+||++|++++.+++
T Consensus 437 L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 437 LSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 9999999976 2 469999999999998887664
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.1e-39 Score=375.93 Aligned_cols=301 Identities=17% Similarity=0.202 Sum_probs=239.5
Q ss_pred ccCCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhh---hccccc-ceeEeeeeccccc--cc
Q 044627 181 SHFGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQ---ISSQFE-GRSFMANVREESK--RV 254 (524)
Q Consensus 181 ~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~---~~~~f~-~~~wv~~~~~~~~--~~ 254 (524)
.+|..+..||||+.++++|.++|....+++++|+|+||||+||||||++++++ ...+|. .++|+. .+. ..
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~ 193 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS----IGKQDKS 193 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE----CCSCCHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE----ECCcCch
Confidence 45667788999999999999999766667899999999999999999999986 355565 455776 333 23
Q ss_pred CHHHHHHHHHHHHhCCCCc--c----cCCchHHHHHHhccC--CeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCC
Q 044627 255 ELEHLRDQILSQILGENII--K----TSIPPRYINKRLQQM--KVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRD 326 (524)
Q Consensus 255 ~~~~l~~~ll~~l~~~~~~--~----~~~~~~~l~~~L~~~--~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~ 326 (524)
........++..+...... . .+.....++..+.++ |+||||||||+..+++.+ ++||+||||||+
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESS
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCC
Confidence 4445566677776654321 1 233445566666666 999999999998776553 579999999999
Q ss_pred hhhhhh-cCCCeEEEcCC-CCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCCCHHHHHHHH
Q 044627 327 KKVLDK-YGVDYVYKVEG-FNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRKSKQHWENAL 404 (524)
Q Consensus 327 ~~~~~~-~~~~~~~~l~~-L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l 404 (524)
+.++.. .+....+++++ |+.+||++||...++.. .+...+.+.+|+++|+|+||||+++|++|+.++ ..|..++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l 342 (1249)
T 3sfz_A 267 KSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYL 342 (1249)
T ss_dssp TTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHH
T ss_pred HHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHH
Confidence 988744 44567899996 99999999999887433 233456789999999999999999999998765 4576666
Q ss_pred hcCCCCC-----------CccHHHHHHHhHhcCChHHHHHHhhcccccCC--CCHHHHHHHHhhc-cchhHhHHHHhhCC
Q 044627 405 HNPKQIS-----------DPDIHDMLKISYDELNYKEKDLFLDIACFFNG--EGRDYVKIILNNR-YLVHYGLNILAGKA 470 (524)
Q Consensus 405 ~~l~~~~-----------~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~~--~~~~~l~~l~~~~-~~~~~~l~~L~~~s 470 (524)
+.+.... ...+..+|.+||+.|++++|.||++||+||.+ ++.+.+..+|..+ ..+...|++|+++|
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~s 422 (1249)
T 3sfz_A 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKS 422 (1249)
T ss_dssp HHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhcc
Confidence 6553322 14589999999999999999999999999987 6899999999988 88899999999999
Q ss_pred ceEEe-CCe---EEccHHHHHHHHHHHhhh
Q 044627 471 LITIS-NNK---LQMRDLLQEMGQRVVCHE 496 (524)
Q Consensus 471 Li~~~-~~~---~~mH~lv~~~~~~i~~~e 496 (524)
||+.. ++. |+||+|+|+++++...++
T Consensus 423 l~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 423 LLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99987 554 999999999999886654
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=337.21 Aligned_cols=326 Identities=17% Similarity=0.197 Sum_probs=242.2
Q ss_pred ccCCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh---ccccc-ceeEeeeecccccccCH
Q 044627 181 SHFGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI---SSQFE-GRSFMANVREESKRVEL 256 (524)
Q Consensus 181 ~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~---~~~f~-~~~wv~~~~~~~~~~~~ 256 (524)
..|..+..||||+.++++|.++|....++.++|+|+||||+||||||.+++++. ..+|+ .++|++... . ....+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~-~-~~~~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-Q-DKSGL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES-C-CHHHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC-C-chHHH
Confidence 456677889999999999999998655568999999999999999999999864 67795 688887221 1 11122
Q ss_pred HHHHHHHHHHHhCCCC--c----ccCCchHHHHHHhcc--CCeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCChh
Q 044627 257 EHLRDQILSQILGENI--I----KTSIPPRYINKRLQQ--MKVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKK 328 (524)
Q Consensus 257 ~~l~~~ll~~l~~~~~--~----~~~~~~~~l~~~L~~--~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~ 328 (524)
......+...+..... . ..+.....+...+.+ +++||||||+|+...++.+ +++++||||||++.
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcH
Confidence 2223333444442111 1 123344556666666 7899999999997766543 47899999999998
Q ss_pred hhhhcCCCeEEEc---CCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCCCHHHHHHHHh
Q 044627 329 VLDKYGVDYVYKV---EGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRKSKQHWENALH 405 (524)
Q Consensus 329 ~~~~~~~~~~~~l---~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l~ 405 (524)
++..++ ...+++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||+++|++++... ..|...+.
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~ 343 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLK 343 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHH
Confidence 776543 334555 5899999999999987542 122245688999999999999999999997654 35776666
Q ss_pred cCCCCC-----------CccHHHHHHHhHhcCChHHHHHHhhcccccCC--CCHHHHHHHHhhc-cchhHhHHHHhhCCc
Q 044627 406 NPKQIS-----------DPDIHDMLKISYDELNYKEKDLFLDIACFFNG--EGRDYVKIILNNR-YLVHYGLNILAGKAL 471 (524)
Q Consensus 406 ~l~~~~-----------~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~~--~~~~~l~~l~~~~-~~~~~~l~~L~~~sL 471 (524)
.+.... ...+..++..||+.|+++.|.||+++||||.+ ++.+.+..+|... ..+...++.|+++||
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~L 423 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSL 423 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcC
Confidence 543321 24789999999999999999999999999875 7888999999887 778889999999999
Q ss_pred eEEe-C---CeEEccHHHHHHHHHHHhh------------h-------CCCCCCCccccccCcchHHHHhhhC
Q 044627 472 ITIS-N---NKLQMRDLLQEMGQRVVCH------------E-------SYKDPGKYSSCLWYHEDVYHVRKKN 521 (524)
Q Consensus 472 i~~~-~---~~~~mH~lv~~~~~~i~~~------------e-------~~~~~~~r~r~lw~~~~~~~~l~~~ 521 (524)
|+.. + ..|+||+++|+++++.... . -+..++.+.+ +|....++|++.-+
T Consensus 424 l~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~H~~~a~ 495 (591)
T 1z6t_A 424 LFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCM-YWYNFLAYHMASAK 495 (591)
T ss_dssp SEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHH-HHHHHHHHHHHHTT
T ss_pred eEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEE-eehhhHHHHHHhcC
Confidence 9976 2 2699999999999877211 1 1223455666 77777888877643
No 6
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.2e-37 Score=340.15 Aligned_cols=298 Identities=13% Similarity=0.087 Sum_probs=226.3
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHh--hhcccccc-eeEeeeecccccccCHHHHHHHH
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILN--QISSQFEG-RSFMANVREESKRVELEHLRDQI 263 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~--~~~~~f~~-~~wv~~~~~~~~~~~~~~l~~~l 263 (524)
...|||+.++++|.++|... ++.++|+|+||||+||||||+++++ ++..+|+. ++|++ ++...+...+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHHH
Confidence 34599999999999999753 3478999999999999999999997 47888996 78888 55556666666666
Q ss_pred HHHHhCCCC------c----c---cCCchHHHHHHh---ccCCeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCCh
Q 044627 264 LSQILGENI------I----K---TSIPPRYINKRL---QQMKVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDK 327 (524)
Q Consensus 264 l~~l~~~~~------~----~---~~~~~~~l~~~L---~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~ 327 (524)
+..+..... + . .+.....+++.| .++|+||||||||+.++|+.+. +||+||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 654332110 0 0 122344566655 5799999999999998888763 689999999999
Q ss_pred hhhhhcCCCeEEEcC------CCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCC--CHHH
Q 044627 328 KVLDKYGVDYVYKVE------GFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRK--SKQH 399 (524)
Q Consensus 328 ~~~~~~~~~~~~~l~------~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~--~~~~ 399 (524)
.++..+.....|.|+ +|+.+||++||++.. ... . .++..+ .|+|+||||+++|+.|+.+ +.++
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~--~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR--P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC--T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC--H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHH
Confidence 887543322346666 899999999999884 222 1 223333 3999999999999999876 7888
Q ss_pred HHHHHhcCCCCCCccHHHHHHHhHhcCChHH-HHHHhhcccccCC--CCHHHHHHHHhhc--cchhHhHHHHhhCCceEE
Q 044627 400 WENALHNPKQISDPDIHDMLKISYDELNYKE-KDLFLDIACFFNG--EGRDYVKIILNNR--YLVHYGLNILAGKALITI 474 (524)
Q Consensus 400 w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~-k~~~~~la~f~~~--~~~~~l~~l~~~~--~~~~~~l~~L~~~sLi~~ 474 (524)
|... ....+..+|+.||+.|++++ |.||++||+||.+ ++.+.+..+|... ..+...|++|+++|||+.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 9763 34679999999999999999 9999999999986 6788899999876 357788999999999998
Q ss_pred e--CCeEEccHHHHHHHHHHHhhhCCCCCCCccccccCcchHHHHh
Q 044627 475 S--NNKLQMRDLLQEMGQRVVCHESYKDPGKYSSCLWYHEDVYHVR 518 (524)
Q Consensus 475 ~--~~~~~mH~lv~~~~~~i~~~e~~~~~~~r~r~lw~~~~~~~~l 518 (524)
. .++|+||||+++++. ...+.+..++| ++.+-.+..++
T Consensus 420 d~~~~rYrMHDLllELr~-----~~~e~~alHrR-Lvd~Y~~~~vf 459 (1221)
T 1vt4_I 420 QPKESTISIPSIYLELKV-----KLENEYALHRS-IVDHYNIPKTF 459 (1221)
T ss_dssp CSSSSEEBCCCHHHHHHH-----HHSCCTTHHHH-HHHHHHHHHHC
T ss_pred eCCCCEEEehHHHHHHhc-----CCCcHHHHHHH-HHHHHHhhCcC
Confidence 6 567999999988441 11234555666 55555544433
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.96 E-value=1.4e-30 Score=230.70 Aligned_cols=120 Identities=18% Similarity=0.394 Sum_probs=111.7
Q ss_pred CCCcccEEecCcccccCCchHHHHHHHHHhCCCceEecC-CcCCCCcchHHHHHhhhhcceEEEEeecCccCchhhHHHH
Q 044627 9 SPRKYDVFLSFRGEDTRNNFTSHLFAAFCREKIKAFIDE-QLKKGDDISSALLNAIEESKISVIIFSKGYASSTWCLEEL 87 (524)
Q Consensus 9 ~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~wc~~El 87 (524)
+.++|||||||+++| +..|+.+|+.+|+++|++||+|+ ++.+|+.|.++|.++|++|+++|+|+|++|++|.||+.||
T Consensus 17 ~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El 95 (154)
T 3h16_A 17 SAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKEL 95 (154)
T ss_dssp -CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHH
T ss_pred CCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHH
Confidence 468999999999999 45799999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhcCCeeEeeEeEeccCcccccCCchHhHHhhhhh
Q 044627 88 VKILECKKRKGQTVIPVFYNVDPSDVRNQTGSFGDAFVEHEN 129 (524)
Q Consensus 88 ~~~~~~~~~~~~~v~Pi~~~v~p~~vr~~~g~~~~~~~~~~~ 129 (524)
..++.+....+++|+||||+++|++|++|+|.|++.|.....
T Consensus 96 ~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~ 137 (154)
T 3h16_A 96 DGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS 137 (154)
T ss_dssp HHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT
T ss_pred HHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC
Confidence 999998777778999999999999999999999998875543
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.91 E-value=4e-26 Score=198.95 Aligned_cols=136 Identities=20% Similarity=0.335 Sum_probs=93.8
Q ss_pred CCCCCCCcccEEecCcccccCCchHHHHHHHHHh--CCCceEecC-CcCCCCcchHHHHHhhhhcceEEEEeecCccCch
Q 044627 5 SSFCSPRKYDVFLSFRGEDTRNNFTSHLFAAFCR--EKIKAFIDE-QLKKGDDISSALLNAIEESKISVIIFSKGYASST 81 (524)
Q Consensus 5 ~~~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~--~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~ 81 (524)
+|....++|||||||+++|+ .|+.+|+.+|++ +|+++|+++ |+.+|+.+.++|.+||++|+++|+|+|+||++|.
T Consensus 3 ~~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~ 80 (146)
T 3ub2_A 3 GSSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDP 80 (146)
T ss_dssp -CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCH
T ss_pred CCCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCH
Confidence 45567789999999999995 589999999998 699999998 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhHhhcCCeeEeeEeEeccCcc----cccCCchHhHHhhhhhhcCCChHHHHHHHHHH
Q 044627 82 WCLEELVKILECKKRKGQTVIPVFYNVDPSDV----RNQTGSFGDAFVEHENDFRDMPQKVHKWRAAL 145 (524)
Q Consensus 82 wc~~El~~~~~~~~~~~~~v~Pi~~~v~p~~v----r~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al 145 (524)
||..|+..|+.+......+||||||++++.++ +....... ......+....+.|.+|+++|
T Consensus 81 wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 81 WCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDG---RGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeec---cChHhhHHHHHHHHHHHHHhc
Confidence 99999999999874344478899999875544 43332111 122333433445677777664
No 9
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.86 E-value=8.5e-23 Score=180.89 Aligned_cols=101 Identities=19% Similarity=0.330 Sum_probs=91.2
Q ss_pred CCCCcccEEecCcccccCCchHHHHHHHHHhC--CCceEecC-CcCCCCcchHHHHHhhh-hcceEEEEeecCccCchhh
Q 044627 8 CSPRKYDVFLSFRGEDTRNNFTSHLFAAFCRE--KIKAFIDE-QLKKGDDISSALLNAIE-ESKISVIIFSKGYASSTWC 83 (524)
Q Consensus 8 ~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~-~s~~~i~v~S~~y~~s~wc 83 (524)
...++|||||||+++| .+||.+|+.+|+++ |+++|+|+ |+.+|+++.++|.++|+ +|+++|+|+|++|++|.||
T Consensus 12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 4568999999999999 67999999999985 69999998 99999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHhH-hhcCCeeEeeEeEecc
Q 044627 84 LEELVKILECK-KRKGQTVIPVFYNVDP 110 (524)
Q Consensus 84 ~~El~~~~~~~-~~~~~~v~Pi~~~v~p 110 (524)
..|+..|+.+. ...+++||||||+.-+
T Consensus 90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 90 DFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 99999999876 4445689999998643
No 10
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.85 E-value=6.5e-23 Score=179.82 Aligned_cols=97 Identities=19% Similarity=0.326 Sum_probs=89.0
Q ss_pred CCCcccEEecCcccccCCchHHH-HHHHHHhC--CCceEecC-CcCCCCcchHHHHHhhhhcceEEEEeecCccCchhhH
Q 044627 9 SPRKYDVFLSFRGEDTRNNFTSH-LFAAFCRE--KIKAFIDE-QLKKGDDISSALLNAIEESKISVIIFSKGYASSTWCL 84 (524)
Q Consensus 9 ~~~~~dvFis~~~~D~~~~~~~~-l~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~wc~ 84 (524)
..++|||||||+++|+ .|+.+ |+..|+++ |+++|+|+ |+.+|+++.++|.++|++|+++|+|+||+|++|.||.
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3578999999999995 69997 99999987 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhH-hhcCCeeEeeEeE
Q 044627 85 EELVKILECK-KRKGQTVIPVFYN 107 (524)
Q Consensus 85 ~El~~~~~~~-~~~~~~v~Pi~~~ 107 (524)
.|+..|+.+. +..+++||||||+
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~ 103 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLE 103 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEEEec
Confidence 9999988643 5567789999997
No 11
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.85 E-value=1.7e-22 Score=181.75 Aligned_cols=100 Identities=18% Similarity=0.369 Sum_probs=86.6
Q ss_pred CCCCCcccEEecCcccccCCchHHH-HHHHHHh--CCCceEecC-CcCCCCcchHHHHHhhhhcceEEEEeecCccCchh
Q 044627 7 FCSPRKYDVFLSFRGEDTRNNFTSH-LFAAFCR--EKIKAFIDE-QLKKGDDISSALLNAIEESKISVIIFSKGYASSTW 82 (524)
Q Consensus 7 ~~~~~~~dvFis~~~~D~~~~~~~~-l~~~L~~--~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~w 82 (524)
....++|||||||+++|+ +||.+ |+..|++ +|+++|+|+ |+.+|+++.++|.++|++|+++|+|+||+|++|+|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 346789999999999994 69985 9999998 899999998 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhH-hhcCCeeEeeEeEe
Q 044627 83 CLEELVKILECK-KRKGQTVIPVFYNV 108 (524)
Q Consensus 83 c~~El~~~~~~~-~~~~~~v~Pi~~~v 108 (524)
|..|+..|+.+. +..+++||||||+.
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 999999998755 45567899999974
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.84 E-value=1e-21 Score=173.82 Aligned_cols=100 Identities=20% Similarity=0.312 Sum_probs=88.2
Q ss_pred CcccEEecCcccccC---------CchHHHHHH-HHH-hCCCceEecC-CcCCCCcchHHHHHhhhhcceEEEEeecCcc
Q 044627 11 RKYDVFLSFRGEDTR---------NNFTSHLFA-AFC-REKIKAFIDE-QLKKGDDISSALLNAIEESKISVIIFSKGYA 78 (524)
Q Consensus 11 ~~~dvFis~~~~D~~---------~~~~~~l~~-~L~-~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~ 78 (524)
+.|||||||+++|+. .+||.+|.. .|+ ++|+++|+|+ |+.+|+.+.++|.++|++|+.+|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 469999999999963 468888665 699 7999999998 9999999999999999999999999999997
Q ss_pred -CchhhHHHHHHHHHhH-hhcCCeeEeeEeEecc
Q 044627 79 -SSTWCLEELVKILECK-KRKGQTVIPVFYNVDP 110 (524)
Q Consensus 79 -~s~wc~~El~~~~~~~-~~~~~~v~Pi~~~v~p 110 (524)
+|.||..|+..|+.+. ...+.+||||+++-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999987 5667899999987443
No 13
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.81 E-value=1.8e-18 Score=174.01 Aligned_cols=288 Identities=15% Similarity=0.089 Sum_probs=178.8
Q ss_pred ccCCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccc---cccCHH
Q 044627 181 SHFGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREES---KRVELE 257 (524)
Q Consensus 181 ~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~---~~~~~~ 257 (524)
.++..+..|+||+.+++.|.+++..+ +++.|+|++|+|||||+++++++.. .+|+.. .... ...+..
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~ 75 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDC-RELYAERGHITRE 75 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEH-HHHHHTTTCBCHH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEe-ecccccccCCCHH
Confidence 45566788999999999999998753 6899999999999999999998752 556651 1110 011344
Q ss_pred HHHHHHHHHHhC----------------CCCc----ccCCchHHHHHHhcc-CCeEEEecCCCChhh---------HHHH
Q 044627 258 HLRDQILSQILG----------------ENII----KTSIPPRYINKRLQQ-MKVCIILDNVDKFGH---------SEYL 307 (524)
Q Consensus 258 ~l~~~ll~~l~~----------------~~~~----~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~---------~~~l 307 (524)
.+...+...+.. .... ...+....+.+.... ++++|||||++.... +..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 555555444321 0000 011122233333332 499999999965331 2222
Q ss_pred hCCCCCCCCCcEEEEecCChhhhhh-----------cC-CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHH
Q 044627 308 TGGLSRFGHGSRVIVTTRDKKVLDK-----------YG-VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVV 375 (524)
Q Consensus 308 ~~~~~~~~~gs~IIiTTR~~~~~~~-----------~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~ 375 (524)
...... .++.++|+|++....... .+ ....+++.+|+.+|+.+++.......... ...+.+..++
T Consensus 156 ~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~ 232 (350)
T 2qen_A 156 AYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAV 232 (350)
T ss_dssp HHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHH
T ss_pred HHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Confidence 221111 147789999887643221 11 13478999999999999998754222211 1245678999
Q ss_pred HHhcCChHHHHHHHHHhcC-CCHHHHHHHHhcCCCCCCccHHHHHHHhHhcC---ChHHHHHHhhcccccCCCCHHHHHH
Q 044627 376 DYANGSSLALNVLRSSFYR-KSKQHWENALHNPKQISDPDIHDMLKISYDEL---NYKEKDLFLDIACFFNGEGRDYVKI 451 (524)
Q Consensus 376 ~~~~g~PLal~~~~~~l~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L---~~~~k~~~~~la~f~~~~~~~~l~~ 451 (524)
+.++|+|+++..++..+.. .+...+...+ .+.+...+.-.+..+ ++..+.++..+|+ ...+...+..
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~ 303 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAMKRT-------LEVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRD 303 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHHHHH-------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999999998876432 2322221111 011222222233344 7888999999998 3456666666
Q ss_pred HH-----hhc-cchhHhHHHHhhCCceEEeCCeEEc-cHHHHHHHH
Q 044627 452 IL-----NNR-YLVHYGLNILAGKALITISNNKLQM-RDLLQEMGQ 490 (524)
Q Consensus 452 l~-----~~~-~~~~~~l~~L~~~sLi~~~~~~~~m-H~lv~~~~~ 490 (524)
.+ ... ......++.|.+.+||...++.|.+ |++++++.+
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 304 YLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 55 222 3456789999999999987777765 788887754
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.79 E-value=5.3e-18 Score=170.99 Aligned_cols=284 Identities=13% Similarity=0.096 Sum_probs=173.8
Q ss_pred ccCCCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccc--cccCHHH
Q 044627 181 SHFGNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREES--KRVELEH 258 (524)
Q Consensus 181 ~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~ 258 (524)
.++..+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|+++++++.... .+|+.. .... ...+...
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~ 76 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDL-RKFEERNYISYKD 76 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEG-GGGTTCSCCCHHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEc-hhhccccCCCHHH
Confidence 455567789999999999999 753 589999999999999999999876532 466652 1110 0112233
Q ss_pred HHHHHHHHHh-------------CCC-----C----cc-----cCCchHHHHHHhcc---CCeEEEecCCCChh-----h
Q 044627 259 LRDQILSQIL-------------GEN-----I----IK-----TSIPPRYINKRLQQ---MKVCIILDNVDKFG-----H 303 (524)
Q Consensus 259 l~~~ll~~l~-------------~~~-----~----~~-----~~~~~~~l~~~L~~---~~~LlVlDdv~~~~-----~ 303 (524)
+...+...+. ... + .. .......+.+.+.. ++++|||||++... +
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 3333333221 000 0 00 01233444444443 48999999995432 2
Q ss_pred -HHHHhCCCCCCCCCcEEEEecCChhhhhh-----------cCC-CeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHH
Q 044627 304 -SEYLTGGLSRFGHGSRVIVTTRDKKVLDK-----------YGV-DYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVL 370 (524)
Q Consensus 304 -~~~l~~~~~~~~~gs~IIiTTR~~~~~~~-----------~~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~ 370 (524)
+..+..... ..++.++|+|++....... .+. ...+.+.+|+.+|+.+++.............
T Consensus 157 ~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---- 231 (357)
T 2fna_A 157 LLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---- 231 (357)
T ss_dssp CHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----
T ss_pred HHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----
Confidence 222221111 1136789999997653221 111 3578999999999999998754321211212
Q ss_pred HHHHHHHhcCChHHHHHHHHHhcC-CCHHHHHHHHhcCCCCCCccHHHHHHHhHh-------cCChHHHHHHhhcccccC
Q 044627 371 SDNVVDYANGSSLALNVLRSSFYR-KSKQHWENALHNPKQISDPDIHDMLKISYD-------ELNYKEKDLFLDIACFFN 442 (524)
Q Consensus 371 ~~~i~~~~~g~PLal~~~~~~l~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~-------~L~~~~k~~~~~la~f~~ 442 (524)
...+++.|+|+|+++..++..+.. .+...|...+- +.+...+.-.+. .|++..+.++..+|+ .
T Consensus 232 ~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~--g 302 (357)
T 2fna_A 232 YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTL-------EYAKKLILKEFENFLHGREIARKRYLNIMRTLSK--C 302 (357)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHH-------HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT--C
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHH-------HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc--C
Confidence 178999999999999999876532 33333322110 111122222222 678899999999998 3
Q ss_pred CCCHHHHHHHH----h--hc-cchhHhHHHHhhCCceEEeCCeEE-ccHHHHHHH
Q 044627 443 GEGRDYVKIIL----N--NR-YLVHYGLNILAGKALITISNNKLQ-MRDLLQEMG 489 (524)
Q Consensus 443 ~~~~~~l~~l~----~--~~-~~~~~~l~~L~~~sLi~~~~~~~~-mH~lv~~~~ 489 (524)
. +...+...+ . .. ......++.|.+.+||...++.|+ -|++++++.
T Consensus 303 ~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 G-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 3 666665432 2 12 345678999999999988767777 578988864
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.73 E-value=5e-17 Score=167.45 Aligned_cols=282 Identities=12% Similarity=0.021 Sum_probs=170.6
Q ss_pred CCCCCccchhhhHHhhhhhh-hc--CC--CCceEEEe--eccccchHHHHHHHHHhhhccc-----cc-ceeEeeeeccc
Q 044627 184 GNSEDLVGVDSHIQRINSLL-CI--GL--PDFRMVRP--WDMHGIAKTDIARAILNQISSQ-----FE-GRSFMANVREE 250 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L-~~--~~--~~~~~v~I--~G~gGiGKTtLA~~~~~~~~~~-----f~-~~~wv~~~~~~ 250 (524)
..+..|+||+.++++|.++| .. .. ...+.+.| +|++|+||||||+++++..... +. .++|+. .
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~ 94 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----A 94 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----G
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----C
Confidence 34578999999999999998 43 11 23456666 9999999999999999976543 12 245555 3
Q ss_pred ccccCHHHHHHHHHHHHhCCCCcc---cCCchHHHHHHhc--cCCeEEEecCCCCh--------hhHHHHhCCCCCC---
Q 044627 251 SKRVELEHLRDQILSQILGENIIK---TSIPPRYINKRLQ--QMKVCIILDNVDKF--------GHSEYLTGGLSRF--- 314 (524)
Q Consensus 251 ~~~~~~~~l~~~ll~~l~~~~~~~---~~~~~~~l~~~L~--~~~~LlVlDdv~~~--------~~~~~l~~~~~~~--- 314 (524)
....+...+...++..++...+.. .......+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 344567788888888886543211 1223445555554 57899999999653 3333333222111
Q ss_pred C--CCcEEEEecCChhhhhhc---------CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhc----
Q 044627 315 G--HGSRVIVTTRDKKVLDKY---------GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYAN---- 379 (524)
Q Consensus 315 ~--~gs~IIiTTR~~~~~~~~---------~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---- 379 (524)
+ ....+|+||+...+.... .....+.+++|+.+++.++|...+........-..+.+..+++.++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 2 345578788765432111 1223499999999999999976542111111122466788999999
Q ss_pred --CChHHHHHHHHHh------cC---CCHHHHHHHHhcCCCCCCccHHHHHHHhHhcCChHHHHHHhhccccc----CCC
Q 044627 380 --GSSLALNVLRSSF------YR---KSKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFF----NGE 444 (524)
Q Consensus 380 --g~PLal~~~~~~l------~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~----~~~ 444 (524)
|+|..+..+.... .+ -+.+.+..++..... ...+..++..||+..+.++..+|++. ..+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 9997655443321 11 133444444433210 12233456789999999999898754 224
Q ss_pred CHHHHHH----HH-hhc-------cchhHhHHHHhhCCceEEe
Q 044627 445 GRDYVKI----IL-NNR-------YLVHYGLNILAGKALITIS 475 (524)
Q Consensus 445 ~~~~l~~----l~-~~~-------~~~~~~l~~L~~~sLi~~~ 475 (524)
+...+.. +. ... ......++.|.+.+||...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 4443332 11 111 1234679999999999875
No 16
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.65 E-value=1.1e-14 Score=148.57 Aligned_cols=272 Identities=13% Similarity=0.068 Sum_probs=173.7
Q ss_pred CCCccchhhhHHhhhhhhhc--CCCCceEEEeeccccchHHHHHHHHHhhhccc--------ccceeEeeeeccccccc-
Q 044627 186 SEDLVGVDSHIQRINSLLCI--GLPDFRMVRPWDMHGIAKTDIARAILNQISSQ--------FEGRSFMANVREESKRV- 254 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~wv~~~~~~~~~~- 254 (524)
++.|+||+.+++++..+|.. .....+.+.|+|++|+|||+||+.+++.+... ....+|+. .....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCC
Confidence 37899999999999988865 23346689999999999999999999976443 22344554 33334
Q ss_pred CHHHHHHHHHHHHhCCCCcc----cCCchHHHHHHhccCCeEEEecCCCChh------h-HHHHhCCCCCCCCCcEEEEe
Q 044627 255 ELEHLRDQILSQILGENIIK----TSIPPRYINKRLQQMKVCIILDNVDKFG------H-SEYLTGGLSRFGHGSRVIVT 323 (524)
Q Consensus 255 ~~~~l~~~ll~~l~~~~~~~----~~~~~~~l~~~L~~~~~LlVlDdv~~~~------~-~~~l~~~~~~~~~gs~IIiT 323 (524)
+...+...++..+.+..... .......+.+.+..++.+||||+++... . +..+.... .+..+|+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 66777788888774433211 2233455666677766699999996432 2 33444332 57788888
Q ss_pred cCChhhhh----h--cCCCeEEEcCCCCHHHHHHHHHHhhhc---CCCCCccHHHHHHHHHHHhc---CChH-HHHHHHH
Q 044627 324 TRDKKVLD----K--YGVDYVYKVEGFNYRESLEIFCYYAFR---QNHCPGDLLVLSDNVVDYAN---GSSL-ALNVLRS 390 (524)
Q Consensus 324 TR~~~~~~----~--~~~~~~~~l~~L~~~ea~~L~~~~~~~---~~~~~~~~~~~~~~i~~~~~---g~PL-al~~~~~ 390 (524)
|+...... . ......+.+++++.++..+++...+.. ....+ .+....+++.++ |.|. ++..+-.
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFR 247 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 88653211 1 112348999999999999999987532 22222 345677888888 9887 4444333
Q ss_pred Hh--c----CCCHHHHHHHHhcCCCCCCccHHHHHHHhHhcCChHHHHHHhhcccccC-CCCHHHHHHHHhh---c----
Q 044627 391 SF--Y----RKSKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFFN-GEGRDYVKIILNN---R---- 456 (524)
Q Consensus 391 ~l--~----~~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~-~~~~~~l~~l~~~---~---- 456 (524)
.. . .-+.+.+..++.... ...+..+++.|++.++.++..++.... +-..+....+... .
T Consensus 248 a~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~ 320 (384)
T 2qby_B 248 AAQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSY 320 (384)
T ss_dssp HHHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCH
T ss_pred HHHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCH
Confidence 22 1 235666666655431 245677789999999988887876212 1111122222221 1
Q ss_pred cchhHhHHHHhhCCceEEe
Q 044627 457 YLVHYGLNILAGKALITIS 475 (524)
Q Consensus 457 ~~~~~~l~~L~~~sLi~~~ 475 (524)
......++.|.++|||+..
T Consensus 321 ~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 321 RRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 2234678999999999875
No 17
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.62 E-value=3.3e-14 Score=144.83 Aligned_cols=277 Identities=14% Similarity=0.064 Sum_probs=170.5
Q ss_pred CCCCCccchhhhHHhhhhhhhcC--CCCceEEEeeccccchHHHHHHHHHhhhcccc------cceeEeeeecccccccC
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIG--LPDFRMVRPWDMHGIAKTDIARAILNQISSQF------EGRSFMANVREESKRVE 255 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~wv~~~~~~~~~~~ 255 (524)
..+..|+||+.+++.+..+|... ....+.+.|+|++|+||||||+.+++.....+ ...+|+. .....+
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 91 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRET 91 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCS
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCC
Confidence 34578999999999999998642 34467889999999999999999999764431 2344554 344456
Q ss_pred HHHHHHHHHHHHhCCCCcc---cCCchHHHHHHhc--cCCeEEEecCCCChh----h---HHHHhCCCCCC--CCCcEEE
Q 044627 256 LEHLRDQILSQILGENIIK---TSIPPRYINKRLQ--QMKVCIILDNVDKFG----H---SEYLTGGLSRF--GHGSRVI 321 (524)
Q Consensus 256 ~~~l~~~ll~~l~~~~~~~---~~~~~~~l~~~L~--~~~~LlVlDdv~~~~----~---~~~l~~~~~~~--~~gs~II 321 (524)
...+...++..++...+.. .......+.+.+. +++.+||||+++... . +..+....... ..+..+|
T Consensus 92 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 6777888888875533211 1222344555553 458899999997543 1 22223222111 3456777
Q ss_pred EecCChhh--------hhhcCCCeEEEcCCCCHHHHHHHHHHhhhc---CCCCCccHHHHHHHHHHHhc---CChH-HHH
Q 044627 322 VTTRDKKV--------LDKYGVDYVYKVEGFNYRESLEIFCYYAFR---QNHCPGDLLVLSDNVVDYAN---GSSL-ALN 386 (524)
Q Consensus 322 iTTR~~~~--------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~---~~~~~~~~~~~~~~i~~~~~---g~PL-al~ 386 (524)
+||+.... ...+ ....+.+++++.++..+++...+.. ....+ .+....+++.++ |.|. ++.
T Consensus 172 ~~t~~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ 247 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALD 247 (387)
T ss_dssp EECSCSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHH
T ss_pred EEECCCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHH
Confidence 77776522 1111 1247899999999999999877532 22222 234677888888 9994 333
Q ss_pred HHHHHhc-----C---CCHHHHHHHHhcCCCCCCccHHHHHHHhHhcCChHHHHHHhhcccccCC---CCHHHHHHHHhh
Q 044627 387 VLRSSFY-----R---KSKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFFNG---EGRDYVKIILNN 455 (524)
Q Consensus 387 ~~~~~l~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~~---~~~~~l~~l~~~ 455 (524)
++..... + -+.+.+..++... ....+..++..|++.++.++..++....+ +....+.+....
T Consensus 248 ~l~~a~~~a~~~~~~~i~~~~v~~a~~~~-------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 248 LLRVAGEIAERRREERVRREHVYSARAEI-------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHHHHHHTTCSCBCHHHHHHHHHHH-------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHHHH-------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 3322211 1 2455666655543 13356677899999999888877744333 333332222211
Q ss_pred -------c----cchhHhHHHHhhCCceEEe
Q 044627 456 -------R----YLVHYGLNILAGKALITIS 475 (524)
Q Consensus 456 -------~----~~~~~~l~~L~~~sLi~~~ 475 (524)
. ......++.|...|+++..
T Consensus 321 ~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 321 LTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 1 1344678999999999874
No 18
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.59 E-value=2.4e-14 Score=145.68 Aligned_cols=281 Identities=16% Similarity=0.080 Sum_probs=168.0
Q ss_pred CCCCCccchhhhHHhhhhhhhcC--CCCceEEEeeccccchHHHHHHHHHhhhccccc---ceeEeeeecccccccCHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIG--LPDFRMVRPWDMHGIAKTDIARAILNQISSQFE---GRSFMANVREESKRVELEH 258 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~ 258 (524)
..+..|+||+.+++.+.+++... ....+.+.|+|++|+||||||+.+++.....+. ..+|+. .........
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHHH
Confidence 44578999999999999998752 344678999999999999999999998765432 345554 233345556
Q ss_pred HHHHHHHHHhCCCCcc---cCCchHHHHHHhc--cCCeEEEecCCCCh------hhHHHHhCCCCC-CCCCcEEEEecCC
Q 044627 259 LRDQILSQILGENIIK---TSIPPRYINKRLQ--QMKVCIILDNVDKF------GHSEYLTGGLSR-FGHGSRVIVTTRD 326 (524)
Q Consensus 259 l~~~ll~~l~~~~~~~---~~~~~~~l~~~L~--~~~~LlVlDdv~~~------~~~~~l~~~~~~-~~~gs~IIiTTR~ 326 (524)
+...++..++...... .......+.+.+. +++.+||||+++.. +.+..+...... ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 6666666554322111 1122334444554 34899999999542 334444322211 1235667888876
Q ss_pred hhhhhhcC-------CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhc---CChHHH-HHHHHHhc--
Q 044627 327 KKVLDKYG-------VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYAN---GSSLAL-NVLRSSFY-- 393 (524)
Q Consensus 327 ~~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~PLal-~~~~~~l~-- 393 (524)
........ ....+.+++++.++..+++...+........-..+....+++.++ |.|..+ .++.....
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 54322211 125899999999999999987643211111122456677788887 999844 33322211
Q ss_pred ---C---CCHHHHHHHHhcCCCCCCccHHHHHHHhHhcCChHHHHHHhhcccccC-C---CCHHHH----HHHHh---hc
Q 044627 394 ---R---KSKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFFN-G---EGRDYV----KIILN---NR 456 (524)
Q Consensus 394 ---~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~-~---~~~~~l----~~l~~---~~ 456 (524)
+ -+.+.+..++... ....+..++..|++..+.++..++.+.. + +....+ ..+.. ..
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~-------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~ 325 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEI-------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVE 325 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHH-------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCccCHHHHHHHHHHH-------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCC
Confidence 1 2445555544432 1245667788999999988888875432 2 233322 22211 11
Q ss_pred ----cchhHhHHHHhhCCceEEe
Q 044627 457 ----YLVHYGLNILAGKALITIS 475 (524)
Q Consensus 457 ----~~~~~~l~~L~~~sLi~~~ 475 (524)
......++.|.+.|+|+..
T Consensus 326 ~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 326 AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 1234678999999999864
No 19
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.58 E-value=1.4e-13 Score=140.37 Aligned_cols=301 Identities=11% Similarity=0.033 Sum_probs=183.6
Q ss_pred CCCCccchhhhHHhhhhhhhcC----CCCceEEEeeccccchHHHHHHHHHhhhcccc-cceeEeeeecccccccCHHHH
Q 044627 185 NSEDLVGVDSHIQRINSLLCIG----LPDFRMVRPWDMHGIAKTDIARAILNQISSQF-EGRSFMANVREESKRVELEHL 259 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~~----~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~l 259 (524)
.++.++||+.+++++..++... ....+.+.|+|++|+|||||++.+++...... ...+++. .....+...+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHH
Confidence 3478999999999999988751 22234899999999999999999999876542 2345555 3444566777
Q ss_pred HHHHHHHHhCCCCcc---cCCchHHHHHHhc--cCCeEEEecCCCCh--hhHHHHhCCCCCCC----CCcEEEEecCChh
Q 044627 260 RDQILSQILGENIIK---TSIPPRYINKRLQ--QMKVCIILDNVDKF--GHSEYLTGGLSRFG----HGSRVIVTTRDKK 328 (524)
Q Consensus 260 ~~~ll~~l~~~~~~~---~~~~~~~l~~~L~--~~~~LlVlDdv~~~--~~~~~l~~~~~~~~----~gs~IIiTTR~~~ 328 (524)
...++..++...+.. .......+.+.+. +++.+||||+++.. ..+..+...+.... .+..+|++|+...
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 788877775432211 1222334444443 45889999999653 44555544433221 3667888887654
Q ss_pred hhhhcC-------CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHh---------cCChHHHHHHHHH-
Q 044627 329 VLDKYG-------VDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYA---------NGSSLALNVLRSS- 391 (524)
Q Consensus 329 ~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~PLal~~~~~~- 391 (524)
...... ....+.+++++.++..+++...+........-..+....+++.+ +|.|..+..+...
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 322211 12369999999999999998775431111112246678899999 7887554433322
Q ss_pred hc-----C---CCHHHHHHHHhcCCCCCCccHHHHHHHhHhcCChHHHHHHhhccccc---C--CCCHHHHHHHHhh---
Q 044627 392 FY-----R---KSKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFF---N--GEGRDYVKIILNN--- 455 (524)
Q Consensus 392 l~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~---~--~~~~~~l~~l~~~--- 455 (524)
.. + -+.+....+....... .+.-.+..|++..+.++..++.+. . .++...+...+..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~~~-------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVLFG-------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHSCC-------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHhhh-------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 11 1 2344444444333211 123446789999998888787654 2 2444444443322
Q ss_pred -------c-cchhHhHHHHhhCCceEEe-C-------CeE-------EccHHHHHHHHHHHhhh
Q 044627 456 -------R-YLVHYGLNILAGKALITIS-N-------NKL-------QMRDLLQEMGQRVVCHE 496 (524)
Q Consensus 456 -------~-~~~~~~l~~L~~~sLi~~~-~-------~~~-------~mH~lv~~~~~~i~~~e 496 (524)
. ......++.|..+++|... . |++ ..|+++..+...++.+|
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 324 EYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 1 1233679999999999975 2 222 25567777776666654
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.56 E-value=1.8e-15 Score=170.19 Aligned_cols=100 Identities=20% Similarity=0.344 Sum_probs=90.4
Q ss_pred CCCcccEEecCcccccCCchH-HHHHHHHHh-----CCCceEecC-CcCCCCcchHHHHHhhhhcceEEEEeecCccCch
Q 044627 9 SPRKYDVFLSFRGEDTRNNFT-SHLFAAFCR-----EKIKAFIDE-QLKKGDDISSALLNAIEESKISVIIFSKGYASST 81 (524)
Q Consensus 9 ~~~~~dvFis~~~~D~~~~~~-~~l~~~L~~-----~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~ 81 (524)
..++|||||||+++|. +|| .+|...||. .|+++|+++ |+.||+.+.++|.+||++|+++|+|+|++|+.|+
T Consensus 667 ~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~ 744 (844)
T 3j0a_A 667 DMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG 744 (844)
T ss_dssp SCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred cceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence 5679999999999995 587 779999985 689999999 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhH-hhcCCeeEeeEeEecc
Q 044627 82 WCLEELVKILECK-KRKGQTVIPVFYNVDP 110 (524)
Q Consensus 82 wc~~El~~~~~~~-~~~~~~v~Pi~~~v~p 110 (524)
||..|+..|+.+. +..+++||||||+.-|
T Consensus 745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp STTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 9999999988776 5667899999998544
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.41 E-value=7.2e-12 Score=118.40 Aligned_cols=196 Identities=13% Similarity=0.044 Sum_probs=117.8
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQI 263 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 263 (524)
.....++||+.+++.+..++..+. ..+.+.|+|++|+||||||+.+++.+...+.....-+ ...... ..+
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~ 89 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC--------GVCDNC-REI 89 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC--------SCSHHH-HHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--------cccHHH-HHH
Confidence 334569999999999999997643 2357889999999999999999987654332110000 000000 000
Q ss_pred HHHHhCCCCcc---cCCchHHHHHHh--------ccCCeEEEecCCCC--hhhHHHHhCCCCCCCCCcEEEEecCChhhh
Q 044627 264 LSQILGENIIK---TSIPPRYINKRL--------QQMKVCIILDNVDK--FGHSEYLTGGLSRFGHGSRVIVTTRDKKVL 330 (524)
Q Consensus 264 l~~l~~~~~~~---~~~~~~~l~~~L--------~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~ 330 (524)
........... .......+...+ .+++.+||+||++. ...++.+...+.....+..+|+||+.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 00000000000 000111111111 34578999999964 444555554444344677888888765322
Q ss_pred h--hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHHH
Q 044627 331 D--KYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSS 391 (524)
Q Consensus 331 ~--~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 391 (524)
. .......+++++++.++..+++...+...... -..+....|++.++|+|..+..+...
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 11224689999999999999998876543221 12456789999999999998776544
No 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.30 E-value=8.5e-11 Score=109.41 Aligned_cols=187 Identities=13% Similarity=0.053 Sum_probs=115.6
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQI 263 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 263 (524)
.....++||+..++.+..++.... .+.+.|+|++|+|||+||+.+++.+........++... .+...+...+...+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN--ASDERGIDVVRHKI 89 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE--TTCTTCHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec--cccccChHHHHHHH
Confidence 344679999999999999997643 33488999999999999999999764433222233210 12222222222222
Q ss_pred HHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCChhhh-h-hcCCCeEE
Q 044627 264 LSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKKVL-D-KYGVDYVY 339 (524)
Q Consensus 264 l~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~~~-~-~~~~~~~~ 339 (524)
. ....... ....++.+||+||++.. ...+.+...+.....++.+|+||+..... . .......+
T Consensus 90 ~-~~~~~~~------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 90 K-EFARTAP------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp H-HHHTSCC------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred H-HHhcccC------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 1 1111000 01246889999999654 33444444333334577888888765321 1 11223478
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 044627 340 KVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLR 389 (524)
Q Consensus 340 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 389 (524)
.+.+++.++..+++...+...... -..+....+++.++|+|..+..+.
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999998776432221 124567788999999999655443
No 23
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.12 E-value=3e-10 Score=112.41 Aligned_cols=187 Identities=15% Similarity=0.172 Sum_probs=114.3
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccc-c-ceeEeeeecccccccCHHHHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQF-E-GRSFMANVREESKRVELEHLRD 261 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~l~~ 261 (524)
.....++|++..++.+..++..+. .+.+.|+|++|+|||++|+.+++.+.... . ..+.+. .+...+...+ +
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~i-~ 90 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGIDVV-R 90 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSHHHH-H
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccChHHH-H
Confidence 344679999999999999997643 23388999999999999999999864322 2 123333 2222222222 2
Q ss_pred HHHHHHhCCCCcccCCchHHHHHHh-ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCChhh-hhh-cCCC
Q 044627 262 QILSQILGENIIKTSIPPRYINKRL-QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKKV-LDK-YGVD 336 (524)
Q Consensus 262 ~ll~~l~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~~-~~~-~~~~ 336 (524)
.++..+.... ..+ .+++.++|+||++.. ...+.+...+....+++.+|+||+.... ... ....
T Consensus 91 ~~~~~~~~~~------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 91 NQIKHFAQKK------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp THHHHHHHBC------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHHhcc------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 2222211000 001 345889999999753 3333343333333457788888876432 111 1234
Q ss_pred eEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH-HHHHHHHH
Q 044627 337 YVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVLRSS 391 (524)
Q Consensus 337 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~~~ 391 (524)
..+++.+++.++..+++...+...+.. -..+.+..+++.++|.|. ++..+...
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 589999999999999998776432211 124567889999999995 45555433
No 24
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.10 E-value=5.7e-09 Score=103.40 Aligned_cols=260 Identities=12% Similarity=0.075 Sum_probs=150.8
Q ss_pred CCCCCccchhhhHHhhhhhhhcC---CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIG---LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLR 260 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~---~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 260 (524)
.....|+|++..++.+..++... ......+.|+|++|+|||+||+.+++.....| .++. .........+.
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~----~~~~~~~~~l~ 81 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS----GPAIEKPGDLA 81 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC----TTTCCSHHHHH
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe----ccccCChHHHH
Confidence 34567999999999998888631 12346788999999999999999998775332 2332 11111111111
Q ss_pred HHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh--hHHHHhCCCCCC------------------CCCcEE
Q 044627 261 DQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG--HSEYLTGGLSRF------------------GHGSRV 320 (524)
Q Consensus 261 ~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~------------------~~gs~I 320 (524)
. .+.. . ..++.+|+||+++... ....+...+... .++..+
T Consensus 82 ~----~l~~---------------~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 82 A----ILAN---------------S-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp H----HHTT---------------T-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred H----HHHH---------------h-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 1 1110 0 1246789999997543 222222111100 023556
Q ss_pred EEecCChhhhh-h--cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCC--
Q 044627 321 IVTTRDKKVLD-K--YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSFYRK-- 395 (524)
Q Consensus 321 IiTTR~~~~~~-~--~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~-- 395 (524)
|.||....... . ......+.+.+++.++..+++...+...... -..+....++++++|+|..+..+...+...
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 66665432211 1 1123578999999999999988776433221 224667889999999998887666554211
Q ss_pred -------CHHHHHHHHhcCCCCCCccHHHHHHHhHhcCChHHHHHHhhccccc--CCCCHHHHHHHHhhc-cchhHhHHH
Q 044627 396 -------SKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFF--NGEGRDYVKIILNNR-YLVHYGLNI 465 (524)
Q Consensus 396 -------~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~--~~~~~~~l~~l~~~~-~~~~~~l~~ 465 (524)
+.+....++.. +......|++.++..+..+.... +.++...+...++-. ......++.
T Consensus 220 ~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~ 287 (324)
T 1hqc_A 220 VAGEEVITRERALEALAA------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEP 287 (324)
T ss_dssp TTSCSCCCHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHH
T ss_pred HhcCCCCCHHHHHHHHHH------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 22222222222 11223456777777776655432 235677777777655 344444444
Q ss_pred -HhhCCceEEeCCeEEccHH
Q 044627 466 -LAGKALITISNNKLQMRDL 484 (524)
Q Consensus 466 -L~~~sLi~~~~~~~~mH~l 484 (524)
|++.++|+.......+-+.
T Consensus 288 ~~i~~~li~~~~~g~~~~~~ 307 (324)
T 1hqc_A 288 YLIRQGLLKRTPRGRVPTEL 307 (324)
T ss_dssp HHHHTTSEEEETTEEEECHH
T ss_pred HHHHhcchhcCCccceecHH
Confidence 8889999877433344433
No 25
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=3e-09 Score=105.37 Aligned_cols=187 Identities=13% Similarity=0.128 Sum_probs=112.7
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQI 263 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 263 (524)
.....++|++..++.+..++..+. .+.+.|+|++|+|||++|+.+++.+........++.. . .+...+...+. ..
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~-~~ 96 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLEL-N-ASDERGINVIR-EK 96 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEE-E-TTCHHHHHTTH-HH
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEe-e-ccccCchHHHH-HH
Confidence 345679999999999999997643 3348999999999999999999986433211222220 0 11111111111 11
Q ss_pred HHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCChhhh-hh-cCCCeEE
Q 044627 264 LSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKKVL-DK-YGVDYVY 339 (524)
Q Consensus 264 l~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~~~-~~-~~~~~~~ 339 (524)
+.......+ ...+++.++|+|+++.. +..+.+...+.....++++|+||...... .. ......+
T Consensus 97 ~~~~~~~~~------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 97 VKEFARTKP------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp HHHHHHSCC------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred HHHHHhhCC------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 111000000 01256789999999753 34444544443334677888888764321 11 1123478
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 044627 340 KVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLR 389 (524)
Q Consensus 340 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 389 (524)
.+.+++.++..+++...+...+. .-..+....+++.++|.|..+..+.
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 99999999999999877643221 1224567889999999998655443
No 26
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.96 E-value=1.3e-08 Score=100.32 Aligned_cols=178 Identities=13% Similarity=0.066 Sum_probs=112.6
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc-cccc-eeEeeeecccccccCHHHHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS-QFEG-RSFMANVREESKRVELEHLRD 261 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~~-~~wv~~~~~~~~~~~~~~l~~ 261 (524)
.....++|++..++.+.+++..+. .+.+.|+|++|+|||++|+.+++.+.. .+.. .+.+. .+...+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~------ 81 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN----ASDERG------ 81 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE----TTSTTC------
T ss_pred CCHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe----CccccC------
Confidence 334569999999999999997643 334889999999999999999997632 2221 12222 111000
Q ss_pred HHHHHHhCCCCcccCCchHHHHHHh------ccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCChh-hhhh
Q 044627 262 QILSQILGENIIKTSIPPRYINKRL------QQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKK-VLDK 332 (524)
Q Consensus 262 ~ll~~l~~~~~~~~~~~~~~l~~~L------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~-~~~~ 332 (524)
.+.....+.... .+++.++|+|+++.. +..+.+...+.....++.+|+||.... +...
T Consensus 82 -------------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~ 148 (319)
T 2chq_A 82 -------------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148 (319)
T ss_dssp -------------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHH
T ss_pred -------------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchH
Confidence 011111122111 245789999999643 345556665555556778888876543 1111
Q ss_pred -cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHH
Q 044627 333 -YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVL 388 (524)
Q Consensus 333 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 388 (524)
......+++.+++.++..+++...+...+.. -..+.+..+++.++|.+..+...
T Consensus 149 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 149 IQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp HHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1234589999999999999998776433221 22456788889999999865433
No 27
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.95 E-value=1.3e-08 Score=102.86 Aligned_cols=193 Identities=12% Similarity=0.048 Sum_probs=112.8
Q ss_pred CCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHH
Q 044627 185 NSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQIL 264 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll 264 (524)
....++|++..++.+...+..+. ....+.|+|++|+||||+|+.+++.+....... ... . ..... ...+.
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~----~---~~~~~-~~~~~ 83 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATP----C---GVCDN-CREIE 83 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSC----C---SSSHH-HHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCC----C---cccHH-HHHHh
Confidence 44569999999999999997643 245788999999999999999998764332100 000 0 00000 00110
Q ss_pred HHHhCC------CCcccCCchHHHHHHhc-----cCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCChh-hh
Q 044627 265 SQILGE------NIIKTSIPPRYINKRLQ-----QMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKK-VL 330 (524)
Q Consensus 265 ~~l~~~------~~~~~~~~~~~l~~~L~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~-~~ 330 (524)
...... ...........+.+.+. +++.++|+||++.. ...+.+...+.....+..+|++|.+.. +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 000000 00001112223333332 45789999999643 344555444433345667777776442 21
Q ss_pred hh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 044627 331 DK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLR 389 (524)
Q Consensus 331 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 389 (524)
.. ......+++.+++.++..+++...+...+.. -..+.+..+++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 11 1234688999999999999998765332211 124557889999999998876554
No 28
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.88 E-value=7.1e-08 Score=96.11 Aligned_cols=260 Identities=12% Similarity=0.082 Sum_probs=150.0
Q ss_pred CCCCccchhhhHHhhhhhhhcC---CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHH
Q 044627 185 NSEDLVGVDSHIQRINSLLCIG---LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRD 261 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~~---~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~ 261 (524)
....++|++..++.+..++... ......|.|+|++|+|||+||+.+++.....|- .+. .........
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~---~~~----~~~~~~~~~--- 96 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIK---TTA----APMIEKSGD--- 96 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE---EEE----GGGCCSHHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE---Eec----chhccchhH---
Confidence 4567999999999999988752 234567889999999999999999887654431 122 111111111
Q ss_pred HHHHHHhCCCCcccCCchHHHHHHh--ccCCeEEEecCCCCh--hhHHHHhCCCCC------------------CCCCcE
Q 044627 262 QILSQILGENIIKTSIPPRYINKRL--QQMKVCIILDNVDKF--GHSEYLTGGLSR------------------FGHGSR 319 (524)
Q Consensus 262 ~ll~~l~~~~~~~~~~~~~~l~~~L--~~~~~LlVlDdv~~~--~~~~~l~~~~~~------------------~~~gs~ 319 (524)
+...+ ..+..+|+||+++.. .....+...+.. ..+...
T Consensus 97 --------------------~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 97 --------------------LAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp --------------------HHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred --------------------HHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 11111 235678999999643 222222211110 011345
Q ss_pred EEEecCChhhhh-h--cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHh----
Q 044627 320 VIVTTRDKKVLD-K--YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSF---- 392 (524)
Q Consensus 320 IIiTTR~~~~~~-~--~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l---- 392 (524)
+|.+|....... . ......+.+.+++.++..+++...+..... .-..+....+++.+.|+|-.+..+...+
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 666665432211 1 123468999999999999999877643221 1224567788889999996655443322
Q ss_pred --cC---CCHHHHHHHHhcCCCCCCccHHHHHHHhHhcCChHHHHHHhhccccc-CCCCHHHHHHHHhhc-cchhHhHH-
Q 044627 393 --YR---KSKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIACFF-NGEGRDYVKIILNNR-YLVHYGLN- 464 (524)
Q Consensus 393 --~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~-~~~~~~~l~~l~~~~-~~~~~~l~- 464 (524)
.+ -+.+.....+.. +..+...++..++.++..++-.. ...+...+...+... ......++
T Consensus 235 ~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~ 302 (338)
T 3pfi_A 235 DVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEP 302 (338)
T ss_dssp HHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHH
T ss_pred HhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 11 123333332222 12223345555566666555442 225677777777665 55555666
Q ss_pred HHhhCCceEEe-CCeEEccHHHHHH
Q 044627 465 ILAGKALITIS-NNKLQMRDLLQEM 488 (524)
Q Consensus 465 ~L~~~sLi~~~-~~~~~mH~lv~~~ 488 (524)
.|++.++|... .|++....-+.-+
T Consensus 303 ~l~~~gli~~~~~g~~~t~~~~~~~ 327 (338)
T 3pfi_A 303 YLLANGYIERTAKGRIASAKSYSAL 327 (338)
T ss_dssp HHHHTTSEEEETTEEEECHHHHHHH
T ss_pred HHHHcCceecCCCcccccHHHHHHh
Confidence 89999999877 5665444333333
No 29
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.6e-08 Score=99.16 Aligned_cols=166 Identities=13% Similarity=0.069 Sum_probs=100.4
Q ss_pred CCccchhhhHHhhhhhhhc--CCCCceEEEeeccccchHHHHHHHHHhhhcccc-----cc--eeEeeeecccccccCHH
Q 044627 187 EDLVGVDSHIQRINSLLCI--GLPDFRMVRPWDMHGIAKTDIARAILNQISSQF-----EG--RSFMANVREESKRVELE 257 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-----~~--~~wv~~~~~~~~~~~~~ 257 (524)
..+.|||.|+++|...|.. .....+.+.|+|++|+|||++++.+++.+.... +. .+.+. .....+..
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~t~~ 95 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC--H
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccCCHH
Confidence 3488999999999988875 234567889999999999999999999875422 11 33343 23345666
Q ss_pred HHHHHHHHHHhCCCCcccCCchHHHHHHh------ccCCeEEEecCCCChhh---HHHHhCCCCCCCCCcEEEEecCChh
Q 044627 258 HLRDQILSQILGENIIKTSIPPRYINKRL------QQMKVCIILDNVDKFGH---SEYLTGGLSRFGHGSRVIVTTRDKK 328 (524)
Q Consensus 258 ~l~~~ll~~l~~~~~~~~~~~~~~l~~~L------~~~~~LlVlDdv~~~~~---~~~l~~~~~~~~~gs~IIiTTR~~~ 328 (524)
.++..|+.++.+.... .......+.+.+ .+++++++||+++...+ +..+............||.++....
T Consensus 96 ~~~~~I~~~L~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 96 ALYEKIWFAISKENLC-GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHHhcCCCCC-chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 7888888888654321 122333444333 34578999999976532 2222211000011222333343321
Q ss_pred h----h-----hhcCCCeEEEcCCCCHHHHHHHHHHhhh
Q 044627 329 V----L-----DKYGVDYVYKVEGFNYRESLEIFCYYAF 358 (524)
Q Consensus 329 ~----~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 358 (524)
. + ..+ ....+.+++++.+|-.+++..++-
T Consensus 175 ~~~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 175 TIREQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCHHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 1 121 125789999999999999987753
No 30
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.83 E-value=9.4e-09 Score=96.88 Aligned_cols=174 Identities=11% Similarity=0.058 Sum_probs=100.9
Q ss_pred CCCCccchh---hhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHH
Q 044627 185 NSEDLVGVD---SHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRD 261 (524)
Q Consensus 185 ~~~~~vGR~---~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~ 261 (524)
..+.|+|++ ..++.+..++..+ ..+.+.|+|++|+|||+||+.+++........+.|+. ......
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~----~~~~~~------ 93 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP----LGIHAS------ 93 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE----GGGGGG------
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----HHHHHH------
Confidence 446688743 5556666665532 3567889999999999999999998765544455655 111000
Q ss_pred HHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChhh----HHHHhCCCCCC-CCCc-EEEEecCChh-------
Q 044627 262 QILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFGH----SEYLTGGLSRF-GHGS-RVIVTTRDKK------- 328 (524)
Q Consensus 262 ~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~----~~~l~~~~~~~-~~gs-~IIiTTR~~~------- 328 (524)
. ....+ +.+ .++.+||+||++.... .+.+...+... ..+. ++|+||+...
T Consensus 94 --------~-------~~~~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 94 --------I-------STALL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp --------S-------CGGGG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred --------H-------HHHHH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence 0 00000 011 3467899999964321 22222211100 1122 4777776422
Q ss_pred --hhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 044627 329 --VLDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLR 389 (524)
Q Consensus 329 --~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 389 (524)
+...+.....+.+++++.++..+++...+...... -..+....+++.++|++-.+..+.
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ--LPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCHHHHHHHH
Confidence 11111122679999999999999998776432211 124567888999999987765543
No 31
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.76 E-value=2.6e-08 Score=96.73 Aligned_cols=182 Identities=18% Similarity=0.204 Sum_probs=104.4
Q ss_pred cCCCCCCccchhhhHHhhhhhhhcC-----------CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccc
Q 044627 182 HFGNSEDLVGVDSHIQRINSLLCIG-----------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREE 250 (524)
Q Consensus 182 ~~~~~~~~vGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~ 250 (524)
+......++|.+..+++|...+... ....+.+.|+|++|+|||+||+.+++.....|- .+. ....
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~---~v~-~~~~ 87 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI---RVV-GSEL 87 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE---EEE-GGGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-hHHH
Confidence 3344567999999999998877531 134567899999999999999999998754332 121 1101
Q ss_pred ccc-c-CHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh----------------hhHHHHhCCCC
Q 044627 251 SKR-V-ELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF----------------GHSEYLTGGLS 312 (524)
Q Consensus 251 ~~~-~-~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~----------------~~~~~l~~~~~ 312 (524)
... . ....... ..+.......+.+|+||+++.. ..+..++..+.
T Consensus 88 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 149 (285)
T 3h4m_A 88 VKKFIGEGASLVK------------------DIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD 149 (285)
T ss_dssp CCCSTTHHHHHHH------------------HHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHH------------------HHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh
Confidence 000 0 0011111 1112222345789999999643 11222222111
Q ss_pred --CCCCCcEEEEecCChhhhh-----hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcC-ChHH
Q 044627 313 --RFGHGSRVIVTTRDKKVLD-----KYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANG-SSLA 384 (524)
Q Consensus 313 --~~~~gs~IIiTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLa 384 (524)
....+..||.||....... .......+.++.++.++..+++........... ......++..+.| .|-.
T Consensus 150 ~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~l~~~~~g~~~~~ 226 (285)
T 3h4m_A 150 GFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE---DVNLEEIAKMTEGCVGAE 226 (285)
T ss_dssp TTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHHCTTCCHHH
T ss_pred CCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC---cCCHHHHHHHcCCCCHHH
Confidence 1123567788887553322 112335789999999999999987764332211 1114567777777 4545
Q ss_pred HHHH
Q 044627 385 LNVL 388 (524)
Q Consensus 385 l~~~ 388 (524)
|..+
T Consensus 227 i~~l 230 (285)
T 3h4m_A 227 LKAI 230 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 32
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.76 E-value=2.7e-08 Score=89.94 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=42.0
Q ss_pred CCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 185 NSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
....++||+.+++++.+.+... ..+.+.|+|++|+|||+||+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4467999999999999998763 3456789999999999999999997643
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.71 E-value=4.2e-07 Score=91.27 Aligned_cols=203 Identities=15% Similarity=0.117 Sum_probs=114.5
Q ss_pred chhhhHHHHHhhccccccccccCCCCCCccchhhhHHhhhhhhhc----------CCCCceEEEeeccccchHHHHHHHH
Q 044627 161 HEAELVDEIVKDILKKIHDISHFGNSEDLVGVDSHIQRINSLLCI----------GLPDFRMVRPWDMHGIAKTDIARAI 230 (524)
Q Consensus 161 ~e~~~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~ 230 (524)
.+...++.+...+..+.+ +..-..++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+.+
T Consensus 62 ~~~~~~~~i~~~i~~~~~----~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 62 LEPKMIELIMNEIMDHGP----PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp SCHHHHHHHHHHTBCCSC----CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred CChHHHHHHHhhcccCCC----CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence 345566666666655432 33446799999999999887752 1123567899999999999999999
Q ss_pred HhhhcccccceeEeeeecccccc-cC-HHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh-------
Q 044627 231 LNQISSQFEGRSFMANVREESKR-VE-LEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF------- 301 (524)
Q Consensus 231 ~~~~~~~f~~~~wv~~~~~~~~~-~~-~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~------- 301 (524)
++.....| +.+. ....... .+ .....+. .+......++.+|+||+++..
T Consensus 138 a~~~~~~~---~~i~-~~~l~~~~~g~~~~~~~~------------------~~~~a~~~~~~vl~iDEid~l~~~~~~~ 195 (357)
T 3d8b_A 138 ASQSGATF---FSIS-ASSLTSKWVGEGEKMVRA------------------LFAVARCQQPAVIFIDEIDSLLSQRGDG 195 (357)
T ss_dssp HHHTTCEE---EEEE-GGGGCCSSTTHHHHHHHH------------------HHHHHHHTCSEEEEEETHHHHTBC----
T ss_pred HHHcCCeE---EEEe-hHHhhccccchHHHHHHH------------------HHHHHHhcCCeEEEEeCchhhhccCCCC
Confidence 98764332 2222 1111000 00 0111111 111122346789999999532
Q ss_pred ------hhHHHHhC----CCCCCCCCcEEEEecCChhhhhh---cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHH
Q 044627 302 ------GHSEYLTG----GLSRFGHGSRVIVTTRDKKVLDK---YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLL 368 (524)
Q Consensus 302 ------~~~~~l~~----~~~~~~~gs~IIiTTR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~ 368 (524)
.....++. .......+..||.||.....+.. -.....+.+...+.++..+++...+...... -..
T Consensus 196 ~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~ 273 (357)
T 3d8b_A 196 EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSE 273 (357)
T ss_dssp --CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCH
T ss_pred cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccH
Confidence 11222222 11111234556666754322111 1344578899999999998887765332211 113
Q ss_pred HHHHHHHHHhcC-ChHHHHHHHHH
Q 044627 369 VLSDNVVDYANG-SSLALNVLRSS 391 (524)
Q Consensus 369 ~~~~~i~~~~~g-~PLal~~~~~~ 391 (524)
+....+++.+.| .+-.|..+...
T Consensus 274 ~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 274 EEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHH
Confidence 457788889988 55667666543
No 34
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.71 E-value=1e-07 Score=98.50 Aligned_cols=202 Identities=10% Similarity=0.089 Sum_probs=117.2
Q ss_pred CCCcc-chhhhH--HhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccc--eeEeeeecccccccCHHHHH
Q 044627 186 SEDLV-GVDSHI--QRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEG--RSFMANVREESKRVELEHLR 260 (524)
Q Consensus 186 ~~~~v-GR~~el--~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~l~ 260 (524)
.+.|| |....+ ..+......... ...+.|+|++|+||||||+.+++.+...++. ++++. ...+.
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~----------~~~~~ 172 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFL 172 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE----------HHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHH
Confidence 34566 654433 233333333222 6678999999999999999999987665543 33333 12233
Q ss_pred HHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh----hHHHHhCCCCC-CCCCcEEEEecCCh--------
Q 044627 261 DQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG----HSEYLTGGLSR-FGHGSRVIVTTRDK-------- 327 (524)
Q Consensus 261 ~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IIiTTR~~-------- 327 (524)
..+...+... ....+.+.+..+.-+|+|||++... ..+.+...+.. ...|..||+||.+.
T Consensus 173 ~~~~~~~~~~-------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 173 NDLVDSMKEG-------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHHHHHHHTT-------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC
T ss_pred HHHHHHHHcc-------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH
Confidence 3444433321 2233444444467799999995332 22223222110 12467888888763
Q ss_pred -hhhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCC-CCCccHHHHHHHHHHHhcCChHHHHHHHHH------hcC--CCH
Q 044627 328 -KVLDKYGVDYVYKVEGFNYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSSLALNVLRSS------FYR--KSK 397 (524)
Q Consensus 328 -~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~PLal~~~~~~------l~~--~~~ 397 (524)
.+...+.....+.+++++.++..+++...+.... ..+ .+.+..|++.++|.+--+..+... +.+ -+.
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~ 322 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDL 322 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 1222222235688999999999999987764322 122 234678889999998765433222 223 366
Q ss_pred HHHHHHHhcCC
Q 044627 398 QHWENALHNPK 408 (524)
Q Consensus 398 ~~w~~~l~~l~ 408 (524)
+.+..++..+.
T Consensus 323 ~~~~~~l~~~~ 333 (440)
T 2z4s_A 323 KEAILLLKDFI 333 (440)
T ss_dssp HHHHHHTSTTT
T ss_pred HHHHHHHHHHh
Confidence 77777777654
No 35
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=4.8e-07 Score=90.46 Aligned_cols=193 Identities=10% Similarity=0.116 Sum_probs=109.3
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc--ccc-eeEeeeecccccccCHHHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ--FEG-RSFMANVREESKRVELEHLR 260 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~--f~~-~~wv~~~~~~~~~~~~~~l~ 260 (524)
.....++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++.+... +.. ...+. .+...+...+.
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~----~~~~~~~~~~~ 107 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN----ASDERGISIVR 107 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC----SSSCCCHHHHT
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc----cccccchHHHH
Confidence 345679999999999999997643 2238899999999999999999876421 221 12222 11112222222
Q ss_pred HHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCChh-hhhhc-CCC
Q 044627 261 DQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKK-VLDKY-GVD 336 (524)
Q Consensus 261 ~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~-~~~~~-~~~ 336 (524)
.. ......... ...........-...+-+|++|+++.. .....+...+.......++|++|.... +.... ...
T Consensus 108 ~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 108 EK-VKNFARLTV--SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp TH-HHHHHHSCC--CCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HH-HHHHhhhcc--cccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 11 111111100 000000011111234569999999643 233344433332334567777765432 11111 112
Q ss_pred eEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHH
Q 044627 337 YVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNV 387 (524)
Q Consensus 337 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 387 (524)
..+.+.+++.++..+.+...+...... -..+....|++.++|.|..+..
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 478999999999999988765432211 1245678999999999986543
No 36
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=3.3e-07 Score=96.73 Aligned_cols=190 Identities=15% Similarity=0.131 Sum_probs=105.2
Q ss_pred CCCCCccchhhhHHhhhhhhhcCC---------------CCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeec
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGL---------------PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVR 248 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~---------------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~ 248 (524)
.....++|++..++.|..+|.... +..+.+.|+|++|+|||+||+.+++... ++ .+.+.
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in--- 109 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN--- 109 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC---
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe---
Confidence 345679999999999999986510 1347899999999999999999999873 22 22232
Q ss_pred ccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHH--hccCCeEEEecCCCChh-----hHHHHhCCCCCCCCCcEEE
Q 044627 249 EESKRVELEHLRDQILSQILGENIIKTSIPPRYINKR--LQQMKVCIILDNVDKFG-----HSEYLTGGLSRFGHGSRVI 321 (524)
Q Consensus 249 ~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~--L~~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~II 321 (524)
.+..... .+....+....... . ........... ...++.+|++|+++... .+..+...+.. .+..||
T Consensus 110 -~s~~~~~-~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iI 183 (516)
T 1sxj_A 110 -ASDVRSK-TLLNAGVKNALDNM-S-VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLI 183 (516)
T ss_dssp -TTSCCCH-HHHHHTGGGGTTBC-C-STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEE
T ss_pred -CCCcchH-HHHHHHHHHHhccc-c-HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEE
Confidence 2222221 12222211111100 0 00111111001 13568899999996431 12333222211 233355
Q ss_pred EecCCh---hhhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCC-CCCccHHHHHHHHHHHhcCCh-HHHHHH
Q 044627 322 VTTRDK---KVLDKYGVDYVYKVEGFNYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSS-LALNVL 388 (524)
Q Consensus 322 iTTR~~---~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P-Lal~~~ 388 (524)
+++.+. .+.........+.+++++.++..+++...+.... ..+ .+.+..|++.++|.+ -++..+
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 554432 2222223456789999999999999887664332 122 234678889999855 445544
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.63 E-value=6.6e-07 Score=86.21 Aligned_cols=168 Identities=13% Similarity=0.106 Sum_probs=90.4
Q ss_pred CCccchhhhHHhhhh-------hhhc-CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHH
Q 044627 187 EDLVGVDSHIQRINS-------LLCI-GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEH 258 (524)
Q Consensus 187 ~~~vGR~~el~~l~~-------~L~~-~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (524)
..++|....++.+.. .+.. .....+.+.|+|++|+|||+||+.+++.....| +.+. ............
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~-~~~~~~g~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKIC-SPDKMIGFSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEE-CGGGCTTCCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-CHHHhcCCchHH
Confidence 457787777666655 2321 234567899999999999999999999754322 1121 000000000000
Q ss_pred HHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh------------hhHHHHhCCCCC---CCCCcEEEEe
Q 044627 259 LRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF------------GHSEYLTGGLSR---FGHGSRVIVT 323 (524)
Q Consensus 259 l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~------------~~~~~l~~~~~~---~~~gs~IIiT 323 (524)
.... ....+......+..+|+||+++.. ..++.+...+.. .+....||.|
T Consensus 109 ~~~~---------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~t 173 (272)
T 1d2n_A 109 KCQA---------------MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGT 173 (272)
T ss_dssp HHHH---------------HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEE
T ss_pred HHHH---------------HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEe
Confidence 0000 111122223356789999998543 112333322221 2234456777
Q ss_pred cCChhhhhhc----CCCeEEEcCCCCH-HHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcC
Q 044627 324 TRDKKVLDKY----GVDYVYKVEGFNY-RESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANG 380 (524)
Q Consensus 324 TR~~~~~~~~----~~~~~~~l~~L~~-~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g 380 (524)
|..+..+... .....+.+++++. ++..+++.... ..+ .+....+++.+.|
T Consensus 174 tn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~~---~~~~~~l~~~~~g 228 (272)
T 1d2n_A 174 TSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NFK---DKERTTIAQQVKG 228 (272)
T ss_dssp ESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CSC---HHHHHHHHHHHTT
T ss_pred cCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CCC---HHHHHHHHHHhcC
Confidence 8776544331 1246789999988 55555555421 111 3456778888877
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.60 E-value=1.2e-06 Score=88.11 Aligned_cols=197 Identities=14% Similarity=0.034 Sum_probs=105.4
Q ss_pred CCCccchhhhHHhh---hhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHH
Q 044627 186 SEDLVGVDSHIQRI---NSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQ 262 (524)
Q Consensus 186 ~~~~vGR~~el~~l---~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 262 (524)
.+.|+|++..++.+ ...+..+....+.+.|+|++|+|||+||+.+++.+....+.. .+....-.+..........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT-AIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE-EEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc-cccchhhhhcccchhHHHHH
Confidence 56799999997775 444444433346889999999999999999999876432211 11100001112222233333
Q ss_pred HHHHHhCC--------------------CC-c---c----cCCchHHHHHHh---------ccC----CeEEEecCCCCh
Q 044627 263 ILSQILGE--------------------NI-I---K----TSIPPRYINKRL---------QQM----KVCIILDNVDKF 301 (524)
Q Consensus 263 ll~~l~~~--------------------~~-~---~----~~~~~~~l~~~L---------~~~----~~LlVlDdv~~~ 301 (524)
.+....+. .+ . . .......+++.+ .++ +.+|+||+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 32221110 00 0 0 001112222211 122 359999999654
Q ss_pred --hhHHHHhCCCCCCCCCcEEEEecCC-----------------hhhhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCC
Q 044627 302 --GHSEYLTGGLSRFGHGSRVIVTTRD-----------------KKVLDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNH 362 (524)
Q Consensus 302 --~~~~~l~~~~~~~~~gs~IIiTTR~-----------------~~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~ 362 (524)
+....+...+...... .++++|.. +.+.. ....+.+++++.++..+++...+.....
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3344444444332223 34444421 12222 2245899999999999999877644322
Q ss_pred CCccHHHHHHHHHHHhc-CChHHHHHHH
Q 044627 363 CPGDLLVLSDNVVDYAN-GSSLALNVLR 389 (524)
Q Consensus 363 ~~~~~~~~~~~i~~~~~-g~PLal~~~~ 389 (524)
. -..+....+++.+. |.|-.+..+.
T Consensus 278 ~--~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 278 E--MSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp C--BCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred C--CCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 1 22456788899997 8886654443
No 39
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.60 E-value=3.5e-07 Score=87.37 Aligned_cols=183 Identities=15% Similarity=0.086 Sum_probs=99.6
Q ss_pred CCCccchhhhHHhhhhhhhc---C-------CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccC
Q 044627 186 SEDLVGVDSHIQRINSLLCI---G-------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVE 255 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~---~-------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (524)
-+.++|.+..++.|.+++.. . ....+.+.|+|++|+|||+||+.+++.....| +.+. .........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhcc
Confidence 35689999888888765532 1 12345688999999999999999999765432 2222 110100000
Q ss_pred HHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh-----------------hHHHHhCCCCC--CCC
Q 044627 256 LEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG-----------------HSEYLTGGLSR--FGH 316 (524)
Q Consensus 256 ~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~--~~~ 316 (524)
- . ... .....+.......+.+|+||+++... .+..++..+.. ...
T Consensus 81 ~-~-~~~--------------~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 81 G-L-GAA--------------RVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp T-H-HHH--------------HHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred C-h-hHH--------------HHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0 0 000 00111222223457899999997541 12223222111 123
Q ss_pred CcEEEEecCChhhhhh--c---CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH-HHHHHH
Q 044627 317 GSRVIVTTRDKKVLDK--Y---GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVLR 389 (524)
Q Consensus 317 gs~IIiTTR~~~~~~~--~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~ 389 (524)
+..||.||.....+.. . .....+.++.++.++-.+++...+..... ..........+++.+.|.+- .|..+.
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 5566777765432211 1 23467889999999999999877643322 11222234678888888754 454443
No 40
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.60 E-value=7.9e-07 Score=87.98 Aligned_cols=179 Identities=9% Similarity=0.077 Sum_probs=99.0
Q ss_pred CCCCcc-chhhh--HHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHH
Q 044627 185 NSEDLV-GVDSH--IQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRD 261 (524)
Q Consensus 185 ~~~~~v-GR~~e--l~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~ 261 (524)
..++|+ |.... ...+...+..+......+.|+|++|+||||||+.+++.....-..++++. ...+..
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~----------~~~~~~ 78 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS----------ADDFAQ 78 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE----------HHHHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE----------HHHHHH
Confidence 345565 54332 33444544443223567889999999999999999997754322234444 122233
Q ss_pred HHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh----hHHHHhCCCCC-CCCCcEEEEecCChh--------
Q 044627 262 QILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG----HSEYLTGGLSR-FGHGSRVIVTTRDKK-------- 328 (524)
Q Consensus 262 ~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IIiTTR~~~-------- 328 (524)
.+...+... ....+...+. +..+|+||+++... ..+.+...+.. ...+..||+||.+..
T Consensus 79 ~~~~~~~~~-------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~ 150 (324)
T 1l8q_A 79 AMVEHLKKG-------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSD 150 (324)
T ss_dssp HHHHHHHHT-------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCH
T ss_pred HHHHHHHcC-------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhh
Confidence 333332211 1222333332 36799999996432 12222221110 123567888776431
Q ss_pred -hhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHH
Q 044627 329 -VLDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (524)
Q Consensus 329 -~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 385 (524)
+...+.....+.+++ +.++..+++...+...... -..+....+++.+ |.+-.+
T Consensus 151 ~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 151 RLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHHH
T ss_pred HhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHHH
Confidence 122222335789999 9999999998876433221 1245677888888 776543
No 41
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.55 E-value=7.2e-07 Score=92.04 Aligned_cols=197 Identities=11% Similarity=0.125 Sum_probs=112.8
Q ss_pred CCCCCCccchhhhH---HhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHH
Q 044627 183 FGNSEDLVGVDSHI---QRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHL 259 (524)
Q Consensus 183 ~~~~~~~vGR~~el---~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 259 (524)
|.....+||.+..+ ..|...+..+. .+.+.|+|++|+||||||+.+++.....|.. +. ....+...+
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~-----a~~~~~~~i 91 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANADVER---IS-----AVTSGVKEI 91 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE-----TTTCCHHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE-----eccCCHHHH
Confidence 34456799999988 67777776543 4678999999999999999999987544321 11 111222222
Q ss_pred HHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh--hHHHHhCCCCCCCCCcEEE-EecCChhh--h-hhc
Q 044627 260 RDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG--HSEYLTGGLSRFGHGSRVI-VTTRDKKV--L-DKY 333 (524)
Q Consensus 260 ~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~II-iTTR~~~~--~-~~~ 333 (524)
. .++... ......+++.+|+||+++... +.+.|+..+.. ....+| .||.+... . ...
T Consensus 92 r-~~~~~a--------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 92 R-EAIERA--------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALL 154 (447)
T ss_dssp H-HHHHHH--------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHH
T ss_pred H-HHHHHH--------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHh
Confidence 1 111110 011124568899999997542 23333333321 123333 35555421 1 111
Q ss_pred CCCeEEEcCCCCHHHHHHHHHHhhhcCC-----CCCccHHHHHHHHHHHhcCChHHHHHHHHHh----c----C---CCH
Q 044627 334 GVDYVYKVEGFNYRESLEIFCYYAFRQN-----HCPGDLLVLSDNVVDYANGSSLALNVLRSSF----Y----R---KSK 397 (524)
Q Consensus 334 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l----~----~---~~~ 397 (524)
.....+.+.+++.++..+++........ ....-..+....+++.++|.+-.+..+...+ . + -+.
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~ 234 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKP 234 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCH
Confidence 2345789999999999999887754311 1111235667888899999887554333222 1 1 255
Q ss_pred HHHHHHHhc
Q 044627 398 QHWENALHN 406 (524)
Q Consensus 398 ~~w~~~l~~ 406 (524)
+....++..
T Consensus 235 e~v~~~l~~ 243 (447)
T 3pvs_A 235 ELLTEIAGE 243 (447)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 666666654
No 42
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.55 E-value=1.6e-06 Score=85.75 Aligned_cols=185 Identities=14% Similarity=0.087 Sum_probs=105.2
Q ss_pred CCCCCCccchhhhHHhhhhhhh----------cCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccccc
Q 044627 183 FGNSEDLVGVDSHIQRINSLLC----------IGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESK 252 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~----------~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~ 252 (524)
...-..++|.+..++.|...+. ......+.|.|+|++|+|||+||+++++.....| +.+. .
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~-~----- 84 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-S----- 84 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE-H-----
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc-h-----
Confidence 3345679999999999988772 1122346789999999999999999999865432 1122 1
Q ss_pred ccCHHHHHHHHHHHHhCCCCcccCCchHHH-HHHhccCCeEEEecCCCChhh-------------HHHHhCC---CCCCC
Q 044627 253 RVELEHLRDQILSQILGENIIKTSIPPRYI-NKRLQQMKVCIILDNVDKFGH-------------SEYLTGG---LSRFG 315 (524)
Q Consensus 253 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l-~~~L~~~~~LlVlDdv~~~~~-------------~~~l~~~---~~~~~ 315 (524)
..+ .....+. .......+ ......++.+|+||+++.... ...++.. .....
T Consensus 85 ----~~l----~~~~~g~----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 85 ----SDL----VSKWMGE----SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp ----HHH----HTTTGGG----HHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred ----HHH----hhcccch----HHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 111 0000000 00011111 122234678999999974311 2222221 11123
Q ss_pred CCcEEEEecCChhhhhh---cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC-hHHHHHHHH
Q 044627 316 HGSRVIVTTRDKKVLDK---YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS-SLALNVLRS 390 (524)
Q Consensus 316 ~gs~IIiTTR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~~ 390 (524)
.+..||.||..+..+.. -.....+.++..+.++-.+++..++....... .......|++.+.|. +-.|..+..
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45666667765432211 12456788999999999999988764332111 134567888888874 545555543
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.55 E-value=2.5e-06 Score=88.10 Aligned_cols=186 Identities=13% Similarity=0.135 Sum_probs=107.1
Q ss_pred CCCCCCccchhhhHHhhhhhhhc----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccccc
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCI----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESK 252 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~ 252 (524)
+..-..++|.+..++.|...+.. .....+.|.|+|++|+|||+||+++++.... .-|+. ++.
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~----v~~ 201 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFS----ISS 201 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEE----ECC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEE----EeH
Confidence 34456799999999988876631 1123568899999999999999999997621 12222 111
Q ss_pred ccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHh-ccCCeEEEecCCCCh-------------hhHHHHhCCCCCC---C
Q 044627 253 RVELEHLRDQILSQILGENIIKTSIPPRYINKRL-QQMKVCIILDNVDKF-------------GHSEYLTGGLSRF---G 315 (524)
Q Consensus 253 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~---~ 315 (524)
. .+ . ....+. .......+.... ...+.+|+||+++.. .....++..+... .
T Consensus 202 ~-~l---~----~~~~g~----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 202 S-DL---V----SKWLGE----SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp C---------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred H-HH---H----hhhcch----HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 1 11 0 111111 112223333322 356889999999754 1234455444332 2
Q ss_pred CCcEEEEecCChhhhhh---cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC-hHHHHHHHH
Q 044627 316 HGSRVIVTTRDKKVLDK---YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS-SLALNVLRS 390 (524)
Q Consensus 316 ~gs~IIiTTR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~~ 390 (524)
.+..||.||..+..+.. -.....+.++..+.++-.++|..+....... ........|++.+.|. +-.|..+..
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS--LTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE--CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45667767765432111 1345678899999999989988776332211 1134567888888884 445555543
No 44
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.55 E-value=1.8e-06 Score=84.11 Aligned_cols=185 Identities=17% Similarity=0.086 Sum_probs=103.5
Q ss_pred cCCCCCCccchhhhHHhhhhhhhcC----------CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccc
Q 044627 182 HFGNSEDLVGVDSHIQRINSLLCIG----------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREES 251 (524)
Q Consensus 182 ~~~~~~~~vGR~~el~~l~~~L~~~----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~ 251 (524)
++..-..++|.+..++.|.+.+... ....+.+.|+|++|+|||+||+.+++.....|- .+. .....
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~---~i~-~~~l~ 91 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFL---NIS-AASLT 91 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEE---EEE-STTTS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE---Eee-HHHHh
Confidence 3444567999999999998877431 123567899999999999999999997653321 122 11000
Q ss_pred c--ccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh-------------hHHHHhC---CCCC
Q 044627 252 K--RVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG-------------HSEYLTG---GLSR 313 (524)
Q Consensus 252 ~--~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~---~~~~ 313 (524)
. ........+.+ +.......+.+|+||+++... ....++. ..+.
T Consensus 92 ~~~~~~~~~~~~~~------------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 153 (297)
T 3b9p_A 92 SKYVGDGEKLVRAL------------------FAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG 153 (297)
T ss_dssp SSSCSCHHHHHHHH------------------HHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-
T ss_pred hcccchHHHHHHHH------------------HHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc
Confidence 0 00111111111 111223467899999995431 1111211 1111
Q ss_pred --CCCCcEEEEecCChhhhhh---cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH-HHHH
Q 044627 314 --FGHGSRVIVTTRDKKVLDK---YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNV 387 (524)
Q Consensus 314 --~~~gs~IIiTTR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~ 387 (524)
.+.+..||.||..+..+.. -.....+.++..+.++...++...+...... -..+....+++.+.|.+- +|..
T Consensus 154 ~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 154 NPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp -----CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHH
Confidence 1234556667765432111 0244678888888888888887765332211 113456788899999876 5655
Q ss_pred HHH
Q 044627 388 LRS 390 (524)
Q Consensus 388 ~~~ 390 (524)
+..
T Consensus 232 l~~ 234 (297)
T 3b9p_A 232 LAK 234 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 45
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.54 E-value=8.5e-07 Score=88.77 Aligned_cols=196 Identities=11% Similarity=0.060 Sum_probs=105.4
Q ss_pred CCCCCccchhhhHHhhhhhh-hcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeee----------------
Q 044627 184 GNSEDLVGVDSHIQRINSLL-CIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMAN---------------- 246 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L-~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~---------------- 246 (524)
.....++|.+..++.+.+++ ..+. ... +.|+|++|+||||||+.+++.+.....+.+.+..
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 34467999999999999998 5432 233 8999999999999999999864222111111110
Q ss_pred -------ecccccc-cCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh--hHHHHhCCCCCCCC
Q 044627 247 -------VREESKR-VELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG--HSEYLTGGLSRFGH 316 (524)
Q Consensus 247 -------~~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~ 316 (524)
.. .+.. .......+.++..+..... ..... .+ .-+..++-++|||+++..+ ..+.+...+....+
T Consensus 89 ~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 89 SSPYHLEIT-PSDMGNNDRIVIQELLKEVAQMEQ--VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp ECSSEEEEC-CC----CCHHHHHHHHHHHTTTTC----------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred cccceEEec-HhhcCCcchHHHHHHHHHHHHhcc--ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcC
Confidence 00 0000 0000011222222211100 00000 00 0023466799999997543 23333333322235
Q ss_pred CcEEEEecCChh-hhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccH-HHHHHHHHHHhcCChHHHHHH
Q 044627 317 GSRVIVTTRDKK-VLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDL-LVLSDNVVDYANGSSLALNVL 388 (524)
Q Consensus 317 gs~IIiTTR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~-~~~~~~i~~~~~g~PLal~~~ 388 (524)
++.+|++|.+.. +... ......+++.+++.++..+.+...+...+.. -. .+.+..|++.++|.+-.+..+
T Consensus 164 ~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHH
Confidence 677887776532 2111 1233689999999999999998776432211 11 245678889999998765443
No 46
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.51 E-value=8.4e-07 Score=88.97 Aligned_cols=183 Identities=14% Similarity=0.110 Sum_probs=102.7
Q ss_pred CCCCCccchhhhHHhhhhhhhc----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccc
Q 044627 184 GNSEDLVGVDSHIQRINSLLCI----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKR 253 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (524)
..-..++|.+..++.|...+.. .....+.|.|+|++|+|||+||+++++.....| +.+. .
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~-~------ 117 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-S------ 117 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE-H------
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee-H------
Confidence 3446799999999999887631 112245688999999999999999999875332 1121 0
Q ss_pred cCHHHHHHHHHHHHhCCCCcccCCchHHHHH-HhccCCeEEEecCCCChh-------------hHHHHhCCC---CCCCC
Q 044627 254 VELEHLRDQILSQILGENIIKTSIPPRYINK-RLQQMKVCIILDNVDKFG-------------HSEYLTGGL---SRFGH 316 (524)
Q Consensus 254 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~-~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~---~~~~~ 316 (524)
..+ .....+. .......+.. ....++.+|+||+++... ....++..+ .....
T Consensus 118 ---~~l----~~~~~g~----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 118 ---SDL----VSKWMGE----SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp ---HHH----HSCC-------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred ---HHH----hhhhcch----HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 111 0000000 0011111111 223468899999997432 122222211 11123
Q ss_pred CcEEEEecCChhhhh---hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC-hHHHHHHH
Q 044627 317 GSRVIVTTRDKKVLD---KYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS-SLALNVLR 389 (524)
Q Consensus 317 gs~IIiTTR~~~~~~---~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~ 389 (524)
+..||.||..+..+. .-.....+.+...+.++-.+++..+........ .......|++.+.|. +-.|..+.
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 556666776442211 113557788999999999999987764322111 134567888889884 54455544
No 47
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.50 E-value=1.3e-06 Score=86.30 Aligned_cols=177 Identities=12% Similarity=0.143 Sum_probs=102.1
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQI 263 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 263 (524)
...+.++|.+..++.+.+++..+. ...++.++|++|+|||++|+.+++.+... .+.+. .+ ..+...+...
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~----~~-~~~~~~i~~~- 92 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN----GS-DCKIDFVRGP- 92 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE----TT-TCCHHHHHTH-
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc----cc-ccCHHHHHHH-
Confidence 445679999999999999998543 34678889999999999999999887432 23333 11 1222222211
Q ss_pred HHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh---hHHHHhCCCCCCCCCcEEEEecCChhhhh-h-cCCCeE
Q 044627 264 LSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG---HSEYLTGGLSRFGHGSRVIVTTRDKKVLD-K-YGVDYV 338 (524)
Q Consensus 264 l~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~IIiTTR~~~~~~-~-~~~~~~ 338 (524)
+....... ...+++.+|++|+++... ..+.|...+.....++++|+||....-.. . ......
T Consensus 93 ~~~~~~~~-------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 93 LTNFASAA-------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHHHHHBC-------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred HHHHHhhc-------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 11111000 012367899999998654 33444433332234667888877543111 0 011257
Q ss_pred EEcCCCCHHHHHHHH-------HHhhhcCCCCCccHHHHHHHHHHHhcCChHH
Q 044627 339 YKVEGFNYRESLEIF-------CYYAFRQNHCPGDLLVLSDNVVDYANGSSLA 384 (524)
Q Consensus 339 ~~l~~L~~~ea~~L~-------~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 384 (524)
+++++++.++-.+++ ...+....... ...+.+..+++.++|.+-.
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI-ADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCB-SCHHHHHHHHHHTCSCTTH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHhCCCCHHH
Confidence 899999988743332 22222111111 1125677888889887654
No 48
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.50 E-value=3.3e-06 Score=83.85 Aligned_cols=171 Identities=8% Similarity=0.013 Sum_probs=99.1
Q ss_pred hhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccccc---------------------ceeEeeeecccc
Q 044627 193 DSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFE---------------------GRSFMANVREES 251 (524)
Q Consensus 193 ~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~~wv~~~~~~~ 251 (524)
+...+.+...+..+. -.+.+.++|++|+|||++|+.+++.+..... ...++.... .+
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~-~~ 85 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK-GK 85 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT-TC
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc-cC
Confidence 344556666665432 3557889999999999999999997643321 112221000 00
Q ss_pred cccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCChh-
Q 044627 252 KRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKK- 328 (524)
Q Consensus 252 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~- 328 (524)
...+...+ +.+...+.... ..+++-++|+|+++.. +..+.|+..+....+++.+|++|.++.
T Consensus 86 ~~~~i~~i-r~l~~~~~~~~--------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~ 150 (334)
T 1a5t_A 86 NTLGVDAV-REVTEKLNEHA--------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPER 150 (334)
T ss_dssp SSBCHHHH-HHHHHHTTSCC--------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred CCCCHHHH-HHHHHHHhhcc--------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHh
Confidence 01111111 11111111000 1245778999999754 344555555544445677777776643
Q ss_pred hhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHH
Q 044627 329 VLDK-YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNV 387 (524)
Q Consensus 329 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 387 (524)
+... ......+++.+++.++..+.+.... .. ..+.+..+++.++|.|..+..
T Consensus 151 l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~---~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 151 LLATLRSRCRLHYLAPPPEQYAVTWLSREV----TM---SQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CC---CHHHHHHHHHHTTTCHHHHHH
T ss_pred CcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 2222 1234689999999999999988764 11 134567889999999976543
No 49
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.46 E-value=1.6e-06 Score=84.91 Aligned_cols=150 Identities=13% Similarity=0.062 Sum_probs=87.5
Q ss_pred CccchhhhHHhhhhhhhcC-------------CCCceEEEeeccccchHHHHHHHHHhhhccccc--ceeEee-eecccc
Q 044627 188 DLVGVDSHIQRINSLLCIG-------------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFE--GRSFMA-NVREES 251 (524)
Q Consensus 188 ~~vGR~~el~~l~~~L~~~-------------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~wv~-~~~~~~ 251 (524)
.++|.+..++.|.+++... ......+.|+|++|+|||+||+.+++.+..... ..-++. +.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 4889999888888765421 233557889999999999999999987643221 111222 110000
Q ss_pred cccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhc-cCCeEEEecCCCC-----------hhhHHHHhCCCCCCCCCcE
Q 044627 252 KRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQ-QMKVCIILDNVDK-----------FGHSEYLTGGLSRFGHGSR 319 (524)
Q Consensus 252 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~gs~ 319 (524)
.. ........+...+. .+..+|+||+++. ......|...+.....+..
T Consensus 112 -----------------~~---~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 112 -----------------GQ---YIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp -----------------CS---STTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred -----------------hh---cccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 00 00011111122221 1456999999973 3334444444433345667
Q ss_pred EEEecCChh----------hhhhcCCCeEEEcCCCCHHHHHHHHHHhhhc
Q 044627 320 VIVTTRDKK----------VLDKYGVDYVYKVEGFNYRESLEIFCYYAFR 359 (524)
Q Consensus 320 IIiTTR~~~----------~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 359 (524)
+|+||.... +... ....+.+++++.++-.+++...+..
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 888876432 2222 2367899999999999999877643
No 50
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.45 E-value=6.7e-06 Score=81.16 Aligned_cols=182 Identities=13% Similarity=0.106 Sum_probs=101.9
Q ss_pred CCCCccchhhhHHhhhhhhhc----------CCCCceEEEeeccccchHHHHHHHHHhhh-cccccceeEeeeecccccc
Q 044627 185 NSEDLVGVDSHIQRINSLLCI----------GLPDFRMVRPWDMHGIAKTDIARAILNQI-SSQFEGRSFMANVREESKR 253 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~wv~~~~~~~~~ 253 (524)
.-++++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+++++.. ...| +.+. .......
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~-~~~l~~~ 85 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-SSDLVSK 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEE-CCSSCCS
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEE-hHHHHhh
Confidence 345688988888888776531 11234678999999999999999999976 2222 1122 1000000
Q ss_pred --cCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh-------------hHHHHhCC---CCCCC
Q 044627 254 --VELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG-------------HSEYLTGG---LSRFG 315 (524)
Q Consensus 254 --~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~---~~~~~ 315 (524)
.......+.+ +...-..++.+|+||+++... ....++.. +....
T Consensus 86 ~~g~~~~~~~~l------------------f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 86 WLGESEKLVKNL------------------FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp SCCSCHHHHHHH------------------HHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred hhhHHHHHHHHH------------------HHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 0001111111 111123567899999997541 11222221 11112
Q ss_pred CCcEEEEecCChhhhhh---cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC-hHHHHHHHH
Q 044627 316 HGSRVIVTTRDKKVLDK---YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS-SLALNVLRS 390 (524)
Q Consensus 316 ~gs~IIiTTR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~~ 390 (524)
.+..||.||..+..... -.....+.++..+.++-.+++..+....... ........|++.+.|. +-.|..+..
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45556666654322111 1345678999999999999998765332211 1234567888888887 444665544
No 51
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.44 E-value=4.2e-06 Score=81.86 Aligned_cols=176 Identities=18% Similarity=0.176 Sum_probs=100.4
Q ss_pred CCCCccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccc
Q 044627 185 NSEDLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKR 253 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (524)
.-+.++|.+..++.|.+.+.. +-...+.|.|+|++|+|||+||+.+++.....| +.+.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~-------- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK-------- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC--------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE--------
Confidence 345699999999888877653 123456789999999999999999999765322 1221
Q ss_pred cCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh----------------hHHHHhCCCCC--CC
Q 044627 254 VELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG----------------HSEYLTGGLSR--FG 315 (524)
Q Consensus 254 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~--~~ 315 (524)
...+. ....+... ......+.......+.+|+||+++... ....++..+.. ..
T Consensus 82 --~~~l~----~~~~g~~~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 82 --GPELL----TMWFGESE---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp --HHHHH----HHHHTTCT---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred --hHHHH----hhhcCchH---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 11222 22222211 111222233334567999999997421 01222222111 12
Q ss_pred CCcEEEEecCChhhhhh--c---CCCeEEEcCCCCHHHHHHHHHHhhhcCCC-CCccHHHHHHHHHHHhcCChHH
Q 044627 316 HGSRVIVTTRDKKVLDK--Y---GVDYVYKVEGFNYRESLEIFCYYAFRQNH-CPGDLLVLSDNVVDYANGSSLA 384 (524)
Q Consensus 316 ~gs~IIiTTR~~~~~~~--~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~PLa 384 (524)
.+..||.||..+..+.. . .....+.++..+.++-.+++......... ...+ ...++..+.|.|-+
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 35667777765532211 1 24567899999999988888776533221 1112 23555667776654
No 52
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.43 E-value=9e-07 Score=79.42 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=41.8
Q ss_pred CCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 185 NSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
....++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457999999999999998753 3456789999999999999999997644
No 53
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.43 E-value=5.6e-06 Score=84.07 Aligned_cols=185 Identities=17% Similarity=0.067 Sum_probs=102.0
Q ss_pred CCCCCCccchhhhHHhhhhhhhc----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccccc
Q 044627 183 FGNSEDLVGVDSHIQRINSLLCI----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESK 252 (524)
Q Consensus 183 ~~~~~~~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~ 252 (524)
+..-..++|.+..++.|...+.. .....+.|.|+|.+|+|||+||+.+++.....| +.+. .....
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~---~~v~-~~~l~- 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF---FNIS-AASLT- 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE---EEEC-SCCC--
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE---EEee-HHHhh-
Confidence 34456799999999999887732 012246789999999999999999998764332 1221 10000
Q ss_pred ccCHHHHHHHHHHHHhCCCCcccCCchHHHHH-HhccCCeEEEecCCCChh-------------hHHHHhCCC----CCC
Q 044627 253 RVELEHLRDQILSQILGENIIKTSIPPRYINK-RLQQMKVCIILDNVDKFG-------------HSEYLTGGL----SRF 314 (524)
Q Consensus 253 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~-~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~----~~~ 314 (524)
.... +. .......+.. .....+.+|+||+++... ....++..+ ...
T Consensus 186 ----~~~~--------g~----~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 186 ----SKYV--------GE----GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred ----cccc--------ch----HHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 0000 00 0000111111 123456799999996440 011221111 111
Q ss_pred CCCcEEEEecCChhhhhh---cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChH-HHHHHHH
Q 044627 315 GHGSRVIVTTRDKKVLDK---YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSL-ALNVLRS 390 (524)
Q Consensus 315 ~~gs~IIiTTR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~~ 390 (524)
.....||.||.....+.. -.....+.+...+.++..+++...+...... -..+....+++.+.|..- +|..+..
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 234556666654322111 1244578899999999999998776432221 123456788888988544 6665544
No 54
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.32 E-value=7.3e-06 Score=85.24 Aligned_cols=150 Identities=17% Similarity=0.126 Sum_probs=83.5
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccc-c----ceeEeeeecccccccCHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQF-E----GRSFMANVREESKRVELEH 258 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-~----~~~wv~~~~~~~~~~~~~~ 258 (524)
...+.+|||+.+++.+...|.... ..-+.|+|++|+|||+||+.+++.+...+ + ..-++. ... +
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~----l~~--~--- 245 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT----LDM--G--- 245 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC----C--------
T ss_pred CCCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE----eeC--C---
Confidence 344679999999999999997632 34567999999999999999999864322 1 122222 100 0
Q ss_pred HHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCChhhhh---h---
Q 044627 259 LRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLD---K--- 332 (524)
Q Consensus 259 l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~---~--- 332 (524)
....+ +........+...-...+.+|++| ...+....|.+.+. ....++|.+|....... .
T Consensus 246 ------~~~~g---~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~a 312 (468)
T 3pxg_A 246 ------TKYRG---EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAA 312 (468)
T ss_dssp ----------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSH
T ss_pred ------ccccc---hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHH
Confidence 00000 001122222333333567899999 23333333444443 12355665555433111 0
Q ss_pred -cCCCeEEEcCCCCHHHHHHHHHHhh
Q 044627 333 -YGVDYVYKVEGFNYRESLEIFCYYA 357 (524)
Q Consensus 333 -~~~~~~~~l~~L~~~ea~~L~~~~~ 357 (524)
..-...+.++.++.++..+++....
T Consensus 313 l~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 313 LERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhCccceeCCCCHHHHHHHHHHHH
Confidence 0112468999999999999998664
No 55
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.24 E-value=1.8e-06 Score=74.74 Aligned_cols=47 Identities=17% Similarity=0.061 Sum_probs=37.1
Q ss_pred CccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 188 DLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 188 ~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.++|+...++++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999998886533334457899999999999999998864
No 56
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.23 E-value=6e-05 Score=74.72 Aligned_cols=258 Identities=12% Similarity=0.127 Sum_probs=134.7
Q ss_pred CCCccchhhhHHhhhhhhhcC---CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHH
Q 044627 186 SEDLVGVDSHIQRINSLLCIG---LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQ 262 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~---~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 262 (524)
-+.++|.+..++.+...+..+ ......++|+|++|+||||||+.++..+...+. ... ..+ ......+. .
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s--g~~--~~~~~~l~-~ 95 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS--GPV--LVKQGDMA-A 95 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE--TTT--CCSHHHHH-H
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe--chH--hcCHHHHH-H
Confidence 356889888888887777542 223467899999999999999999998754321 111 000 00111110 1
Q ss_pred HHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCC--------C----------CCcEEE-
Q 044627 263 ILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRF--------G----------HGSRVI- 321 (524)
Q Consensus 263 ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~--------~----------~gs~II- 321 (524)
+ ...+ .++.++++|++... ...+.+....... + +...++
T Consensus 96 ~-------------------~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 96 I-------------------LTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp H-------------------HHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred H-------------------HHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 1 0111 13446777877532 1222222110000 0 112222
Q ss_pred EecCChhhhhhc--CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHh------c
Q 044627 322 VTTRDKKVLDKY--GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNVLRSSF------Y 393 (524)
Q Consensus 322 iTTR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l------~ 393 (524)
.|++...+.... ...-...+++.+.++-.+++.+.+..... .-..+.+..|++.+.|.|-.+..+...+ .
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~ 233 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVV 233 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 344433222111 12345789999999999999877633221 1235668899999999997544332221 1
Q ss_pred C---CCHHHHHHHHhcCCCCCCccHHHHHHHhHhcCChHHHHHHhhccc-ccC-CCCHHHHHHHHhhc-cchhHhHH-HH
Q 044627 394 R---KSKQHWENALHNPKQISDPDIHDMLKISYDELNYKEKDLFLDIAC-FFN-GEGRDYVKIILNNR-YLVHYGLN-IL 466 (524)
Q Consensus 394 ~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~-f~~-~~~~~~l~~l~~~~-~~~~~~l~-~L 466 (524)
+ -+.+..+.++..+.. .-..|+...+.++..++- |.. +...+.+....... ...++..+ .|
T Consensus 234 ~~~~It~~~v~~al~~~~~------------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l 301 (334)
T 1in4_A 234 KADRINTDIVLKTMEVLNI------------DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYL 301 (334)
T ss_dssp TCSSBCHHHHHHHHHHHTC------------CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHH
T ss_pred CCCCcCHHHHHHHHHHhCC------------CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHH
Confidence 1 133333333333211 112455555555544432 322 25566666665544 22222222 89
Q ss_pred hhCCceEEe-CCeEEccHHH
Q 044627 467 AGKALITIS-NNKLQMRDLL 485 (524)
Q Consensus 467 ~~~sLi~~~-~~~~~mH~lv 485 (524)
...++|+.. .|++-...-.
T Consensus 302 ~~~g~i~~~~~gr~~~~~~~ 321 (334)
T 1in4_A 302 LQAGFLARTPRGRIVTEKAY 321 (334)
T ss_dssp HHTTSEEEETTEEEECHHHH
T ss_pred HHcCCeecccccHHhhHHHH
Confidence 999999988 6776554333
No 57
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.22 E-value=3e-06 Score=81.25 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=86.5
Q ss_pred CCCCCccchhhhHHhhhhhhhc----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccc
Q 044627 184 GNSEDLVGVDSHIQRINSLLCI----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKR 253 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (524)
.....++|.+..++.+.+.+.. +....+.+.|+|++|+|||+||+.+++.....|- .+. ......
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~---~v~-~~~~~~- 82 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF---SMG-GSSFIE- 82 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC---CCC-SCTTTT-
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE---Eec-hHHHHH-
Confidence 3456799999998888876642 1112345789999999999999999997654331 111 000000
Q ss_pred cCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh-----------------hHHHHhCCCCCCC-
Q 044627 254 VELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG-----------------HSEYLTGGLSRFG- 315 (524)
Q Consensus 254 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~- 315 (524)
...+.. .......+.......+.+|+||+++... .+..++..+....
T Consensus 83 ------------~~~~~~---~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 83 ------------MFVGLG---ASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp ------------SCSSSC---SSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred ------------hhcchH---HHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 000111 1111222333334567899999995431 1223333332221
Q ss_pred --CCcEEEEecCChhhhh-----hcCCCeEEEcCCCCHHHHHHHHHHhh
Q 044627 316 --HGSRVIVTTRDKKVLD-----KYGVDYVYKVEGFNYRESLEIFCYYA 357 (524)
Q Consensus 316 --~gs~IIiTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~ 357 (524)
....||.||..+..+. .......+.++.++.++-.+++....
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 2245667776553221 11234567888889888888887665
No 58
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.17 E-value=7.1e-06 Score=85.48 Aligned_cols=180 Identities=18% Similarity=0.158 Sum_probs=100.7
Q ss_pred CCccchhhhHHhhhhhhhcC-----------CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccC
Q 044627 187 EDLVGVDSHIQRINSLLCIG-----------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVE 255 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (524)
..++|.+..+++|.+.+... ....+.|.|+|++|+|||+||+++++.....| +.+. ..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~vn-~~------- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GP------- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEEE-HH-------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEEE-ch-------
Confidence 46899999999998887642 33456789999999999999999988764322 1222 11
Q ss_pred HHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh-------------hhHHHHhCCCC--CCCCCcEE
Q 044627 256 LEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF-------------GHSEYLTGGLS--RFGHGSRV 320 (524)
Q Consensus 256 ~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~-------------~~~~~l~~~~~--~~~~gs~I 320 (524)
.+. ..+.+. ........+.....+++.+|+||+++.. .....|+..+. ....+..|
T Consensus 273 --~l~----~~~~g~---~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 --EIM----SKLAGE---SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp --HHH----TSCTTH---HHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred --Hhh----hhhcch---hHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 110 000000 0001112223333456789999999421 11122222111 11235566
Q ss_pred EEecCChhh-----hhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC-hHHHHHHH
Q 044627 321 IVTTRDKKV-----LDKYGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGS-SLALNVLR 389 (524)
Q Consensus 321 IiTTR~~~~-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~ 389 (524)
|.||..+.. .........+.+...+.++-.++|..++....... ......++..+.|+ +-.|..+.
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~---~~~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT---TCCHHHHHHTCTTCCHHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc---hhhHHHHHHHccCCcHHHHHHHH
Confidence 667765432 11123456789999999999999987763322111 11135566677764 54555443
No 59
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=4.6e-05 Score=75.75 Aligned_cols=179 Identities=12% Similarity=0.138 Sum_probs=102.4
Q ss_pred CCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc-ccc-eeEeeeecccccccCHHHHHHHH
Q 044627 186 SEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ-FEG-RSFMANVREESKRVELEHLRDQI 263 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~-~~wv~~~~~~~~~~~~~~l~~~l 263 (524)
-..++|.+..++.|...+..+. .+.+.++|++|+||||+|+.+++.+... +.. +.-+. .+...+...+.. .
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~----~~~~~~~~~ir~-~ 96 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN----ASDDRGIDVVRN-Q 96 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC----TTSCCSHHHHHT-H
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc----CcccccHHHHHH-H
Confidence 3558899999999988887643 3338899999999999999999976432 211 11111 111122222221 1
Q ss_pred HHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCChh-hhhh-cCCCeEE
Q 044627 264 LSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDKK-VLDK-YGVDYVY 339 (524)
Q Consensus 264 l~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~-~~~~-~~~~~~~ 339 (524)
...+..... .+.+.+-++|+|+++.. +..+.+...+......+.+|++|.... +... ......+
T Consensus 97 i~~~~~~~~------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 97 IKDFASTRQ------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HHHHHHBCC------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHHHHhhcc------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 111110000 01234678999999643 333334333332335667777765432 1111 1223578
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHH
Q 044627 340 KVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLAL 385 (524)
Q Consensus 340 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 385 (524)
.+.+++.++..+.+...+-..... -..+....+++.++|.+--+
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 999999999988887665322211 12456778889999988743
No 60
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.14 E-value=1.4e-05 Score=89.58 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=42.1
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
...+.+|||+.++..+...|.... .+.+.|+|.+|+|||+||+.+++.+..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 445679999999999999997633 345679999999999999999997643
No 61
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=1.3e-05 Score=78.30 Aligned_cols=145 Identities=7% Similarity=0.032 Sum_probs=88.7
Q ss_pred chhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh---cccccceeEeeeeccccc-ccCHHHHHHHHHHH
Q 044627 191 GVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI---SSQFEGRSFMANVREESK-RVELEHLRDQILSQ 266 (524)
Q Consensus 191 GR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~---~~~f~~~~wv~~~~~~~~-~~~~~~l~~~ll~~ 266 (524)
|-+..++.|.+.+..+. .+...++|++|+||||+|..+++.. ...++....+. .+. ..+...+ +.+...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~----~~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID----PEGENIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC----CSSSCBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc----CCcCCCCHHHH-HHHHHH
Confidence 34556677777776543 6789999999999999999998852 11233444444 221 2233332 223333
Q ss_pred HhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCCCCCCcEEEEecCCh-hhhhhcCCCeEEEcCC
Q 044627 267 ILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSRFGHGSRVIVTTRDK-KVLDKYGVDYVYKVEG 343 (524)
Q Consensus 267 l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~~~~~~~~~~l~~ 343 (524)
....+ ..+++-++|+|+++.. ...+.|+..+....+.+.+|++|.++ .+....... .+++.+
T Consensus 74 ~~~~p--------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 74 LNYSP--------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp HTSCC--------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred Hhhcc--------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 32111 0235678999999643 34555555554444677777766544 344433334 899999
Q ss_pred CCHHHHHHHHHHhh
Q 044627 344 FNYRESLEIFCYYA 357 (524)
Q Consensus 344 L~~~ea~~L~~~~~ 357 (524)
++.++..+.+....
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999988765
No 62
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=3.7e-05 Score=77.24 Aligned_cols=173 Identities=19% Similarity=0.221 Sum_probs=100.6
Q ss_pred CCCCccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccc-cc
Q 044627 185 NSEDLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREE-SK 252 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~-~~ 252 (524)
.-+++.|.+..+++|.+.+.. +-..++-|.++|++|+|||.||+++++.....|- .+. .... +.
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~---~v~-~s~l~sk 221 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI---RVS-GAELVQK 221 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE---EEE-GGGGSCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce---EEE-hHHhhcc
Confidence 346688999999888776532 2234677899999999999999999998765542 222 1101 10
Q ss_pred cc-CHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh----------------hHHHHhCCCCCC-
Q 044627 253 RV-ELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG----------------HSEYLTGGLSRF- 314 (524)
Q Consensus 253 ~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 314 (524)
.. ......+.++ ...-...+++|++|+++... .+..++..+..+
T Consensus 222 ~vGese~~vr~lF------------------~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 222 YIGEGSRMVRELF------------------VMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp STTHHHHHHHHHH------------------HHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred ccchHHHHHHHHH------------------HHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 00 0111111111 11224568999999996321 122233222211
Q ss_pred -CCCcEEEEecCChhhh-----hhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCC-CCccHHHHHHHHHHHhcCChH
Q 044627 315 -GHGSRVIVTTRDKKVL-----DKYGVDYVYKVEGFNYRESLEIFCYYAFRQNH-CPGDLLVLSDNVVDYANGSSL 383 (524)
Q Consensus 315 -~~gs~IIiTTR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~PL 383 (524)
..+..||.||..+..+ ..-.....+.++..+.++-.++|..+...... ...+ ...+++.+.|+--
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~SG 355 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCSG 355 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCCH
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCCH
Confidence 2345567777654332 21235678999999999999999876533221 1112 4567778877643
No 63
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.11 E-value=5.3e-06 Score=74.43 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=61.5
Q ss_pred hhhhHHhhhhhhhcCC-CCceEEEeeccccchHHHHHHHHHhhhcc-cccceeEeeeecccccccCHHHHHHHHHHHHhC
Q 044627 192 VDSHIQRINSLLCIGL-PDFRMVRPWDMHGIAKTDIARAILNQISS-QFEGRSFMANVREESKRVELEHLRDQILSQILG 269 (524)
Q Consensus 192 R~~el~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~ 269 (524)
....++.+..++..-. .....+.|+|++|+||||||+.+++.+.. .-..+.++. ...+...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD----------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHhcC
Confidence 4444555555554311 23568899999999999999999997752 222334443 23333333333221
Q ss_pred CCCcccCCchHHHHHHhccCCeEEEecCCCC--hhh--HHHHhCCCCC-CCCCcEEEEecCC
Q 044627 270 ENIIKTSIPPRYINKRLQQMKVCIILDNVDK--FGH--SEYLTGGLSR-FGHGSRVIVTTRD 326 (524)
Q Consensus 270 ~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~--~~~--~~~l~~~~~~-~~~gs~IIiTTR~ 326 (524)
.. . . .+.+.+. +.-+||||+++. .+. .+.+...+.. ...|..+|+||..
T Consensus 89 ~~---~---~-~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GK---D---T-KFLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TC---C---S-HHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ch---H---H-HHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11 1 1 2222222 456899999962 221 1122111111 1246778888874
No 64
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.10 E-value=1.9e-05 Score=77.17 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=39.0
Q ss_pred CCccchhhhHHhhhhhhhc------------CCCCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 187 EDLVGVDSHIQRINSLLCI------------GLPDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~------------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
..++|.+..++.+...+.. .......+.|+|++|+|||+||+.+++....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4588999999888877754 0122456889999999999999999997743
No 65
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=3.4e-05 Score=78.57 Aligned_cols=171 Identities=18% Similarity=0.175 Sum_probs=98.8
Q ss_pred CCCccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccc-ccc
Q 044627 186 SEDLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREE-SKR 253 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~-~~~ 253 (524)
-.++.|.+..+++|.+.+.. +-...+-|.++|++|+|||.||+++++.....|- .+. .... +..
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi---~vs-~s~L~sk~ 283 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI---RVI-GSELVQKY 283 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE---EEE-GGGGCCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE---EEE-hHHhhccc
Confidence 35789999999988775432 2245778999999999999999999998765532 222 1111 110
Q ss_pred cC-HHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh----------------hHHHHhCCCCCC--
Q 044627 254 VE-LEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG----------------HSEYLTGGLSRF-- 314 (524)
Q Consensus 254 ~~-~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~-- 314 (524)
.+ .....+.+ ....-...+++|++|+++... .+..++..+..+
T Consensus 284 vGesek~ir~l------------------F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 284 VGEGARMVREL------------------FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp SSHHHHHHHHH------------------HHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHHHHHH------------------HHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 01 11111111 112224568999999996321 111222222111
Q ss_pred CCCcEEEEecCChhhhh-----hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCC-CCccHHHHHHHHHHHhcCCh
Q 044627 315 GHGSRVIVTTRDKKVLD-----KYGVDYVYKVEGFNYRESLEIFCYYAFRQNH-CPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 315 ~~gs~IIiTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 382 (524)
..+..||.||..+..+. .-.....+.++..+.++-.++|..+...-.. ..-+ ...|++.+.|+-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 23445666776543321 1135678999999999999999876533221 1112 356777887764
No 66
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.07 E-value=3.9e-05 Score=72.95 Aligned_cols=181 Identities=18% Similarity=0.113 Sum_probs=93.7
Q ss_pred CCCCCccchhhhHHhhhhhhhc---C-------CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccc
Q 044627 184 GNSEDLVGVDSHIQRINSLLCI---G-------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKR 253 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~---~-------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (524)
..-+.++|.+..++++...+.. . ....+-+.|+|++|+||||||+.+++.....| +.+. .......
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~~ 84 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVEM 84 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTTS
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHHH
Confidence 3446789999888887765432 1 11244688999999999999999998764332 2222 1000000
Q ss_pred cCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh----------------hhHHHHhCCCCC--CC
Q 044627 254 VELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF----------------GHSEYLTGGLSR--FG 315 (524)
Q Consensus 254 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~--~~ 315 (524)
..+.. .......+.......+.++++|+++.. ..+..++..+.. ..
T Consensus 85 -------------~~~~~---~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 85 -------------FVGVG---ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp -------------CCCCC---HHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred -------------hhhhh---HHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 00000 000011122222345679999998321 112222221111 12
Q ss_pred CCcEEEEecCChhhhh-h----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcC-ChHHHHH
Q 044627 316 HGSRVIVTTRDKKVLD-K----YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANG-SSLALNV 387 (524)
Q Consensus 316 ~gs~IIiTTR~~~~~~-~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLal~~ 387 (524)
.+..||.||..+.... . ......+.++..+.++-.+++..+.......+. .....++..+.| .+--|..
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHHH
Confidence 3456777776543221 1 123467888888888888888766432211111 113446666777 6654543
No 67
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=1.5e-05 Score=81.25 Aligned_cols=173 Identities=19% Similarity=0.234 Sum_probs=99.8
Q ss_pred CCCCCccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccc-c
Q 044627 184 GNSEDLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREE-S 251 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~-~ 251 (524)
..-.++.|-+..+++|.+.+.. +-..++-|.++|++|+|||.||+++++.....|- .+. .... +
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~---~v~-~s~l~s 253 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI---FSP-ASGIVD 253 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE---EEE-GGGTCC
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-hhhhcc
Confidence 3346788999999888776532 2234678999999999999999999998765432 222 1111 1
Q ss_pred cccC-HHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh----------------hHHHHhCCCCCC
Q 044627 252 KRVE-LEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG----------------HSEYLTGGLSRF 314 (524)
Q Consensus 252 ~~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~ 314 (524)
...+ .....+.+ ....-...+++|++|+++... .+..|+..+..+
T Consensus 254 k~~Gese~~ir~~------------------F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 254 KYIGESARIIREM------------------FAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp SSSSHHHHHHHHH------------------HHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred ccchHHHHHHHHH------------------HHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 1001 11111111 111224568999999996321 122233222211
Q ss_pred --CCCcEEEEecCChhhhhhc-----CCCeEEEcCCCCHHHHHHHHHHhhhcCC-CCCccHHHHHHHHHHHhcCCh
Q 044627 315 --GHGSRVIVTTRDKKVLDKY-----GVDYVYKVEGFNYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 315 --~~gs~IIiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 382 (524)
..+..||.||..+..+... .....+.++..+.++-.++|..+..... ....+ ...+++.+.|+-
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 2355677777655433221 1345788988888888888887654322 11112 356677777764
No 68
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.03 E-value=1.6e-05 Score=75.95 Aligned_cols=49 Identities=18% Similarity=0.089 Sum_probs=36.0
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+.++|.+..+.++.+.+..-......|.|+|.+|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4589999999988877754222335678999999999999999998654
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.03 E-value=4.3e-05 Score=84.50 Aligned_cols=151 Identities=18% Similarity=0.220 Sum_probs=86.9
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc------ccceeEeeeecccc----cc
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ------FEGRSFMANVREES----KR 253 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~wv~~~~~~~----~~ 253 (524)
...+.++||+.+++.+.+.|... ....+.|+|.+|+|||+||+.+++.+... ....+|..+..... ..
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 260 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYR 260 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCS
T ss_pred CCCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhcccccc
Confidence 34567999999999999999764 24457899999999999999999876332 12223322111100 00
Q ss_pred cCHHHHHHHHHHHHhCCCCcccCCchHHHHHHh-ccCCeEEEecCCCCh--------hh---HHHHhCCCCCCCCCcEEE
Q 044627 254 VELEHLRDQILSQILGENIIKTSIPPRYINKRL-QQMKVCIILDNVDKF--------GH---SEYLTGGLSRFGHGSRVI 321 (524)
Q Consensus 254 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~--------~~---~~~l~~~~~~~~~gs~II 321 (524)
....... ..+.+.+ ..++.+|++|+++.. .. ...+...+. ..+..+|
T Consensus 261 g~~e~~l-------------------~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I 319 (758)
T 1r6b_X 261 GDFEKRF-------------------KALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVI 319 (758)
T ss_dssp SCHHHHH-------------------HHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEE
T ss_pred chHHHHH-------------------HHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEE
Confidence 0111111 1112222 235789999999754 12 222333333 2345566
Q ss_pred EecCChhhhhhc-------CCCeEEEcCCCCHHHHHHHHHHhh
Q 044627 322 VTTRDKKVLDKY-------GVDYVYKVEGFNYRESLEIFCYYA 357 (524)
Q Consensus 322 iTTR~~~~~~~~-------~~~~~~~l~~L~~~ea~~L~~~~~ 357 (524)
.+|..+...... .....+.++.++.++..+++....
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 666543321110 112368999999999988887554
No 70
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.03 E-value=2.5e-05 Score=76.39 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=39.5
Q ss_pred CCccchhhhHHhhhhhhhcCC-------CCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 187 EDLVGVDSHIQRINSLLCIGL-------PDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
..++|.+..++.+...+.... .....+.|+|++|+|||++|+.+++....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 358899999988888776521 12357899999999999999999997644
No 71
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.01 E-value=6.5e-05 Score=73.40 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=38.9
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
+.++|++..+.++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999999988887633334567899999999999999998854
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.00 E-value=4.8e-05 Score=84.11 Aligned_cols=150 Identities=17% Similarity=0.122 Sum_probs=84.7
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccc-----cceeEeeeecccccccCHHH
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQF-----EGRSFMANVREESKRVELEH 258 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~wv~~~~~~~~~~~~~~ 258 (524)
...+.+|||+.+++.+...|.... ..-+.|+|++|+|||++|+.+++.+.... ...-++. .. .
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~----~~----~-- 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT----LD----M-- 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC----C--------
T ss_pred CCCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE----ec----c--
Confidence 344679999999999999997632 34578999999999999999999863321 1111221 10 0
Q ss_pred HHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCChhhhhhc-----
Q 044627 259 LRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVLDKY----- 333 (524)
Q Consensus 259 l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~----- 333 (524)
.....+ +........+.......+.+|++| ...+....+.+.+. ....++|.||.........
T Consensus 245 -----g~~~~G---~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~a 312 (758)
T 3pxi_A 245 -----GTKYRG---EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAA 312 (758)
T ss_dssp ----------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSH
T ss_pred -----cccccc---hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHH
Confidence 000000 112222333333444678899999 23333334444443 2345666666544311100
Q ss_pred --CCCeEEEcCCCCHHHHHHHHHHhh
Q 044627 334 --GVDYVYKVEGFNYRESLEIFCYYA 357 (524)
Q Consensus 334 --~~~~~~~l~~L~~~ea~~L~~~~~ 357 (524)
.....+.++.++.++..+++....
T Consensus 313 l~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 313 LERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 012568999999999999998654
No 73
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=1.4e-05 Score=81.38 Aligned_cols=54 Identities=26% Similarity=0.348 Sum_probs=42.4
Q ss_pred CCCCccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 185 NSEDLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
.-.++.|.+...++|.+.+.. +-...+-|.++|++|+|||+||+++++.....|
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 345788999999988776532 223467799999999999999999999876543
No 74
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=2e-05 Score=80.34 Aligned_cols=175 Identities=16% Similarity=0.144 Sum_probs=100.1
Q ss_pred cCCCCCCccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccc
Q 044627 182 HFGNSEDLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREE 250 (524)
Q Consensus 182 ~~~~~~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~ 250 (524)
|...-.++.|-+..+++|.+.+.. +-..++-|.++|++|+|||.||+++++.....|- .+. ....
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~---~v~-~s~l 251 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL---KLA-APQL 251 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE---EEE-GGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE---EEe-hhhh
Confidence 334456789999999988775422 2234678999999999999999999998765432 122 1111
Q ss_pred -ccccC-HHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh-------h---------hHHHHhCCCC
Q 044627 251 -SKRVE-LEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF-------G---------HSEYLTGGLS 312 (524)
Q Consensus 251 -~~~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~-------~---------~~~~l~~~~~ 312 (524)
+...+ .....+.++ ...-...+++|++|+++.. . .+..++..+.
T Consensus 252 ~~~~vGese~~ir~lF------------------~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAF------------------ALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp CSSCSSHHHHHHHHHH------------------HHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred hhcccchHHHHHHHHH------------------HHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 11101 111112211 1112346899999999521 0 1222333333
Q ss_pred CCC--CCcEEEEecCChhhhhhc-----CCCeEEEcCCCCHHHHHHHHHHhhhcCC-CCCccHHHHHHHHHHHhcCCh
Q 044627 313 RFG--HGSRVIVTTRDKKVLDKY-----GVDYVYKVEGFNYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 313 ~~~--~gs~IIiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 382 (524)
.+. .+..||.||..+..+... .....+.++..+.++-.++|..+...-. ...-+ ...|++.+.|+-
T Consensus 314 g~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 314 GFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp TSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred ccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 222 344566677665433221 2346789999999888888876653322 11112 456777787754
No 75
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.97 E-value=2.3e-06 Score=73.84 Aligned_cols=49 Identities=18% Similarity=0.048 Sum_probs=35.8
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
-.++|++..++++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3589999999999888765222334578999999999999999887654
No 76
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.91 E-value=4.1e-05 Score=69.82 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=40.5
Q ss_pred CCCccchh----hhHHhhhhhhhcCCCC--ceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 186 SEDLVGVD----SHIQRINSLLCIGLPD--FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 186 ~~~~vGR~----~el~~l~~~L~~~~~~--~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.++|++.+ ..++.+.+++...... .+.+.|+|++|+|||+||+.+++........++|+.
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45577644 3444555555543221 268889999999999999999998765544556665
No 77
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.86 E-value=0.00017 Score=74.59 Aligned_cols=173 Identities=14% Similarity=0.139 Sum_probs=95.6
Q ss_pred CCCccchhhhHHhhhhhhhc--C--------CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccc-c
Q 044627 186 SEDLVGVDSHIQRINSLLCI--G--------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKR-V 254 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~--~--------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~-~ 254 (524)
..+++|.+..++++.+.+.. . ....+-|.|+|++|+|||+||+.++......| +.+. ....... .
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~~~~~ 90 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFVELFV 90 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTTTCCT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHHHHHh
Confidence 35688998888777665432 0 11234588999999999999999999764332 1222 1111000 0
Q ss_pred CHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh----------------hhHHHHhCCCCCC--CC
Q 044627 255 ELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF----------------GHSEYLTGGLSRF--GH 316 (524)
Q Consensus 255 ~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~ 316 (524)
+.. .......+.....+.+.+|+||+++.. ..+..++..+..+ ..
T Consensus 91 g~~-----------------~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 91 GVG-----------------AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp THH-----------------HHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred ccc-----------------HHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 000 000112233334567899999999542 1123333222111 23
Q ss_pred CcEEEEecCChhhhhh--c---CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh
Q 044627 317 GSRVIVTTRDKKVLDK--Y---GVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 317 gs~IIiTTR~~~~~~~--~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (524)
+..||.||..+..+.. . .....+.++..+.++-.+++..+........ +. ....+++.+.|+.
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~-~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAE-DV--NLEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCT-TC--CHHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcc-hh--hHHHHHHhcCCCc
Confidence 5567777776543321 1 2445788999888888888876653322111 11 1345777888876
No 78
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=5.5e-05 Score=76.31 Aligned_cols=173 Identities=22% Similarity=0.221 Sum_probs=98.2
Q ss_pred CCCCCccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccc-c
Q 044627 184 GNSEDLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREE-S 251 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~-~ 251 (524)
..-.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....|- .+. .... +
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi---~v~-~s~l~s 254 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL---RIV-GSELIQ 254 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE---EEE-SGGGCC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE---EEE-HHHhhh
Confidence 3346788999999888775532 2234678999999999999999999998765542 111 1111 1
Q ss_pred ccc-CHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh----------------hHHHHhCCCCC-
Q 044627 252 KRV-ELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG----------------HSEYLTGGLSR- 313 (524)
Q Consensus 252 ~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~- 313 (524)
... ......+.++ ...-...+++|++|+++... .+..++..+..
T Consensus 255 k~vGesek~ir~lF------------------~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 255 KYLGDGPRLCRQIF------------------KVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp SSSSHHHHHHHHHH------------------HHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred ccCchHHHHHHHHH------------------HHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 100 1111112211 11223568999999986320 12222222211
Q ss_pred -CCCCcEEEEecCChhhhhhc-----CCCeEEEcCCCCHHHHHHHHHHhhhcCCC-CCccHHHHHHHHHHHhcCCh
Q 044627 314 -FGHGSRVIVTTRDKKVLDKY-----GVDYVYKVEGFNYRESLEIFCYYAFRQNH-CPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 314 -~~~gs~IIiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 382 (524)
...+..||.||..+..+... .....+.++..+.++-.++|..+...... ...+ ...|++.+.|+-
T Consensus 317 ~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 317 DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 12345667777655443321 23456788888888888888876533221 1112 456677777764
No 79
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.83 E-value=0.00024 Score=73.47 Aligned_cols=50 Identities=22% Similarity=0.162 Sum_probs=38.7
Q ss_pred CCCccchhhhHHhhhhhhh---cCCCCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 186 SEDLVGVDSHIQRINSLLC---IGLPDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~---~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.+.++|.+..++.+..++. .+....+-+.++|++|+|||+||+.+++.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4679999998886655443 3333346788999999999999999998764
No 80
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.81 E-value=0.00071 Score=71.51 Aligned_cols=155 Identities=17% Similarity=0.175 Sum_probs=77.6
Q ss_pred CccchhhhHHhhhhhhhc----CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHH
Q 044627 188 DLVGVDSHIQRINSLLCI----GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQI 263 (524)
Q Consensus 188 ~~vGR~~el~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 263 (524)
..+|-+...+.+...+.. .......+.|+|++|+||||||+.++......|-.+. +.. . .....+....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~-~~~---~---~~~~~~~g~~ 154 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS-LGG---V---RDESEIRGHR 154 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEEC-CCC-----------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEE-ecc---c---chhhhhhhHH
Confidence 467877777666554321 1123568999999999999999999997754432111 110 0 0111111000
Q ss_pred HHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChhh------HHHHhCCCCCCC---------------CCcEEEE
Q 044627 264 LSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFGH------SEYLTGGLSRFG---------------HGSRVIV 322 (524)
Q Consensus 264 l~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~---------------~gs~IIi 322 (524)
...++ . ...............+-+++||+++.... ...++..+.... ....+|.
T Consensus 155 ~~~ig-~----~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ 229 (543)
T 3m6a_A 155 RTYVG-A----MPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIA 229 (543)
T ss_dssp --------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEE
T ss_pred HHHhc-c----CchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEe
Confidence 00000 0 01111111122222344888999964321 122332221100 2346666
Q ss_pred ecCChh-----hhhhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 044627 323 TTRDKK-----VLDKYGVDYVYKVEGFNYRESLEIFCYYA 357 (524)
Q Consensus 323 TTR~~~-----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 357 (524)
||.... +...+ ..+.+.+++.++-.+++..+.
T Consensus 230 ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 230 TANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp ECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred ccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 666432 22222 478999999999998887764
No 81
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.69 E-value=0.00028 Score=68.48 Aligned_cols=29 Identities=10% Similarity=0.175 Sum_probs=24.9
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
.++.+.|+|++|+|||+||+.+++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35688899999999999999999988543
No 82
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.66 E-value=0.00012 Score=80.25 Aligned_cols=172 Identities=19% Similarity=0.205 Sum_probs=96.8
Q ss_pred CCccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccC
Q 044627 187 EDLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVE 255 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (524)
+++.|.+..+++|.+.+.. +...++-|.++|++|+|||+||+++++.....| +.+. ..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~-~~------- 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GP------- 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEE-HH-------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEE-hH-------
Confidence 4678899988888776532 113467899999999999999999999876543 2222 10
Q ss_pred HHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh-------------hHHHHhCCCCCC--CCCcEE
Q 044627 256 LEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG-------------HSEYLTGGLSRF--GHGSRV 320 (524)
Q Consensus 256 ~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~gs~I 320 (524)
+ +.....+ +........+.......+.+|+||+++... .+..|+..+... ..+..|
T Consensus 273 --~----l~sk~~g---ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 273 --E----IMSKLAG---ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp --H----HHSSCTT---HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred --H----hhcccch---HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 0 0000000 001111122223334678999999996321 122233222111 123445
Q ss_pred EEecCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCC-CCCccHHHHHHHHHHHhcCCh
Q 044627 321 IVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQN-HCPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 321 IiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 382 (524)
|.||..+..+.. ......++++..+.++-.++|..+..... ....+ ...+++.+.|+-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 666655432211 12456889999999999999887653221 11112 456777787764
No 83
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.62 E-value=8.4e-05 Score=60.30 Aligned_cols=71 Identities=6% Similarity=0.038 Sum_probs=52.9
Q ss_pred CcccEEecCcccccCCchHHHHHHHHHhCCCceEecCCcCCCCcchHHHHHhhhhcceEEEEeecCccCchhhHHHHHHH
Q 044627 11 RKYDVFLSFRGEDTRNNFTSHLFAAFCREKIKAFIDEQLKKGDDISSALLNAIEESKISVIIFSKGYASSTWCLEELVKI 90 (524)
Q Consensus 11 ~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~ 90 (524)
.+|.+||||+.+| . ...|...|...|+... | ..|+.|+.+|++.++...+|+||..|+..|
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 4799999999998 2 4455555544455332 2 678999999999999999999999999876
Q ss_pred HHhHhhcCCeeEee
Q 044627 91 LECKKRKGQTVIPV 104 (524)
Q Consensus 91 ~~~~~~~~~~v~Pi 104 (524)
.+ .+.+++-|
T Consensus 64 ~~----~gkpIigV 73 (111)
T 1eiw_A 64 RK----SSKPIITV 73 (111)
T ss_dssp TT----TTCCEEEE
T ss_pred HH----cCCCEEEE
Confidence 64 33445544
No 84
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.60 E-value=3.3e-05 Score=66.95 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=27.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...++|+|..|+|||||++.++......-..++++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 458899999999999999999997654211255555
No 85
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.57 E-value=0.00039 Score=65.76 Aligned_cols=174 Identities=15% Similarity=0.167 Sum_probs=87.8
Q ss_pred CCCCccchhhhHHhhhhhhhc--C--------CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccccccc
Q 044627 185 NSEDLVGVDSHIQRINSLLCI--G--------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRV 254 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~--~--------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (524)
..++++|.+....++.++... . -.-.+-+.|+|++|+||||||+.++..... ..+.+..
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~~-------- 82 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITASG-------- 82 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEH--------
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEeeH--------
Confidence 345688887776666554321 0 011223889999999999999999987652 2223320
Q ss_pred CHHHHHHHHHHHHhCCCCcccCCchHHHHHHh-ccCCeEEEecCCCChh----------------hHHHHhCCCCCC--C
Q 044627 255 ELEHLRDQILSQILGENIIKTSIPPRYINKRL-QQMKVCIILDNVDKFG----------------HSEYLTGGLSRF--G 315 (524)
Q Consensus 255 ~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~ 315 (524)
..+.. ...+ . .......+.+.. ...+.++++|+++... .+..++..+... .
T Consensus 83 --~~~~~----~~~~---~-~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 83 --SDFVE----MFVG---V-GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp --HHHHH----SCTT---H-HHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred --HHHHH----HHhh---H-HHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 00000 0000 0 000011122222 2346899999994221 122232222111 1
Q ss_pred CCcEEEEecCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh
Q 044627 316 HGSRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 316 ~gs~IIiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (524)
....++.||..+..+.. ......+.++..+.++-.+++...+-...... + .....+++.+.|+-
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~--~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-D--VDLALLAKRTPGFV 221 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCT-T--CCHHHHHHTCTTCC
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCc-c--cCHHHHHHHcCCCC
Confidence 23345556666554322 12456789999999888888876542211111 1 11345666676654
No 86
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.52 E-value=0.00036 Score=77.05 Aligned_cols=147 Identities=14% Similarity=0.149 Sum_probs=81.8
Q ss_pred CCccchhhhHHhhhhhhhcCC-------CCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHH
Q 044627 187 EDLVGVDSHIQRINSLLCIGL-------PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHL 259 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 259 (524)
..++|.+..++.+...+.... .....+.++|++|+|||+||+.+++.....-...+.++ +..........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 568999999988888776421 11236899999999999999999997643322233333 11111111000
Q ss_pred HHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCCh--hhHHHHhCCCCC-----------CCCCcEEEEecCC
Q 044627 260 RDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKF--GHSEYLTGGLSR-----------FGHGSRVIVTTRD 326 (524)
Q Consensus 260 ~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~-----------~~~gs~IIiTTR~ 326 (524)
.......++ .....+|+||+++.. +....|+..+.. ...+.+||+||..
T Consensus 568 ---------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 568 ---------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ---------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 001111221 123458999999643 223333321110 1135688888873
Q ss_pred h-----------------hhhhhcCCCeEEEcCCCCHHHHHHHHHHh
Q 044627 327 K-----------------KVLDKYGVDYVYKVEGFNYRESLEIFCYY 356 (524)
Q Consensus 327 ~-----------------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~ 356 (524)
. .+.. .....+.+.+++.++-.+++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHH
Confidence 1 1111 23457889999998888777654
No 87
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.51 E-value=0.00041 Score=66.67 Aligned_cols=175 Identities=14% Similarity=0.131 Sum_probs=89.8
Q ss_pred CCCCCccchhhhHHhhhhhhhcC-C---------CCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccc
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIG-L---------PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKR 253 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~-~---------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (524)
...++++|.+..++++.++...- . .-.+-+.|+|++|+||||||+.++..... ..+.+..
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~~------- 106 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITASG------- 106 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEH-------
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEecH-------
Confidence 34467888888777776544320 0 11223889999999999999999987652 2233320
Q ss_pred cCHHHHHHHHHHHHhCCCCcccCCchHHHHHHh-ccCCeEEEecCCCCh----------------hhHHHHhCCCCCCC-
Q 044627 254 VELEHLRDQILSQILGENIIKTSIPPRYINKRL-QQMKVCIILDNVDKF----------------GHSEYLTGGLSRFG- 315 (524)
Q Consensus 254 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~- 315 (524)
..+... ... . .......+.+.. ...+.++++|+++.. ..+..++..+....
T Consensus 107 ---~~~~~~----~~~---~-~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 107 ---SDFVEM----FVG---V-GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp ---HHHHHS----TTT---H-HHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred ---HHHHHH----Hhh---H-HHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 000000 000 0 000011112222 234689999999421 11223332222111
Q ss_pred -CCcEEEEecCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh
Q 044627 316 -HGSRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 316 -~gs~IIiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (524)
....++.||..+..+.. ......+.++..+.++-.+++...+-...... + .....+++.+.|+.
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~--~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-D--VDLALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCT-T--CCHHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCc-c--cCHHHHHHHcCCCC
Confidence 22345556665544321 13456789999999888888876652211111 1 11345666777755
No 88
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.46 E-value=0.0007 Score=70.40 Aligned_cols=171 Identities=13% Similarity=0.125 Sum_probs=92.5
Q ss_pred CCCCccchhhhHHhhhhhhhc---C-------CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccccccc
Q 044627 185 NSEDLVGVDSHIQRINSLLCI---G-------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRV 254 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~---~-------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (524)
...+++|.+..+.++.+.... . ..-.+-+.|+|++|+|||+||+.++...... .+.+. ........
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~~~~~~ 104 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVEMF 104 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGGGTSSC
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhHHHHhh
Confidence 346789988887777665432 1 0113348999999999999999999876422 22332 11110000
Q ss_pred CHHHHHHHHHHHHhCCCCcccCCchHHHHHHhc----cCCeEEEecCCCCh----------------hhHHHHhCCCCCC
Q 044627 255 ELEHLRDQILSQILGENIIKTSIPPRYINKRLQ----QMKVCIILDNVDKF----------------GHSEYLTGGLSRF 314 (524)
Q Consensus 255 ~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~----~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~ 314 (524)
.. .....+...++ ..+.++++|+++.. ..+..++..+..+
T Consensus 105 -~g-------------------~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 105 -VG-------------------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp -TT-------------------HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred -hh-------------------hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 00 00111222222 23579999999532 1123333222211
Q ss_pred --CCCcEEEEecCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCh
Q 044627 315 --GHGSRVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSS 382 (524)
Q Consensus 315 --~~gs~IIiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (524)
..+..++.||..+..+.. ......+.++..+.++-.+++..++-...... + .....++..+.|+.
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~-d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-D--VDLALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCC-S--STTHHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCCh-H--HHHHHHHHhcCCCC
Confidence 124456667776654321 12345789999999988888877653221111 1 11345667777765
No 89
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.45 E-value=0.0015 Score=62.66 Aligned_cols=150 Identities=16% Similarity=0.115 Sum_probs=79.3
Q ss_pred CCccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccC
Q 044627 187 EDLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVE 255 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (524)
.++.|.+...++|...+.. +-.-.+-++|+|++|+||||||+.++...... .+.+.. ..... ..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~---~i~i~g-~~l~~-~~ 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN---FISVKG-PELLN-MY 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEET-TTTCS-ST
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC---EEEEEc-HHHHh-hh
Confidence 4466666666666543311 00112338999999999999999999876432 333331 11100 00
Q ss_pred HHHHHHHHHHHHhCCCCcccCCchHHHHHHh-ccCCeEEEecCCCChh-------------hHHHHhCCCCCC--CCCcE
Q 044627 256 LEHLRDQILSQILGENIIKTSIPPRYINKRL-QQMKVCIILDNVDKFG-------------HSEYLTGGLSRF--GHGSR 319 (524)
Q Consensus 256 ~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~gs~ 319 (524)
.....+. ...+.+.. ...+.++++|+++... ....+...+..+ ....-
T Consensus 85 ~~~~~~~----------------i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 85 VGESERA----------------VRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp THHHHHH----------------HHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred hhHHHHH----------------HHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE
Confidence 1111111 11111111 3357889999996421 112222222111 12445
Q ss_pred EEEecCChhhhhhc-----CCCeEEEcCCCCHHHHHHHHHHhh
Q 044627 320 VIVTTRDKKVLDKY-----GVDYVYKVEGFNYRESLEIFCYYA 357 (524)
Q Consensus 320 IIiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~L~~~~~ 357 (524)
++.+|..+.++... .....+.++..+.++-.++|....
T Consensus 149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 66677766554321 356788999999999999988765
No 90
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.44 E-value=0.00052 Score=76.02 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=85.7
Q ss_pred CCCccchhhhHHhhhhhhhc-----------CCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccccccc
Q 044627 186 SEDLVGVDSHIQRINSLLCI-----------GLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRV 254 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (524)
-+.++|.+..+++|.+++.. .-.....|.|+|++|+||||||+.++......| +.+. .......
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~- 277 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSK- 277 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSS-
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhh-
Confidence 46799999999999887753 223456789999999999999999998765433 2222 1000000
Q ss_pred CHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCCeEEEecCCCChh----------------hHHHHhCCCCCCCCCc
Q 044627 255 ELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMKVCIILDNVDKFG----------------HSEYLTGGLSRFGHGS 318 (524)
Q Consensus 255 ~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~~~gs 318 (524)
..... .......+.......+.++++|+++... .+-.+..... ...+.
T Consensus 278 ~~g~~---------------~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v 341 (806)
T 1ypw_A 278 LAGES---------------ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHV 341 (806)
T ss_dssp STTHH---------------HHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCC
T ss_pred hhhhH---------------HHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccE
Confidence 00000 0001112222334467899999994210 1112222222 11345
Q ss_pred EEEEecCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhh
Q 044627 319 RVIVTTRDKKVLDK-----YGVDYVYKVEGFNYRESLEIFCYYA 357 (524)
Q Consensus 319 ~IIiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~ 357 (524)
.+|.||..+..+.. ......+.+...+.++-.+++...+
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 56666655422211 1234567888899999999988765
No 91
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.36 E-value=0.00072 Score=68.01 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=23.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
...+.|+|++|+|||+||+.+++.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456889999999999999999997743
No 92
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.19 E-value=0.00063 Score=75.15 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=38.6
Q ss_pred CCccchhhhHHhhhhhhhcCC-------CCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 187 EDLVGVDSHIQRINSLLCIGL-------PDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..++|.+..++.+...+.... .....+.++|++|+|||+||+.+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 468899999988877765311 1234789999999999999999999773
No 93
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.15 E-value=0.0012 Score=73.92 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=39.1
Q ss_pred CCccchhhhHHhhhhhhhcCC-------CCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 187 EDLVGVDSHIQRINSLLCIGL-------PDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
..++|.+..++.+...+.... .....+.|+|++|+|||+||+.+++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 357999999998887775421 12357899999999999999999997643
No 94
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.10 E-value=0.0017 Score=63.34 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=36.6
Q ss_pred hhhhHHhhhhhhhcCCC-CceEEEeeccccchHHHHHHHHHhhhc-ccccceeEee
Q 044627 192 VDSHIQRINSLLCIGLP-DFRMVRPWDMHGIAKTDIARAILNQIS-SQFEGRSFMA 245 (524)
Q Consensus 192 R~~el~~l~~~L~~~~~-~~~~v~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~wv~ 245 (524)
+...++.+.+++..... ....+.|+|.+|+|||+||..+++... .....+.++.
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33444555566654221 246788999999999999999999876 5444455555
No 95
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.83 E-value=0.0026 Score=58.34 Aligned_cols=34 Identities=9% Similarity=-0.072 Sum_probs=27.0
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...++.|.|.+|+||||||..++. ..-..++|+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 456899999999999999999988 2234567776
No 96
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.80 E-value=0.0005 Score=61.85 Aligned_cols=113 Identities=12% Similarity=0.013 Sum_probs=58.7
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHH---hC----CCCc------ccCC
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQI---LG----ENII------KTSI 277 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l---~~----~~~~------~~~~ 277 (524)
..|.|++-.|.||||+|...+-+...+--.++++...+.. ...+-..+...+.-.+ +. ...+ ....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4566777777999999999888766554456666433211 1222233333320000 00 0000 0112
Q ss_pred chHHHHHHhcc-CCeEEEecCCC--------ChhhHHHHhCCCCCCCCCcEEEEecCCh
Q 044627 278 PPRYINKRLQQ-MKVCIILDNVD--------KFGHSEYLTGGLSRFGHGSRVIVTTRDK 327 (524)
Q Consensus 278 ~~~~l~~~L~~-~~~LlVlDdv~--------~~~~~~~l~~~~~~~~~gs~IIiTTR~~ 327 (524)
.....++.+.+ +-=|||||++. +.+.+-.++... .....||+|+|+.
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R---p~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR---PGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS---CTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC---cCCCEEEEECCCC
Confidence 23344455544 34599999993 223333333332 2567899999985
No 97
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.79 E-value=0.0036 Score=62.00 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=35.5
Q ss_pred Hhhhhhhh-cCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 197 QRINSLLC-IGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 197 ~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.+|...|. .+-....++.|.|.+|+||||||.+++......-..++|++
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34555554 23334679999999999999999999987654434567776
No 98
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.77 E-value=0.00085 Score=65.13 Aligned_cols=33 Identities=15% Similarity=-0.010 Sum_probs=25.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.+++.|+|++|+|||+||.+++.. .-..+.|+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs 155 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYAT 155 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEE
Confidence 457789999999999999999886 122356666
No 99
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.64 E-value=0.00086 Score=66.07 Aligned_cols=48 Identities=23% Similarity=0.319 Sum_probs=39.9
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
..++|++..++.+...+..+ ..+.|+|.+|+|||+||+.+++.....|
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 46999999999988887653 3678999999999999999999775443
No 100
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.61 E-value=0.048 Score=53.70 Aligned_cols=164 Identities=10% Similarity=-0.050 Sum_probs=98.8
Q ss_pred hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhc-ccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccC
Q 044627 198 RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQIS-SQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTS 276 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~ 276 (524)
++.+.|. + .-.++..++|..|.||++.+..+.+.+. ..|+....+. .....++..+...+..
T Consensus 8 ~l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~----------- 70 (343)
T 1jr3_D 8 QLRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS----IDPNTDWNAIFSLCQA----------- 70 (343)
T ss_dssp THHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE----CCTTCCHHHHHHHHHH-----------
T ss_pred HHHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE----ecCCCCHHHHHHHhcC-----------
Confidence 3444454 2 2467899999999999999999988654 3343211111 1112344443333211
Q ss_pred CchHHHHHHhccCCeEEEecCCCC-h--hhHHHHhCCCCCCCCCcEEEEecCC-------hhhhhhc-CCCeEEEcCCCC
Q 044627 277 IPPRYINKRLQQMKVCIILDNVDK-F--GHSEYLTGGLSRFGHGSRVIVTTRD-------KKVLDKY-GVDYVYKVEGFN 345 (524)
Q Consensus 277 ~~~~~l~~~L~~~~~LlVlDdv~~-~--~~~~~l~~~~~~~~~gs~IIiTTR~-------~~~~~~~-~~~~~~~l~~L~ 345 (524)
.-+-+.+-++|+|+++. . +..+.|...+....+++.+|+++.+ ..+.... .....++..+++
T Consensus 71 -------~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~ 143 (343)
T 1jr3_D 71 -------MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPE 143 (343)
T ss_dssp -------HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCC
T ss_pred -------cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCC
Confidence 11234566888999865 3 4455565555444467777766543 2333332 245688999999
Q ss_pred HHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCChHHHHH
Q 044627 346 YRESLEIFCYYAFRQNHCPGDLLVLSDNVVDYANGSSLALNV 387 (524)
Q Consensus 346 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 387 (524)
.++..+.+...+-..+. .-..+.+..+++.++|.+..+..
T Consensus 144 ~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNL--ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp TTHHHHHHHHHHHHTTC--EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhchHHHHHHH
Confidence 99998888776643321 12245678888889998877654
No 101
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.47 E-value=0.0017 Score=60.03 Aligned_cols=107 Identities=14% Similarity=-0.125 Sum_probs=57.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhcc-
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQ- 288 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~- 288 (524)
..++.++|..|+||||++..++++...+-..++.+.... ... + ...+++.++.......-.....+.+.+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~--d~r-~----~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI--DTR-S----IRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC--CGG-G----CSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc--Cch-H----HHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 468899999999999999999998765544445443111 001 1 01222223221111101112233333332
Q ss_pred ---C-CeEEEecCCCC--hhhHHHHhCCCCCCCCCcEEEEecCC
Q 044627 289 ---M-KVCIILDNVDK--FGHSEYLTGGLSRFGHGSRVIVTTRD 326 (524)
Q Consensus 289 ---~-~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiTTR~ 326 (524)
. .-+||+|.+.. .++++.+....+ .|..||+|.+.
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~ 125 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLD 125 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCS
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecc
Confidence 3 45999999942 344444332111 26789999884
No 102
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.46 E-value=0.0048 Score=59.64 Aligned_cols=34 Identities=9% Similarity=0.053 Sum_probs=27.9
Q ss_pred EEEeeccccchHHHHHHHHHhhhcccc--cceeEee
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISSQF--EGRSFMA 245 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~wv~ 245 (524)
++.|+|.+|+||||||.+++......+ ..++|++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 789999999999999999888765542 3577877
No 103
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.46 E-value=0.0034 Score=56.94 Aligned_cols=44 Identities=9% Similarity=0.031 Sum_probs=32.9
Q ss_pred hhhhHHhhhhhhhcC-CCCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 192 VDSHIQRINSLLCIG-LPDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 192 R~~el~~l~~~L~~~-~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
|+..++++.+.+... .....+|+|.|..|+|||||++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455666666655542 23467999999999999999999988653
No 104
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.46 E-value=0.0033 Score=68.84 Aligned_cols=151 Identities=17% Similarity=0.207 Sum_probs=78.1
Q ss_pred CCCccchhhhHHhhhhhhhcC-----------CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccccccc
Q 044627 186 SEDLVGVDSHIQRINSLLCIG-----------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRV 254 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (524)
-..+.|.+...++|.+.+... ....+-|.++|++|.|||.||+++++.....| +. ++
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f-----~~----v~--- 543 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF-----IS----IK--- 543 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE-----EE----CC---
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce-----EE----ec---
Confidence 345778888888877665321 12355688999999999999999999876432 22 11
Q ss_pred CHHHHHHHHHHHHhCCCCcccCCchHHHHHHh-ccCCeEEEecCCCChh----------------hHHHHhCCCCCCC--
Q 044627 255 ELEHLRDQILSQILGENIIKTSIPPRYINKRL-QQMKVCIILDNVDKFG----------------HSEYLTGGLSRFG-- 315 (524)
Q Consensus 255 ~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~~-- 315 (524)
.. .++....+.. +.....+.+.. +..+++|+||+++..- .+..|+..+....
T Consensus 544 -~~----~l~s~~vGes----e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 544 -GP----ELLTMWFGES----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp -HH----HHHTTTCSSC----HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred -cc----hhhccccchH----HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 11 1111111111 11122222222 3468999999996321 1233333222122
Q ss_pred CCcEEEEecCChhh-----hhhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 044627 316 HGSRVIVTTRDKKV-----LDKYGVDYVYKVEGFNYRESLEIFCYYA 357 (524)
Q Consensus 316 ~gs~IIiTTR~~~~-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 357 (524)
.+.-||.||..+.. +..-.....+.++..+.++-.++|..+.
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 23334445544332 2211346678888877777778877655
No 105
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.45 E-value=0.0014 Score=58.04 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.8
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.+|.|+|++|+||||+|+.+++++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999999765
No 106
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.39 E-value=0.0021 Score=64.17 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=35.6
Q ss_pred ccchhhhHHhhhhhhh-------------cCCCCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 189 LVGVDSHIQRINSLLC-------------IGLPDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 189 ~vGR~~el~~l~~~L~-------------~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
++|.+..++.+...+. ........|.|+|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 6788887777776662 1111345788999999999999999999874
No 107
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.39 E-value=0.031 Score=49.52 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.1
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.++|.|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988653
No 108
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.39 E-value=0.0079 Score=59.71 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=34.4
Q ss_pred hhhhhhh-cCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 198 RINSLLC-IGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 198 ~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.|..+|. .+-....++.|.|.+|+||||||.+++......-..++|++
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3444443 22234568999999999999999999887654444678887
No 109
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.38 E-value=0.013 Score=55.36 Aligned_cols=39 Identities=15% Similarity=0.090 Sum_probs=29.6
Q ss_pred HHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 196 IQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..-+..+|....+....+.|+|++|.|||.||.++++.+
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 344667776542345579999999999999999999853
No 110
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.36 E-value=0.00055 Score=61.45 Aligned_cols=25 Identities=8% Similarity=-0.125 Sum_probs=21.4
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.++.|+|+.|+||||++..++++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999988877654
No 111
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.33 E-value=0.0086 Score=59.35 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=34.3
Q ss_pred hhhhhhh-cCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 198 RINSLLC-IGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 198 ~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.|...|. .+-....++.|+|.+|+||||||.+++......-..++|++
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3444454 22234568999999999999999999886654444577777
No 112
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.28 E-value=0.013 Score=57.38 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=28.5
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...+|+|+|.+|+||||++..++..+...-..+.++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4679999999999999999999887665433344443
No 113
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.25 E-value=0.011 Score=58.96 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=34.3
Q ss_pred hhhhhhh-cCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 198 RINSLLC-IGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 198 ~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.|...|. .+-....++.|+|.+|+||||||.+++......-..++|++
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3444453 22234568899999999999999999887654444678887
No 114
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.20 E-value=0.0015 Score=65.04 Aligned_cols=111 Identities=13% Similarity=0.015 Sum_probs=64.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccc-eeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhcc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEG-RSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQ 288 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~ 288 (524)
..+++|.|+.|+|||||.+.+...+...... ++.+.+-.+....... .+..+. ............+...|..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~-----~~v~q~--~~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK-----CLVNQR--EVHRDTLGFSEALRSALRE 195 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS-----SEEEEE--EBTTTBSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc-----cceeee--eeccccCCHHHHHHHHhhh
Confidence 3589999999999999999988865443222 2222211000000000 000000 0000022345578888899
Q ss_pred CCeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCChhhh
Q 044627 289 MKVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKVL 330 (524)
Q Consensus 289 ~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~ 330 (524)
.+=+|++|...+.+.++.+..... .|..||+||-.....
T Consensus 196 ~PdvillDEp~d~e~~~~~~~~~~---~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALTAAE---TGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHH---TTCEEEEEESCSSHH
T ss_pred CcCEEecCCCCCHHHHHHHHHHHh---cCCEEEEEEccChHH
Confidence 999999999988777666544322 366788888766544
No 115
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.20 E-value=0.0023 Score=56.07 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=22.4
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.+|+|.|++|+||||+|+.++.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998764
No 116
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.11 E-value=0.0042 Score=56.66 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=24.3
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
....+|+|.|..|+|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999999988665
No 117
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.10 E-value=0.014 Score=57.68 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=33.0
Q ss_pred hhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc------cccceeEee
Q 044627 199 INSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS------QFEGRSFMA 245 (524)
Q Consensus 199 l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~wv~ 245 (524)
|..+|..+-....++.|+|.+|+||||||.+++..... .-..++|++
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 44444333345678999999999999999998886322 223577887
No 118
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.07 E-value=0.0029 Score=56.34 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=23.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.+.|.|+|++|+||||+|+.+++++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998764
No 119
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.07 E-value=0.0056 Score=58.07 Aligned_cols=110 Identities=10% Similarity=0.035 Sum_probs=62.2
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccccc-ccCHHHHHHHHHHHHhCCCCcc-cCCchHHHHHHh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESK-RVELEHLRDQILSQILGENIIK-TSIPPRYINKRL 286 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~l~~~ll~~l~~~~~~~-~~~~~~~l~~~L 286 (524)
...+++|+|+.|+|||||++.++..+...+.+.+++.... ... ...... + +....... .......+.+.|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~----~---v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKS----I---VNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSS----E---EEEEEBTTTBSCHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcce----e---eeHHHhCCCHHHHHHHHHHHH
Confidence 3568999999999999999998886544334444443110 000 000000 0 00000000 123455677777
Q ss_pred ccCCeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCChhh
Q 044627 287 QQMKVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKKV 329 (524)
Q Consensus 287 ~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~ 329 (524)
...+=+|++|...+.+....+.... ..|..|++||-+...
T Consensus 96 ~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 96 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 7788899999997666554443322 236678888876543
No 120
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.04 E-value=0.008 Score=58.97 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=28.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhccc------ccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQ------FEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~wv~ 245 (524)
...++.|+|.+|+||||||.+++...... -..++|++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 45689999999999999999998764322 23577877
No 121
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.04 E-value=0.0032 Score=56.96 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=23.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...|+|.|++|+||||+|+.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998774
No 122
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.04 E-value=0.012 Score=57.36 Aligned_cols=53 Identities=9% Similarity=-0.008 Sum_probs=37.3
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHH
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQ 266 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~ 266 (524)
....++.|.|.+|+||||||.+++.....+-..++|++ . ..+...+...+...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s----l--E~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS----L--EMGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE----S--SSCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE----C--CCCHHHHHHHHHHH
Confidence 34568999999999999999999876544335677776 2 24555555555544
No 123
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.98 E-value=0.0031 Score=62.33 Aligned_cols=50 Identities=14% Similarity=0.022 Sum_probs=35.8
Q ss_pred CCCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 184 GNSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 184 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.....++|.+..++.+...+.... ...+.|+|.+|+|||+||+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 344569999886665544433221 23488999999999999999998664
No 124
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.96 E-value=0.0042 Score=64.62 Aligned_cols=45 Identities=24% Similarity=0.110 Sum_probs=38.1
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..++|++..++.+...+..+ ..|.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 35899999999888877653 3688999999999999999998764
No 125
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.94 E-value=0.0032 Score=55.16 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.1
Q ss_pred eEEEeeccccchHHHHHHHHHhhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.+|+|.|++|+||||+|+.+ .++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 544
No 126
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.93 E-value=0.04 Score=53.37 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=28.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...+++|+|.+|+||||++..++..+...-..+.++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 4679999999999999999999987755433344443
No 127
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.89 E-value=0.0062 Score=54.37 Aligned_cols=26 Identities=8% Similarity=0.203 Sum_probs=23.2
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
..|.|.|++|+||||+|+.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998764
No 128
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.88 E-value=0.0056 Score=57.37 Aligned_cols=41 Identities=5% Similarity=-0.143 Sum_probs=29.0
Q ss_pred hhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 194 SHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 194 ~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..+.++...+.........|+|.|++|+||||+|+.+++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444444333322346789999999999999999998866
No 129
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.87 E-value=0.026 Score=49.17 Aligned_cols=94 Identities=20% Similarity=0.209 Sum_probs=64.6
Q ss_pred CchHHHHHHHHHhCCCceEecC-CcC----C----CCcchHHHHHhhhhcceEEEEeecCccCchhhHHHHHHHHHhHhh
Q 044627 26 NNFTSHLFAAFCREKIKAFIDE-QLK----K----GDDISSALLNAIEESKISVIIFSKGYASSTWCLEELVKILECKKR 96 (524)
Q Consensus 26 ~~~~~~l~~~L~~~g~~~~~d~-~~~----~----g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~~~~~~~ 96 (524)
......|...-....+..|.|. +.. . -..|...+.+.|..|+.+|+++|++...|.|-.+|+..++. .
T Consensus 31 i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~ 107 (189)
T 3hyn_A 31 FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---T 107 (189)
T ss_dssp HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---T
T ss_pred HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---h
Confidence 3456677777766666667775 442 2 34688899999999999999999999999999999998872 2
Q ss_pred cCCeeEeeEeEe-ccCcccccCCchHh
Q 044627 97 KGQTVIPVFYNV-DPSDVRNQTGSFGD 122 (524)
Q Consensus 97 ~~~~v~Pi~~~v-~p~~vr~~~g~~~~ 122 (524)
.+.+||-|..+- +.+++.+-.|++..
T Consensus 108 ~~~PII~Vy~~~~~~~~i~~~~g~~~~ 134 (189)
T 3hyn_A 108 KGLPVIVIYPDYDKKSDIVDSNGNFKK 134 (189)
T ss_dssp TCCCEEEEETTCCSGGGTBCTTSCBCH
T ss_pred cCCcEEEEECCccccchhhhccccchh
Confidence 334566554331 13345544454433
No 130
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.87 E-value=0.0068 Score=54.83 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=24.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...+|+|.|++|+||||||+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998775
No 131
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.82 E-value=0.0046 Score=54.58 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.5
Q ss_pred eEEEeeccccchHHHHHHHHHh
Q 044627 211 RMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
.+|.|.|++|+||||+|+.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 132
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.77 E-value=0.0081 Score=57.87 Aligned_cols=29 Identities=14% Similarity=-0.026 Sum_probs=24.9
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
....+|+|.|..|+||||||+.+...+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45779999999999999999998886653
No 133
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.77 E-value=0.0048 Score=54.00 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=23.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...|+|.|++|+||||+|+.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998765
No 134
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.75 E-value=0.014 Score=56.35 Aligned_cols=36 Identities=11% Similarity=-0.008 Sum_probs=28.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..++++.|.+|+||||++..++..+...-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 678999999999999999999887655433455554
No 135
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.75 E-value=0.004 Score=54.75 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.4
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.+|+|+|++|+|||||++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988764
No 136
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.75 E-value=0.0063 Score=54.42 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=22.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
...|.|.|++|+||||+|+.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 137
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.74 E-value=0.004 Score=55.22 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=22.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.+.|.|+|++|+||||+|+.+++.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999998763
No 138
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.70 E-value=0.0042 Score=55.60 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=23.4
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
|.|.|+|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5688999999999999999988765444
No 139
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.69 E-value=0.0066 Score=59.75 Aligned_cols=46 Identities=17% Similarity=0.063 Sum_probs=31.3
Q ss_pred hhhHHhhhhhhhc--CCCCceEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 193 DSHIQRINSLLCI--GLPDFRMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 193 ~~el~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
+.-.+.+.+.+.. ..+....|.|.|++|+||||+++.++..+...|
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3334444444432 223456789999999999999999998766544
No 140
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.64 E-value=0.0047 Score=54.94 Aligned_cols=25 Identities=16% Similarity=0.225 Sum_probs=22.2
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
++|+|.|++|+||||+|+.++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998764
No 141
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.63 E-value=0.0098 Score=52.99 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=24.4
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
....|.|.|++|+||||+++.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999999999987754
No 142
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.62 E-value=0.0078 Score=53.00 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..+|+|.|++|+|||||++.++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998865
No 143
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.62 E-value=0.0047 Score=54.51 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.8
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.|.|.|++|+||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 144
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.61 E-value=0.005 Score=55.77 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=22.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..+|+|.|++|+||||||+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 145
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.61 E-value=0.029 Score=54.93 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=24.7
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
...+++|+|+.|+|||||++.++..+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46799999999999999999998865443
No 146
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.60 E-value=0.0061 Score=54.47 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=22.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..+++|.|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999876
No 147
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.58 E-value=0.0085 Score=54.19 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.9
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..+|+|.|+.|+|||||++.++..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999998876
No 148
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.55 E-value=0.0062 Score=54.33 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=23.2
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
..|.|.|++|+||||+|+.++.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999997753
No 149
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.55 E-value=0.0096 Score=53.77 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=29.9
Q ss_pred HHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 196 IQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
+..+..++.. -+....+.|+|++|+|||++|..+++.+..
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5556666653 223446899999999999999999987643
No 150
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.54 E-value=0.057 Score=55.00 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=28.2
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhccc-ccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQ-FEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~ 245 (524)
..++|.++|.+|+||||++..++..+... -..+..++
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 46799999999999999999999877654 23344443
No 151
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.52 E-value=0.015 Score=52.85 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=20.7
Q ss_pred EEEeeccccchHHHHHHHHHhhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
+|.|.|++|+||||+|+.+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999876
No 152
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.52 E-value=0.038 Score=49.93 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=18.5
Q ss_pred EEEeeccccchHHHHHHHHHhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
++.|+|.+|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6779999999999999876543
No 153
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.50 E-value=0.007 Score=57.09 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=22.3
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
++|.|.|++|+||||||+.++.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 154
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.48 E-value=0.005 Score=54.62 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=18.9
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...|.|.|++|+||||+|+.+++.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999988764
No 155
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.48 E-value=0.007 Score=54.24 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=23.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...|+|.|++|+||||+|+.+++.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 156
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.48 E-value=0.0075 Score=53.58 Aligned_cols=26 Identities=12% Similarity=0.316 Sum_probs=22.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999988654
No 157
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.46 E-value=0.012 Score=53.26 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=23.9
Q ss_pred eEEEeeccccchHHHHHHHHHhhhccc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
..|+|.|++|+||||+|+.+++.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 578999999999999999999977543
No 158
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.46 E-value=0.0059 Score=53.55 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=22.3
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..|+|.|++|+||||+|+.+++.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 159
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.44 E-value=0.008 Score=53.73 Aligned_cols=26 Identities=15% Similarity=0.034 Sum_probs=22.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...|+|.|++|+||||+|+.+++.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988653
No 160
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.42 E-value=0.0084 Score=56.46 Aligned_cols=28 Identities=7% Similarity=0.087 Sum_probs=24.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
...+|+|.|++|+||||+|+.++..+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4678999999999999999999887653
No 161
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.41 E-value=0.0083 Score=53.48 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=22.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
...|+|+|++|+||||+++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999887
No 162
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.41 E-value=0.009 Score=55.64 Aligned_cols=37 Identities=19% Similarity=0.020 Sum_probs=28.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...++.|.|.+|+||||||.+++......-..++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3468999999999999999998876544434567766
No 163
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.40 E-value=0.0097 Score=53.80 Aligned_cols=26 Identities=8% Similarity=0.104 Sum_probs=23.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
....|+|.|++|+||||+|+.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998865
No 164
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.38 E-value=0.0083 Score=54.67 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=24.1
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
...+|+|.|+.|+|||||++.++..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3568999999999999999999887643
No 165
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.38 E-value=0.0074 Score=54.44 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=22.3
Q ss_pred EEEeeccccchHHHHHHHHHhhhcc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
.|+|.|+.|+||||+|+.+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5889999999999999999987653
No 166
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.37 E-value=0.019 Score=56.32 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=38.1
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQIL 268 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~ 268 (524)
...++.|.|.+|+||||||..++.....+-..++|++ -..+...+...++....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALSDLT 98 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHHHhh
Confidence 4568999999999999999999887654334566665 23455666666655543
No 167
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.36 E-value=0.011 Score=53.71 Aligned_cols=28 Identities=7% Similarity=0.117 Sum_probs=24.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
...|+|.|++|+||||+|+.+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999987543
No 168
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.35 E-value=0.045 Score=51.76 Aligned_cols=25 Identities=28% Similarity=0.183 Sum_probs=21.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
-.+++|.|+.|+|||||.+.++.-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999988754
No 169
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.34 E-value=0.0077 Score=54.10 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=23.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...|+|.|++|+||||+|+.+++++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998764
No 170
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.33 E-value=0.041 Score=55.92 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=24.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
.+.+|.++|.+|+||||++..++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999988866544
No 171
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.32 E-value=0.0087 Score=53.18 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=22.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...|+|.|++|+||||+|+.+++++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999988663
No 172
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.31 E-value=0.013 Score=56.35 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=23.5
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...+|.|.|++|+||||+|+.++.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999988653
No 173
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.28 E-value=0.015 Score=58.16 Aligned_cols=108 Identities=12% Similarity=0.073 Sum_probs=61.5
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhccccccee-EeeeecccccccCHHHHHHHHHHH--HhCCCCcccCCchHHHHHH
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRS-FMANVREESKRVELEHLRDQILSQ--ILGENIIKTSIPPRYINKR 285 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~l~~~ll~~--l~~~~~~~~~~~~~~l~~~ 285 (524)
...+++|+|+.|+|||||++.++..+.....+.+ ++.+-.+....... .+..+ ++. ........+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~-----~~v~Q~~~g~----~~~~~~~~l~~~ 205 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK-----SIVNQREVGE----DTKSFADALRAA 205 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSS-----SEEEEEEBTT----TBSCSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCc-----eEEEeeecCC----CHHHHHHHHHHH
Confidence 3568999999999999999999886654323333 33210000000000 00000 000 023445677788
Q ss_pred hccCCeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCChh
Q 044627 286 LQQMKVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKK 328 (524)
Q Consensus 286 L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~ 328 (524)
|...+-+|++|.+.+.+.+...+... ..|..||.|+-...
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 88888899999998776655443322 23566777776543
No 174
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.27 E-value=0.0078 Score=54.64 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=23.5
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..++|+|.|++|+|||||++.+...+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999988764
No 175
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.27 E-value=0.0093 Score=52.01 Aligned_cols=24 Identities=4% Similarity=0.063 Sum_probs=21.7
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.|+|.|++|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 176
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.26 E-value=0.014 Score=51.27 Aligned_cols=29 Identities=7% Similarity=0.031 Sum_probs=24.7
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
..++++|.|..|+|||||+..+...+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999877544
No 177
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.25 E-value=0.012 Score=54.10 Aligned_cols=36 Identities=8% Similarity=-0.065 Sum_probs=27.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..+++|.|.+|+|||||++.++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 468999999999999999999876543333455554
No 178
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.24 E-value=0.0099 Score=52.98 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=23.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..+|+|.|++|+||||+|+.+++.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988764
No 179
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.23 E-value=0.01 Score=53.03 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=23.7
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
++++|.|+.|+|||||++.+...+...|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5789999999999999999998765443
No 180
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.22 E-value=0.029 Score=51.96 Aligned_cols=37 Identities=8% Similarity=0.028 Sum_probs=28.4
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcc------cccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISS------QFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~wv~ 245 (524)
...++.|.|.+|+|||||+..++..... .-..++|+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 3568999999999999999999885322 124677776
No 181
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.21 E-value=0.01 Score=53.40 Aligned_cols=26 Identities=12% Similarity=0.006 Sum_probs=23.2
Q ss_pred CCceEEEeeccccchHHHHHHHHHhh
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
....+|+|.|+.|+||||+|+.+++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999885
No 182
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.20 E-value=0.038 Score=56.88 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=27.6
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...+++|+|..|+|||||++.++..+... .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 46799999999999999999998876543 2344443
No 183
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.19 E-value=0.0097 Score=54.65 Aligned_cols=26 Identities=12% Similarity=-0.032 Sum_probs=22.9
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...|+|.|++|+||||+|+.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999998764
No 184
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.18 E-value=0.012 Score=53.13 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=22.9
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...|+|.|++|+||||+|+.++..+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998764
No 185
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.17 E-value=0.011 Score=53.78 Aligned_cols=28 Identities=4% Similarity=0.083 Sum_probs=24.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
...|+|.|+.|+||||+|+.+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 186
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.14 E-value=0.016 Score=56.56 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=29.0
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
++.++|+|+|-|||||||.+.-++.-+...-..+.-++
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35899999999999999999888776655433455554
No 187
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.10 E-value=0.027 Score=55.94 Aligned_cols=41 Identities=15% Similarity=0.048 Sum_probs=30.1
Q ss_pred HHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 196 IQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
..++...+........+|+|+|.+|+|||||+..++..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 33444444433446789999999999999999998876544
No 188
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.06 E-value=0.012 Score=55.64 Aligned_cols=26 Identities=12% Similarity=0.305 Sum_probs=23.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 189
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.05 E-value=0.032 Score=50.76 Aligned_cols=108 Identities=16% Similarity=0.006 Sum_probs=53.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc-cCCchHHHHHHhcc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK-TSIPPRYINKRLQQ 288 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-~~~~~~~l~~~L~~ 288 (524)
..+..++|..|.||||.+...+++....-..++.+.... ....+.. .+.+.++...... .... ..+.+.+.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~--d~R~ge~----~i~s~~g~~~~a~~~~~~-~~~~~~~~~ 100 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI--DNRYSEE----DVVSHNGLKVKAVPVSAS-KDIFKHITE 100 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------CCEEECSSG-GGGGGGCCS
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc--CCcchHH----HHHhhcCCeeEEeecCCH-HHHHHHHhc
Confidence 468889999999999999998887755544444443111 1111111 2333332222211 1111 122222233
Q ss_pred CCeEEEecCCC--ChhhHHHHhCCCCCCCCCcEEEEecCCh
Q 044627 289 MKVCIILDNVD--KFGHSEYLTGGLSRFGHGSRVIVTTRDK 327 (524)
Q Consensus 289 ~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IIiTTR~~ 327 (524)
+--+|++|.+. +.++++.+....+ .|..||+|.++.
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQ 138 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSB
T ss_pred CCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEeccc
Confidence 33499999983 4455544432222 367899999853
No 190
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.05 E-value=0.014 Score=59.53 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=35.5
Q ss_pred CccchhhhHHhhhhhhhcC------------CCCceEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 188 DLVGVDSHIQRINSLLCIG------------LPDFRMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 188 ~~vGR~~el~~l~~~L~~~------------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
.++|-+...+.|...+... ....+-|.++|++|+|||++|+.++..+...|
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 4677776666665544210 11245688999999999999999999875443
No 191
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.04 E-value=0.018 Score=54.14 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=23.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...+|.|.|++|+||||+|+.++..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999988764
No 192
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.04 E-value=0.011 Score=52.67 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.9
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.|+|.|+.|+||||+|+.+++++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999774
No 193
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.03 E-value=0.029 Score=50.09 Aligned_cols=25 Identities=8% Similarity=0.145 Sum_probs=22.2
Q ss_pred EEEeeccccchHHHHHHHHHhhhcc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
.|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 194
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.02 E-value=0.011 Score=54.28 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=22.2
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.+|+|.|++|+||||+|+.++..+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
No 195
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.02 E-value=0.014 Score=53.59 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=24.4
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhh
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
...++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999876
No 196
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.00 E-value=0.23 Score=49.44 Aligned_cols=48 Identities=23% Similarity=0.107 Sum_probs=35.8
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..++|....+.++...+..-......|.|+|.+|.||+++|+.+.+.-
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc
Confidence 468898888888777665422223456799999999999999887643
No 197
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.00 E-value=0.3 Score=48.93 Aligned_cols=47 Identities=19% Similarity=0.007 Sum_probs=35.3
Q ss_pred CCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhh
Q 044627 187 EDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 187 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..++|....++++.+.+..-...-..|.|.|.+|+|||++|+.+...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHh
Confidence 35788888888887777653222334589999999999999988764
No 198
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.98 E-value=0.02 Score=52.61 Aligned_cols=37 Identities=11% Similarity=0.131 Sum_probs=27.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcc------cccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISS------QFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~wv~ 245 (524)
.-.+++|.|++|+|||||++.++..... .-..++|+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 4579999999999999999999874322 123466766
No 199
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.97 E-value=0.019 Score=53.39 Aligned_cols=37 Identities=19% Similarity=0.050 Sum_probs=27.2
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh-cccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI-SSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~wv~ 245 (524)
...++.|.|.+|+|||+||.+++... ...-..++|++
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 45688999999999999999987653 33334455555
No 200
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.97 E-value=0.013 Score=52.35 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=20.6
Q ss_pred eEEEeeccccchHHHHHHHHHhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.+++|.|++|+|||||++.++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999863
No 201
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.96 E-value=0.014 Score=52.97 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=22.9
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
...+|+|.|++|+||||||+.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998754
No 202
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.92 E-value=0.013 Score=52.80 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 203
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.92 E-value=0.013 Score=52.84 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=22.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..+|+|.|++|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998865
No 204
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.91 E-value=0.02 Score=55.83 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=33.9
Q ss_pred ccchhhhHHhhhhhhhcC--CCCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 189 LVGVDSHIQRINSLLCIG--LPDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 189 ~vGR~~el~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
++|-...+..+...+... ...+.+|+|.|..|+|||||++.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456555666555444432 23467999999999999999999877654
No 205
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.90 E-value=0.012 Score=53.16 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=19.9
Q ss_pred EEEeeccccchHHHHHHHHHh
Q 044627 212 MVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~ 232 (524)
.|+|.|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999988
No 206
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.88 E-value=0.014 Score=52.58 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=23.1
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
...+|+|+|+.|+||||+|+.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 36789999999999999999998864
No 207
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.86 E-value=0.012 Score=54.28 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=22.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...|+|.|++|+||||+|+.+++++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999998763
No 208
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.85 E-value=0.016 Score=52.68 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=23.6
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...+|+|.|..|+|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999988654
No 209
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.85 E-value=0.012 Score=54.04 Aligned_cols=26 Identities=12% Similarity=-0.136 Sum_probs=23.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...|.|.|++|+||||+|+.+++++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 210
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.83 E-value=0.014 Score=53.29 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.7
Q ss_pred EEEeeccccchHHHHHHHHHhhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 211
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.81 E-value=0.014 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=20.3
Q ss_pred eEEEeeccccchHHHHHHHHHh
Q 044627 211 RMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 212
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.78 E-value=0.015 Score=62.11 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=40.5
Q ss_pred CCCCccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 185 NSEDLVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 185 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+...
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 3456899999998888888754 478999999999999999999976544
No 213
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.78 E-value=0.016 Score=52.32 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=23.4
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999987654
No 214
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.78 E-value=0.015 Score=54.38 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=23.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...|+|.|++|+|||||++.+++++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999997664
No 215
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.77 E-value=0.018 Score=50.94 Aligned_cols=26 Identities=19% Similarity=0.113 Sum_probs=23.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...|+|.|+.|+||||+++.++..+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46889999999999999999988763
No 216
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.73 E-value=0.047 Score=54.21 Aligned_cols=29 Identities=14% Similarity=-0.093 Sum_probs=24.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
...++|+|.+|+|||||++.+++.+....
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 45789999999999999999988765433
No 217
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.73 E-value=0.028 Score=57.25 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=27.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..+|.|+|.+|+||||++..++..+...-..+..++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 568999999999999999999887654323344444
No 218
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.72 E-value=0.015 Score=53.09 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.6
Q ss_pred EEEeeccccchHHHHHHHHHhhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 219
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.68 E-value=0.088 Score=55.73 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=26.2
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEe
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFM 244 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv 244 (524)
.+++.|+|.+|.||||++..+...+...-..+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 36888999999999999999888665443334433
No 220
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.67 E-value=0.039 Score=56.49 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=29.5
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
....++.|.|.+|+||||||.+++.....+-..++|++
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 34568999999999999999999887654433566665
No 221
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.67 E-value=0.012 Score=53.59 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=21.8
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+|+|.|+.|+||||+|+.+...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988764
No 222
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.66 E-value=0.017 Score=52.01 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=22.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
...|+|.|+.|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999877
No 223
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.63 E-value=0.015 Score=51.11 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.3
Q ss_pred ceEEEeeccccchHHHHHHHHH
Q 044627 210 FRMVRPWDMHGIAKTDIARAIL 231 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~ 231 (524)
..+++|.|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 224
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.61 E-value=0.16 Score=52.02 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=29.3
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhccc-ccceeEee
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISSQ-FEGRSFMA 245 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~ 245 (524)
....++.|.|.+|+||||||..++...... -..++|+.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345689999999999999999999876543 23566665
No 225
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.60 E-value=0.018 Score=54.23 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=23.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..+|+|.|+.|+|||||++.+++++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998764
No 226
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.60 E-value=0.02 Score=53.38 Aligned_cols=37 Identities=19% Similarity=0.058 Sum_probs=26.1
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc-ccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS-SQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~wv~ 245 (524)
...+++|.|++|+|||||++.++.... ..-..++++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 356899999999999999999885322 2223445554
No 227
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.57 E-value=0.014 Score=54.82 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.6
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..|+|.|+.|+||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998764
No 228
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.50 E-value=0.036 Score=50.75 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=29.8
Q ss_pred hhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 194 SHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 194 ~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
...+.+...+.. .....|+|.|.+|+|||||+..++......
T Consensus 24 ~~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 24 RLADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 334445554433 246788899999999999999998865433
No 229
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.48 E-value=0.02 Score=51.78 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=22.1
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+|+|.|+.|+||||+|+.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988764
No 230
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.47 E-value=0.031 Score=50.99 Aligned_cols=45 Identities=13% Similarity=0.061 Sum_probs=32.4
Q ss_pred chhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 191 GVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 191 GR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
+.+...+.+...+.. ...+.|+|.|.+|+|||||+..+.......
T Consensus 13 ~~~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 13 ENKRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred hcHHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 344455555555543 246789999999999999999998875444
No 231
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.45 E-value=0.023 Score=51.76 Aligned_cols=26 Identities=12% Similarity=0.044 Sum_probs=23.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..+|.|.|+.|+||||+|+.++..+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999988765
No 232
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.45 E-value=0.016 Score=52.02 Aligned_cols=108 Identities=14% Similarity=0.034 Sum_probs=55.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc-cCCchHHHHHHhcc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK-TSIPPRYINKRLQQ 288 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-~~~~~~~l~~~L~~ 288 (524)
.++..++|..|.||||.+...+++...+-..++.+.... ....+ ...+...++...... .... ..+.+.+.+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~--d~r~~----~~~i~s~~g~~~~a~~~~~~-~~i~~~~~~ 80 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI--DNRYS----KEDVVSHMGEKEQAVAIKNS-REILKYFEE 80 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------------CEEECTTSCEEECEEESSS-THHHHHCCT
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc--Cccch----HHHHHhhcCCceeeEeeCCH-HHHHHHHhc
Confidence 468999999999999999998887654433333332110 00000 001111221110111 1111 234444444
Q ss_pred CCeEEEecCCC--ChhhHHHHhCCCCCCCCCcEEEEecCCh
Q 044627 289 MKVCIILDNVD--KFGHSEYLTGGLSRFGHGSRVIVTTRDK 327 (524)
Q Consensus 289 ~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IIiTTR~~ 327 (524)
.--+|++|.+. +.++++.+....+ .+..||+|.++.
T Consensus 81 ~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDM 118 (191)
T ss_dssp TCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSB
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEeccc
Confidence 33489999873 3444554433222 367899998854
No 233
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.44 E-value=0.17 Score=51.66 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=42.3
Q ss_pred HhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc-ccceeEeeeecccccccCHHHHHHHHHHHHh
Q 044627 197 QRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ-FEGRSFMANVREESKRVELEHLRDQILSQIL 268 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~ 268 (524)
..|...+ .+-....++.|.|.+|+||||||..++...... -..++|++ . ..+...+...++....
T Consensus 188 ~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s----l--E~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 188 KELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS----L--EMPAAQLTLRMMCSEA 253 (444)
T ss_dssp HHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE----S--SSCHHHHHHHHHHHHT
T ss_pred Hhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE----C--CCCHHHHHHHHHHHHc
Confidence 3344444 333445689999999999999999998876542 23566666 2 2445566666655443
No 234
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.42 E-value=0.081 Score=54.41 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=26.3
Q ss_pred eEEEeeccccchHHHHHHHHHhhhccccc-ceeEee
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFE-GRSFMA 245 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~wv~ 245 (524)
+.+.|.|.+|+|||+++..++..+..... .+..+.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a 81 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGETGIILAA 81 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence 38899999999999999999887654433 344443
No 235
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.39 E-value=0.076 Score=62.62 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=34.9
Q ss_pred Hhhhhhhh-cCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 197 QRINSLLC-IGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 197 ~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.+|..+|. .+-....++.|.|.+|+||||||.+++......-..++|++
T Consensus 718 ~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 34444553 22234568999999999999999999987665444577776
No 236
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.37 E-value=0.039 Score=56.05 Aligned_cols=36 Identities=11% Similarity=-0.054 Sum_probs=27.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEe
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFM 244 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv 244 (524)
...+|.++|.+|+||||++..++..+...-..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 368999999999999999999988665443333333
No 237
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.34 E-value=0.089 Score=62.89 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=53.4
Q ss_pred hhhhhh-cCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc---
Q 044627 199 INSLLC-IGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK--- 274 (524)
Q Consensus 199 l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~--- 274 (524)
|..+|. .+-...+.|.|+|++|+|||+||.+++.....+=..+.|++ .....+... +..++....+.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~----~e~~~~~l~-----a~~~G~dl~~l~v~ 1485 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPIY-----ARKLGVDIDNLLCS 1485 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC----TTSCCCHHH-----HHHTTCCTTTCEEE
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE----cccccCHHH-----HHHcCCCchhceee
Confidence 444444 22234678999999999999999999887665545677777 333222222 22332111111
Q ss_pred ----cCCchHHHHHHhc-cCCeEEEecCCC
Q 044627 275 ----TSIPPRYINKRLQ-QMKVCIILDNVD 299 (524)
Q Consensus 275 ----~~~~~~~l~~~L~-~~~~LlVlDdv~ 299 (524)
.++....+++..+ .+.-+||+|.+.
T Consensus 1486 ~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1486 QPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp CCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 1122333333332 467899999994
No 238
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.33 E-value=0.017 Score=52.87 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=22.2
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..|.|.|++|+||||+|+.++.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998763
No 239
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.32 E-value=0.021 Score=55.82 Aligned_cols=26 Identities=8% Similarity=0.171 Sum_probs=23.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.++|.|.|+.|+||||||..+++++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999999764
No 240
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.30 E-value=0.082 Score=51.79 Aligned_cols=105 Identities=13% Similarity=0.038 Sum_probs=58.9
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCC
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMK 290 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~ 290 (524)
..++|+|..|+|||||++.++..+.. ..+.+.+.+..+.... ... ..+.-- ..........+...|..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~-~~~-------~~i~~~-~ggg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK-HHK-------NYTQLF-FGGNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS-SCS-------SEEEEE-CBTTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc-cch-------hEEEEE-eCCChhHHHHHHHHhhhCC
Confidence 47999999999999999999886543 2455666533211100 000 000000 0002234556777788888
Q ss_pred eEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCChh
Q 044627 291 VCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRDKK 328 (524)
Q Consensus 291 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~ 328 (524)
-+|++|.+.+.+.++.+.. +.. .+..+|+||....
T Consensus 242 ~ilildE~~~~e~~~~l~~-~~~--g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 242 DRIILGELRSSEAYDFYNV-LCS--GHKGTLTTLHAGS 276 (330)
T ss_dssp SEEEECCCCSTHHHHHHHH-HHT--TCCCEEEEEECSS
T ss_pred CEEEEcCCChHHHHHHHHH-Hhc--CCCEEEEEEcccH
Confidence 8999999977555444332 221 1223666665443
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.30 E-value=0.035 Score=53.78 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=24.1
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
...+++|+|++|+|||||+..++..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999886554
No 242
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.24 E-value=0.031 Score=51.27 Aligned_cols=35 Identities=14% Similarity=-0.209 Sum_probs=26.0
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
-.|.+.|.||+||||+|..++......-..+.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 34778999999999999999987655433344444
No 243
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.23 E-value=0.019 Score=51.82 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=21.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.+.++|+|+.|+|||||++.+...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999988754
No 244
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.20 E-value=0.027 Score=52.66 Aligned_cols=26 Identities=8% Similarity=0.069 Sum_probs=22.9
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
...+|+|.|..|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999988754
No 245
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.19 E-value=0.025 Score=52.38 Aligned_cols=26 Identities=12% Similarity=-0.066 Sum_probs=22.9
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...|.|.|++|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998764
No 246
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.15 E-value=0.028 Score=51.37 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=20.9
Q ss_pred ceEEEeeccccchHHHHHHHHHh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 247
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.14 E-value=0.024 Score=52.55 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=23.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..+|+|.|++|+||||+|+.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998764
No 248
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.14 E-value=0.026 Score=54.02 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.6
Q ss_pred CceEEEeeccccchHHHHHHHHHh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
...+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999983
No 249
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.13 E-value=0.024 Score=51.67 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=20.9
Q ss_pred EEEeeccccchHHHHHHHHHhhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.|+|.|++|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998876
No 250
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.12 E-value=0.026 Score=55.30 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=22.7
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.+|+|.|+.|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 251
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.09 E-value=0.024 Score=55.18 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.7
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
++|.|+|+.|+||||||..+++++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999998764
No 252
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.09 E-value=0.064 Score=52.42 Aligned_cols=36 Identities=17% Similarity=0.051 Sum_probs=29.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..++...|.||+||||+|..++..+...-..++-++
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 467788999999999999999987766644566666
No 253
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.06 E-value=0.026 Score=51.95 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=21.4
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.|+|.|++|+||||+|+.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988763
No 254
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.03 E-value=0.076 Score=51.78 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=26.2
Q ss_pred hhhhhhcCCCCceEEEeeccccchHHHHHHHHHhh
Q 044627 199 INSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 199 l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
|..+|..+-....++.|+|.+|+|||+||.+++..
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44444322234678999999999999999998875
No 255
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.02 E-value=0.054 Score=55.30 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=24.6
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccce
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGR 241 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 241 (524)
..++|+|.+|+|||||+..++.....++..+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 3588999999999999999988765544433
No 256
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.96 E-value=0.031 Score=54.40 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=24.1
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
....+|+|.|..|+|||||++.++.-+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3467999999999999999999887554
No 257
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.96 E-value=0.4 Score=45.67 Aligned_cols=29 Identities=7% Similarity=-0.004 Sum_probs=22.3
Q ss_pred chHHHHHhhhhcceEEEEeecCccCchhh
Q 044627 55 ISSALLNAIEESKISVIIFSKGYASSTWC 83 (524)
Q Consensus 55 ~~~~i~~~i~~s~~~i~v~S~~y~~s~wc 83 (524)
....+.+.+++++..|.|+.-.--.+..|
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~ 41 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN 41 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC
Confidence 45678889999999999998665555544
No 258
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.96 E-value=0.08 Score=53.70 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=23.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
...+|.|+|++|+||||+|+.++.++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998865
No 259
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.96 E-value=0.043 Score=53.13 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=29.2
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..++|+|+|-||+||||+|..++..+...-..++.++
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4788999999999999999999887765533455555
No 260
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.94 E-value=0.083 Score=50.74 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=28.1
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhccccc-ceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFE-GRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~wv~ 245 (524)
...+++|.|.+|+|||||++.++..+..... .++|+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3468999999999999999999887654322 455554
No 261
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.94 E-value=0.017 Score=55.60 Aligned_cols=27 Identities=4% Similarity=0.083 Sum_probs=20.6
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...+|+|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 262
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.90 E-value=0.044 Score=51.77 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=27.2
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
++|+|.|-||+||||+|..++..+...-..++.++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57788999999999999999987765433455554
No 263
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.83 E-value=0.044 Score=52.87 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=27.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcc-cccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISS-QFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~wv~ 245 (524)
...+++|+|.+|+||||++..++..+.. .-..+.++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3569999999999999999999887653 222344444
No 264
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.83 E-value=0.053 Score=50.94 Aligned_cols=27 Identities=15% Similarity=0.039 Sum_probs=23.7
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...++.+.|.||+|||||+..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 367889999999999999999987665
No 265
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.79 E-value=0.034 Score=53.68 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=22.9
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 36889999999999999999998753
No 266
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.77 E-value=0.031 Score=50.69 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..+++|.|+.|+|||||++.++.-+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998755
No 267
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.74 E-value=0.029 Score=51.50 Aligned_cols=25 Identities=16% Similarity=0.273 Sum_probs=22.2
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..+++|+|+.|+|||||++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998755
No 268
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.73 E-value=0.049 Score=53.88 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=31.7
Q ss_pred hhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc--cc---c-ceeEee
Q 044627 200 NSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS--QF---E-GRSFMA 245 (524)
Q Consensus 200 ~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~--~f---~-~~~wv~ 245 (524)
...|..+-....++.|+|.+|+|||||+..++..... .. . .++|++
T Consensus 121 D~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~ 172 (349)
T 1pzn_A 121 DKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 172 (349)
T ss_dssp HHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe
Confidence 3344333334679999999999999999999886521 11 2 347777
No 269
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.73 E-value=0.048 Score=52.74 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=24.0
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
...+++|+|+.|+|||||++.++..+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999886543
No 270
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.67 E-value=0.051 Score=52.08 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=27.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.++|+|.|-||+||||+|..++..+...-..++.++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 367888999999999999999887655433455554
No 271
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.61 E-value=0.061 Score=52.15 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=23.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...+|+|.|..|+|||||++.+...+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999988654
No 272
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.60 E-value=0.043 Score=47.56 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=23.2
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
...+++|.|+.|.|||||++.++.-+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999998866
No 273
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.60 E-value=0.063 Score=49.89 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=26.0
Q ss_pred EEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 213 VRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
|+|.|-||+||||+|..++..+...-..++-++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 556999999999999999998766544555555
No 274
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.60 E-value=0.054 Score=47.76 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=23.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
.++++|.|..|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568999999999999999999887543
No 275
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.59 E-value=0.14 Score=61.12 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=39.5
Q ss_pred chhhhHHhhhhhhh-cCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 191 GVDSHIQRINSLLC-IGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 191 GR~~el~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
+...-..+|..+|. .+-....++.|+|.+|+||||||.+++......-..++|++
T Consensus 363 ~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 363 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp EECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred eeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 33444455666664 23334679999999999999999999987765445677877
No 276
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.59 E-value=0.044 Score=52.85 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=23.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.++|.|.|+.|+||||||..+++++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 56899999999999999999998753
No 277
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.58 E-value=0.087 Score=48.66 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=24.7
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
....|+|.|++|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3568999999999999999999998765
No 278
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.58 E-value=0.08 Score=47.67 Aligned_cols=34 Identities=6% Similarity=0.035 Sum_probs=26.4
Q ss_pred EEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 212 MVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.|+|-|.-|+||||.++.+++.+......+.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3778999999999999999998866544444443
No 279
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.56 E-value=0.03 Score=49.28 Aligned_cols=26 Identities=8% Similarity=0.092 Sum_probs=22.8
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
++++|+|..|+|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57899999999999999999886654
No 280
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.56 E-value=0.054 Score=54.07 Aligned_cols=28 Identities=25% Similarity=0.117 Sum_probs=24.0
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.....++|+|++|+|||||++.++....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4466899999999999999999997543
No 281
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.55 E-value=0.037 Score=53.36 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=21.0
Q ss_pred eEEEeeccccchHHHHHHHHHhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.+|.|.|++|+||||+|+.++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 282
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.55 E-value=0.037 Score=50.82 Aligned_cols=26 Identities=15% Similarity=0.122 Sum_probs=23.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..+++|.|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 56899999999999999999988654
No 283
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.48 E-value=0.037 Score=49.70 Aligned_cols=25 Identities=16% Similarity=0.011 Sum_probs=22.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.+.|.|.|.+|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578899999999999999998864
No 284
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.46 E-value=0.098 Score=51.70 Aligned_cols=38 Identities=11% Similarity=0.004 Sum_probs=28.9
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
....++...|.||+||||+|..++..+...-..++-++
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34667788899999999999999887765544455555
No 285
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.46 E-value=0.12 Score=53.69 Aligned_cols=54 Identities=7% Similarity=0.001 Sum_probs=38.0
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhccc-ccceeEeeeecccccccCHHHHHHHHHHHH
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQISSQ-FEGRSFMANVREESKRVELEHLRDQILSQI 267 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l 267 (524)
....++.|.|.+|+||||||.+++...... -..++|++ . ..+...+...++...
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s----~--E~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM----L--EESVEETAEDLIGLH 294 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE----S--SSCHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe----c--cCCHHHHHHHHHHHH
Confidence 345688999999999999999999877654 33567776 2 234556666555443
No 286
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.46 E-value=0.055 Score=56.16 Aligned_cols=48 Identities=4% Similarity=-0.073 Sum_probs=33.1
Q ss_pred ccchhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 189 LVGVDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 189 ~vGR~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
...|.+..+.+.+..........+|.+.|++|+||||+|+.+++++..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 334444445555544221223578999999999999999999998864
No 287
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.45 E-value=0.15 Score=60.26 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=36.8
Q ss_pred HHhhhhhhh-cCCCCceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 196 IQRINSLLC-IGLPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 196 l~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...|...|. .+-....++.|+|.+|+||||||.+++......-..++|++
T Consensus 368 i~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis 418 (1706)
T 3cmw_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 344555554 22234678999999999999999999887655555678887
No 288
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.34 E-value=0.13 Score=47.00 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=24.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
...|.|.|+.|+||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4688999999999999999999987654
No 289
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.33 E-value=0.09 Score=51.87 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=29.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc--ccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS--SQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~wv~ 245 (524)
..+++.+.|.||+||||+|..++..+. ..-..++.++
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 468899999999999999999998777 5444566665
No 290
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.33 E-value=0.066 Score=51.59 Aligned_cols=37 Identities=16% Similarity=0.049 Sum_probs=27.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...+++|+|.+|+||||++..++..+...-..+.++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 3578999999999999999999987654433344443
No 291
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.31 E-value=0.058 Score=51.41 Aligned_cols=26 Identities=19% Similarity=0.054 Sum_probs=22.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..++.|.|.+|+|||||+..++..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999887543
No 292
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.29 E-value=0.046 Score=50.69 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=23.6
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...+|+|.|+.|+||||+++.++.++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 466899999999999999999988663
No 293
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.27 E-value=0.051 Score=60.09 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=81.8
Q ss_pred CCCccchhhhHHhhhhhhhcC-----------CCCceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeeccccccc
Q 044627 186 SEDLVGVDSHIQRINSLLCIG-----------LPDFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRV 254 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (524)
-..++|.+...+.|...+... -...+.+.|+|++|+|||+||+.++......|- .+. .......
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i---~v~-~~~l~~~- 550 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI---SIK-GPELLTM- 550 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCC---CCC-CSSSTTC-
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEE---EEe-chHhhhh-
Confidence 456788888888887766421 123456889999999999999999998754432 111 0000000
Q ss_pred CHHHHHHHHHHHHhCCCCcccCCchHHHHHHh-ccCCeEEEecCCCCh----------------hhHHHHhCCCCCCC--
Q 044627 255 ELEHLRDQILSQILGENIIKTSIPPRYINKRL-QQMKVCIILDNVDKF----------------GHSEYLTGGLSRFG-- 315 (524)
Q Consensus 255 ~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~-- 315 (524)
..+. .......+.+.. ...+.+|+||+++.. ..+..++..+....
T Consensus 551 ------------~~g~----~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~ 614 (806)
T 1ypw_A 551 ------------WFGE----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp ------------CTTT----SSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----
T ss_pred ------------hcCc----cHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc
Confidence 0000 001111122222 234678999998531 11345555554322
Q ss_pred CCcEEEEecCChhhhhhc-----CCCeEEEcCCCCHHHHHHHHHHhh
Q 044627 316 HGSRVIVTTRDKKVLDKY-----GVDYVYKVEGFNYRESLEIFCYYA 357 (524)
Q Consensus 316 ~gs~IIiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~L~~~~~ 357 (524)
.+..||.||..+...... .....+.++..+.++-.+++..+.
T Consensus 615 ~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp -CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 234455566543322111 233467788888888888887765
No 294
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.24 E-value=0.028 Score=52.00 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=16.4
Q ss_pred ceEEEeeccccchHHHHHHHHH-hhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAIL-NQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~-~~~ 234 (524)
..+++|.|+.|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 643
No 295
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.23 E-value=0.061 Score=47.57 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=23.2
Q ss_pred EEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 213 VRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
+.|+|.+|+|||++|.+++.. . ..++++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~---~~~~yia 30 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A---PQVLYIA 30 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C---SSEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhc-C---CCeEEEe
Confidence 679999999999999999876 2 2356665
No 296
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.19 E-value=0.04 Score=49.35 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=21.2
Q ss_pred EEEeeccccchHHHHHHHHHhhhc
Q 044627 212 MVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+++|+|..|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 688999999999999999888653
No 297
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.17 E-value=0.066 Score=53.03 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=24.1
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
...+++|+|+.|+|||||++.++..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3579999999999999999999886543
No 298
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.17 E-value=0.098 Score=51.30 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=30.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..+++.+.|-||+||||+|..++..+...-..++.++
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3578889999999999999999988776655566666
No 299
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.13 E-value=0.093 Score=47.09 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=26.7
Q ss_pred eEEEee-ccccchHHHHHHHHHhhhcccccceeEee
Q 044627 211 RMVRPW-DMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
++|+|+ +-||+||||+|..++..+...-..++.++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 466666 78999999999999987766544566666
No 300
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.93 E-value=0.11 Score=53.98 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=23.5
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
..++|.|+|.+|+||||++..++..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46789999999999999999998766543
No 301
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.92 E-value=0.11 Score=51.25 Aligned_cols=28 Identities=11% Similarity=-0.047 Sum_probs=24.0
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.+..+|+|.|.+|+|||||+..++..+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999887554
No 302
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.91 E-value=0.12 Score=52.06 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=31.6
Q ss_pred hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc------cccceeEee
Q 044627 198 RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS------QFEGRSFMA 245 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~wv~ 245 (524)
.|..+|..+-..-.++.|.|.+|+|||||+..++-.... .-..++|++
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 344445333334568999999999999999987643211 223577776
No 303
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.87 E-value=0.32 Score=49.54 Aligned_cols=54 Identities=17% Similarity=0.229 Sum_probs=34.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccc-cceeEeeeecccccccCHHHHHHHHHHH
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQF-EGRSFMANVREESKRVELEHLRDQILSQ 266 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~l~~~ll~~ 266 (524)
-.-++|.|.+|+|||+|+..+++.+.... +.++|+- +++ ......++.+.+...
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~-iGE--R~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VGE--RTREGNDLYHEMIES 207 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE-ESC--CHHHHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE-CCC--cchHHHHHHHHhhhc
Confidence 45788999999999999999998764332 3344432 322 223455566666543
No 304
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.87 E-value=0.054 Score=48.97 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=23.7
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
.+|+|.|+.|+||||+|+.+++++.-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 58999999999999999999998753
No 305
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.85 E-value=0.059 Score=50.11 Aligned_cols=26 Identities=8% Similarity=0.041 Sum_probs=23.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999998764
No 306
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.75 E-value=0.084 Score=55.17 Aligned_cols=30 Identities=10% Similarity=-0.016 Sum_probs=25.0
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
...+|.++|++|.||||+|+.+++.+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 356899999999999999999998765433
No 307
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.67 E-value=0.16 Score=46.64 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=24.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
....|.|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3578999999999999999999998765
No 308
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.66 E-value=0.17 Score=50.24 Aligned_cols=38 Identities=18% Similarity=0.010 Sum_probs=27.2
Q ss_pred hhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 199 INSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 199 l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
+.+.|..- ..-.-++|.|.+|+|||+|+..+++.+..+
T Consensus 165 aID~l~Pi-grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 165 LIDLFAPI-GKGQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp HHHHHSCC-BTTCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hhhhcccc-cCCceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 34455431 224567899999999999999999876543
No 309
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.59 E-value=0.066 Score=53.56 Aligned_cols=25 Identities=8% Similarity=0.284 Sum_probs=22.6
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5889999999999999999998764
No 310
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.56 E-value=0.06 Score=50.16 Aligned_cols=25 Identities=12% Similarity=-0.019 Sum_probs=22.1
Q ss_pred CCceEEEeeccccchHHHHHHHHHhh
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.. .+++|.|+.|+|||||.+.++.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 35 78999999999999999998874
No 311
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.46 E-value=0.09 Score=55.20 Aligned_cols=27 Identities=22% Similarity=0.179 Sum_probs=24.2
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
..+++|.|+.|+|||||++.++..+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 468999999999999999999998754
No 312
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.40 E-value=0.062 Score=49.92 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=21.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
...+++|.|+.|+|||||.+.++.-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999998763
No 313
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.39 E-value=0.057 Score=49.21 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.0
Q ss_pred eEEEeeccccchHHHHHHHHHhhhc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.+|+|.|+.|+||||+|+.++..+.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999988653
No 314
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.36 E-value=0.13 Score=47.30 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=21.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
...|.|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4588999999999999999999987654
No 315
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.34 E-value=0.17 Score=46.90 Aligned_cols=35 Identities=6% Similarity=0.172 Sum_probs=27.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhccc-ccceeEe
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQ-FEGRSFM 244 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv 244 (524)
...|.|.|+.|+||||+++.++..+... ++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 4689999999999999999999987543 4424433
No 316
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.32 E-value=0.056 Score=49.79 Aligned_cols=24 Identities=13% Similarity=-0.031 Sum_probs=21.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..+++|.|+.|+|||||.+.++.-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998763
No 317
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.28 E-value=0.15 Score=50.02 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=23.8
Q ss_pred CCceEEEeeccccchHHHHHHHHHhhhc
Q 044627 208 PDFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 208 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
....+++|.|.+|+|||||...+...+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3467999999999999999999887543
No 318
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.27 E-value=0.08 Score=45.11 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.2
Q ss_pred eEEEeeccccchHHHHHHHHHhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
+-|+|.|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998874
No 319
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.27 E-value=0.054 Score=57.65 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=36.3
Q ss_pred CCCccchhhhHHhhhhhhhcCCC---------CceEEEeeccccchHHHHHHHHHhhh
Q 044627 186 SEDLVGVDSHIQRINSLLCIGLP---------DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 186 ~~~~vGR~~el~~l~~~L~~~~~---------~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.+.++|.+...+.+...|..+.. ....|.|+|.+|+|||+||+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 35689999887777666654320 01157899999999999999998865
No 320
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.20 E-value=0.15 Score=50.74 Aligned_cols=38 Identities=11% Similarity=0.008 Sum_probs=28.8
Q ss_pred CCceEEEeec-cccchHHHHHHHHHhhhcccccceeEee
Q 044627 208 PDFRMVRPWD-MHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 208 ~~~~~v~I~G-~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...++|+|+| -||+||||+|..++..+...-..++.++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3467888875 9999999999999887765544566665
No 321
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.19 E-value=0.18 Score=45.90 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=23.7
Q ss_pred eEEEeeccccchHHHHHHHHHhhhccc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
..|.+.|..|+||||+++.+++.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999987544
No 322
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.18 E-value=0.071 Score=47.46 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=21.2
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
...|+|.|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 323
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.17 E-value=0.32 Score=44.31 Aligned_cols=27 Identities=7% Similarity=0.111 Sum_probs=24.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
...|.+.|+.|+||||++..+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 458899999999999999999998765
No 324
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.16 E-value=0.49 Score=58.55 Aligned_cols=137 Identities=12% Similarity=0.030 Sum_probs=67.0
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhccCC
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQMK 290 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~~~ 290 (524)
+.|.++|++|+|||+||+.+..... .+. ...+. .+...+...+++.+-..+....... .... .-.-.+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~-~~~-~~~in----fsa~ts~~~~~~~i~~~~~~~~~~~-g~~~---~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS-LYD-VVGIN----FSKDTTTEHILSALHRHTNYVTTSK-GLTL---LPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS-SCE-EEEEE----CCTTCCHHHHHHHHHHHBCCEEETT-TEEE---EEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC-CCc-eEEEE----eecCCCHHHHHHHHHHHhhhccccC-Cccc---cCCCCCce
Confidence 5788999999999999987776542 232 22333 3333344444444443322110000 0000 00003567
Q ss_pred eEEEecCCCCh--h------hHHHHhCCCCCC-----C-------CCcEEEEecCChh------hh-hhcCCCeEEEcCC
Q 044627 291 VCIILDNVDKF--G------HSEYLTGGLSRF-----G-------HGSRVIVTTRDKK------VL-DKYGVDYVYKVEG 343 (524)
Q Consensus 291 ~LlVlDdv~~~--~------~~~~l~~~~~~~-----~-------~gs~IIiTTR~~~------~~-~~~~~~~~~~l~~ 343 (524)
.++.+||++-+ + .++.+...+... . .+..+|.++-.+. +. ........+.++.
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 88889997422 1 222222211110 0 1234444553221 10 0111235788998
Q ss_pred CCHHHHHHHHHHhh
Q 044627 344 FNYRESLEIFCYYA 357 (524)
Q Consensus 344 L~~~ea~~L~~~~~ 357 (524)
++.++-.++|....
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 98888888887654
No 325
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.14 E-value=0.054 Score=49.30 Aligned_cols=23 Identities=30% Similarity=0.124 Sum_probs=20.5
Q ss_pred eEEEeeccccchHHHHHHHHHhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.+++|.|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999988764
No 326
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.13 E-value=0.14 Score=53.76 Aligned_cols=45 Identities=9% Similarity=-0.055 Sum_probs=30.2
Q ss_pred hhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 192 VDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 192 R~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
|....+.+.+..........+|.+.|++|+||||+|+.+...+..
T Consensus 354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 333334444444211123568999999999999999999987653
No 327
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.12 E-value=0.072 Score=49.92 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=22.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..+++|.|+.|+|||||.+.++.-+.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45899999999999999999887544
No 328
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.12 E-value=0.069 Score=49.62 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..+++|.|..|+|||||++.++.-+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998744
No 329
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.08 E-value=0.13 Score=54.24 Aligned_cols=28 Identities=18% Similarity=0.038 Sum_probs=24.4
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
...+|.|.|++|+||||+|+.+.+++..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 3568999999999999999999998753
No 330
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.00 E-value=0.13 Score=52.19 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=24.6
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
...+++|+|.+|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999998876544
No 331
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.98 E-value=0.35 Score=49.48 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=35.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhccc-ccceeEeeeecccccccCHHHHHHHHHH
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQ-FEGRSFMANVREESKRVELEHLRDQILS 265 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~l~~~ll~ 265 (524)
-.-++|.|.+|+|||+|+..+++.+... -+.++|+- +++ ......++...+..
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGE--R~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGE--RTREGNDLYMEMKE 218 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESC--CSHHHHHHHHHHHH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-ccc--CcHHHHHHHHhhhc
Confidence 4568899999999999999999976443 34445543 322 12345566666554
No 332
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.98 E-value=0.059 Score=47.55 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=19.0
Q ss_pred EEEeeccccchHHHHHHHHHh
Q 044627 212 MVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~ 232 (524)
-|+|.|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 477999999999999999886
No 333
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.97 E-value=0.11 Score=46.08 Aligned_cols=25 Identities=8% Similarity=-0.076 Sum_probs=21.5
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
....|+|.|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3557889999999999999998774
No 334
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.97 E-value=0.079 Score=45.79 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=20.0
Q ss_pred eEEEeeccccchHHHHHHHHHh
Q 044627 211 RMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
..|+|.|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999876
No 335
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.96 E-value=0.077 Score=48.90 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=21.6
Q ss_pred eEEEeeccccchHHHHHHHHHhhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
-.++|.|++|+||||+|+.+++++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998876
No 336
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.93 E-value=0.075 Score=47.55 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=20.9
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
...|+|.|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999874
No 337
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.88 E-value=0.49 Score=50.42 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=21.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
.+.+.|+|.+|.||||++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 36889999999999999988776543
No 338
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.86 E-value=0.076 Score=50.16 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=21.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
...+++|.|+.|+|||||.+.++.-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998874
No 339
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.82 E-value=0.071 Score=50.77 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=21.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..+++|.|+.|+|||||++.++.-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999998763
No 340
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=91.80 E-value=0.27 Score=49.39 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=22.1
Q ss_pred CceEEEee-ccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPW-DMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~-G~gGiGKTtLA~~~~~~~~ 235 (524)
..++|+|+ |-||+||||+|..++..+.
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 46667665 8899999999999988765
No 341
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.79 E-value=0.089 Score=50.80 Aligned_cols=26 Identities=4% Similarity=0.034 Sum_probs=22.6
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
....++|+|+.|.|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45689999999999999999988754
No 342
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.74 E-value=0.082 Score=49.56 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=21.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-.+++|.|..|+|||||.+.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998874
No 343
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.74 E-value=0.074 Score=49.53 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=21.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-.+++|.|+.|+|||||.+.++.-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998873
No 344
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.72 E-value=0.089 Score=49.09 Aligned_cols=25 Identities=12% Similarity=-0.045 Sum_probs=22.0
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.-.+++|.|..|+|||||.+.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999998763
No 345
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.72 E-value=0.29 Score=46.15 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=19.9
Q ss_pred eEEEeeccccchHHHHHHHHHhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..++++|.+|+|||||...+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 46789999999999999988753
No 346
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.71 E-value=0.057 Score=50.97 Aligned_cols=27 Identities=4% Similarity=-0.021 Sum_probs=23.6
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
....|+|.|..|+||||+|+.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999888764
No 347
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.68 E-value=0.1 Score=45.63 Aligned_cols=24 Identities=17% Similarity=0.136 Sum_probs=21.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-+-|.|.|.+|+||||||.++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 357889999999999999999874
No 348
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.67 E-value=0.14 Score=46.37 Aligned_cols=30 Identities=10% Similarity=0.231 Sum_probs=25.3
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEG 240 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~ 240 (524)
+-|+|-|.-|+||||+++.+++.+...++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 468899999999999999999988665543
No 349
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.66 E-value=0.067 Score=48.87 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
-.+++|.|+.|+|||||.+.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999988743
No 350
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.65 E-value=0.076 Score=50.01 Aligned_cols=24 Identities=13% Similarity=0.021 Sum_probs=21.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-.+++|.|+.|+|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998763
No 351
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=91.64 E-value=0.19 Score=49.08 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=29.0
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..+++...|-||+||||+|..++..+...-..+..++
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3567778999999999999999988766544566665
No 352
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.62 E-value=0.076 Score=50.31 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..+++|.|+.|+|||||++.++.-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 458999999999999999998863
No 353
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.61 E-value=0.085 Score=49.87 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=21.9
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.-.+++|.|+.|+|||||.+.++.-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3468999999999999999998874
No 354
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.57 E-value=0.14 Score=52.89 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=24.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQF 238 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 238 (524)
..+|.++|++|+||||+++.+++.+...|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 45788999999999999999998765433
No 355
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.54 E-value=0.081 Score=48.89 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
-.+++|.|+.|+|||||.+.++.-+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998754
No 356
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.53 E-value=0.088 Score=44.86 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=19.4
Q ss_pred EEEeeccccchHHHHHHHHHhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-|.+.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 357
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.51 E-value=0.097 Score=49.58 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=21.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-.+++|.|..|+|||||.+.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998874
No 358
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.49 E-value=0.082 Score=49.48 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=21.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..+++|.|..|+|||||.+.++.-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998774
No 359
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.48 E-value=0.082 Score=48.78 Aligned_cols=25 Identities=16% Similarity=-0.141 Sum_probs=22.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
....|+|.|..|+|||||++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999998775
No 360
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=91.45 E-value=0.16 Score=50.61 Aligned_cols=35 Identities=23% Similarity=0.181 Sum_probs=28.0
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
+++.+.|-||+||||+|..++..+...-..+..++
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd 37 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAG 37 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Confidence 57889999999999999999887665544566666
No 361
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.44 E-value=0.18 Score=46.59 Aligned_cols=36 Identities=14% Similarity=-0.105 Sum_probs=26.7
Q ss_pred ceEEEee-ccccchHHHHHHHHHhhhccc-ccceeEee
Q 044627 210 FRMVRPW-DMHGIAKTDIARAILNQISSQ-FEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~-G~gGiGKTtLA~~~~~~~~~~-f~~~~wv~ 245 (524)
.++|+|+ +-||+||||+|..++..+... -..++.++
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 4677666 568999999999999987765 33455554
No 362
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.40 E-value=0.092 Score=49.54 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=22.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..+++|.|+.|+|||||.+.++.-+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4589999999999999999988744
No 363
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.37 E-value=0.093 Score=49.37 Aligned_cols=24 Identities=21% Similarity=0.092 Sum_probs=21.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..+++|.|+.|+|||||.+.++.-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998874
No 364
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.37 E-value=0.1 Score=47.91 Aligned_cols=26 Identities=4% Similarity=0.031 Sum_probs=23.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
..+|+|.|+.|+||||+|+.++.++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999875
No 365
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.36 E-value=0.11 Score=45.72 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=21.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999873
No 366
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=91.29 E-value=0.14 Score=49.09 Aligned_cols=48 Identities=6% Similarity=0.063 Sum_probs=30.8
Q ss_pred hHHhhhhhhhcCCCCceEEEeec---cccchHHHHHHHHHhhhcccccceeEee
Q 044627 195 HIQRINSLLCIGLPDFRMVRPWD---MHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 195 el~~l~~~L~~~~~~~~~v~I~G---~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.+.++.+.+... .++|+|++ -||+||||+|..++..+...-..++.++
T Consensus 22 ~~~~~~r~~~~~---~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD 72 (298)
T 2oze_A 22 ILEELRRILSNK---NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMID 72 (298)
T ss_dssp HHHHHHHHHHHH---CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhcCC---CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 344455555432 34566665 9999999999999887654433455554
No 367
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.27 E-value=0.12 Score=44.23 Aligned_cols=24 Identities=4% Similarity=-0.065 Sum_probs=20.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998874
No 368
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.25 E-value=0.097 Score=49.72 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=21.9
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
...+++|.|..|+|||||++.++.-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998774
No 369
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.21 E-value=0.084 Score=53.31 Aligned_cols=36 Identities=14% Similarity=-0.032 Sum_probs=26.5
Q ss_pred hhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhh
Q 044627 198 RINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.+.+.|.........++|.|..|+|||||.+.+...
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 344444332234679999999999999999999873
No 370
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=91.21 E-value=0.18 Score=53.68 Aligned_cols=37 Identities=16% Similarity=0.011 Sum_probs=28.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..+++.+.|.||+||||+|..++..+...-..++.++
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3578889999999999999998887655433455544
No 371
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.20 E-value=0.15 Score=45.89 Aligned_cols=26 Identities=8% Similarity=-0.042 Sum_probs=22.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
...+|+|+|++|+||+|+|..+.+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 46799999999999999999887655
No 372
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.18 E-value=0.17 Score=49.91 Aligned_cols=27 Identities=11% Similarity=-0.092 Sum_probs=23.6
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
+..+|+|.|.+|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 467999999999999999999987543
No 373
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=91.16 E-value=0.25 Score=48.84 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=28.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc--ccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS--SQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~wv~ 245 (524)
..++...|-||+||||+|..++..+. ..-..++-++
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 45777889999999999999998877 5544566666
No 374
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.15 E-value=0.1 Score=46.03 Aligned_cols=23 Identities=9% Similarity=0.185 Sum_probs=20.0
Q ss_pred eEEEeeccccchHHHHHHHHHhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
--|+|.|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35779999999999999998864
No 375
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.10 E-value=0.1 Score=49.40 Aligned_cols=24 Identities=8% Similarity=-0.010 Sum_probs=21.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..+++|.|..|+|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999998763
No 376
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.08 E-value=0.096 Score=49.20 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=21.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..+++|.|+.|+|||||.+.++.-+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999988743
No 377
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.02 E-value=0.12 Score=50.36 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.9
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
..++++|+|+.|.|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 36799999999999999999998753
No 378
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.00 E-value=0.096 Score=49.96 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=21.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
-.+++|.|+.|+|||||.+.++.-+
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4589999999999999999988743
No 379
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.00 E-value=1.8 Score=39.80 Aligned_cols=38 Identities=21% Similarity=0.131 Sum_probs=27.2
Q ss_pred hhhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 192 VDSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 192 R~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
|+...+.+..++.. .-+.|+|..|.|||.+|..++...
T Consensus 95 ~~~Q~~ai~~~~~~-----~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD-----KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT-----SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC-----CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 45555555555542 127789999999999998887765
No 380
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.99 E-value=0.13 Score=44.66 Aligned_cols=24 Identities=21% Similarity=0.055 Sum_probs=21.0
Q ss_pred CceEEEeeccccchHHHHHHHHHh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
....|+|.|.+|+|||||...+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356788999999999999999876
No 381
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.99 E-value=0.15 Score=44.78 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=21.4
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
...-|+|.|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3567889999999999999998764
No 382
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.94 E-value=0.13 Score=44.52 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=20.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346889999999999999998763
No 383
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.92 E-value=0.11 Score=44.31 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=20.1
Q ss_pred eEEEeeccccchHHHHHHHHHhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.-|+|.|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998863
No 384
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.89 E-value=0.26 Score=46.69 Aligned_cols=38 Identities=11% Similarity=0.001 Sum_probs=29.4
Q ss_pred CCceEEEeecc-ccchHHHHHHHHHhhhcccccceeEee
Q 044627 208 PDFRMVRPWDM-HGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 208 ~~~~~v~I~G~-gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...++|.|+|. ||+||||+|..++..+...-..++.++
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34678888865 899999999999987765545566666
No 385
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.89 E-value=0.24 Score=47.65 Aligned_cols=38 Identities=11% Similarity=0.054 Sum_probs=29.3
Q ss_pred CCceEEEeecc-ccchHHHHHHHHHhhhcccccceeEee
Q 044627 208 PDFRMVRPWDM-HGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 208 ~~~~~v~I~G~-gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...++|.|+|. ||+||||+|..++..+...-..++.++
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 34678888886 899999999999887765544566665
No 386
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.88 E-value=1.2 Score=42.61 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=21.0
Q ss_pred eEEEeeccccchHHHHHHHHHhhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.+++|.|++|+|||||.+.+....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 478999999999999999987644
No 387
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.83 E-value=0.14 Score=54.30 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=24.0
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...+|.|.|++|+||||+|+.+.+++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999763
No 388
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.83 E-value=0.12 Score=44.17 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=19.4
Q ss_pred EEEeeccccchHHHHHHHHHhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988763
No 389
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.77 E-value=0.14 Score=46.42 Aligned_cols=26 Identities=8% Similarity=-0.096 Sum_probs=22.0
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
....|.|.|.+|+|||||...+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35578899999999999999988743
No 390
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.76 E-value=0.16 Score=44.12 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=21.5
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
...-|+|.|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457889999999999999998874
No 391
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.76 E-value=0.11 Score=45.33 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=20.2
Q ss_pred eEEEeeccccchHHHHHHHHHhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..|+|.|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999864
No 392
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.75 E-value=0.12 Score=44.21 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=19.5
Q ss_pred EEEeeccccchHHHHHHHHHhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-|+|.|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998863
No 393
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=90.74 E-value=0.18 Score=47.32 Aligned_cols=37 Identities=14% Similarity=0.085 Sum_probs=27.7
Q ss_pred CceEEEee-ccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPW-DMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..++|+|+ +-||+||||+|..++..+...-..++.++
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 35677776 78899999999999987765534455555
No 394
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.72 E-value=0.14 Score=45.29 Aligned_cols=25 Identities=8% Similarity=0.211 Sum_probs=21.5
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
....|+|.|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998763
No 395
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.72 E-value=0.11 Score=44.56 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.5
Q ss_pred eEEEeeccccchHHHHHHHHHh
Q 044627 211 RMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
--|+|.|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999999886
No 396
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.71 E-value=0.12 Score=44.43 Aligned_cols=24 Identities=13% Similarity=-0.067 Sum_probs=20.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998864
No 397
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.68 E-value=0.13 Score=45.41 Aligned_cols=28 Identities=11% Similarity=-0.058 Sum_probs=21.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhccc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQ 237 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 237 (524)
.--|+|.|.+|+|||||.+.+.......
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~ 41 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEG 41 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcccc
Confidence 3457899999999999997766654433
No 398
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.67 E-value=0.12 Score=45.49 Aligned_cols=24 Identities=8% Similarity=-0.076 Sum_probs=20.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998874
No 399
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.63 E-value=0.12 Score=44.44 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=18.7
Q ss_pred EEEeeccccchHHHHHHHHHh
Q 044627 212 MVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~ 232 (524)
-|+|.|.+|+|||||...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999864
No 400
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.62 E-value=0.13 Score=44.19 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=19.4
Q ss_pred EEEeeccccchHHHHHHHHHhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998763
No 401
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.60 E-value=0.12 Score=44.97 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=20.0
Q ss_pred eEEEeeccccchHHHHHHHHHhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
--|+|.|.+|+|||||...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999998874
No 402
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.57 E-value=0.17 Score=51.28 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=22.0
Q ss_pred eEEEeeccccchHHHHHHHHHhhhcc
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
.-++|.|.+|+|||+|+.++++....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 34789999999999999999987654
No 403
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.55 E-value=0.13 Score=44.19 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.1
Q ss_pred eEEEeeccccchHHHHHHHHHhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999998874
No 404
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.48 E-value=0.13 Score=43.91 Aligned_cols=21 Identities=14% Similarity=0.040 Sum_probs=18.8
Q ss_pred EEeeccccchHHHHHHHHHhh
Q 044627 213 VRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 213 v~I~G~gGiGKTtLA~~~~~~ 233 (524)
|+|.|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999998763
No 405
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.45 E-value=0.13 Score=45.42 Aligned_cols=24 Identities=13% Similarity=-0.068 Sum_probs=20.1
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345779999999999999888763
No 406
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.45 E-value=0.15 Score=45.85 Aligned_cols=23 Identities=9% Similarity=-0.162 Sum_probs=20.0
Q ss_pred ceEEEeeccccchHHHHHHHHHh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
.--|+|.|.+|+|||||...+..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 44677999999999999998886
No 407
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.44 E-value=0.2 Score=47.06 Aligned_cols=35 Identities=11% Similarity=0.051 Sum_probs=25.2
Q ss_pred hhhhhhcCCCCceEEEeeccccchHHHHHHHHHhh
Q 044627 199 INSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 199 l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
+...+.........|+|.|.+|+|||||...+...
T Consensus 25 ~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 25 FFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33333333234567889999999999999998874
No 408
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.43 E-value=0.13 Score=48.73 Aligned_cols=23 Identities=9% Similarity=0.234 Sum_probs=20.3
Q ss_pred EEEeeccccchHHHHHHHHHhhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.++|.|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988743
No 409
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.40 E-value=0.12 Score=49.87 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.8
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
....++|+|..|+|||||++.++.-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 3568999999999999999998763
No 410
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.38 E-value=0.13 Score=45.14 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.8
Q ss_pred eEEEeeccccchHHHHHHHHHhhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.+.+|+|..|+|||||+.+++.-+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999987644
No 411
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.37 E-value=0.12 Score=44.29 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=18.6
Q ss_pred EEEeeccccchHHHHHHHHHh
Q 044627 212 MVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~ 232 (524)
-|+|.|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 477999999999999998865
No 412
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.35 E-value=0.31 Score=44.08 Aligned_cols=33 Identities=15% Similarity=0.073 Sum_probs=25.5
Q ss_pred EEEe-eccccchHHHHHHHHHhhhcccccceeEee
Q 044627 212 MVRP-WDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 212 ~v~I-~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
+|+| .+-||+||||+|..++..+...- .++.++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 3444 68899999999999998876655 666666
No 413
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.32 E-value=0.16 Score=44.04 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.2
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
...-|+|.|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999988763
No 414
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.27 E-value=0.14 Score=44.02 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=19.9
Q ss_pred eEEEeeccccchHHHHHHHHHhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
--|+|.|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999998763
No 415
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.26 E-value=0.14 Score=44.35 Aligned_cols=24 Identities=8% Similarity=-0.006 Sum_probs=20.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999998763
No 416
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.26 E-value=0.14 Score=44.39 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=20.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999998763
No 417
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.25 E-value=0.14 Score=43.85 Aligned_cols=22 Identities=5% Similarity=0.049 Sum_probs=19.6
Q ss_pred eEEEeeccccchHHHHHHHHHh
Q 044627 211 RMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
--|+|.|.+|+|||||...+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999999886
No 418
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.23 E-value=0.17 Score=44.65 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=21.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
...|+|.|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998874
No 419
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=90.23 E-value=0.27 Score=48.76 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=26.6
Q ss_pred eEEEee-ccccchHHHHHHHHHhhhcccccceeEee
Q 044627 211 RMVRPW-DMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
++|+|+ +-||+||||+|..++..+...-..++.++
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID 37 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVD 37 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 466665 89999999999999887765444566666
No 420
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.22 E-value=0.14 Score=45.25 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=20.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 345789999999999999988763
No 421
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.21 E-value=0.22 Score=47.08 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=23.7
Q ss_pred hhcCCCCceEEEeeccccchHHHHHHHHHhh
Q 044627 203 LCIGLPDFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 203 L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
+.........|++.|.+|+|||||...+...
T Consensus 32 ~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 32 LKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3333334567889999999999999998864
No 422
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.16 E-value=0.35 Score=52.02 Aligned_cols=38 Identities=18% Similarity=0.082 Sum_probs=26.0
Q ss_pred hhhHHhhhhhhhcCCCCceEEEeeccccchHHHHHHHHHhhh
Q 044627 193 DSHIQRINSLLCIGLPDFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 193 ~~el~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
+...+.+...|... .+..|+|+||.|||+.+.++...+
T Consensus 192 ~~Q~~AV~~al~~~----~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 192 TSQKEAVLFALSQK----ELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp HHHHHHHHHHHHCS----SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC----CceEEECCCCCCHHHHHHHHHHHH
Confidence 34456677666532 367899999999997766655543
No 423
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.12 E-value=0.26 Score=46.30 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=27.1
Q ss_pred CceEEEe-eccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRP-WDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I-~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
..++|+| .|-||+||||+|..++..+. .-..++.++
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD 62 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLID 62 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEE
Confidence 3566666 67899999999999998877 444556665
No 424
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.06 E-value=0.15 Score=44.20 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=20.9
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998874
No 425
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.98 E-value=0.15 Score=45.30 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=20.2
Q ss_pred eEEEeeccccchHHHHHHHHHhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..|+|.|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999998873
No 426
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=89.95 E-value=0.33 Score=46.22 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=25.8
Q ss_pred eEEEee-ccccchHHHHHHHHHhhhcccccceeEee
Q 044627 211 RMVRPW-DMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
++|+|+ +-||+||||+|..++..+...-..++.++
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 40 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVID 40 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 466665 78999999999999987765533455555
No 427
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=89.93 E-value=0.21 Score=48.17 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=22.0
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..+.|+|+|.+|+|||||...+...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 4678999999999999999998763
No 428
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.93 E-value=0.23 Score=45.23 Aligned_cols=34 Identities=12% Similarity=-0.111 Sum_probs=24.1
Q ss_pred eEEEeec-cccchHHHHHHHHHhhhcccccceeEe
Q 044627 211 RMVRPWD-MHGIAKTDIARAILNQISSQFEGRSFM 244 (524)
Q Consensus 211 ~~v~I~G-~gGiGKTtLA~~~~~~~~~~f~~~~wv 244 (524)
++|.|.| -||+||||+|..++..+...-..+..+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 4677777 489999999999988765543334444
No 429
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.92 E-value=0.17 Score=50.31 Aligned_cols=26 Identities=8% Similarity=0.024 Sum_probs=22.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQIS 235 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 235 (524)
...++|+|..|+|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56889999999999999999988654
No 430
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.89 E-value=0.16 Score=44.14 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=20.8
Q ss_pred CceEEEeeccccchHHHHHHHHHh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
...-|+|.|.+|+|||||...+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 345688999999999999999876
No 431
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.89 E-value=0.15 Score=45.28 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.4
Q ss_pred eEEEeeccccchHHHHHHHHHh
Q 044627 211 RMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
--|+|.|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999875
No 432
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.88 E-value=0.13 Score=45.09 Aligned_cols=22 Identities=5% Similarity=0.042 Sum_probs=19.4
Q ss_pred EEEeeccccchHHHHHHHHHhh
Q 044627 212 MVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-|+|.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4779999999999999998873
No 433
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.85 E-value=0.16 Score=44.43 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=20.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998864
No 434
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.81 E-value=0.16 Score=44.69 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=20.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998863
No 435
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.81 E-value=0.15 Score=48.91 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.4
Q ss_pred CceEEEeeccccchHHHHHHHHHhhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
...+++|.|..|+|||||.+.++.-+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999988743
No 436
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.77 E-value=0.16 Score=44.50 Aligned_cols=23 Identities=9% Similarity=0.211 Sum_probs=20.0
Q ss_pred eEEEeeccccchHHHHHHHHHhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
--|+|.|.+|+|||||...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999998863
No 437
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.76 E-value=0.16 Score=50.07 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-.+++|.|+.|+|||||.+.++--
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 458999999999999999999873
No 438
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.75 E-value=0.29 Score=49.51 Aligned_cols=86 Identities=13% Similarity=0.019 Sum_probs=46.3
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcccCCchHHHHHHhcc
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIKTSIPPRYINKRLQQ 288 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~l~~~L~~ 288 (524)
...+++|.|+.|+|||||.+.+...+...-..++++.+--+. ..... .+.. -..+........++..|+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~-~~~~~--------~q~~-v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEF-DIDGI--------GQTQ-VNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCS-CCSSS--------EEEE-CBGGGTBCHHHHHHHHGGG
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchh-ccCCc--------ceEE-EccccCcCHHHHHHHHhcc
Confidence 356899999999999999999988765432223333311000 00000 0000 0000012233456666777
Q ss_pred CCeEEEecCCCChhhH
Q 044627 289 MKVCIILDNVDKFGHS 304 (524)
Q Consensus 289 ~~~LlVlDdv~~~~~~ 304 (524)
.+-++++.++.+....
T Consensus 236 ~pd~i~vgEiRd~et~ 251 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETA 251 (418)
T ss_dssp CCSEEEESCCCSHHHH
T ss_pred CCCeEEEcCcCCHHHH
Confidence 7777777877665443
No 439
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.68 E-value=0.16 Score=44.85 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=20.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998873
No 440
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.68 E-value=0.16 Score=44.28 Aligned_cols=22 Identities=9% Similarity=-0.135 Sum_probs=19.4
Q ss_pred eEEEeeccccchHHHHHHHHHh
Q 044627 211 RMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
--|+|.|.+|+|||||...+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999998876
No 441
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=89.64 E-value=0.18 Score=45.79 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=20.6
Q ss_pred ceEEEeeccccchHHHHHHHHHh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
.-.|||+|.-|+||||+++.+..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 442
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.61 E-value=0.16 Score=44.42 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=20.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999998863
No 443
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.56 E-value=0.22 Score=48.09 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=20.5
Q ss_pred eEEEeeccccchHHHHHHHHHhhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQI 234 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~~ 234 (524)
.+++|.|+.|+|||||.+.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 478999999999999999998 54
No 444
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.56 E-value=0.22 Score=42.75 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=20.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999998763
No 445
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.54 E-value=0.17 Score=44.16 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=20.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 346789999999999999998863
No 446
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.52 E-value=0.17 Score=43.85 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=19.4
Q ss_pred eEEEeeccccchHHHHHHHHHh
Q 044627 211 RMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
--|+|.|.+|+|||||...+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3577899999999999999876
No 447
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.52 E-value=0.17 Score=44.01 Aligned_cols=23 Identities=9% Similarity=-0.086 Sum_probs=19.7
Q ss_pred eEEEeeccccchHHHHHHHHHhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
--|+|.|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35779999999999999988763
No 448
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.50 E-value=0.2 Score=44.67 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.9
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998774
No 449
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.47 E-value=0.17 Score=43.96 Aligned_cols=24 Identities=8% Similarity=0.043 Sum_probs=20.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998863
No 450
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.46 E-value=0.17 Score=44.11 Aligned_cols=23 Identities=9% Similarity=0.203 Sum_probs=20.3
Q ss_pred ceEEEeeccccchHHHHHHHHHh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
..-|+|.|.+|+|||||...+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45688999999999999999885
No 451
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.43 E-value=0.17 Score=44.87 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=20.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999998874
No 452
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.43 E-value=0.13 Score=45.83 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=19.9
Q ss_pred ceEEEeeccccchHHHHHHHHHh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
..-|+|.|.+|+|||||...+..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999999853
No 453
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=89.43 E-value=0.42 Score=45.64 Aligned_cols=51 Identities=12% Similarity=0.035 Sum_probs=33.7
Q ss_pred hHHhhhhhhhc--CCCCceEEEeec-cccchHHHHHHHHHhhhcccccceeEee
Q 044627 195 HIQRINSLLCI--GLPDFRMVRPWD-MHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 195 el~~l~~~L~~--~~~~~~~v~I~G-~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.+..|+..|.. .....++|.|+| .||+||||+|..++..+...-..++.++
T Consensus 75 a~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 75 AIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp HHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 34444444432 223456777766 5899999999999988776545566666
No 454
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.42 E-value=0.17 Score=49.93 Aligned_cols=24 Identities=33% Similarity=0.214 Sum_probs=21.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-.+++|.|+.|+|||||.+.++--
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999998863
No 455
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.33 E-value=0.18 Score=43.77 Aligned_cols=24 Identities=17% Similarity=-0.017 Sum_probs=20.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346789999999999999998763
No 456
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.32 E-value=0.18 Score=49.60 Aligned_cols=24 Identities=17% Similarity=-0.069 Sum_probs=21.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-.+++|.|+.|+|||||.+.++--
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 458999999999999999999873
No 457
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.27 E-value=0.18 Score=44.50 Aligned_cols=24 Identities=8% Similarity=-0.035 Sum_probs=20.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 345789999999999999998874
No 458
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.26 E-value=0.19 Score=49.64 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=21.3
Q ss_pred CceEEEeeccccchHHHHHHHHHh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
.-.+++|.|+.|+|||||.+.++.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 346899999999999999999876
No 459
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.25 E-value=0.51 Score=48.36 Aligned_cols=86 Identities=15% Similarity=0.136 Sum_probs=45.4
Q ss_pred ceEEEeeccccchHHHHHH-HHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc----cCCc-h----
Q 044627 210 FRMVRPWDMHGIAKTDIAR-AILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK----TSIP-P---- 279 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~-~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~----~~~~-~---- 279 (524)
-.-++|.|.+|+|||+||. .+++... -+.++.+..+++ ......++.+.+...-.....-+ .++. .
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGe--R~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQKG--QDVICIYVAIGQ--KQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGGS--CSEEEEEEEESC--CHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhhc--CCcEEEEEECCC--cchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 3467899999999999965 6666553 333333332322 22344555555544211111100 1111 1
Q ss_pred -----HHHHHHh--ccCCeEEEecCCC
Q 044627 280 -----RYINKRL--QQMKVCIILDNVD 299 (524)
Q Consensus 280 -----~~l~~~L--~~~~~LlVlDdv~ 299 (524)
-.+.+++ +++.+||++||+.
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 1223333 4679999999994
No 460
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.24 E-value=0.18 Score=44.92 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=20.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998763
No 461
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.23 E-value=0.18 Score=50.23 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=21.5
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-.+++|.|+.|+|||||.+.++--
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 458999999999999999999873
No 462
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.19 E-value=0.16 Score=45.21 Aligned_cols=24 Identities=8% Similarity=0.176 Sum_probs=19.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|.|.|.+|+|||+|...+.++
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 345779999999999999877664
No 463
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.19 E-value=0.15 Score=45.50 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=19.5
Q ss_pred eEEEeeccccchHHHHHHHHHh
Q 044627 211 RMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
.-|+|.|.+|+|||||...+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999875
No 464
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.18 E-value=0.2 Score=49.56 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=21.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-.+++|.|+.|+|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 458999999999999999998873
No 465
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.17 E-value=0.17 Score=49.94 Aligned_cols=24 Identities=21% Similarity=0.066 Sum_probs=21.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-.+++|.|+.|+|||||.+.++--
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999998863
No 466
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.16 E-value=0.18 Score=45.26 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=20.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999998763
No 467
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.15 E-value=0.19 Score=44.54 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=20.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998874
No 468
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.15 E-value=0.46 Score=48.74 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=45.2
Q ss_pred ceEEEeeccccchHHHHHH-HHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc----cCCc-h----
Q 044627 210 FRMVRPWDMHGIAKTDIAR-AILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK----TSIP-P---- 279 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~-~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~----~~~~-~---- 279 (524)
-.-++|.|.+|+|||+||. .+++... -+.++.+..+++ ......++.+.+...-.....-+ .++. .
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~IGe--R~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVAIGQ--KKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEEESC--CHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCC--CcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 3467899999999999965 6766553 333333332321 12344555555543211110000 1111 1
Q ss_pred -----HHHHHHh--ccCCeEEEecCCC
Q 044627 280 -----RYINKRL--QQMKVCIILDNVD 299 (524)
Q Consensus 280 -----~~l~~~L--~~~~~LlVlDdv~ 299 (524)
-.+.+++ +++.+||++||+.
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 1223333 4679999999994
No 469
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.08 E-value=0.18 Score=44.95 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.9
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456889999999999999998874
No 470
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.06 E-value=0.2 Score=49.53 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=21.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-.+++|.|+.|+|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 458999999999999999998873
No 471
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.04 E-value=0.11 Score=46.63 Aligned_cols=25 Identities=16% Similarity=-0.048 Sum_probs=21.1
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
....|+|.|.+|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999887653
No 472
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.03 E-value=0.2 Score=44.24 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=20.1
Q ss_pred eEEEeeccccchHHHHHHHHHhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.-|+|.|.+|+|||||...+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998863
No 473
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.00 E-value=0.2 Score=44.40 Aligned_cols=24 Identities=13% Similarity=-0.086 Sum_probs=20.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999998874
No 474
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.97 E-value=0.19 Score=44.47 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=20.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999998864
No 475
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.94 E-value=0.2 Score=45.20 Aligned_cols=24 Identities=21% Similarity=0.037 Sum_probs=20.3
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346789999999999999998863
No 476
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.91 E-value=0.19 Score=49.93 Aligned_cols=24 Identities=21% Similarity=0.086 Sum_probs=21.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
-.+++|.|+.|+|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 458999999999999999998873
No 477
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.91 E-value=0.19 Score=44.84 Aligned_cols=24 Identities=8% Similarity=-0.017 Sum_probs=20.6
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998763
No 478
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=88.89 E-value=0.23 Score=44.65 Aligned_cols=24 Identities=8% Similarity=-0.076 Sum_probs=20.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999998874
No 479
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=88.88 E-value=0.2 Score=44.09 Aligned_cols=24 Identities=8% Similarity=-0.031 Sum_probs=20.7
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998864
No 480
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.83 E-value=0.21 Score=44.18 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=20.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345789999999999999998763
No 481
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.80 E-value=0.21 Score=44.16 Aligned_cols=24 Identities=8% Similarity=0.047 Sum_probs=20.9
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998873
No 482
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=88.80 E-value=0.22 Score=49.53 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=21.0
Q ss_pred ceEEEeeccccchHHHHHHHHHh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
-.+++|.|+.|+|||||.+.++.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46899999999999999999886
No 483
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.80 E-value=0.2 Score=44.38 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=20.2
Q ss_pred ceEEEeeccccchHHHHHHHHHh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
..-|+|.|.+|+|||||...+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 34678999999999999999876
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.75 E-value=0.32 Score=50.88 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=27.0
Q ss_pred CceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
.-.+++|.|.+|+|||||++.++......-..++++.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3568999999999999999999886543322234443
No 485
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.68 E-value=0.21 Score=43.95 Aligned_cols=23 Identities=9% Similarity=-0.039 Sum_probs=20.2
Q ss_pred ceEEEeeccccchHHHHHHHHHh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
..-|+|.|.+|+|||||...+..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 45688999999999999999876
No 486
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=88.66 E-value=0.2 Score=45.47 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=19.7
Q ss_pred ceEEEeeccccchHHHHHHHHHh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
..-|+|.|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34578999999999999999874
No 487
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.63 E-value=0.23 Score=49.27 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=27.0
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEee
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
...++|+|..|+|||||++.++..+.. -.+.+.+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie 209 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIE 209 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEEC
Confidence 358999999999999999999886543 23455555
No 488
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.62 E-value=0.21 Score=44.42 Aligned_cols=24 Identities=4% Similarity=-0.058 Sum_probs=20.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 457889999999999999998763
No 489
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.57 E-value=0.2 Score=44.41 Aligned_cols=25 Identities=16% Similarity=0.040 Sum_probs=21.7
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
....|+|.|.+|+|||||...+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4667889999999999999998763
No 490
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.53 E-value=0.22 Score=43.86 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=20.3
Q ss_pred eEEEeeccccchHHHHHHHHHhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.-|+|.|.+|+|||||...+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999998874
No 491
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=88.48 E-value=0.35 Score=45.05 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=25.6
Q ss_pred eEEEe-eccccchHHHHHHHHHhhhcccccceeEee
Q 044627 211 RMVRP-WDMHGIAKTDIARAILNQISSQFEGRSFMA 245 (524)
Q Consensus 211 ~~v~I-~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~ 245 (524)
++|+| .+-||+||||+|..++..+...-..++.++
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45655 667899999999999987765433455555
No 492
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.46 E-value=0.54 Score=43.11 Aligned_cols=106 Identities=9% Similarity=-0.031 Sum_probs=51.8
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcccccceeEeeeecccccccCHHHHHHHHHHHHhCCCCcc-cCCchHHHHHHhcc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISSQFEGRSFMANVREESKRVELEHLRDQILSQILGENIIK-TSIPPRYINKRLQQ 288 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-~~~~~~~l~~~L~~ 288 (524)
..+..++|.-|.||||-+...+++....-..++.+... .....+ .. +.+.++...... .....+ +.+.. +
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~--~D~Ryg-~~----i~sr~G~~~~a~~i~~~~d-i~~~~-~ 89 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA--KDTRYS-SS----FCTHDRNTMEALPACLLRD-VAQEA-L 89 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET--TCCCC----------------CEEEEESSGGG-GHHHH-T
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec--CCccch-HH----HHhhcCCeeEEEecCCHHH-HHHHh-c
Confidence 46888999999999999888777765443334443311 112223 33 333332222111 111111 22222 2
Q ss_pred CCeEEEecCCCChhhHHHHhCCCCCCCCCcEEEEecCC
Q 044627 289 MKVCIILDNVDKFGHSEYLTGGLSRFGHGSRVIVTTRD 326 (524)
Q Consensus 289 ~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~ 326 (524)
.--+|++|.+.-...+..+...+.. .|..||+|.++
T Consensus 90 ~~dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 90 GVAVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp TCSEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCS
T ss_pred cCCEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEecc
Confidence 3348999988311123333332221 47789999988
No 493
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=88.45 E-value=0.25 Score=45.82 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=20.6
Q ss_pred eEEEeeccccchHHHHHHHHHhh
Q 044627 211 RMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 211 ~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.+|+|+|+.|+||||+|..+...
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998765
No 494
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.44 E-value=0.2 Score=44.59 Aligned_cols=24 Identities=8% Similarity=-0.112 Sum_probs=19.9
Q ss_pred ceEEEeeccccchHHHHHHHHHhh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446779999999999999988763
No 495
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=88.43 E-value=0.25 Score=45.62 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=21.6
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
....|+|.|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3567889999999999999998873
No 496
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=88.41 E-value=0.24 Score=45.27 Aligned_cols=25 Identities=4% Similarity=0.038 Sum_probs=21.5
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
....|+|.|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567889999999999999998774
No 497
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=88.40 E-value=0.19 Score=44.00 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=21.2
Q ss_pred CceEEEeeccccchHHHHHHHHHhh
Q 044627 209 DFRMVRPWDMHGIAKTDIARAILNQ 233 (524)
Q Consensus 209 ~~~~v~I~G~gGiGKTtLA~~~~~~ 233 (524)
...-|+|.|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998864
No 498
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.38 E-value=0.28 Score=50.00 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=22.4
Q ss_pred ceEEEeeccccchHHHHHHHHHhhhcc
Q 044627 210 FRMVRPWDMHGIAKTDIARAILNQISS 236 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~~~~~ 236 (524)
-.-++|.|.+|+|||+|+..+++....
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345678899999999999999987653
No 499
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=88.37 E-value=0.23 Score=45.35 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=18.4
Q ss_pred EEEeeccccchHHHHHHHHHh
Q 044627 212 MVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 212 ~v~I~G~gGiGKTtLA~~~~~ 232 (524)
-|.|.|.+|+|||+|...+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 366899999999999998876
No 500
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.32 E-value=0.21 Score=43.85 Aligned_cols=23 Identities=17% Similarity=-0.031 Sum_probs=20.5
Q ss_pred ceEEEeeccccchHHHHHHHHHh
Q 044627 210 FRMVRPWDMHGIAKTDIARAILN 232 (524)
Q Consensus 210 ~~~v~I~G~gGiGKTtLA~~~~~ 232 (524)
..-|+|.|.+|+|||||...+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45788999999999999999885
Done!